BLASTX nr result
ID: Ephedra26_contig00023625
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00023625
(792 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 132 2e-28
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 128 2e-27
ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutr... 124 3e-26
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 122 1e-25
gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro... 122 2e-25
gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare] 120 7e-25
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 117 3e-24
gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare su... 117 6e-24
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 116 8e-24
gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare su... 115 2e-23
gb|ACH53360.1| RNA-directed RNA polymerase 1a [Hordeum vulgare] 114 3e-23
gb|EAY87440.1| hypothetical protein OsI_08849 [Oryza sativa Indi... 114 3e-23
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 114 4e-23
ref|XP_004498314.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 113 9e-23
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 113 9e-23
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 112 1e-22
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 112 1e-22
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 111 3e-22
ref|XP_004953848.1| PREDICTED: probable RNA-dependent RNA polyme... 111 3e-22
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps... 111 3e-22
>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
gi|548853371|gb|ERN11375.1| hypothetical protein
AMTR_s00176p00039530 [Amborella trichopoda]
Length = 1210
Score = 132 bits (331), Expect = 2e-28
Identities = 84/257 (32%), Positives = 130/257 (50%), Gaps = 1/257 (0%)
Frame = +2
Query: 23 LERDLVKRPRRAPVEVATTRVYLGCQVNHNEYCVLWSSTGHVEFELCANMKKVFIVLIDH 202
+E D+V PR + + ++Y G Q++ + +LWS+T +V+ E +KK+F L
Sbjct: 158 MENDIVPNPRVTYHVLESIQLYFGNQISEESFAILWSNT-NVKVEFGFGLKKIFFYLAHT 216
Query: 203 GIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYCAPSVFYKEDS-SSSADDAQGLEYYK 379
G+ Y L + +I ++ + GT+YLV+ + AP +F K S SS D+ YYK
Sbjct: 217 GVDYKLDLYYENIWQIQLRRPGTEGTRYLVLQMQGAPRIFQKPLSFSSDIYDSPLFNYYK 276
Query: 380 YGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQMPFFP 559
D W+R+ DFT + IGQ SS+C+ LPNG + +I+ F YK I G +L+
Sbjct: 277 DFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRIPNIRENFAYYKEIGGAFNLKTGSSF 336
Query: 560 MPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKPVHCIL 739
+ LV Y+IL+ VN LVQ G L PTL +F++LL V L
Sbjct: 337 SHSLHLVPIVHPPDQIKLPYKILFRVNSLVQNGFLVGPTLDTEFYNLLNGLPSPFVERSL 396
Query: 740 SALDEMYYSSPCFNPEK 790
+ + ++ C P K
Sbjct: 397 EDISRL--TNCCLEPAK 411
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 128 bits (322), Expect = 2e-27
Identities = 81/263 (30%), Positives = 132/263 (50%), Gaps = 2/263 (0%)
Frame = +2
Query: 8 LSVDPLERDLVKRPRRAPVEVATTRVYLGCQVNHNEYCVLWSSTGHVEFELCANMKKVFI 187
L+ P++RD++ +PR + + ++ G Q + ++ +WS +V M+K+
Sbjct: 77 LNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGN-NVSVNFGLGMRKLHF 135
Query: 188 VLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYCAPSVFYKE-DSSSSADDAQG 364
L + +Y L F +I ++ + + KYL++ LY AP ++ ++ SSS+ +
Sbjct: 136 FLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIYERDVPSSSNVFEDPL 195
Query: 365 LEYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQ 544
L Y++ D W+RTTDFT + GIG SS+C+ELPN + + F+ YK +G L+
Sbjct: 196 LNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNENFFYYKENEGTFVLE 255
Query: 545 MPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKP 724
LV Y IL+ VNLLVQ G L L F+ L+ P R P
Sbjct: 256 SGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSMLDDIFYRLVDPNR-MP 314
Query: 725 VHCILSALDEMYY-SSPCFNPEK 790
V CI AL+++Y+ C+ P K
Sbjct: 315 VRCIEYALEKLYHLKECCYEPSK 337
>ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutrema salsugineum]
gi|557094740|gb|ESQ35322.1| hypothetical protein
EUTSA_v10006629mg [Eutrema salsugineum]
Length = 1108
Score = 124 bits (312), Expect = 3e-26
Identities = 79/258 (30%), Positives = 126/258 (48%), Gaps = 2/258 (0%)
Frame = +2
Query: 8 LSVDPLERDLVKRPRRAPVEVATTRVYLGCQVNHNEYCVLWSSTGHVEFELCANMKKVFI 187
L +E+D+V +PR + +++ ++Y GCQV + VLWS+ +V M+K+
Sbjct: 77 LKASEVEQDIVPKPRASLHKISDLKIYFGCQVTPKKLSVLWSAQ-NVCVSFGTGMRKLHF 135
Query: 188 VLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYCAPSVFYKEDSSSSADDAQGL 367
+ + Y L + +I R+ Y R +K+LV+ + AP +F KED + L
Sbjct: 136 SISWYEKDYRLELPYENIWRIDLYSPQGRASKFLVIQVIGAPKIFEKEDQPVNLLFGM-L 194
Query: 368 EYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSL-- 541
+++ GSD WIRTTDFT + IGQ SS C+ELP D + F NY + L
Sbjct: 195 DFFSDGSDEQWIRTTDFTSSSCIGQSSSFCLELPRQLNVPDFRENFANYAEHEAGTFLIE 254
Query: 542 QMPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREK 721
+ + LV ++IL+ VN LVQ + P L DF+ LL P + +
Sbjct: 255 SGSSYSSDATNLVPVVDPPPGFDLPFEILFKVNALVQSACIPGPVLDLDFYQLLDPQKHE 314
Query: 722 PVHCILSALDEMYYSSPC 775
I +L++++Y C
Sbjct: 315 RA-LIDHSLEKLFYLKEC 331
>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
max] gi|571439308|ref|XP_006574822.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
max] gi|571439310|ref|XP_006574823.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
max]
Length = 1125
Score = 122 bits (306), Expect = 1e-25
Identities = 82/263 (31%), Positives = 127/263 (48%), Gaps = 2/263 (0%)
Frame = +2
Query: 8 LSVDPLERDLVKRPRRAPVEVATTRVYLGCQVNHNEYCVLWSSTGHVEFELCANMKKVFI 187
L +ERD+V RPR + ++ GCQ++ + VLW V + M+K+
Sbjct: 80 LKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVLWKKQD-VIVNFGSGMRKMHF 138
Query: 188 VLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYCAPSVFYKE-DSSSSADDAQG 364
+ + ++Y L S+ +I ++ + + T+YL++ L AP VF + +S++ D
Sbjct: 139 LFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLGAPRVFENDVPTSTNIFDDPL 198
Query: 365 LEYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQ 544
++K D WIR DFT IGQ S+IC+ELPNG + + + F Y+ + +LQ
Sbjct: 199 FNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQLPNFRENFAYYEESERQYTLQ 258
Query: 545 MPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKP 724
LV Y IL+ VN LVQ L P L DF+ L+ P R P
Sbjct: 259 TGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACLAGPALDGDFYRLVDP-RRMP 317
Query: 725 VHCILSALDEMYYSSP-CFNPEK 790
I AL+++YYS C+ P K
Sbjct: 318 REFIEYALEKIYYSKEFCYEPTK 340
>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao]
gi|508709489|gb|EOY01386.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao]
Length = 1109
Score = 122 bits (305), Expect = 2e-25
Identities = 80/263 (30%), Positives = 131/263 (49%), Gaps = 2/263 (0%)
Frame = +2
Query: 8 LSVDPLERDLVKRPRRAPVEVATTRVYLGCQVNHNEYCVLWSSTGHVEFELCANMKKVFI 187
L +E D+V +PR + ++ GCQV++ ++ VLW V M+K+
Sbjct: 76 LKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWEEVD-VTVNFGMGMRKLQF 134
Query: 188 VLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYCAPSVFYKEDSSSS-ADDAQG 364
+L H ++Y L + +I ++ + ++ +KYL++ L+ AP ++ K+ SS +
Sbjct: 135 LLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRIYEKDVRSSGLVFENPL 194
Query: 365 LEYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQ 544
L Y+ D W+RTTDFT + IGQ S +C+ELP + + + F YK +G L+
Sbjct: 195 LNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFRENFAYYKESEGKFVLE 254
Query: 545 MPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKP 724
LV Y+IL+ +NLLVQ G + P L +F+ L+ P R
Sbjct: 255 SGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPALDANFYRLVNPCRIDK 314
Query: 725 VHCILSALDEMYY-SSPCFNPEK 790
V+ I AL+++YY CF P K
Sbjct: 315 VY-IDHALEKLYYLKECCFEPSK 336
>gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]
Length = 1115
Score = 120 bits (300), Expect = 7e-25
Identities = 82/263 (31%), Positives = 126/263 (47%), Gaps = 2/263 (0%)
Frame = +2
Query: 2 HVLSVDPLERDLVKRPRRAPVEVATTRVYLGCQVNHNEYCVLWSSTGHVEFELCANMKKV 181
H L ERD+V RPR + +++ GC + VLWS T +V E MK++
Sbjct: 79 HYLKARYAERDIVPRPRTTIFNLQGAKLHFGCLLKERVLSVLWSGT-NVSVEFGFAMKRI 137
Query: 182 FIVLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYCAPSVFYKEDS-SSSADDA 358
LI + KY L S+ SI + + K+L++ + AP ++ + S S D
Sbjct: 138 DFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQVQAAPKIYEQNIRLSGSMYDD 197
Query: 359 QGLEYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLS 538
Y++ +D W RTTDFT + IGQ +C+ELP+ +I+ F Y+V +
Sbjct: 198 PLFNYFRDDTDDQWTRTTDFTPSASIGQSYILCLELPHICYLPNIREYFVYYEVHNDIFN 257
Query: 539 LQMPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTRE 718
LQ + + V Y+IL+ +N LVQ G L+ PTL +F+ L+ P E
Sbjct: 258 LQPGYSYSSNTCFVPVVKSHYFTDVPYEILFKINHLVQNGTLSGPTLDDNFYRLVSPGYE 317
Query: 719 KPVHCILSALDEM-YYSSPCFNP 784
+ + I AL++M Y C NP
Sbjct: 318 R-IDRIKRALEKMSYLKKTCLNP 339
>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca
subsp. vesca]
Length = 1119
Score = 117 bits (294), Expect = 3e-24
Identities = 79/253 (31%), Positives = 124/253 (49%), Gaps = 2/253 (0%)
Frame = +2
Query: 32 DLVKRPRRAPVEVATTRVYLGCQVNHNEYCVLWSSTGHVEFELCANMKKVFIVLIDHGIK 211
D+V +PR + +++GCQV +++ VLW T V + M+ + L+
Sbjct: 83 DIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWG-TAEVSVDFGFGMRNLQFRLLYRQKV 141
Query: 212 YMLVSSFGSIQRMHHYGSASRGTKYLVMPLYCAPSVFYKEDSSSSADDAQGLEYYKYGSD 391
Y L S+ +I ++ + R KYLV+ LY P ++ +E SS + + + Y++ D
Sbjct: 142 YRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPRIYQQEVCSSGGNGYEDMNYFRDPDD 201
Query: 392 TNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQMPFFPMPTS 571
W+RTTDFT IGQ SS+C+ L + + D + F YK G L+
Sbjct: 202 --WVRTTDFTPGSCIGQSSSLCLVLTSDGELPDFEENFAYYKKTDGQFILENGSTFSRNR 259
Query: 572 RLVXXXXXXXXXXXXYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTR-EKPVHCILSAL 748
LV Y IL+ +NLLVQ+G L+ PTL +F+ L+ P R +P CI AL
Sbjct: 260 DLVPIVGSPAGIDLPYDILFKINLLVQQGCLSGPTLDNNFYRLVDPRRISRP--CIEFAL 317
Query: 749 DEM-YYSSPCFNP 784
D++ C+ P
Sbjct: 318 DKLSNLKESCYEP 330
>gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 117 bits (292), Expect = 6e-24
Identities = 85/262 (32%), Positives = 120/262 (45%), Gaps = 3/262 (1%)
Frame = +2
Query: 8 LSVDPLERDLVKRPRRAPVEVATTRVYLGCQVNHNEYCVLWSSTGHVEFELCANMKKVFI 187
L V P ERD++ +PR A + ++ GC + VLWS TG V E MKK+
Sbjct: 81 LKVRPAERDIILKPRTALFNLEDATLHFGCLLRERVLSVLWSGTG-VSVEFGFAMKKIDF 139
Query: 188 VLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYCAPSVFYKE--DSSSSADDAQ 361
L + KY L S+ SI + Y K+L++ + AP ++ + S S DD
Sbjct: 140 CLTYNLKKYKLELSYESIWEIQLYHPPGSQKKFLLIQVMAAPKIYEQNLWHSGSMYDDPL 199
Query: 362 GLEYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSL 541
Y++ +D W RTTDFT IGQ +C+ELP +I+ F YK +
Sbjct: 200 -FNYFRDDTDDQWTRTTDFTPLASIGQSYILCLELPADCYLPNIREYFVYYKNHNHDFHC 258
Query: 542 QMPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREK 721
S V Y+IL+ +N LVQ G+L+ PTL +F+SL+ P
Sbjct: 259 MRGHSYSSNSCFVPIVKSQYFTDVPYEILFKINNLVQNGILSGPTLDDNFYSLVSPGYVC 318
Query: 722 PVHCILSALDEM-YYSSPCFNP 784
H I AL+ M Y C NP
Sbjct: 319 IDH-IKHALENMSYLKKTCLNP 339
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 116 bits (291), Expect = 8e-24
Identities = 77/258 (29%), Positives = 125/258 (48%), Gaps = 2/258 (0%)
Frame = +2
Query: 8 LSVDPLERDLVKRPRRAPVEVATTRVYLGCQVNHNEYCVLWSSTGHVEFELCANMKKVFI 187
L+ +E+D V RPR + ++ GC++++ ++ VLW +V M+K+
Sbjct: 79 LNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVLWRGV-NVTVNFGFGMRKINF 137
Query: 188 VLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYCAPSVFYKEDSSSSA-DDAQG 364
+L G +Y L + +I + + + TKYL++ L AP +F K S ++
Sbjct: 138 LLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPV 197
Query: 365 LEYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQ 544
++K D W+RTTDFT + IGQ + +CMELP + D K F YK + L+
Sbjct: 198 FNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLE 257
Query: 545 MPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREK- 721
+ LV Y+IL+ +NLLVQ G + P L +F+ L+ P R
Sbjct: 258 TGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPV 317
Query: 722 PVHCILSALDEMYYSSPC 775
+ CI ALD++Y+ C
Sbjct: 318 SISCIEHALDKLYHLKEC 335
>gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 115 bits (288), Expect = 2e-23
Identities = 81/263 (30%), Positives = 124/263 (47%), Gaps = 2/263 (0%)
Frame = +2
Query: 2 HVLSVDPLERDLVKRPRRAPVEVATTRVYLGCQVNHNEYCVLWSSTGHVEFELCANMKKV 181
H L ERD+V RPR + +++ GC + VLWS T V E MK++
Sbjct: 79 HYLKARYAERDIVPRPRTTIFNLQGAKLHFGCLLKERVLSVLWSGTD-VSVEFGFAMKRI 137
Query: 182 FIVLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYCAPSVFYKEDS-SSSADDA 358
LI + KY L S+ SI + + K+L++ + AP ++ + S S D
Sbjct: 138 DFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQVQAAPKIYEQNIRLSGSMYDD 197
Query: 359 QGLEYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLS 538
Y++ +D W RTTDFT + IGQ + +ELP+ +I+ F Y+V +
Sbjct: 198 PLFNYFRDDTDDQWTRTTDFTPSASIGQSYILSLELPHICYLPNIREYFVYYEVHNDIFN 257
Query: 539 LQMPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTRE 718
LQ + + V Y+IL+ +N LVQ G L+ PTL +F+ L+ P E
Sbjct: 258 LQPGYSYSSNTCFVPVVKSHYFTDVPYEILFKINHLVQNGTLSGPTLDDNFYRLVSPGYE 317
Query: 719 KPVHCILSALDEM-YYSSPCFNP 784
+ + I AL++M Y C NP
Sbjct: 318 R-IDRIKRALEKMSYLKKTCLNP 339
>gb|ACH53360.1| RNA-directed RNA polymerase 1a [Hordeum vulgare]
Length = 1114
Score = 114 bits (286), Expect = 3e-23
Identities = 84/262 (32%), Positives = 119/262 (45%), Gaps = 3/262 (1%)
Frame = +2
Query: 8 LSVDPLERDLVKRPRRAPVEVATTRVYLGCQVNHNEYCVLWSSTGHVEFELCANMKKVFI 187
L V P ERD++ +PR A + ++ GC + VLWS TG V E MKK+
Sbjct: 81 LKVRPAERDIILKPRTALFNLEDATLHFGCLLRERVLSVLWSGTG-VSVEFGFAMKKIDF 139
Query: 188 VLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYCAPSVFYKE--DSSSSADDAQ 361
L + KY L S+ SI + Y K+L++ + AP ++ + S S DD
Sbjct: 140 CLTYNLKKYKLELSYESIWEIQLYHPPGSQKKFLLIQVMAAPKIYEQNLWHSGSMYDDPL 199
Query: 362 GLEYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSL 541
Y++ +D W RTTDFT IGQ +C+ELP +I+ F YK +
Sbjct: 200 -FNYFRDDTDDQWTRTTDFTPLASIGQSYILCLELPADCYLPNIREYFAYYKNHNHDFHC 258
Query: 542 QMPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREK 721
S V Y+IL+ +N LVQ G+L+ PTL +F+ L+ P
Sbjct: 259 MRGHSYSSNSCFVPIVKSQYFTDVPYEILFKINNLVQNGILSGPTLDDNFYRLVSPGYVC 318
Query: 722 PVHCILSALDEM-YYSSPCFNP 784
H I AL+ M Y C NP
Sbjct: 319 IDH-IKHALENMSYLKKTCLNP 339
>gb|EAY87440.1| hypothetical protein OsI_08849 [Oryza sativa Indica Group]
Length = 1067
Score = 114 bits (286), Expect = 3e-23
Identities = 79/265 (29%), Positives = 125/265 (47%), Gaps = 4/265 (1%)
Frame = +2
Query: 2 HVLSVDPLERDLVKRPRRAPVEVATTRVYLGCQVNHNEYCVLWSSTGHVEFELCANMKKV 181
+ L V P +RD+V RPR + ++ ++ GC + LWS TG V E N+KK+
Sbjct: 79 YYLKVHPSDRDIVPRPRVSMFKLEDVTLHFGCLLKETILSALWSRTG-VSVEFGFNLKKI 137
Query: 182 F--IVLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYCAPSVFYKEDSSSSADD 355
+ + L + I+Y L S+ SI + TK+L++ + AP ++ + S
Sbjct: 138 YFYLQLPNSSIEYKLELSYESIWEIQLQRPPKSQTKFLLIQVQAAPKIYEQTPRRSGVMY 197
Query: 356 AQGL-EYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGN 532
L Y++ +D W RTTDFT + IGQ +C+E+P +I+ F+ Y +
Sbjct: 198 EDPLFNYFRDHTDDQWTRTTDFTSSSSIGQSYILCLEVPRRCDLPNIRDYFFYYHEYNHD 257
Query: 533 LSLQMPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPT 712
+ +P +S Y+IL+ +N LVQ G L+ PT+ FF L+ P
Sbjct: 258 FECRSGGYPY-SSDTRFVPIVKSRGYVPYEILFKINHLVQNGTLSGPTVDDSFFRLVSPA 316
Query: 713 REKPVHCILSALDEM-YYSSPCFNP 784
P+ I AL+ M Y C NP
Sbjct: 317 -FVPIDHIKRALEMMSYLKKTCLNP 340
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 114 bits (285), Expect = 4e-23
Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 1/257 (0%)
Frame = +2
Query: 8 LSVDPLERDLVKRPRRAPVEVATTRVYLGCQVNHNEYCVLWSSTGHVEFELCANMKKVFI 187
L ++ D++ +PR + ++ GCQ++ +CVLW + +V + + ++K +
Sbjct: 77 LKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKAI-NVSVKFGSGLRKFYF 135
Query: 188 VLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYCAPSVFYKEDSSSSADDAQGL 367
L +Y L S+ +I ++ + TK+L++ L AP ++ K D L
Sbjct: 136 FLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQIYEK--------DVPVL 187
Query: 368 EYY-KYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQ 544
YY K D W+R DFT + IGQ ++C+ELP G++ + + F YK G L+
Sbjct: 188 SYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKENDGKFILE 247
Query: 545 MPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKP 724
LV +QIL+ +N LVQ G L+ PTL FF L+ P R P
Sbjct: 248 SGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRLVDPER-FP 306
Query: 725 VHCILSALDEMYYSSPC 775
+ I AL+++Y+ C
Sbjct: 307 ISFIEHALEKLYHLKEC 323
>ref|XP_004498314.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cicer arietinum]
Length = 1135
Score = 113 bits (282), Expect = 9e-23
Identities = 69/258 (26%), Positives = 124/258 (48%)
Frame = +2
Query: 2 HVLSVDPLERDLVKRPRRAPVEVATTRVYLGCQVNHNEYCVLWSSTGHVEFELCANMKKV 181
+VL ++ D++ +PR + V+ GCQ + ++ VLW + + A ++K+
Sbjct: 77 YVLHSKVIKHDILPKPRIFAYNMDAIGVHFGCQTSKGKHSVLWEHP-NASVKFGARLRKM 135
Query: 182 FIVLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYCAPSVFYKEDSSSSADDAQ 361
++ Y L+ + SI R+ + S + K L+ L AP ++ K+DS S+
Sbjct: 136 YMFFQYLSKDYKLMINLESISRIELHHSCCQTKKLLLFQLRSAPQIYEKDDSESN----- 190
Query: 362 GLEYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSL 541
Y+K D++W R+ DFT + IGQ S++C++LP + + + + NY + L L
Sbjct: 191 ---YFKEAYDSHWFRSVDFTQSCCIGQSSALCLDLPQNTEVPNFRHQYRNYYKVDNTLDL 247
Query: 542 QMPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREK 721
+ + V Y+IL+ +N LVQ G L + +FF ++ P R K
Sbjct: 248 EKQHDFLSNLNFVPMVIPPEALNLPYKILFKINSLVQHGFLPLQAIHTNFFHMIDPQRIK 307
Query: 722 PVHCILSALDEMYYSSPC 775
+ I SAL+++Y C
Sbjct: 308 DAY-IESALNKLYQMKEC 324
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 113 bits (282), Expect = 9e-23
Identities = 80/257 (31%), Positives = 126/257 (49%), Gaps = 1/257 (0%)
Frame = +2
Query: 8 LSVDPLERDLVKRPRRAPVEVATTRVYLGCQVNHNEYCVLWSSTGHVEFELCANMKKVFI 187
L +E D+V +PR + V GCQV+ ++ VLW + +V M+K+
Sbjct: 76 LKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKAD-NVTLNFGTGMRKLEF 134
Query: 188 VLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYCAPSVFYKE-DSSSSADDAQG 364
+L KY L + +I ++ S+ +K+L++ L+ AP ++ KE +S D
Sbjct: 135 LLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIYEKEVPASECVFDDPL 194
Query: 365 LEYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQ 544
L Y+K D W+RTTDFT + IGQ S + +ELP+ + + + F YK +G L L+
Sbjct: 195 LNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNFRENFAYYKENEGRLVLE 254
Query: 545 MPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKP 724
LV ++IL+ VNLLVQ G + P L F+ L+ P R
Sbjct: 255 SGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCRMHK 314
Query: 725 VHCILSALDEMYYSSPC 775
V+ I AL+++YY C
Sbjct: 315 VY-IDHALEKLYYLREC 330
>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
1 [Arabidopsis lyrata subsp. lyrata]
Length = 1107
Score = 112 bits (281), Expect = 1e-22
Identities = 77/267 (28%), Positives = 127/267 (47%), Gaps = 6/267 (2%)
Frame = +2
Query: 8 LSVDPLERDLVKRPRRAPVEVATTRVYLGCQVNHNEYCVLWSSTGHVEFELCANMKKVFI 187
L+ +E+D+V +PR + ++ ++Y GCQV+ LWS+ V M+K+
Sbjct: 78 LNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQTLLTLWSAQD-VSVSFGIGMRKLHF 136
Query: 188 VLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYCAPSVFYKEDSSSSADDAQGL 367
+ Y L S+ +I ++ + R +K+LV+ + AP +F KED + +
Sbjct: 137 SFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFEKEDQPINLLFGM-M 195
Query: 368 EYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSL-- 541
++Y GSD WIRTTDFT + IGQ ++ C+ELP D + F NY + + L
Sbjct: 196 DFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASTYLIE 255
Query: 542 QMPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLNWPTLKRDFFSLLQP---T 712
+ ++LV ++IL+ +N LVQ L P L D + LL P
Sbjct: 256 SGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNACLPGPALDLDVYQLLNPKKID 315
Query: 713 REKPVHCILSALDEMYY-SSPCFNPEK 790
R HC L++++Y C+ P +
Sbjct: 316 RALIDHC----LEKLFYLGESCYEPAR 338
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 112 bits (281), Expect = 1e-22
Identities = 79/257 (30%), Positives = 125/257 (48%), Gaps = 1/257 (0%)
Frame = +2
Query: 8 LSVDPLERDLVKRPRRAPVEVATTRVYLGCQVNHNEYCVLWSSTGHVEFELCANMKKVFI 187
L +E D+V +PR + V C V+ ++ VLW + +V M+K+
Sbjct: 76 LKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWKAD-NVTLNFGTGMRKLEF 134
Query: 188 VLIDHGIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYCAPSVFYKE-DSSSSADDAQG 364
+L KY L + +I ++ S+ +K+L++ L+ AP ++ KE +S D
Sbjct: 135 LLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIYEKEVPASECVFDDPL 194
Query: 365 LEYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQ 544
L Y+K D W+RTTDFT + IGQ S +C+ELP+ + + + F YK +G L L+
Sbjct: 195 LNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNFRENFAYYKENEGRLVLE 254
Query: 545 MPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKP 724
LV ++IL+ VNLLVQ G + P L F+ L+ P R
Sbjct: 255 SGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCRMHK 314
Query: 725 VHCILSALDEMYYSSPC 775
V+ I AL+++YY C
Sbjct: 315 VY-IDHALEKLYYLREC 330
>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1133
Score = 111 bits (278), Expect = 3e-22
Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 1/252 (0%)
Frame = +2
Query: 23 LERDLVKRPRRAPVEVATTRVYLGCQVNHNEYCVLWSSTGHVEFELCANMKKVFIVLIDH 202
+ERD+V +PR + ++ GCQ++ ++ LW G+V + ++++ L
Sbjct: 82 MERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWR-VGNVSVDFGLGLRRLNFYLTYG 140
Query: 203 GIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYCAPSVFYKEDSSSSADDAQGL-EYYK 379
++Y L + ++ ++ + + KYL++ L AP V+ KE S L Y+K
Sbjct: 141 PVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPRVYEKEVRISFDILENPLFNYFK 200
Query: 380 YGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSLQMPFFP 559
D W+R TDFT + IG S++ +ELP G D++ F YK + L+
Sbjct: 201 DTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDLRENFVYYKESEERFILESGSSF 260
Query: 560 MPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKPVHCIL 739
LV ++ ++ +N+L+Q G L+ PTL DF+ L+ P R + V CI
Sbjct: 261 SRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGPTLDVDFYRLVDPQRIRNVDCIN 320
Query: 740 SALDEMYYSSPC 775
AL++++ C
Sbjct: 321 YALEKLFNLKEC 332
>ref|XP_004953848.1| PREDICTED: probable RNA-dependent RNA polymerase 1-like [Setaria
italica]
Length = 1123
Score = 111 bits (278), Expect = 3e-22
Identities = 81/263 (30%), Positives = 124/263 (47%), Gaps = 4/263 (1%)
Frame = +2
Query: 8 LSVDPLERDLVKRPRRAPVEVATTRVYLGCQVNHNEYCVLWSSTGHVEFELCANMKKVFI 187
L P +RD+V RPR A + ++LGC V N L+S ++ + +MKK++
Sbjct: 80 LKARPADRDIVPRPRIAMFSLDAAALHLGCLVKENILYTLFS-VRNISVQFGFDMKKIYF 138
Query: 188 VLIDHGIKYMLVSSFGSIQRM--HHYGSASRGTKYLVMPLYCAPSVF-YKEDSSSSADDA 358
L + IKY L S+ SI M H + TK+L+ + AP ++ S +
Sbjct: 139 YLSYNLIKYKLELSYESIWEMQLHRPPAYLSQTKFLLFQVQAAPKIYELLPRRSGLMYED 198
Query: 359 QGLEYYKYGSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLS 538
+++ +D W RT DFT + IGQ S +C+E+P + +I F YK +
Sbjct: 199 PFFNWFRDDTDEQWTRTIDFTPSASIGQSSILCLEVPQQCELPNIADYFVYYKEHNLDFE 258
Query: 539 LQMPFFPMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTRE 718
Q + + V Y+IL+ +N LVQ G L+ PTL +FF L+ P +
Sbjct: 259 CQKGYSYSCGNSFVPIVKSPDYIEVPYEILFKINHLVQNGTLSGPTLDDNFFCLVSP-KH 317
Query: 719 KPVHCILSALDEM-YYSSPCFNP 784
P+ I AL +M Y S C NP
Sbjct: 318 VPIDHIKRALLKMSYLKSTCLNP 340
>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
gi|482575337|gb|EOA39524.1| hypothetical protein
CARUB_v10008144mg [Capsella rubella]
Length = 1107
Score = 111 bits (277), Expect = 3e-22
Identities = 72/253 (28%), Positives = 125/253 (49%), Gaps = 2/253 (0%)
Frame = +2
Query: 23 LERDLVKRPRRAPVEVATTRVYLGCQVNHNEYCVLWSSTGHVEFELCANMKKVFIVLIDH 202
+E+D+V +PR + ++ ++Y GCQV+ + LWS+ +V M+K+ + +
Sbjct: 82 MEQDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLWSAH-NVCVSFGTGMRKLHFSMSWY 140
Query: 203 GIKYMLVSSFGSIQRMHHYGSASRGTKYLVMPLYCAPSVFYKEDSSSSADDAQGLEYYKY 382
Y L S+ +I ++ + +K+LV+ + AP +F KED + +++Y
Sbjct: 141 QKDYRLELSYENIWQIDLHSPQGGSSKFLVIQVIGAPKIFEKEDQPVNFLFGM-MDFYSD 199
Query: 383 GSDTNWIRTTDFTGNFGIGQCSSICMELPNGAKDKDIKGTFYNYKVIKGNLSL--QMPFF 556
GSD WIRTTDFT + IGQ ++ C+ELP D + F NY + + L +
Sbjct: 200 GSDEQWIRTTDFTSSSCIGQSTAFCLELPVHVHVPDFRENFANYAEHRASTFLIQSGSSY 259
Query: 557 PMPTSRLVXXXXXXXXXXXXYQILYHVNLLVQEGVLNWPTLKRDFFSLLQPTREKPVHCI 736
++LV ++IL+ VN LVQ L P L +F+ LL P + I
Sbjct: 260 SSNANKLVPVVDPPPGFDLPFEILFKVNTLVQNACLPGPALDLEFYQLLNPKKYDRA-LI 318
Query: 737 LSALDEMYYSSPC 775
+L+++++ C
Sbjct: 319 DHSLEKLFHLGEC 331