BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00023068
         (1513 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_001751645.1| predicted protein [Physcomitrella patens] gi...   276   1e-71
ref|XP_004505045.1| PREDICTED: general transcription factor IIH ...   266   1e-68
ref|XP_003637396.1| General transcription factor IIH subunit [Me...   266   1e-68
ref|XP_006467817.1| PREDICTED: general transcription factor IIH ...   266   2e-68
ref|XP_004232855.1| PREDICTED: general transcription factor IIH ...   266   2e-68
gb|ESW31311.1| hypothetical protein PHAVU_002G227900g [Phaseolus...   265   4e-68
ref|XP_006347058.1| PREDICTED: general transcription factor IIH ...   265   5e-68
ref|XP_003601071.1| General transcription factor IIH subunit [Me...   264   7e-68
ref|XP_006285003.1| hypothetical protein CARUB_v10006310mg [Caps...   264   9e-68
ref|XP_003542754.1| PREDICTED: general transcription factor IIH ...   263   1e-67
emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]   263   1e-67
ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus commun...   263   2e-67
ref|XP_002305144.1| transcription factor-related family protein ...   263   2e-67
ref|XP_006827784.1| hypothetical protein AMTR_s00009p00265760 [A...   259   2e-66
ref|NP_974564.1| transcription factor-related protein [Arabidops...   258   4e-66
ref|NP_193435.2| transcription factor-related protein [Arabidops...   258   4e-66
ref|NP_001190745.1| transcription factor-related protein [Arabid...   258   4e-66
ref|XP_002868091.1| hypothetical protein ARALYDRAFT_493174 [Arab...   258   4e-66
ref|XP_006414285.1| hypothetical protein EUTSA_v10025179mg [Eutr...   258   6e-66
ref|XP_004294031.1| PREDICTED: LOW QUALITY PROTEIN: general tran...   257   8e-66

>ref|XP_001751645.1| predicted protein [Physcomitrella patens] gi|162697626|gb|EDQ83962.1|
            predicted protein [Physcomitrella patens]
          Length = 462

 Score =  276 bits (707), Expect = 1e-71
 Identities = 148/425 (34%), Positives = 252/425 (59%), Gaps = 16/425 (3%)
 Frame = +1

Query: 151  FDNLYVCITLFRFLSPPAKHYVLHLLYIDAKTDPEYVKKWIFPSDLKSHDTLVRSLLEVK 330
            +D  + C  +FR L P AK YVL LL+++     +  ++W  P  L  H   +  L +++
Sbjct: 27   YDRHWTCQAVFRSLPPLAKQYVLRLLWVENAVPLKSWQEWARPEALSKHQIAIDRLEQLR 86

Query: 331  VL--QKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSHL--NLPTAEDLEKYTWN 498
            V+  +++    +    +N K Q Q+R+A+  G  PP + +S  +   +P + DLE Y   
Sbjct: 87   VILPERSDLSNSTHYLMNPKLQKQLRQALSTGGGPPRDVVSESVAARVPNSADLENYAMK 146

Query: 499  KWQDVLQVLVN----PDTSTKETLVFKIFSETKLLSSAGSSLDITASGLNFLLMDMECQM 666
            +W+ VL  LV+         K   + K+F  + LL+    S  +T  G  FLLMD   Q+
Sbjct: 147  QWESVLLQLVDCAADGPAGPKNPFIIKVFQRSGLLTPENESPSLTDLGFQFLLMDTNSQL 206

Query: 667  WFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTLSSFGLVK 840
            W ++REY+  +++      +L+ FL+ELGF++VG+ YS+  L  + ++V+  L++ GLVK
Sbjct: 207  WQLVREYVTSSEDRGTDSGELVGFLLELGFHLVGEAYSVNSLSPALQKVLDELAALGLVK 266

Query: 841  FQ--INENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQKCILNLF 1014
             Q  + E+++IPT+L+S L++ +S   +    +G++VVE N KVYAYT S +Q  IL  F
Sbjct: 267  LQQGMKESWYIPTKLASNLSASLSESTDWQSSEGFVVVETNFKVYAYTSSKLQTEILRCF 326

Query: 1015 IRIEYELPNMIVGTLTREKMYEAFDLGINSKQVVQFFSKHSN----KTTDKVPYSVATQI 1182
             R+EY+LPN++V TLT+E + +A   GI+++Q++ F  KH++    +    VP +V+ Q+
Sbjct: 327  TRLEYQLPNLVVATLTKESVNKALGSGISAEQIISFLRKHAHPHVAQKIPVVPETVSDQL 386

Query: 1183 KLWEADKQRVKFDDAYLYDDFPTEDLYTNTLKHSMKIGAFLWKHQGRKQVIVDSEKDGEM 1362
            +LWE D+ RV+F+ AY YDDFPT  +Y   + H+  +G  L++    K++IV S+   +M
Sbjct: 387  RLWETDRNRVQFEPAYFYDDFPTMAIYEAVVAHARDLGGLLFEDASAKRLIVRSDLHEDM 446

Query: 1363 RKYMK 1377
            R+Y++
Sbjct: 447  RQYIR 451


>ref|XP_004505045.1| PREDICTED: general transcription factor IIH subunit 4-like [Cicer
            arietinum]
          Length = 451

 Score =  266 bits (681), Expect = 1e-68
 Identities = 145/440 (32%), Positives = 252/440 (57%), Gaps = 15/440 (3%)
 Frame = +1

Query: 103  FRDKLKGWVSRNHNTYFDNLYVCITLFRFLSPPAKHYVLHLLYIDAKTDPEYVKKWIFPS 282
            F D +    +   +  + N ++C  + R L P AK YVL LL+ID     + +++W+ P 
Sbjct: 11   FMDMVASMPAIKLDKLYQNGFICEAILRSLPPLAKKYVLQLLHIDGPVSAKLLEEWVLPD 70

Query: 283  DLKSHDTLVRSLLEVKVLQKTYEGEAVRN-KLNQKFQNQMRKAIEKGFKPPNNFMSSHLN 459
             L  H   +  L++++V  +  + +  +  K+N  +Q  ++K +  G   P   M S++ 
Sbjct: 71   GLSKHKVAIDRLVQLRVFVEALDRKNEKTYKVNSTYQRSLQKLLVHGGTLPRESMPSNIT 130

Query: 460  --LPTAEDLEKYTWNKWQDVLQVLVNPDTSTK----ETLVFKIFSETKLLSSAGSSLDIT 621
              LPT EDLE Y   +W+  L  L++P    K     + + K+F    L      +  +T
Sbjct: 131  VRLPTLEDLETYALEQWECFLLQLISPSHVEKTLNISSSLMKVFQRRLLSQRDKEAPKLT 190

Query: 622  ASGLNFLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVS 795
             SG  FLLMD   Q+W+++REYI  ++E      DLISF++EL F+++G+ Y+I  L   
Sbjct: 191  ESGFQFLLMDTNAQLWYIIREYISNSEERGVDAGDLISFMLELSFHVIGEAYNINTLTDF 250

Query: 796  RKEVVKTLSSFGLVKFQIN--ENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVY 969
            ++ ++K L+  GLVK Q    E++FIPT+L++ L+  +SL  ++ + +G++VVE N +VY
Sbjct: 251  QRNIIKDLADLGLVKLQQGRKESWFIPTKLATNLS--VSLTESSSRKEGFVVVETNFRVY 308

Query: 970  AYTPSPVQKCILNLFIRIEYELPNMIVGTLTREKMYEAFDLGINSKQVVQFFSKHSN--- 1140
            AY+ S +   IL LF R+EY+LPN+IVG +T+E +Y A + GI ++Q+V F  ++++   
Sbjct: 309  AYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNALENGITAEQIVSFLRQNAHPRV 368

Query: 1141 -KTTDKVPYSVATQIKLWEADKQRVKFDDAYLYDDFPTEDLYTNTLKHSMKIGAFLWKHQ 1317
             +    VP +V  QI+LWE+D  RV+  +AY YD+FP+ D++      + +    LW++ 
Sbjct: 369  AQRIPAVPENVTDQIRLWESDLNRVEMTEAYYYDEFPSRDVFEGACDCAREWNGLLWENS 428

Query: 1318 GRKQVIVDSEKDGEMRKYMK 1377
             +  ++V SE    +R +++
Sbjct: 429  KKMHLVVKSEVHSYVRDFLR 448


>ref|XP_003637396.1| General transcription factor IIH subunit [Medicago truncatula]
            gi|355503331|gb|AES84534.1| General transcription factor
            IIH subunit [Medicago truncatula]
          Length = 451

 Score =  266 bits (681), Expect = 1e-68
 Identities = 146/440 (33%), Positives = 250/440 (56%), Gaps = 15/440 (3%)
 Frame = +1

Query: 103  FRDKLKGWVSRNHNTYFDNLYVCITLFRFLSPPAKHYVLHLLYIDAKTDPEYVKKWIFPS 282
            F D +    +   +  ++N ++C  + R L P AK YVL L +ID     + + +W+ P 
Sbjct: 11   FMDMVASMPTIKLDKLYENGFICEAILRSLPPLAKKYVLQLFHIDGPVPAKLLAEWVLPD 70

Query: 283  DLKSHDTLVRSLLEVKVLQKTYEGEAVRN-KLNQKFQNQMRKAIEKGFKPPNNFMSSHLN 459
             L  H   +  L+++ V  +  + +  +  K+N  +Q  ++K +  G   P   M S++ 
Sbjct: 71   GLSKHKVAIDRLVQLGVFVEALDSKNGKTYKVNPTYQRSLQKLLVHGGTLPRESMPSNIT 130

Query: 460  --LPTAEDLEKYTWNKWQDVLQVLVNPDTSTK----ETLVFKIFSETKLLSSAGSSLDIT 621
              LPT EDLE Y   +W+  L  L++P    K     + + K+F    L      +  +T
Sbjct: 131  VRLPTLEDLETYALEQWECFLLQLISPSHVDKTLNISSSLMKVFQRRLLSQRDREAPKLT 190

Query: 622  ASGLNFLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVS 795
             SG  FLLMD   Q+W+++REYI  ++E      DLISF++EL F+++G+ Y+I  L   
Sbjct: 191  ESGFQFLLMDTNAQLWYIIREYITNSEERGVDAGDLISFMLELSFHVIGEAYNINTLTEF 250

Query: 796  RKEVVKTLSSFGLVKFQIN--ENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVY 969
            ++ ++K L+  GLVK Q    E++FIPT+L++ L+  +S+  ++ + +G++VVE N +VY
Sbjct: 251  QRNIIKDLADLGLVKLQQGRKESWFIPTKLATNLS--VSMTESSSRKEGFVVVETNFRVY 308

Query: 970  AYTPSPVQKCILNLFIRIEYELPNMIVGTLTREKMYEAFDLGINSKQVVQFFSKHSN--- 1140
            AY+ S +   IL LF R+EY+LPN+IVG +T+E +Y AFD GI + Q+V FF ++++   
Sbjct: 309  AYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFDNGITADQIVSFFRQNAHPRV 368

Query: 1141 -KTTDKVPYSVATQIKLWEADKQRVKFDDAYLYDDFPTEDLYTNTLKHSMKIGAFLWKHQ 1317
             +    VP +V  QI+LWE+D  RV+  +AY YD+FP+ D++      + +    LW+  
Sbjct: 369  AQRIPAVPENVTDQIRLWESDLNRVEMTEAYYYDEFPSRDVFEGACDCAREWSGLLWEDS 428

Query: 1318 GRKQVIVDSEKDGEMRKYMK 1377
             +  ++V SE    +R +++
Sbjct: 429  KKMHLVVKSEVHTYVRDFLR 448


>ref|XP_006467817.1| PREDICTED: general transcription factor IIH subunit 4-like [Citrus
            sinensis]
          Length = 450

 Score =  266 bits (680), Expect = 2e-68
 Identities = 146/439 (33%), Positives = 254/439 (57%), Gaps = 14/439 (3%)
 Frame = +1

Query: 103  FRDKLKGWVSRNHNTYFDNLYVCITLFRFLSPPAKHYVLHLLYIDAKTDPEYVKKWIFPS 282
            F D +    +R+ +  ++N ++C  + R L P AK YV+ + YID     + +++W+ P 
Sbjct: 11   FMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPD 70

Query: 283  DLKSHDTLVRSLLEVKVLQKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSHLN- 459
                H   +  L+++++  +  + E    +LN  FQ+ +RK +  G   P   M S +  
Sbjct: 71   GFTKHRVAIDRLVQLRLFSEEKKKETTY-RLNSTFQSNLRKHLIYGGALPREPMPSGITA 129

Query: 460  -LPTAEDLEKYTWNKWQDVLQVLVNPDTSTKET----LVFKIFSETKLLSSAGSSLDITA 624
             LPT EDLE Y   +W+  L  L++   + + T     + K+F    L      +  +T 
Sbjct: 130  RLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTE 189

Query: 625  SGLNFLLMDMECQMWFVLREYIYKTQEA--KRVDLISFLIELGFYIVGKPYSILDLPVSR 798
            SG  FLLMD   Q+W+++REYI  +QE    + DLISFL+EL F++ G+ Y++  L   +
Sbjct: 190  SGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQ 249

Query: 799  KEVVKTLSSFGLVKFQIN--ENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYA 972
            K ++K  +  GLVK Q    EN+FIPT+L++ L+  MSL  ++ + +G+IVVE N ++YA
Sbjct: 250  KSMIKDFADLGLVKLQQGRKENWFIPTKLATNLS--MSLTDSSARKEGFIVVETNFRMYA 307

Query: 973  YTPSPVQKCILNLFIRIEYELPNMIVGTLTREKMYEAFDLGINSKQVVQFFSKHSN-KTT 1149
            Y+ S +   IL LF ++EY+LPN+IVG +T+E +Y AF+ GI ++Q++ F  ++++ +  
Sbjct: 308  YSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA 367

Query: 1150 DK---VPYSVATQIKLWEADKQRVKFDDAYLYDDFPTEDLYTNTLKHSMKIGAFLWKHQG 1320
            D+   VP +V  QI+LWE+D  RV+   A+ YD+FP+ D++     ++      LW+   
Sbjct: 368  DRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPK 427

Query: 1321 RKQVIVDSEKDGEMRKYMK 1377
            + +++V +E    MR++++
Sbjct: 428  KMRLVVKAEIHMHMREFLR 446


>ref|XP_004232855.1| PREDICTED: general transcription factor IIH subunit 4-like [Solanum
            lycopersicum]
          Length = 453

 Score =  266 bits (679), Expect = 2e-68
 Identities = 149/426 (34%), Positives = 250/426 (58%), Gaps = 17/426 (3%)
 Frame = +1

Query: 151  FDNLYVCITLFRFLSPPAKHYVLHLLYIDAKTDPEYVKKWIFPSDLKSHDTLVRSLLEVK 330
            +DN ++C  + R L P AK YVL +LYID     + +++W+ P     H   +  L++++
Sbjct: 27   YDNSFICEAILRSLPPLAKKYVLQMLYIDIPITAKSMEEWVLPDGFSKHKVAIDRLIQLR 86

Query: 331  VLQKTYEGEA-VRNKLNQKFQNQMRKAIEKGFKPPNNFMSSHLN--LPTAEDLEKYTWNK 501
            V+ +T++ +     +LN KFQ  ++K I  G   P   M S++   LP+ E+LE Y   +
Sbjct: 87   VMTETFDRKKEAMYQLNPKFQFNLQKHIVYGGVLPREPMPSNITVRLPSLEELEAYAVEQ 146

Query: 502  WQDVLQVLVNPDTSTKETLV----FKIFSETKLLSSAGSSLD--ITASGLNFLLMDMECQ 663
            W+  L  L++   + K T +     KIF +  LLS         +T SG  FLLMD   Q
Sbjct: 147  WECFLLNLISSSEAGKTTNISSSMMKIF-QRGLLSQRDDREPPRLTESGFQFLLMDTNAQ 205

Query: 664  MWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTLSSFGLV 837
            +W+++REYI   +E      DLI+FL+EL F++ GK Y+   +   ++ ++K LS  GLV
Sbjct: 206  LWYIIREYITNAEERGVDSADLIAFLLELSFHVTGKAYNTNTITDLQRSIIKDLSDLGLV 265

Query: 838  KFQIN--ENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQKCILNL 1011
            K Q    E++FIPT+L++ L+  +SL     + QG+IV+E N ++YAY+ S +   IL L
Sbjct: 266  KLQQGRKESWFIPTKLATNLS--ISLADTTTRKQGFIVIETNFRLYAYSTSKLHCEILRL 323

Query: 1012 FIRIEYELPNMIVGTLTREKMYEAFDLGINSKQVVQFFSKHSN----KTTDKVPYSVATQ 1179
            F R+EY+LPN+IVG + +E +Y+AF  GI S+Q+V F  ++++    +    VP +V  Q
Sbjct: 324  FARVEYQLPNLIVGAINKESLYKAFQNGITSEQIVSFLQQNAHPRVAERIPSVPENVTDQ 383

Query: 1180 IKLWEADKQRVKFDDAYLYDDFPTEDLYTNTLKHSMKIGAFLWKHQGRKQVIVDSEKDGE 1359
            I+LWE+D  RV+   A+ YD+FP++D++      + + G  LW+   R +++V ++   E
Sbjct: 384  IRLWESDLNRVEMTPAHFYDEFPSKDVFEAACDFAREYGGLLWEDSKRMRLVVKADILAE 443

Query: 1360 MRKYMK 1377
            M+++++
Sbjct: 444  MKEFLR 449


>gb|ESW31311.1| hypothetical protein PHAVU_002G227900g [Phaseolus vulgaris]
          Length = 451

 Score =  265 bits (677), Expect = 4e-68
 Identities = 145/440 (32%), Positives = 251/440 (57%), Gaps = 15/440 (3%)
 Frame = +1

Query: 103  FRDKLKGWVSRNHNTYFDNLYVCITLFRFLSPPAKHYVLHLLYIDAKTDPEYVKKWIFPS 282
            F D +    +   +  ++N ++C  + R L P AK YV+ +L ID     + +++W+ P 
Sbjct: 11   FMDMVASMPAMKLDKLYENGFICEAILRSLPPLAKKYVIQMLQIDVPVAAKLLEEWVLPD 70

Query: 283  DLKSHDTLVRSLLEVKVLQKTYEGEAVRN-KLNQKFQNQMRKAIEKGFKPPNNFMSSHLN 459
             +  H   V  L++++V  +  + +  +  K+N  +Q  ++K + +G   P   M S++ 
Sbjct: 71   GVSKHRVAVDRLVQLRVFLEAVDRKNEKTYKVNPTYQRSLQKLLVQGGTLPRESMPSNIT 130

Query: 460  --LPTAEDLEKYTWNKWQDVLQVLVNPDTSTK----ETLVFKIFSETKLLSSAGSSLDIT 621
              LPT E+LE Y   +W+  L  L++P  + K     + + K+F    L      +  +T
Sbjct: 131  VRLPTLENLEAYALEQWEWFLLQLISPAQADKPLNISSSLMKVFQRRLLSQRDKEAPKLT 190

Query: 622  ASGLNFLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVS 795
             SG  FLLMD   Q+W+++REYI  ++E      DLISF++EL F+++G+ YSI  L   
Sbjct: 191  ESGFQFLLMDTNAQLWYIIREYISNSEERGVDAADLISFMLELSFHVIGEAYSISTLTDF 250

Query: 796  RKEVVKTLSSFGLVKFQINE--NYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVY 969
            ++ ++  L+  GLVK Q     ++FIPT+L++ L+  MSL  ++ + QG++VVE N +VY
Sbjct: 251  QRSIINDLADLGLVKLQQGRKGSWFIPTKLATNLS--MSLADSSSRKQGFVVVETNFRVY 308

Query: 970  AYTPSPVQKCILNLFIRIEYELPNMIVGTLTREKMYEAFDLGINSKQVVQFFSKHSNKTT 1149
            AY+ S +   IL LF R+EY+LPN+IVG +T+E +Y AF+ GI + Q+V F  ++++   
Sbjct: 309  AYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFENGITADQIVTFIQQNAHPRV 368

Query: 1150 DK----VPYSVATQIKLWEADKQRVKFDDAYLYDDFPTEDLYTNTLKHSMKIGAFLWKHQ 1317
             +    VP +V  QI+LWEAD  RV+  DAY YD+FP+ D++      + +    LW+  
Sbjct: 369  AERIPCVPENVTDQIRLWEADLNRVEMTDAYYYDEFPSRDVFEGACDCAREWNGLLWEDS 428

Query: 1318 GRKQVIVDSEKDGEMRKYMK 1377
             +  ++V +E    +R +++
Sbjct: 429  KKMHMVVKTEVHPYVRDFLR 448


>ref|XP_006347058.1| PREDICTED: general transcription factor IIH subunit 4-like [Solanum
            tuberosum]
          Length = 453

 Score =  265 bits (676), Expect = 5e-68
 Identities = 149/426 (34%), Positives = 249/426 (58%), Gaps = 17/426 (3%)
 Frame = +1

Query: 151  FDNLYVCITLFRFLSPPAKHYVLHLLYIDAKTDPEYVKKWIFPSDLKSHDTLVRSLLEVK 330
            +DN ++C  + R L P AK YVL +LYID     + +++W+ P     H   +  L++++
Sbjct: 27   YDNSFICEAILRSLPPLAKKYVLQMLYIDIPITAKSMEEWVLPDGFSKHKVAIDRLIQLR 86

Query: 331  VLQKTYEGEAVRN-KLNQKFQNQMRKAIEKGFKPPNNFMSSHLN--LPTAEDLEKYTWNK 501
            V+ +T++ +     +LN KFQ  ++K I  G   P   M S++   LP+ E+LE Y   +
Sbjct: 87   VMTETFDRKKEATYQLNPKFQFNLQKHIVHGGILPREPMPSNITVRLPSLEELEAYAVEQ 146

Query: 502  WQDVLQVLVNPDTSTKETLV----FKIFSETKLLSSAGSSLD--ITASGLNFLLMDMECQ 663
            W+  L  L++     K T +     KIF +  LLS         +T SG  FLLMD   Q
Sbjct: 147  WECFLLNLISSSEGGKTTNISSSMMKIF-QRGLLSQRDDREPPRLTESGFQFLLMDTNAQ 205

Query: 664  MWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTLSSFGLV 837
            +W+++REYI   +E      DLI+FL+EL F++ GK Y+   +   ++ ++K LS  GLV
Sbjct: 206  LWYIIREYITNAEERGVDSADLIAFLLELSFHVTGKAYNTNTITDLQRSIIKDLSDLGLV 265

Query: 838  KFQIN--ENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQKCILNL 1011
            K Q    E++FIPT+L++ L+  +SL     + QG+IV+E N ++YAY+ S +   IL L
Sbjct: 266  KLQQGRKESWFIPTKLATNLS--ISLADTTSRKQGFIVIETNFRLYAYSTSKLHCEILRL 323

Query: 1012 FIRIEYELPNMIVGTLTREKMYEAFDLGINSKQVVQFFSKHSN----KTTDKVPYSVATQ 1179
            F R+EY+LPN+IVG + +E +Y+AF  GI S Q+V F  ++++    +    VP +V  Q
Sbjct: 324  FARVEYQLPNLIVGAINKESLYKAFQNGITSDQIVSFLQQNAHPRVAERIPSVPENVTDQ 383

Query: 1180 IKLWEADKQRVKFDDAYLYDDFPTEDLYTNTLKHSMKIGAFLWKHQGRKQVIVDSEKDGE 1359
            I+LWE+D  RV+ + A+ YD+FP++D++      + + G  LW+   R +++V ++   E
Sbjct: 384  IRLWESDLNRVEMEPAHFYDEFPSKDVFEAACDFAREYGGLLWEDSKRMRLVVKADILTE 443

Query: 1360 MRKYMK 1377
            M+++++
Sbjct: 444  MKEFLR 449


>ref|XP_003601071.1| General transcription factor IIH subunit [Medicago truncatula]
            gi|355490119|gb|AES71322.1| General transcription factor
            IIH subunit [Medicago truncatula]
          Length = 452

 Score =  264 bits (675), Expect = 7e-68
 Identities = 144/441 (32%), Positives = 248/441 (56%), Gaps = 16/441 (3%)
 Frame = +1

Query: 103  FRDKLKGWVSRNHNTYFDNLYVCITLFRFLSPPAKHYVLHLLYIDAKTDPEYVKKWIFPS 282
            F D +    +   +  + N ++C  + R L P AK YVL LL+ID     + + +W+ P 
Sbjct: 11   FMDMVASMPAIKLDKLYQNGFICEAILRSLPPLAKKYVLQLLHIDGPVPAKLLAEWVLPD 70

Query: 283  DLKSHDTLVRSLLEVKVLQKTYEGEAVRN--KLNQKFQNQMRKAIEKGFKPPNNFMSSHL 456
             L  H   +  L++++V  + ++        ++N  +Q  ++  +  G   P   M S++
Sbjct: 71   GLSKHKVAIDRLVQLRVFVEAFDNRKNEKTYQVNSTYQKSLQNLLVHGGTLPRESMPSNI 130

Query: 457  N--LPTAEDLEKYTWNKWQDVLQVLVNPDTSTK----ETLVFKIFSETKLLSSAGSSLDI 618
               LPT EDLE Y   +W+  L  L++P    K     + + K+F    L      +  +
Sbjct: 131  TVRLPTLEDLETYALEQWECFLLQLISPSHVDKTLNISSSLMKVFQRRLLSQRDREAPKL 190

Query: 619  TASGLNFLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPV 792
            T SG  FLLMD   Q+W+++REYI  ++E      DLISF++EL F+++G+ Y+I  L  
Sbjct: 191  TESGFQFLLMDTNAQLWYIIREYITNSEERGVDAGDLISFMLELSFHVIGEAYNINTLTE 250

Query: 793  SRKEVVKTLSSFGLVKFQIN--ENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKV 966
             ++ ++K L+  GLVK Q    E++FIPT+L++ L+  +S+  ++ + +G++VVE N +V
Sbjct: 251  FQRNIIKDLADLGLVKLQQGRKESWFIPTKLATNLS--VSMTESSSRKEGFVVVETNFRV 308

Query: 967  YAYTPSPVQKCILNLFIRIEYELPNMIVGTLTREKMYEAFDLGINSKQVVQFFSKHSN-- 1140
            YAY+ S +   IL LF R+EY+LPN+IVG +T+E +Y AFD GI + Q+V F  ++++  
Sbjct: 309  YAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFDNGITADQIVSFLRQNAHPR 368

Query: 1141 --KTTDKVPYSVATQIKLWEADKQRVKFDDAYLYDDFPTEDLYTNTLKHSMKIGAFLWKH 1314
              +    VP +V  QI+LWE+D  RV+  +AY YD+FP+ D++      + +    LW+ 
Sbjct: 369  VAQRVPAVPENVTDQIRLWESDLNRVEMTEAYYYDEFPSRDVFEGACDCAREWSGLLWED 428

Query: 1315 QGRKQVIVDSEKDGEMRKYMK 1377
              +  ++V SE    +R +++
Sbjct: 429  SKKMHLVVKSEVHTYVRDFLR 449


>ref|XP_006285003.1| hypothetical protein CARUB_v10006310mg [Capsella rubella]
            gi|482553708|gb|EOA17901.1| hypothetical protein
            CARUB_v10006310mg [Capsella rubella]
          Length = 452

 Score =  264 bits (674), Expect = 9e-68
 Identities = 147/423 (34%), Positives = 241/423 (56%), Gaps = 15/423 (3%)
 Frame = +1

Query: 151  FDNLYVCITLFRFLSPPAKHYVLHLLYIDAKTDPEYVKKWIFPSDLKSHDTLVRSLLEVK 330
            ++N+++C  + R L P AK YVL +LYID       +++W+       H   +  L++++
Sbjct: 27   YNNVFICEAILRSLPPLAKKYVLQMLYIDVAVPATVLEEWVLADGASKHRVAIDRLIQLR 86

Query: 331  VLQK-TYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSH--LNLPTAEDLEKYTWNK 501
            +  + T         LN  FQN ++K I  G   P   M+S   + LP+ ++LE Y   +
Sbjct: 87   IFSEITDRKRGTSYSLNPTFQNNLQKHIISGGVLPREPMNSDNSIKLPSLQELETYALKQ 146

Query: 502  WQDVLQVLVNPDTSTK----ETLVFKIFSETKLLSSAGSSLDITASGLNFLLMDMECQMW 669
            W+  L  L+N     K       + KIF    L         +T SG  FLLMD   Q+W
Sbjct: 147  WERFLLQLINSGQGDKLNGISESMMKIFQRGLLSQRDKDGPRLTESGFQFLLMDTNAQLW 206

Query: 670  FVLREYIYKTQEAK--RVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTLSSFGLVKF 843
            +++REYI   +E K    DLISFL+EL F++ G+ Y+   L   +K  +K L   GLVK 
Sbjct: 207  YIIREYISNAEERKVDPADLISFLLELSFHVTGEAYNSNTLTELQKNTLKDLEDLGLVKL 266

Query: 844  Q--INENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQKCILNLFI 1017
            Q  +  N+FIPT+L++ L+  +SL  ++ + +G++V+E N ++YAY+ S +Q  IL LF 
Sbjct: 267  QQGMKGNWFIPTKLATNLS--VSLSDSSARKEGFVVMETNFRMYAYSTSKLQCEILRLFA 324

Query: 1018 RIEYELPNMIVGTLTREKMYEAFDLGINSKQVVQFFSKHSN-KTTDKV---PYSVATQIK 1185
            RIEY+LPN+I   +T+E +Y AFD GI S Q++ F  ++S+ +  D+V   P +V  QI+
Sbjct: 325  RIEYQLPNLIACAITKESLYNAFDNGITSDQIITFLQQNSHPRCADRVPAIPENVTDQIR 384

Query: 1186 LWEADKQRVKFDDAYLYDDFPTEDLYTNTLKHSMKIGAFLWKHQGRKQVIVDSEKDGEMR 1365
            LWE+D +R++   A+ YD+FP++D++      + + G  LW+   R +++V SE   +MR
Sbjct: 385  LWESDLKRIEMTQAHFYDEFPSKDVFEAACDFAREWGGLLWEDSKRMRLVVKSEVHNQMR 444

Query: 1366 KYM 1374
            +++
Sbjct: 445  EFL 447


>ref|XP_003542754.1| PREDICTED: general transcription factor IIH subunit 4-like isoform X1
            [Glycine max]
          Length = 451

 Score =  263 bits (673), Expect = 1e-67
 Identities = 143/440 (32%), Positives = 251/440 (57%), Gaps = 15/440 (3%)
 Frame = +1

Query: 103  FRDKLKGWVSRNHNTYFDNLYVCITLFRFLSPPAKHYVLHLLYIDAKTDPEYVKKWIFPS 282
            F D +    +   +  ++N ++C  + R L P AK YV+ +L+ID     + +++W+ P 
Sbjct: 11   FMDMVASMPAMKLDKLYENGFICEAILRSLLPLAKKYVIQMLHIDVSVAAKLLEEWVLPG 70

Query: 283  DLKSHDTLVRSLLEVKVLQKTYEGEAVRN-KLNQKFQNQMRKAIEKGFKPPNNFMSSHLN 459
             +  H   +  L++++V  +  + +  +  K+N  FQ  ++K + +G   P   M S++ 
Sbjct: 71   GVSKHRVAIDRLVQLRVFLEAVDRKNEKTYKVNPTFQRSLQKLLVQGGTLPRESMPSNIT 130

Query: 460  --LPTAEDLEKYTWNKWQDVLQVLVNPDTSTK----ETLVFKIFSETKLLSSAGSSLDIT 621
              LPT E+LE Y   +W+  L  L++P    K     + + K+F    L      +  +T
Sbjct: 131  VRLPTLENLEAYALEQWECFLLQLISPSQVEKPLNISSSLMKVFQRRILSYRDKEAPKLT 190

Query: 622  ASGLNFLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVS 795
             SG  FLLMD   Q+W+++REYI  +++      DLISF++EL F+ +G+ YS+  L   
Sbjct: 191  ESGFQFLLMDTNAQLWYIIREYISNSEDRGVDAADLISFMLELSFHDIGEAYSVDTLTSF 250

Query: 796  RKEVVKTLSSFGLVKFQINE--NYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVY 969
            ++ ++  L+  GLVK Q     ++FIPT+L++ L+  MSL  ++ + QG++VVE N +VY
Sbjct: 251  QRTIINDLADLGLVKIQQGRKGSWFIPTKLATNLS--MSLADSSSRKQGFVVVETNFRVY 308

Query: 970  AYTPSPVQKCILNLFIRIEYELPNMIVGTLTREKMYEAFDLGINSKQVVQFFSKHSN--- 1140
            AY+ S +   IL LF R+EY+LPN+IVG +T+E +Y AF+ GI ++Q++ F  ++++   
Sbjct: 309  AYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYSAFENGITAEQIITFLQQNAHPRV 368

Query: 1141 -KTTDKVPYSVATQIKLWEADKQRVKFDDAYLYDDFPTEDLYTNTLKHSMKIGAFLWKHQ 1317
             +    VP +V  QI+LWEAD  RV+  DAY YD+FP+ D++      + +    LW+  
Sbjct: 369  AERIPSVPENVTEQIRLWEADLNRVEMTDAYYYDEFPSRDVFEGACDCAREWNGLLWEDS 428

Query: 1318 GRKQVIVDSEKDGEMRKYMK 1377
             +  ++V +E    +R Y++
Sbjct: 429  KKMHMVVKTEVHQYVRDYLR 448


>emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]
          Length = 451

 Score =  263 bits (672), Expect = 1e-67
 Identities = 146/440 (33%), Positives = 250/440 (56%), Gaps = 15/440 (3%)
 Frame = +1

Query: 103  FRDKLKGWVSRNHNTYFDNLYVCITLFRFLSPPAKHYVLHLLYIDAKTDPEYVKKWIFPS 282
            F D +    +   +  + N ++C  + R L P AK Y+L +LYID     + +++W+   
Sbjct: 11   FMDMVASLPAMKLDALYHNTFICEAILRSLPPLAKKYILQMLYIDVPVTAKAMEEWVLAD 70

Query: 283  DLKSHDTLVRSLLEVKVLQKTYEGEAVRN-KLNQKFQNQMRKAIEKGFKPPNNFMSSHLN 459
                H   +  L++++V  +T + +   + +LN  FQ  ++K +  G   P   M S++ 
Sbjct: 71   GFSKHRVAIDRLIQLRVFTETSDRKKETSYRLNPTFQTNLQKHLIYGGVLPREPMPSNIT 130

Query: 460  --LPTAEDLEKYTWNKWQDVLQVLVNPDTSTKET----LVFKIFSETKLLSSAGSSLDIT 621
              LP+ +DLE Y   +W+  L  L++   + K T     + K+F    L      +  +T
Sbjct: 131  VRLPSLDDLEAYALGQWECFLLQLISSTQTEKLTNFSSSLMKVFQRGLLTQREKEAPRLT 190

Query: 622  ASGLNFLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVS 795
             SG  FLLMD   Q+W+++REYI  ++E      DLISFL+EL F++ G+ Y+I  L   
Sbjct: 191  ESGFQFLLMDTNAQLWYIMREYISNSEERGVDPADLISFLLELSFHVTGEAYNINTLTEF 250

Query: 796  RKEVVKTLSSFGLVKFQIN--ENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVY 969
            ++  +K L   GLVK Q    E++FIPT+L++ L+  MSL   + + QG++VVE N ++Y
Sbjct: 251  QRNTIKDLVDLGLVKLQQGRKESWFIPTKLATNLS--MSLSDTSSRKQGFVVVETNFRLY 308

Query: 970  AYTPSPVQKCILNLFIRIEYELPNMIVGTLTREKMYEAFDLGINSKQVVQFFSKHSN--- 1140
            AY+ S +   IL LF R+EY+LPN+IVG +T+E +Y AF+ GI ++Q++ F  ++++   
Sbjct: 309  AYSSSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV 368

Query: 1141 -KTTDKVPYSVATQIKLWEADKQRVKFDDAYLYDDFPTEDLYTNTLKHSMKIGAFLWKHQ 1317
             + T  VP +V  QI+LWE D  RV+   ++LYD+FP+ D++      + + G  LW+  
Sbjct: 369  AERTPAVPENVTDQIRLWETDLNRVETMPSHLYDEFPSRDVFEAACDFAREYGGLLWEDS 428

Query: 1318 GRKQVIVDSEKDGEMRKYMK 1377
             + +++V +E    MR+Y++
Sbjct: 429  KKMRLVVKAEIHLHMREYLR 448


>ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus communis]
            gi|223541708|gb|EEF43256.1| tfiih, polypeptide, putative
            [Ricinus communis]
          Length = 451

 Score =  263 bits (671), Expect = 2e-67
 Identities = 144/440 (32%), Positives = 252/440 (57%), Gaps = 15/440 (3%)
 Frame = +1

Query: 103  FRDKLKGWVSRNHNTYFDNLYVCITLFRFLSPPAKHYVLHLLYIDAKTDPEYVKKWIFPS 282
            F D +    +   +  + N ++C  + R L P AK YV+ +LYID     + +++W+ P 
Sbjct: 11   FMDMVASLPAMKLDKLYTNPFICQAILRSLPPLAKKYVVQILYIDGPVADKTLEEWLLPD 70

Query: 283  DLKSHDTLVRSLLEVKVLQKTYEGEA-VRNKLNQKFQNQMRKAIEKGFKPPNNFMSSHL- 456
                H   +  L ++++  +  + +  +  KLN  FQ  ++K +  G   P   ++S++ 
Sbjct: 71   GSSKHRVAIDRLTQLRIFTEIVDRKKEISYKLNPTFQTNLQKHLIDGGVLPGEPLASNIA 130

Query: 457  -NLPTAEDLEKYTWNKWQDVLQVLVNPDTSTKET----LVFKIFSETKLLSSAGSSLDIT 621
              LPT E+L+ Y   +W+  L  L+N   + + T     + KIF    L      +  +T
Sbjct: 131  VRLPTLEELDTYALGQWECFLLHLINSGHAERSTNFSSSMMKIFQRGLLTQRDKEAPRLT 190

Query: 622  ASGLNFLLMDMECQMWFVLREYIYKTQEA--KRVDLISFLIELGFYIVGKPYSILDLPVS 795
             SG  FLLMD   Q+W+++REYI  ++E      DLISFL+EL F+I G+ Y+++ L   
Sbjct: 191  ESGFQFLLMDTNAQLWYIIREYISNSEERGLDSADLISFLLELSFHITGEAYNMIMLTEF 250

Query: 796  RKEVVKTLSSFGLVKFQIN--ENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVY 969
            ++ ++K L+  GLVK Q    E++FIPT+L++ L+  MSL  ++ + QG++VVE N ++Y
Sbjct: 251  QRNMIKDLADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSSRKQGFVVVETNFRMY 308

Query: 970  AYTPSPVQKCILNLFIRIEYELPNMIVGTLTREKMYEAFDLGINSKQVVQFFSKHSN--- 1140
            AY+ S +   I+ LF R+EY+LPN++VG +T+E +Y AF+ GI ++Q++ F  ++++   
Sbjct: 309  AYSTSKLHCEIMRLFSRVEYQLPNLVVGAMTKESLYSAFENGITAEQIISFLQQNAHPRV 368

Query: 1141 -KTTDKVPYSVATQIKLWEADKQRVKFDDAYLYDDFPTEDLYTNTLKHSMKIGAFLWKHQ 1317
             +    VP +V  QI+LWE+D  RV+   A+LYD+FP+ D++      +      LW+  
Sbjct: 369  AERIPSVPENVTDQIRLWESDMNRVEMTPAHLYDEFPSRDVFEAACNFARDWNGLLWEDS 428

Query: 1318 GRKQVIVDSEKDGEMRKYMK 1377
             R +++V +E    MR+Y++
Sbjct: 429  KRMRMVVKAEIHLNMREYLR 448


>ref|XP_002305144.1| transcription factor-related family protein [Populus trichocarpa]
            gi|222848108|gb|EEE85655.1| transcription factor-related
            family protein [Populus trichocarpa]
          Length = 449

 Score =  263 bits (671), Expect = 2e-67
 Identities = 142/438 (32%), Positives = 250/438 (57%), Gaps = 13/438 (2%)
 Frame = +1

Query: 103  FRDKLKGWVSRNHNTYFDNLYVCITLFRFLSPPAKHYVLHLLYIDAKTDPEYVKKWIFPS 282
            F D +    +   +T + N ++C  + R L P AK YV+ +L+ D     + +++W+   
Sbjct: 11   FMDMVASLPAMKLDTLYQNAFICEAILRSLPPLAKKYVVQILFFDGPVSGKLLEQWVLAD 70

Query: 283  DLKSHDTLVRSLLEVKVLQKTYEGEAVRN-KLNQKFQNQMRKAIEKGFKPPNNFMSSHLN 459
             +  H   +  L+++++  +  + +   + KLNQ FQ  +RK +  G   P   M++ + 
Sbjct: 71   GVTKHRVAIDRLIQLRIFIEVSDKKRESSYKLNQTFQANLRKHLTNGGVLPRETMAAVVK 130

Query: 460  LPTAEDLEKYTWNKWQDVLQVLVNPDTSTKETLV----FKIFSETKLLSSAGSSLDITAS 627
            LP+ E+L+ Y   +W+  L +L++   + K T +     KIF    L      +  +T  
Sbjct: 131  LPSLEELDTYALEQWECFLLLLISSGQAEKPTSLSSSMMKIFQRGLLSQRDRDAPRLTEG 190

Query: 628  GLNFLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRK 801
            G  FLLMD   Q+W+++REYI  ++E   +  DLISFL+EL F++ G+ Y++  L   ++
Sbjct: 191  GFQFLLMDTNAQLWYIIREYITNSEERGTEPADLISFLLELSFHVTGEAYNMNTLTEIQR 250

Query: 802  EVVKTLSSFGLVKFQIN--ENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAY 975
              +K L+  GLVK Q    E++FIPT+L++ L+  +SL  ++ + QGY+VVE N ++YAY
Sbjct: 251  NTIKDLAELGLVKLQQGRKESWFIPTKLATNLS--VSLTDSSSRKQGYVVVETNFRLYAY 308

Query: 976  TPSPVQKCILNLFIRIEYELPNMIVGTLTREKMYEAFDLGINSKQVVQFFSKHSN----K 1143
            + S +   IL LF +IEY+LPN+IVG +T+E +Y AF+ GI S Q++ F  ++++    +
Sbjct: 309  SSSKLHCEILRLFSKIEYQLPNLIVGAITKESLYTAFENGITSDQIISFLQQNAHPRVAE 368

Query: 1144 TTDKVPYSVATQIKLWEADKQRVKFDDAYLYDDFPTEDLYTNTLKHSMKIGAFLWKHQGR 1323
                VP +V  QI+LWEAD  RV+   ++ YD+FP+ D +      + +    LW+   +
Sbjct: 369  RLPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDTFEAACDFAREWNGLLWEDSKK 428

Query: 1324 KQVIVDSEKDGEMRKYMK 1377
             +V+V +E    MR++++
Sbjct: 429  MRVVVKAEIHMNMREFLR 446


>ref|XP_006827784.1| hypothetical protein AMTR_s00009p00265760 [Amborella trichopoda]
            gi|548832404|gb|ERM95200.1| hypothetical protein
            AMTR_s00009p00265760 [Amborella trichopoda]
          Length = 469

 Score =  259 bits (663), Expect = 2e-66
 Identities = 148/459 (32%), Positives = 256/459 (55%), Gaps = 34/459 (7%)
 Frame = +1

Query: 103  FRDKLKGWVSRNHNTYFDNLYVCITLFRFLSPPAKHYVLHLLYIDAKTDPEYVKKWIFPS 282
            F D +    +   ++ + N + C  + R L P +K YVL +LYIDA    + +++W+ P 
Sbjct: 11   FMDMVAALPASKLDSLYTNTFFCEAVLRSLPPVSKMYVLRMLYIDAAVSAKLMQEWVLPD 70

Query: 283  DLKSHDTLVRSLLEVKVLQKTYEGEA-VRNKLNQKFQNQMRKAIEKGFKPPNNFMSSHLN 459
                H   +  LL+++V  ++ + +  +  +LN K+Q  +RK +  G       M S + 
Sbjct: 71   SFSKHKAAIDRLLQLRVFTESIDRKREISYRLNPKYQENLRKYLVHGGTLSREPMPSSVT 130

Query: 460  --LPTAEDLEKYTWNKWQDVLQV------------------LVNPDTSTKET----LVFK 567
              LPT E+L+ Y   +W+  L                    L+N     + T     + K
Sbjct: 131  VRLPTLEELDAYALQQWEVALSAPFVCLYFAGNLEKCFLLQLINSSLVERPTNFSPSMMK 190

Query: 568  IFSETKLLSSAGSSLDITASGLNFLLMDMECQMWFVLREYIYKTQEAKRVD---LISFLI 738
            +F    + +    +  +T +G  FLLM+   Q+W+++REYI  T E + +D   LISFL+
Sbjct: 191  VFQRGLITTRDNEAPKLTENGFRFLLMETHTQLWYIMREYI-STSEGRGMDTAELISFLL 249

Query: 739  ELGFYIVGKPYSILDLPVSRKEVVKTLSSFGLVKFQIN--ENYFIPTELSSILASGMSLP 912
            EL F++ G+ Y++  L   ++  +K L++ GLVK Q    E++FIPT+L++ L+  +SL 
Sbjct: 250  ELSFHVTGEAYNMNTLTEVQQIAIKDLATLGLVKLQQGRKESWFIPTKLATNLS--VSLS 307

Query: 913  LNNLQYQGYIVVEINSKVYAYTPSPVQKCILNLFIRIEYELPNMIVGTLTREKMYEAFDL 1092
             ++ + +G++VVE N ++YAY+ S +   IL LF RIEY+LPN+IVG +T+E +Y AFD 
Sbjct: 308  DSSSRKEGFVVVETNFRLYAYSTSKLHCEILRLFCRIEYQLPNLIVGAITKESLYTAFDN 367

Query: 1093 GINSKQVVQFFSKHSN----KTTDKVPYSVATQIKLWEADKQRVKFDDAYLYDDFPTEDL 1260
            GI S+Q++ F  +H++    +    VP +V  QI+LWE D  RV+ + A+ Y+DFP+ D+
Sbjct: 368  GITSEQIILFLQQHAHPRVAQKAPAVPENVTDQIRLWETDLNRVEMNLAHFYEDFPSMDI 427

Query: 1261 YTNTLKHSMKIGAFLWKHQGRKQVIVDSEKDGEMRKYMK 1377
            Y     ++ ++G FLW+   + ++IV  E   EM+ +++
Sbjct: 428  YEAACDYARELGGFLWEDSKKMRLIVRGEMHEEMKDFLR 466


>ref|NP_974564.1| transcription factor-related protein [Arabidopsis thaliana]
            gi|332658438|gb|AEE83838.1| transcription factor-related
            protein [Arabidopsis thaliana]
          Length = 462

 Score =  258 bits (660), Expect = 4e-66
 Identities = 144/423 (34%), Positives = 241/423 (56%), Gaps = 15/423 (3%)
 Frame = +1

Query: 151  FDNLYVCITLFRFLSPPAKHYVLHLLYIDAKTDPEYVKKWIFPSDLKSHDTLVRSLLEVK 330
            ++N+++C  + R L P AK YVL +LYID       +++W+       H   +  L++++
Sbjct: 27   YNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPATMMEEWVLADGTSKHRVAIDRLIQLR 86

Query: 331  VLQKTYEGE-AVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSH--LNLPTAEDLEKYTWNK 501
            +  +  + +      LN  FQN ++K I  G   P   M+S   + LP+ ++LE Y   +
Sbjct: 87   IFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVLPREPMNSDNAIKLPSLQELETYALKQ 146

Query: 502  WQDVLQVLVNPDTSTKETLV----FKIFSETKLLSSAGSSLDITASGLNFLLMDMECQMW 669
            W+  L  L+N     K T +     KIF    L         +T SG  FLLMD   Q+W
Sbjct: 147  WECFLLQLINSGQGEKLTGISSSMMKIFQRGLLSQRDKDGPRLTESGFQFLLMDTNAQLW 206

Query: 670  FVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTLSSFGLVKF 843
            +++REYI   +E      DLISFL+EL F++ G+ Y++  L   +   +K L+  GLVK 
Sbjct: 207  YIIREYILNAEERDVDPADLISFLLELSFHVTGQAYNLNTLTEVQNNTLKDLADLGLVKL 266

Query: 844  QIN--ENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQKCILNLFI 1017
            Q    +++FIPT+L++ L+  +SL  ++ + +G++V+E N ++YAY+ S +Q  IL LF 
Sbjct: 267  QQGRKDSWFIPTKLATNLS--VSLADSSARKEGFVVMETNFRMYAYSTSKLQCEILRLFA 324

Query: 1018 RIEYELPNMIVGTLTREKMYEAFDLGINSKQVVQFFSKHSN-KTTDKV---PYSVATQIK 1185
            RIEY+LPN+I   +T+E +Y AFD GI S Q++ F  ++S+ +  D+V   P +V  QI+
Sbjct: 325  RIEYQLPNLIACAITKESLYNAFDNGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIR 384

Query: 1186 LWEADKQRVKFDDAYLYDDFPTEDLYTNTLKHSMKIGAFLWKHQGRKQVIVDSEKDGEMR 1365
            LWE D QR++   A+ YD+FP++D++      + +    LW+   R +++V SE   +MR
Sbjct: 385  LWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQMR 444

Query: 1366 KYM 1374
            +++
Sbjct: 445  EFL 447


>ref|NP_193435.2| transcription factor-related protein [Arabidopsis thaliana]
            gi|51969678|dbj|BAD43531.1| unnamed protein product
            [Arabidopsis thaliana] gi|115646777|gb|ABJ17114.1|
            At4g17020 [Arabidopsis thaliana]
            gi|332658439|gb|AEE83839.1| transcription factor-related
            protein [Arabidopsis thaliana]
          Length = 452

 Score =  258 bits (660), Expect = 4e-66
 Identities = 144/423 (34%), Positives = 241/423 (56%), Gaps = 15/423 (3%)
 Frame = +1

Query: 151  FDNLYVCITLFRFLSPPAKHYVLHLLYIDAKTDPEYVKKWIFPSDLKSHDTLVRSLLEVK 330
            ++N+++C  + R L P AK YVL +LYID       +++W+       H   +  L++++
Sbjct: 27   YNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPATMMEEWVLADGTSKHRVAIDRLIQLR 86

Query: 331  VLQKTYEGE-AVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSH--LNLPTAEDLEKYTWNK 501
            +  +  + +      LN  FQN ++K I  G   P   M+S   + LP+ ++LE Y   +
Sbjct: 87   IFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVLPREPMNSDNAIKLPSLQELETYALKQ 146

Query: 502  WQDVLQVLVNPDTSTKETLV----FKIFSETKLLSSAGSSLDITASGLNFLLMDMECQMW 669
            W+  L  L+N     K T +     KIF    L         +T SG  FLLMD   Q+W
Sbjct: 147  WECFLLQLINSGQGEKLTGISSSMMKIFQRGLLSQRDKDGPRLTESGFQFLLMDTNAQLW 206

Query: 670  FVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTLSSFGLVKF 843
            +++REYI   +E      DLISFL+EL F++ G+ Y++  L   +   +K L+  GLVK 
Sbjct: 207  YIIREYILNAEERDVDPADLISFLLELSFHVTGQAYNLNTLTEVQNNTLKDLADLGLVKL 266

Query: 844  QIN--ENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQKCILNLFI 1017
            Q    +++FIPT+L++ L+  +SL  ++ + +G++V+E N ++YAY+ S +Q  IL LF 
Sbjct: 267  QQGRKDSWFIPTKLATNLS--VSLADSSARKEGFVVMETNFRMYAYSTSKLQCEILRLFA 324

Query: 1018 RIEYELPNMIVGTLTREKMYEAFDLGINSKQVVQFFSKHSN-KTTDKV---PYSVATQIK 1185
            RIEY+LPN+I   +T+E +Y AFD GI S Q++ F  ++S+ +  D+V   P +V  QI+
Sbjct: 325  RIEYQLPNLIACAITKESLYNAFDNGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIR 384

Query: 1186 LWEADKQRVKFDDAYLYDDFPTEDLYTNTLKHSMKIGAFLWKHQGRKQVIVDSEKDGEMR 1365
            LWE D QR++   A+ YD+FP++D++      + +    LW+   R +++V SE   +MR
Sbjct: 385  LWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQMR 444

Query: 1366 KYM 1374
            +++
Sbjct: 445  EFL 447


>ref|NP_001190745.1| transcription factor-related protein [Arabidopsis thaliana]
            gi|332658440|gb|AEE83840.1| transcription factor-related
            protein [Arabidopsis thaliana]
          Length = 482

 Score =  258 bits (660), Expect = 4e-66
 Identities = 144/423 (34%), Positives = 241/423 (56%), Gaps = 15/423 (3%)
 Frame = +1

Query: 151  FDNLYVCITLFRFLSPPAKHYVLHLLYIDAKTDPEYVKKWIFPSDLKSHDTLVRSLLEVK 330
            ++N+++C  + R L P AK YVL +LYID       +++W+       H   +  L++++
Sbjct: 27   YNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPATMMEEWVLADGTSKHRVAIDRLIQLR 86

Query: 331  VLQKTYEGE-AVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSH--LNLPTAEDLEKYTWNK 501
            +  +  + +      LN  FQN ++K I  G   P   M+S   + LP+ ++LE Y   +
Sbjct: 87   IFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVLPREPMNSDNAIKLPSLQELETYALKQ 146

Query: 502  WQDVLQVLVNPDTSTKETLV----FKIFSETKLLSSAGSSLDITASGLNFLLMDMECQMW 669
            W+  L  L+N     K T +     KIF    L         +T SG  FLLMD   Q+W
Sbjct: 147  WECFLLQLINSGQGEKLTGISSSMMKIFQRGLLSQRDKDGPRLTESGFQFLLMDTNAQLW 206

Query: 670  FVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTLSSFGLVKF 843
            +++REYI   +E      DLISFL+EL F++ G+ Y++  L   +   +K L+  GLVK 
Sbjct: 207  YIIREYILNAEERDVDPADLISFLLELSFHVTGQAYNLNTLTEVQNNTLKDLADLGLVKL 266

Query: 844  QIN--ENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQKCILNLFI 1017
            Q    +++FIPT+L++ L+  +SL  ++ + +G++V+E N ++YAY+ S +Q  IL LF 
Sbjct: 267  QQGRKDSWFIPTKLATNLS--VSLADSSARKEGFVVMETNFRMYAYSTSKLQCEILRLFA 324

Query: 1018 RIEYELPNMIVGTLTREKMYEAFDLGINSKQVVQFFSKHSN-KTTDKV---PYSVATQIK 1185
            RIEY+LPN+I   +T+E +Y AFD GI S Q++ F  ++S+ +  D+V   P +V  QI+
Sbjct: 325  RIEYQLPNLIACAITKESLYNAFDNGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIR 384

Query: 1186 LWEADKQRVKFDDAYLYDDFPTEDLYTNTLKHSMKIGAFLWKHQGRKQVIVDSEKDGEMR 1365
            LWE D QR++   A+ YD+FP++D++      + +    LW+   R +++V SE   +MR
Sbjct: 385  LWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQMR 444

Query: 1366 KYM 1374
            +++
Sbjct: 445  EFL 447


>ref|XP_002868091.1| hypothetical protein ARALYDRAFT_493174 [Arabidopsis lyrata subsp.
            lyrata] gi|297313927|gb|EFH44350.1| hypothetical protein
            ARALYDRAFT_493174 [Arabidopsis lyrata subsp. lyrata]
          Length = 452

 Score =  258 bits (660), Expect = 4e-66
 Identities = 143/423 (33%), Positives = 243/423 (57%), Gaps = 15/423 (3%)
 Frame = +1

Query: 151  FDNLYVCITLFRFLSPPAKHYVLHLLYIDAKTDPEYVKKWIFPSDLKSHDTLVRSLLEVK 330
            ++N+++C  + R L P AK YVL +LYI+       +++W+       H   +  L++++
Sbjct: 27   YNNVFICEAILRSLPPLAKKYVLQMLYINVPVPAAMMEEWVLADGASKHRVAIDRLIQLR 86

Query: 331  VLQKTYEGE-AVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSH--LNLPTAEDLEKYTWNK 501
            +  +T + +  +   LN  FQN ++K I  G   P   M S   + LP+ ++LE Y   +
Sbjct: 87   IFSETSDRKRGISYSLNPTFQNNLQKHIISGGVLPREPMHSDNAIKLPSLQELETYALKQ 146

Query: 502  WQDVLQVLVNPDTSTKETLV----FKIFSETKLLSSAGSSLDITASGLNFLLMDMECQMW 669
            W+  L  L+N     K T +     +IF    L         +T SG  FLLMD   Q+W
Sbjct: 147  WECFLLQLINSGQGEKLTGISSSMMRIFQRGLLSQRDKDGPRLTESGFQFLLMDTNAQLW 206

Query: 670  FVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTLSSFGLVKF 843
            +++REYI   +E   +  DLISFL+EL F++ G+ Y+   L   +   +K L+  GLVK 
Sbjct: 207  YIIREYISNAEERDVEPADLISFLLELSFHVTGEAYNSNTLTEVQNNTLKDLADLGLVKL 266

Query: 844  QIN--ENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQKCILNLFI 1017
            Q    +++FIPT+L++ L+  +SL  ++ + +G++V+E N ++YAY+ S +Q  IL LF 
Sbjct: 267  QQGRKDSWFIPTKLATNLS--VSLADSSARKEGFVVMETNFRMYAYSTSKLQCEILRLFA 324

Query: 1018 RIEYELPNMIVGTLTREKMYEAFDLGINSKQVVQFFSKHSN-KTTDKV---PYSVATQIK 1185
            RIEY+LPN+I   +T+E +Y AFD GI S Q++ F  ++S+ +  D+V   P +V  QI+
Sbjct: 325  RIEYQLPNLIACAITKESLYNAFDNGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIR 384

Query: 1186 LWEADKQRVKFDDAYLYDDFPTEDLYTNTLKHSMKIGAFLWKHQGRKQVIVDSEKDGEMR 1365
            LWE D +R++   A+ YD+FP++D++      + + G  LW+   R +++V SE   +MR
Sbjct: 385  LWETDLKRIEMTQAHFYDEFPSKDVFEAACDFAREWGGLLWEDSKRMRLVVKSEVHNQMR 444

Query: 1366 KYM 1374
            +++
Sbjct: 445  EFL 447


>ref|XP_006414285.1| hypothetical protein EUTSA_v10025179mg [Eutrema salsugineum]
            gi|557115455|gb|ESQ55738.1| hypothetical protein
            EUTSA_v10025179mg [Eutrema salsugineum]
          Length = 452

 Score =  258 bits (658), Expect = 6e-66
 Identities = 143/439 (32%), Positives = 250/439 (56%), Gaps = 15/439 (3%)
 Frame = +1

Query: 103  FRDKLKGWVSRNHNTYFDNLYVCITLFRFLSPPAKHYVLHLLYIDAKTDPEYVKKWIFPS 282
            F D +    +   +  ++N+++C  + R L P AK YVL LLY D       +++W+   
Sbjct: 11   FMDMVASLTAIKLDKLYNNVFICEAILRSLPPLAKKYVLQLLYTDVPVPATMLEEWVLAD 70

Query: 283  DLKSHDTLVRSLLEVKVLQKTYEGE-AVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSH-- 453
             +  H   +  ++++++  +T + +      LN  FQ  ++K I  G   P   M+S+  
Sbjct: 71   GVSKHRAAIDRMIQLRIFMETTDRKKGTSYSLNPTFQKNLQKHIISGGVLPREPMNSNNA 130

Query: 454  LNLPTAEDLEKYTWNKWQDVLQVLVNPDTSTKETLV----FKIFSETKLLSSAGSSLDIT 621
            + LP+ ++LE Y   +W+  L  L+N     K T +     KIF    L         +T
Sbjct: 131  IKLPSLQELETYALQQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLSQRDRDGPRLT 190

Query: 622  ASGLNFLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVS 795
             SG  FLLMD   Q+W+++REYI   +E      +LISFL+EL F++ G+ Y++  L   
Sbjct: 191  ESGFQFLLMDTNAQLWYIIREYISNAEERDVDPAELISFLLELSFHVTGEAYNLNTLTEV 250

Query: 796  RKEVVKTLSSFGLVKFQIN--ENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVY 969
            ++  +K L+  GLVK Q    +++FIPT+L++ L+  +SL  ++++ +GY+++E N ++Y
Sbjct: 251  QRNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLS--VSLADSSIRKEGYVMMETNFRMY 308

Query: 970  AYTPSPVQKCILNLFIRIEYELPNMIVGTLTREKMYEAFDLGINSKQVVQFFSKHSN-KT 1146
            AY+ S +Q  IL LF RIEY+LPN+I   +T+E +Y AFD GI S Q++ F  ++S+ + 
Sbjct: 309  AYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFLQQNSHPRC 368

Query: 1147 TDKV---PYSVATQIKLWEADKQRVKFDDAYLYDDFPTEDLYTNTLKHSMKIGAFLWKHQ 1317
             D+V   P +V  QI+LWE+D +R++   A+ YD+FP++D++      + +    LW+  
Sbjct: 369  ADRVPSIPENVTDQIRLWESDLKRIEMTQAHFYDEFPSKDVFEAACDFAREWRGLLWEDS 428

Query: 1318 GRKQVIVDSEKDGEMRKYM 1374
             R +++V SE   +MR+++
Sbjct: 429  KRMRLVVKSEVHNKMREFL 447


>ref|XP_004294031.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
            subunit 4-like [Fragaria vesca subsp. vesca]
          Length = 453

 Score =  257 bits (657), Expect = 8e-66
 Identities = 143/441 (32%), Positives = 247/441 (56%), Gaps = 17/441 (3%)
 Frame = +1

Query: 103  FRDKLKGWVSRNHNTYFDNLYVCITLFRFLSPPAKHYVLHLLYIDAKTDPEYVKKWIFPS 282
            F D +    +   +  +DN ++C  + R L P AK YVL +L ++   + + +++W+ P 
Sbjct: 11   FMDMVAALPAMKLDKLYDNSFICEAILRSLPPLAKKYVLQMLCVEFPVNSKSMEEWVLPD 70

Query: 283  DLKSHDTLVRSLLEVKVLQKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSHLN- 459
                H   V  L+++++  +T +   V   LN  FQ  + K +  G   P   M S++  
Sbjct: 71   GASKHRVAVDRLVQLRIFTETRKKGDVTYTLNPIFQTNLNKLLVYGVVLPREPMPSNVTV 130

Query: 460  -LPTAEDLEKYTWNKWQDVLQVLVNPDTSTKETLV----FKIFSETKLLSSAGSSLDITA 624
             LP++E+LE +   +W+  L  L+N   + + + +     K F    +      +  +T 
Sbjct: 131  RLPSSEELEAFALEQWECFLLQLINSSQTDRPSNISSSMMKTFQRGLVTQRDREAPRLTE 190

Query: 625  SGLNFLLMDMECQMWFVLREYIYKTQEA--KRVDLISFLIELGFYIVGKPYSILDLPVSR 798
            SG  FLLMD   Q+W+++REYI  ++E      DLI+FL+EL F++ G+ Y+I  L   +
Sbjct: 191  SGFQFLLMDTNAQLWYIIREYITSSEERGIDSADLIAFLLELSFHVTGEAYNINTLTELQ 250

Query: 799  KEVVKTLSSFGLVKFQIN--ENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYA 972
            K  +K  +  GLVK Q    E++FIPT+L++ L+  +SL   + + QG++VVE N ++YA
Sbjct: 251  KNTIKDFTDLGLVKLQQGRKESWFIPTKLATNLS--VSLTDTSSRKQGFVVVETNFRLYA 308

Query: 973  YTPSPVQKCILNLFIRIEYELPNMIVGTLTREKMYEAFDLGINSKQVVQFFSKHSN---- 1140
            Y+ S +   IL LF R+EY+LPN+IVG +T+E +Y AFD  I ++Q++ F  ++++    
Sbjct: 309  YSSSKLHCEILRLFARVEYQLPNLIVGAITKESLYGAFDNCITAEQIISFLKQNAHPRVA 368

Query: 1141 KTTDKVPYSVATQIKLWEADKQRVKFDDAYLYDDFPTEDLYTNTLKHSMKIGAFLWK--- 1311
            +    VP +V  QI+LWE D  RV+  +AY+YD+FP+ DL+   + ++      LW+   
Sbjct: 369  ERIPSVPENVTDQIRLWETDLNRVEMTNAYIYDEFPSRDLFDGAVDYARSYNGLLWEAPD 428

Query: 1312 HQGRKQVIVDSEKDGEMRKYM 1374
               + +++V SE    MR+Y+
Sbjct: 429  DSKKMRLVVRSENHVHMREYL 449