BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00023160
         (562 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002519950.1| RNA polymerase beta chain (chloroplast) [Eph...   370   e-100
dbj|BAH11233.1| RNA polymerase beta chain (chloroplast) [Welwits...   285   7e-75
ref|YP_001876572.1| RNA polymerase beta subunit [Welwitschia mir...   285   7e-75
ref|YP_008082190.1| RNA polymerase beta subunit (chloroplast) [G...   270   2e-70
dbj|BAN16890.1| RNA polymerase beta chain (chloroplast) [Gnetum ...   267   1e-69
ref|YP_002519787.1| RNA polymerase beta chain [Gnetum parvifoliu...   267   1e-69
ref|YP_008082826.1| RNA polymerase beta subunit (chloroplast) [P...   250   2e-64
ref|YP_004891746.1| RNA polymerase beta chain (chloroplast) [Pic...   250   2e-64
ref|YP_002905075.1| RNA polymerase beta subunit [Picea sitchensi...   250   2e-64
ref|YP_004891192.1| RNA polymerase beta chain (chloroplast) [Lar...   249   3e-64
gb|ACP52193.1| RNA polymerase beta subunit [Larix occidentalis]       249   3e-64
gb|AET47520.1| RNA polymerase beta subunit (chloroplast) [Pinus ...   249   4e-64
gb|AET45799.1| RNA polymerase beta subunit (chloroplast) [Pinus ...   249   4e-64
ref|YP_004276368.1| RNA polymerase beta subunit [Pinus nelsonii]...   249   4e-64
gb|ACP52002.1| RNA polymerase beta subunit [Pinus leiophylla var...   249   4e-64
ref|NP_817162.1| RNA polymerase beta subunit [Pinus koraiensis] ...   248   6e-64
gb|AET49392.1| RNA polymerase beta subunit (chloroplast) [Pinus ...   248   6e-64
gb|AET49321.1| RNA polymerase beta subunit (chloroplast) [Pinus ...   248   6e-64
gb|AET48742.1| RNA polymerase beta subunit (chloroplast) [Pinus ...   248   6e-64
gb|AET47664.1| RNA polymerase beta subunit (chloroplast) [Pinus ...   248   6e-64

>ref|YP_002519950.1| RNA polymerase beta chain (chloroplast) [Ephedra equisetina]
            gi|220983551|dbj|BAH11318.1| RNA polymerase beta chain
            (chloroplast) [Ephedra equisetina]
          Length = 1100

 Score =  370 bits (951), Expect = e-100
 Identities = 185/187 (98%), Positives = 187/187 (100%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPL 181
            EDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPL
Sbjct: 464  EDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPL 523

Query: 182  QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATS 361
            QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQ+ALDSRILATS
Sbjct: 524  QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQVALDSRILATS 583

Query: 362  IQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADG 541
            IQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQ+PQVNQGNYVKRGQFMADG
Sbjct: 584  IQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQKPQVNQGNYVKRGQFMADG 643

Query: 542  STTIGGE 562
            STTIGGE
Sbjct: 644  STTIGGE 650


>dbj|BAH11233.1| RNA polymerase beta chain (chloroplast) [Welwitschia mirabilis]
          Length = 1108

 Score =  285 bits (728), Expect = 7e-75
 Identities = 136/187 (72%), Positives = 162/187 (86%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPL 181
            ++ ++SYLLP+ED++YRIAL N LAVD K+PEKKNTPTQYRQ+FLS+AWEQIHFRSILP 
Sbjct: 471  KEQLISYLLPSEDESYRIALGNFLAVDQKIPEKKNTPTQYRQEFLSIAWEQIHFRSILPF 530

Query: 182  QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATS 361
            QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVP LQPEKCIVGTGLE Q+ALDS  LA S
Sbjct: 531  QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPPLQPEKCIVGTGLESQVALDSGNLAIS 590

Query: 362  IQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADG 541
             QEGRI+Y D++TI+SS    T +  L+ YQRSNSN L++Q+P +NQG Y+K+GQ +ADG
Sbjct: 591  KQEGRIKYIDAETIISSSKGSTTQIELQTYQRSNSNTLMYQKPHINQGKYIKKGQILADG 650

Query: 542  STTIGGE 562
            + T+GGE
Sbjct: 651  AVTVGGE 657


>ref|YP_001876572.1| RNA polymerase beta subunit [Welwitschia mirabilis]
            gi|163311627|gb|ABY26785.1| RNA polymerase beta subunit
            [Welwitschia mirabilis]
          Length = 1108

 Score =  285 bits (728), Expect = 7e-75
 Identities = 136/187 (72%), Positives = 162/187 (86%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPL 181
            ++ ++SYLLP+ED++YRIAL N LAVD K+PEKKNTPTQYRQ+FLS+AWEQIHFRSILP 
Sbjct: 471  KEQLISYLLPSEDESYRIALGNFLAVDQKIPEKKNTPTQYRQEFLSIAWEQIHFRSILPF 530

Query: 182  QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATS 361
            QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVP LQPEKCIVGTGLE Q+ALDS  LA S
Sbjct: 531  QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPPLQPEKCIVGTGLESQVALDSGNLAIS 590

Query: 362  IQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADG 541
             QEGRI+Y D++TI+SS    T +  L+ YQRSNSN L++Q+P +NQG Y+K+GQ +ADG
Sbjct: 591  KQEGRIKYIDAETIISSSKGNTTQIELQTYQRSNSNTLMYQKPHINQGKYIKKGQILADG 650

Query: 542  STTIGGE 562
            + T+GGE
Sbjct: 651  AVTVGGE 657


>ref|YP_008082190.1| RNA polymerase beta subunit (chloroplast) [Gnetum montanum]
            gi|490345015|gb|AGL11035.1| RNA polymerase beta subunit
            (chloroplast) [Gnetum montanum]
          Length = 1109

 Score =  270 bits (689), Expect = 2e-70
 Identities = 132/183 (72%), Positives = 152/183 (83%)
 Frame = +2

Query: 14   VSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 193
            + YL P+ED  YRIAL N L+VD K+PEKKNTPTQY Q+FLS+AWEQIHFR  LPLQYFS
Sbjct: 476  IVYLSPSEDVYYRIALGNCLSVDQKIPEKKNTPTQYHQEFLSIAWEQIHFRCFLPLQYFS 535

Query: 194  IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 373
            IGVSLIPFLEHNDATRALMGSNMQRQAVP +QPEKCIVGTGLEGQ+ALDS  LA S QEG
Sbjct: 536  IGVSLIPFLEHNDATRALMGSNMQRQAVPSVQPEKCIVGTGLEGQVALDSGALAISTQEG 595

Query: 374  RIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTI 553
            RI+Y D+ TIVS L   T +T L+IYQRSNSN L+HQ+   +Q  YV++GQ +ADG+ T+
Sbjct: 596  RIQYSDAATIVSVLKGNTTQTELQIYQRSNSNTLMHQKTHASQAKYVRKGQILADGAATL 655

Query: 554  GGE 562
            GGE
Sbjct: 656  GGE 658


>dbj|BAN16890.1| RNA polymerase beta chain (chloroplast) [Gnetum ula]
          Length = 1110

 Score =  267 bits (683), Expect = 1e-69
 Identities = 131/183 (71%), Positives = 151/183 (82%)
 Frame = +2

Query: 14   VSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 193
            + YL P+ED  YRIAL N L+VD K+PEKKNTPTQY Q+FLS+AWEQIHFR  L LQYFS
Sbjct: 477  IVYLSPSEDVYYRIALGNCLSVDQKIPEKKNTPTQYHQEFLSIAWEQIHFRCFLTLQYFS 536

Query: 194  IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 373
            +GVSLIPFLEHNDATRALMGSNMQRQAVP +QPEKCIVGTGLEGQ+ALDS  LA S QEG
Sbjct: 537  VGVSLIPFLEHNDATRALMGSNMQRQAVPSVQPEKCIVGTGLEGQVALDSGALAISTQEG 596

Query: 374  RIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTI 553
            RI+Y D+ TIVS L   T +T L+IYQRSNSN L+HQ+  V+Q  YV++GQ +ADG  T+
Sbjct: 597  RIQYSDAATIVSVLKGNTTQTELQIYQRSNSNTLMHQKTHVSQAKYVRKGQILADGGATL 656

Query: 554  GGE 562
            GGE
Sbjct: 657  GGE 659


>ref|YP_002519787.1| RNA polymerase beta chain [Gnetum parvifolium]
            gi|158513793|sp|A6BM50.1|RPOB_GNEPA RecName:
            Full=DNA-directed RNA polymerase subunit beta; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta; Short=RNA polymerase subunit beta
            gi|149941456|dbj|BAF64895.1| RNA polymerase beta subunit
            [Gnetum parvifolium] gi|220983530|dbj|BAH11298.1| RNA
            polymerase beta chain (chloroplast) [Gnetum parvifolium]
          Length = 1108

 Score =  267 bits (683), Expect = 1e-69
 Identities = 131/183 (71%), Positives = 151/183 (82%)
 Frame = +2

Query: 14   VSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 193
            + YL P+ED  YRIAL N L+VD K+PEKKNTPTQY Q+FLS+AWEQIHFR  LPLQYFS
Sbjct: 476  IVYLSPSEDVYYRIALGNCLSVDQKIPEKKNTPTQYHQEFLSIAWEQIHFRCFLPLQYFS 535

Query: 194  IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 373
            IGVSLIPFLEHNDATRALMGSNMQRQAVP +QPEKCIVGTGLEGQ+ALDS  LA S QEG
Sbjct: 536  IGVSLIPFLEHNDATRALMGSNMQRQAVPSVQPEKCIVGTGLEGQVALDSGALAISTQEG 595

Query: 374  RIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTI 553
            RI+Y D+ TIVS L   T +T L+IYQRSNSN L+HQ+   +Q  YV++GQ +ADG+  +
Sbjct: 596  RIQYSDAATIVSVLKGNTTQTELQIYQRSNSNTLMHQKTHASQAKYVRKGQILADGAAML 655

Query: 554  GGE 562
            GGE
Sbjct: 656  GGE 658


>ref|YP_008082826.1| RNA polymerase beta subunit (chloroplast) [Picea abies]
            gi|502524860|emb|CCW23110.1| RNA polymerase beta subunit
            (chloroplast) [Picea abies]
          Length = 1076

 Score =  250 bits (638), Expect = 2e-64
 Identities = 125/189 (66%), Positives = 149/189 (78%), Gaps = 2/189 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 467  EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL QPEKCI GTGLEGQ ALDS  +A
Sbjct: 526  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFQPEKCIAGTGLEGQAALDSGSVA 585

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T L IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 586  IATQEGRIEYIDAVNITSSVNGDTVRTELVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 645

Query: 536  DGSTTIGGE 562
            DG+ T+GGE
Sbjct: 646  DGAATVGGE 654


>ref|YP_004891746.1| RNA polymerase beta chain (chloroplast) [Picea morrisonicola]
            gi|307683667|dbj|BAJ19812.1| RNA polymerase beta chain
            [Picea morrisonicola] gi|347977527|dbj|BAK86484.1| RNA
            polymerase beta chain (chloroplast) [Picea morrisonicola]
          Length = 1076

 Score =  250 bits (638), Expect = 2e-64
 Identities = 125/189 (66%), Positives = 149/189 (78%), Gaps = 2/189 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 467  EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL QPEKCI GTGLEGQ ALDS  +A
Sbjct: 526  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFQPEKCIAGTGLEGQAALDSGSVA 585

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T L IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 586  IATQEGRIEYIDAVNITSSVNGDTVRTELVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 645

Query: 536  DGSTTIGGE 562
            DG+ T+GGE
Sbjct: 646  DGAATVGGE 654


>ref|YP_002905075.1| RNA polymerase beta subunit [Picea sitchensis]
            gi|226875285|gb|ACO89024.1| RNA polymerase beta subunit
            [Picea sitchensis]
          Length = 1076

 Score =  250 bits (638), Expect = 2e-64
 Identities = 125/189 (66%), Positives = 149/189 (78%), Gaps = 2/189 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 467  EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL QPEKCI GTGLEGQ ALDS  +A
Sbjct: 526  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFQPEKCIAGTGLEGQAALDSGSVA 585

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T L IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 586  IATQEGRIEYIDAVNITSSVNGDTVRTELVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 645

Query: 536  DGSTTIGGE 562
            DG+ T+GGE
Sbjct: 646  DGAATVGGE 654


>ref|YP_004891192.1| RNA polymerase beta chain (chloroplast) [Larix decidua]
            gi|307683573|dbj|BAJ19765.1| RNA polymerase beta chain
            [Larix decidua] gi|347977543|dbj|BAK86499.1| RNA
            polymerase beta chain (chloroplast) [Larix decidua]
          Length = 1076

 Score =  249 bits (636), Expect = 3e-64
 Identities = 124/189 (65%), Positives = 149/189 (78%), Gaps = 2/189 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 467  EEHMV-YLLPGEDEDEYYRIATGNYLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 526  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 585

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T L IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 586  IATQEGRIEYIDATNITSSVNGDTVRTELVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 645

Query: 536  DGSTTIGGE 562
            DG+ T+GGE
Sbjct: 646  DGAATVGGE 654


>gb|ACP52193.1| RNA polymerase beta subunit [Larix occidentalis]
          Length = 1076

 Score =  249 bits (636), Expect = 3e-64
 Identities = 124/189 (65%), Positives = 149/189 (78%), Gaps = 2/189 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 467  EEHMV-YLLPGEDEDEYYRIATGNYLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 526  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 585

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T L IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 586  IATQEGRIEYIDATNITSSVNGDTVRTELVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 645

Query: 536  DGSTTIGGE 562
            DG+ T+GGE
Sbjct: 646  DGAATVGGE 654


>gb|AET47520.1| RNA polymerase beta subunit (chloroplast) [Pinus lumholtzii]
            gi|356999718|gb|AET47592.1| RNA polymerase beta subunit
            (chloroplast) [Pinus leiophylla]
            gi|357000519|gb|AET48382.1| RNA polymerase beta subunit
            (chloroplast) [Pinus greggii]
          Length = 1074

 Score =  249 bits (635), Expect = 4e-64
 Identities = 123/189 (65%), Positives = 149/189 (78%), Gaps = 2/189 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 465  EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQTTPARYRQEFIVIAWEQIHFRSIF 523

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 524  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 583

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQ+ QG  VK+GQ +A
Sbjct: 584  IATQEGRIEYIDAVNITSSVNGDTVRTESVIYQRSNTNTCTHQKPQIRQGECVKKGQILA 643

Query: 536  DGSTTIGGE 562
            DG+TT+GGE
Sbjct: 644  DGATTVGGE 652


>gb|AET45799.1| RNA polymerase beta subunit (chloroplast) [Pinus roxburghii]
          Length = 1075

 Score =  249 bits (635), Expect = 4e-64
 Identities = 123/189 (65%), Positives = 150/189 (79%), Gaps = 2/189 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNE--DKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP E  D+ YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 466  EEHMV-YLLPGEYEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 524

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 525  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 584

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQ++QG +VK+GQ +A
Sbjct: 585  IATQEGRIEYIDAVNITSSVNGDTVRTESVIYQRSNTNTCTHQKPQIHQGEFVKKGQILA 644

Query: 536  DGSTTIGGE 562
            DG+TT+GGE
Sbjct: 645  DGATTVGGE 653


>ref|YP_004276368.1| RNA polymerase beta subunit [Pinus nelsonii]
            gi|323522686|gb|ADX94934.1| RNA polymerase beta subunit
            [Pinus nelsonii]
          Length = 1075

 Score =  249 bits (635), Expect = 4e-64
 Identities = 124/189 (65%), Positives = 149/189 (78%), Gaps = 2/189 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 466  EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 524

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 525  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 584

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 585  IATQEGRIEYIDAVNITSSINGNTVRTESVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 644

Query: 536  DGSTTIGGE 562
            DG+TT+GGE
Sbjct: 645  DGATTVGGE 653


>gb|ACP52002.1| RNA polymerase beta subunit [Pinus leiophylla var. chihuahuana]
            gi|356996525|gb|AET44443.1| RNA polymerase beta subunit
            (chloroplast) [Pinus leiophylla var. chihuahuana]
          Length = 1074

 Score =  249 bits (635), Expect = 4e-64
 Identities = 123/189 (65%), Positives = 149/189 (78%), Gaps = 2/189 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 465  EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQTTPARYRQEFIVIAWEQIHFRSIF 523

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 524  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 583

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQ+ QG  VK+GQ +A
Sbjct: 584  IATQEGRIEYIDAVNITSSVNGDTVRTESVIYQRSNTNTCTHQKPQIRQGECVKKGQILA 643

Query: 536  DGSTTIGGE 562
            DG+TT+GGE
Sbjct: 644  DGATTVGGE 652


>ref|NP_817162.1| RNA polymerase beta subunit [Pinus koraiensis]
            gi|41017711|sp|Q85X54.1|RPOB_PINKO RecName:
            Full=DNA-directed RNA polymerase subunit beta; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta; Short=RNA polymerase subunit beta
            gi|29469681|gb|AAO74009.1| RNA polymerase beta subunit
            [Pinus koraiensis] gi|257042642|gb|ACV32912.1| RNA
            polymerase beta subunit [Pinus monticola]
            gi|257042727|gb|ACV32994.1| RNA polymerase beta subunit
            [Pinus monticola] gi|356997033|gb|AET44944.1| RNA
            polymerase beta subunit (chloroplast) [Pinus amamiana]
            gi|356998338|gb|AET46231.1| RNA polymerase beta subunit
            (chloroplast) [Pinus pumila]
          Length = 1075

 Score =  248 bits (634), Expect = 6e-64
 Identities = 124/189 (65%), Positives = 149/189 (78%), Gaps = 2/189 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 466  EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 524

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 525  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 584

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 585  IATQEGRIEYIDAVNITSSINGDTVRTESVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 644

Query: 536  DGSTTIGGE 562
            DG+TT+GGE
Sbjct: 645  DGATTVGGE 653


>gb|AET49392.1| RNA polymerase beta subunit (chloroplast) [Pinus fenzeliana var.
            dabeshanensis]
          Length = 1075

 Score =  248 bits (634), Expect = 6e-64
 Identities = 124/189 (65%), Positives = 149/189 (78%), Gaps = 2/189 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 466  EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 524

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 525  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 584

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 585  IATQEGRIEYIDAVNITSSINGDTVRTESVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 644

Query: 536  DGSTTIGGE 562
            DG+TT+GGE
Sbjct: 645  DGATTVGGE 653


>gb|AET49321.1| RNA polymerase beta subunit (chloroplast) [Pinus dalatensis]
          Length = 1075

 Score =  248 bits (634), Expect = 6e-64
 Identities = 124/189 (65%), Positives = 149/189 (78%), Gaps = 2/189 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 466  EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 524

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 525  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 584

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 585  IATQEGRIEYIDAVNITSSINGDTVRTESVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 644

Query: 536  DGSTTIGGE 562
            DG+TT+GGE
Sbjct: 645  DGATTVGGE 653


>gb|AET48742.1| RNA polymerase beta subunit (chloroplast) [Pinus edulis]
          Length = 1075

 Score =  248 bits (634), Expect = 6e-64
 Identities = 124/189 (65%), Positives = 149/189 (78%), Gaps = 2/189 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 466  EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 524

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 525  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 584

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQV QG  VK+GQ +A
Sbjct: 585  IATQEGRIEYIDAVNITSSINGDTVRTESVIYQRSNTNTCTHQKPQVRQGECVKKGQILA 644

Query: 536  DGSTTIGGE 562
            DG+TT+GGE
Sbjct: 645  DGATTVGGE 653


>gb|AET47664.1| RNA polymerase beta subunit (chloroplast) [Pinus lawsonii]
            gi|356999864|gb|AET47736.1| RNA polymerase beta subunit
            (chloroplast) [Pinus pringlei]
          Length = 1074

 Score =  248 bits (634), Expect = 6e-64
 Identities = 123/189 (65%), Positives = 149/189 (78%), Gaps = 2/189 (1%)
 Frame = +2

Query: 2    EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
            E+HMV YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI 
Sbjct: 465  EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQXTPARYRQEFIVIAWEQIHFRSIF 523

Query: 176  PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
            P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A
Sbjct: 524  PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 583

Query: 356  TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMA 535
             + QEGRIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQ+ QG  VK+GQ +A
Sbjct: 584  IATQEGRIEYIDAVNITSSVNGDTVRTESVIYQRSNTNTCTHQKPQIRQGECVKKGQILA 643

Query: 536  DGSTTIGGE 562
            DG+TT+GGE
Sbjct: 644  DGATTVGGE 652