BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00023900
         (463 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006842155.1| hypothetical protein AMTR_s00078p00132750 [A...    62   1e-07
ref|XP_001779301.1| transcription initiation factor TFIID, subun...    61   2e-07
ref|XP_001767625.1| transcription initiation factor TFIID, subun...    60   2e-07

>ref|XP_006842155.1| hypothetical protein AMTR_s00078p00132750 [Amborella trichopoda]
            gi|548844204|gb|ERN03830.1| hypothetical protein
            AMTR_s00078p00132750 [Amborella trichopoda]
          Length = 2104

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 49/153 (32%), Positives = 62/153 (40%)
 Frame = +2

Query: 5    ESDNEGNSDLDSYIXXXXXXXXXXXXXXXXXXXXXSQRDKRXXXXXXXXXHKRVSLVQXX 184
            ESD+E NSDLDS+                      S+++K           +        
Sbjct: 1423 ESDSEANSDLDSFAGDLENLLDAEECEEGDTG---SKKNKFESVKGLGMRRRPSQAHAEE 1479

Query: 185  XXXXXXXXXXXLCRMLMDDDDSEEHTKTREGLKENXXXXXXXXXXXXDQMLRNKDDSSTK 364
                       LCRMLMDDD+     K +  +                 +  N D    K
Sbjct: 1480 EIEDEAAEAAELCRMLMDDDEVGWRKKKKTKVAGKDETALGIMDSTVGYVAGNGDHFK-K 1538

Query: 365  TKKVLKRIIRTTQHDGTVTSREVVITDPKEVAR 463
             KKV+KRIIRT Q DGT TS+EVVI DPKEV +
Sbjct: 1539 AKKVVKRIIRTPQPDGTFTSKEVVINDPKEVEK 1571


>ref|XP_001779301.1| transcription initiation factor TFIID, subunit TAF1 [Physcomitrella
            patens] gi|162669313|gb|EDQ55903.1| transcription
            initiation factor TFIID, subunit TAF1 [Physcomitrella
            patens]
          Length = 2253

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
 Frame = +2

Query: 218  LCRMLMDDDDSEEHTKTREGLKENXXXXXXXXXXXX--DQMLRNKDDSSTKTKKVLKRII 391
            L RML  DD++EE  K ++ +  N              D  +  +  +  K KK++KRII
Sbjct: 1511 LRRMLRADDEAEEEQKKKKNILVNKDKKKELESVETPPDLGVGGEGQAGKKKKKIIKRII 1570

Query: 392  RTTQHDGTVTSREVVITDPKEVA 460
            RT + DGT TS+EV+ITDPKEVA
Sbjct: 1571 RTKKPDGTYTSKEVIITDPKEVA 1593


>ref|XP_001767625.1| transcription initiation factor TFIID, subunit TAF1 [Physcomitrella
            patens] gi|162681154|gb|EDQ67584.1| transcription
            initiation factor TFIID, subunit TAF1 [Physcomitrella
            patens]
          Length = 2228

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 45/153 (29%), Positives = 64/153 (41%)
 Frame = +2

Query: 2    AESDNEGNSDLDSYIXXXXXXXXXXXXXXXXXXXXXSQRDKRXXXXXXXXXHKRVSLVQX 181
            +ESD E   DLDS+                       ++ KR          ++    Q 
Sbjct: 1424 SESDGEAGGDLDSFAGDLENLLEAEEGDDGG-----GKKGKREGMGGLGARRRKQIAQQE 1478

Query: 182  XXXXXXXXXXXXLCRMLMDDDDSEEHTKTREGLKENXXXXXXXXXXXXDQMLRNKDDSST 361
                        L RML  DD++EE  K ++ +  +               L  +  +  
Sbjct: 1479 EDIEDEEAEAAELRRMLRADDEAEEEQKKKKSVPVSMEKKELEAVETPPD-LGGEGQAGK 1537

Query: 362  KTKKVLKRIIRTTQHDGTVTSREVVITDPKEVA 460
            K KK++KRIIRT + DGT TS+EV+ITDPKEVA
Sbjct: 1538 KKKKIIKRIIRTRKVDGTYTSKEVIITDPKEVA 1570