BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00024507
         (610 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringsp...   113   3e-42
ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot viru...   111   7e-39

>gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringspot virus satellite
           RNA]
          Length = 287

 Score =  113 bits (283), Expect(2) = 3e-42
 Identities = 57/86 (66%), Positives = 66/86 (76%), Gaps = 2/86 (2%)
 Frame = +1

Query: 52  MLPKRVRVISKSTGRIFTVGRHDLHLLPSGKRAWVPLRNPTVAGGSSRRERPRKAVTKQP 231
           +LPKRVRV+SK +GRIFTVGRHDLH+LPSGKRAWVP+R P  AGG+ RRERP     K  
Sbjct: 13  VLPKRVRVVSKRSGRIFTVGRHDLHVLPSGKRAWVPVRAPIAAGGNFRRERPLVVSHKTQ 72

Query: 232 VVRPIRAP--VKVENRFSPLCVEESL 303
            VRPIR P  VK  NRF+PL V+E +
Sbjct: 73  QVRPIRMPAAVKTSNRFAPLSVKEGV 98



 Score = 84.7 bits (208), Expect(2) = 3e-42
 Identities = 52/91 (57%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
 Frame = +3

Query: 333 DAVRAKAS-PAKARKGVVTLVETSRDFTLFEDNTSAVCVIP--GQTPAEAESLKREFAKR 503
           DA+R+ A      RKGVVTLVET +DF LF D  +   V+P  GQT  EAE+L+REF KR
Sbjct: 114 DALRSSAFVKPSVRKGVVTLVETEKDFALFGDEFTQNQVVPCPGQTLPEAEALQREFHKR 173

Query: 504 ALVFSGRRLQPVGLPEDLSSDPFASPLPRGP 596
            L FSGRRL   GLP    SDPFASP P  P
Sbjct: 174 TLAFSGRRLSVSGLPS--GSDPFASPSPVRP 202


>ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot virus satellite RNA]
           gi|478364|pir||JQ2018 hypothetical 36.5K protein -
           strawberry latent ringspot virus
           gi|312511|emb|CAA49480.1| 36 kDa protein [Strawberry
           latent ringspot virus satellite RNA]
          Length = 331

 Score =  111 bits (277), Expect(2) = 7e-39
 Identities = 58/85 (68%), Positives = 63/85 (74%), Gaps = 2/85 (2%)
 Frame = +1

Query: 49  GMLPKRVRVISKSTGRIFTVGRHDLHLLPSGKRAWVPLRNPTVAGGSSRRERPRKAVTKQ 228
           G+LPKRVRVISK   RIFTVGRHDLH+LPSGKRAWVP+R P  AGGS RRERP     K 
Sbjct: 12  GVLPKRVRVISKRRARIFTVGRHDLHVLPSGKRAWVPVRAPIAAGGSFRRERPPVVSHKT 71

Query: 229 PVVRPIRAP--VKVENRFSPLCVEE 297
             VRPIR P  VK  NRF+ L V+E
Sbjct: 72  QQVRPIRTPTAVKTSNRFASLSVKE 96



 Score = 75.9 bits (185), Expect(2) = 7e-39
 Identities = 45/76 (59%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
 Frame = +3

Query: 333 DAVRAKAS-PAKARKGVVTLVETSRDFTLFEDNTSAVCVIP--GQTPAEAESLKREFAKR 503
           DA+R+ A     ARKGVVTLVET +DF LF D  +   V+P  GQT +EAESL+REF KR
Sbjct: 114 DALRSSAFVKPSARKGVVTLVETEKDFALFCDEFTQNQVVPCPGQTLSEAESLQREFHKR 173

Query: 504 ALVFSGRRLQPVGLPE 551
           A  FSG+RL   GLPE
Sbjct: 174 AFAFSGKRLSVSGLPE 189