BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00023041
         (413 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004699176.1| RNP-1 like RNA-binding protein [Treponema ca...    71   1e-10
ref|XP_006340998.1| PREDICTED: cold-inducible RNA-binding protei...    69   5e-10
ref|YP_004526165.1| RNP-1 like RNA-binding protein [Treponema az...    69   5e-10
ref|XP_004976601.1| PREDICTED: glycine-rich RNA-binding protein-...    69   6e-10
ref|XP_004246450.1| PREDICTED: RNA-binding motif protein, X chro...    69   6e-10
ref|WP_010253056.1| RNA-binding protein [Treponema primitia]           69   8e-10
ref|XP_002966307.1| hypothetical protein SELMODRAFT_439636 [Sela...    69   8e-10
ref|XP_006478116.1| PREDICTED: glycine-rich RNA-binding protein ...    68   1e-09
gb|EFW22034.1| polyadenylation factor subunit CstF64 [Coccidioid...    68   1e-09
ref|XP_003066112.1| RNA recognition motif containing protein [Co...    68   1e-09
ref|XP_001769839.1| predicted protein [Physcomitrella patens] gi...    68   1e-09
ref|XP_001247252.1| hypothetical protein CIMG_01023 [Coccidioide...    68   1e-09
gb|ETX00256.1| RNA-binding protein [Candidatus Entotheonella sp....    67   2e-09
ref|XP_004515251.1| PREDICTED: glycine-rich RNA-binding protein ...    67   2e-09
ref|XP_006441346.1| hypothetical protein CICLE_v10022555mg [Citr...    67   2e-09
ref|XP_004301228.1| PREDICTED: cold-inducible RNA-binding protei...    67   2e-09
gb|EJY69916.1| RNA binding domain-containing protein 28 [Oxytric...    67   2e-09
emb|CCI55328.1| PH01B001I13.24 [Phyllostachys edulis]                  67   3e-09
gb|AFK40678.1| unknown [Lotus japonicus]                               67   3e-09
ref|NP_001237108.1| uncharacterized protein LOC100305561 [Glycin...    67   3e-09

>ref|YP_004699176.1| RNP-1 like RNA-binding protein [Treponema caldaria DSM 7334]
           gi|503735870|ref|WP_013969946.1| RNA-binding protein
           [Treponema caldaria] gi|338835490|gb|AEJ20668.1| RNP-1
           like RNA-binding protein [Treponema caldaria DSM 7334]
          Length = 116

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 30/90 (33%), Positives = 56/90 (62%)
 Frame = -3

Query: 408 SSSTSIFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKA 229
           S +  +++G +S    E+ +R++F  FG++    ++   ETG  KG+ F+E +T+EEA A
Sbjct: 21  SMAKKLYVGNLSYNTSEDSLRNLFSNFGSVASAKIIFDRETGNSKGFGFVEMSTDEEASA 80

Query: 228 AVAGMHGNYFRGRKMRVELHSGELRNKQED 139
           A+AG +G  F GR++RV     + R ++++
Sbjct: 81  AIAGTNGREFEGRQLRVNEAMDKPRRERDN 110


>ref|XP_006340998.1| PREDICTED: cold-inducible RNA-binding protein-like [Solanum
           tuberosum]
          Length = 163

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 32/79 (40%), Positives = 51/79 (64%)
 Frame = -3

Query: 408 SSSTSIFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKA 229
           +SST +F+ G+S    EE +R  F  FG + ++NL++       +G+AFI +ATEEE++ 
Sbjct: 67  NSSTKLFVSGLSFRTTEESLRKAFNNFGELVEVNLMMDKIANRPRGFAFIRYATEEESQK 126

Query: 228 AVAGMHGNYFRGRKMRVEL 172
           A+ GMHG +  GR + VE+
Sbjct: 127 AIEGMHGKFLDGRVIFVEV 145


>ref|YP_004526165.1| RNP-1 like RNA-binding protein [Treponema azotonutricium ZAS-9]
           gi|505824900|ref|WP_015710278.1| RNA-binding protein
           [Treponema azotonutricium] gi|333734416|gb|AEF80365.1|
           RNP-1 like RNA-binding protein [Treponema azotonutricium
           ZAS-9]
          Length = 100

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 28/72 (38%), Positives = 50/72 (69%)
 Frame = -3

Query: 393 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 214
           +++G +S    E+ +R++F +FG +T   ++   E+G+ KG+ FIE +T+EEA AA+ G 
Sbjct: 5   LYVGNLSYQTTEDGLRNLFSQFGNVTSSKIIFDRESGSSKGFGFIEMSTDEEAAAAITGT 64

Query: 213 HGNYFRGRKMRV 178
           +G+ F GR++RV
Sbjct: 65  NGHEFEGRQLRV 76


>ref|XP_004976601.1| PREDICTED: glycine-rich RNA-binding protein-like [Setaria italica]
          Length = 147

 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 30/78 (38%), Positives = 52/78 (66%)
 Frame = -3

Query: 405 SSTSIFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAA 226
           ++T +++ G+S    EE +R+ F+KFG +T++NLV+       +G+AF+ +A EE+ K A
Sbjct: 63  AATRLYVHGLSFRTTEESLRNAFEKFGDLTEVNLVMDRAAKRPRGFAFVSYADEEQTKTA 122

Query: 225 VAGMHGNYFRGRKMRVEL 172
           + GMHG +  GR + VE+
Sbjct: 123 IEGMHGKFLDGRVIFVEV 140


>ref|XP_004246450.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Solanum
           lycopersicum]
          Length = 160

 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 32/79 (40%), Positives = 51/79 (64%)
 Frame = -3

Query: 408 SSSTSIFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKA 229
           +SST +F+ G+S    EE +R  F  FG + ++NL++       +G+AFI +ATEEE++ 
Sbjct: 67  NSSTKLFVSGLSFRTTEESLRKTFNHFGELVEVNLMMDKIANRPRGFAFIRYATEEESQK 126

Query: 228 AVAGMHGNYFRGRKMRVEL 172
           A+ GMHG +  GR + VE+
Sbjct: 127 AIEGMHGKFLDGRVIFVEV 145


>ref|WP_010253056.1| RNA-binding protein [Treponema primitia]
          Length = 99

 Score = 68.6 bits (166), Expect = 8e-10
 Identities = 29/72 (40%), Positives = 48/72 (66%)
 Frame = -3

Query: 393 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 214
           +++G +S    E+ +R++F +FG++    ++   ETG  KG+ FIE  T+EEA AA+AG 
Sbjct: 5   LYVGNLSYNTTEDGLRNLFSEFGSVASSKIIFDRETGNSKGFGFIEMGTDEEASAAIAGT 64

Query: 213 HGNYFRGRKMRV 178
           +G  F GR++RV
Sbjct: 65  NGREFDGRQLRV 76


>ref|XP_002966307.1| hypothetical protein SELMODRAFT_439636 [Selaginella moellendorffii]
           gi|300165727|gb|EFJ32334.1| hypothetical protein
           SELMODRAFT_439636 [Selaginella moellendorffii]
          Length = 289

 Score = 68.6 bits (166), Expect = 8e-10
 Identities = 34/88 (38%), Positives = 55/88 (62%)
 Frame = -3

Query: 411 MSSSTSIFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAK 232
           +S  TS+++GG++  V E+ +R  F++FG I K+ ++  H+ G  +GY FI FAT E A 
Sbjct: 3   VSDQTSVYVGGLAYDVTEDLIRSTFEEFGEIDKVKIIQDHD-GQSRGYGFITFATSEAAN 61

Query: 231 AAVAGMHGNYFRGRKMRVELHSGELRNK 148
            A+ GM+G    GR +RV     E++N+
Sbjct: 62  GAIYGMNGKVVAGRSIRV----NEVKNR 85


>ref|XP_006478116.1| PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like
           isoform X1 [Citrus sinensis]
          Length = 171

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 31/85 (36%), Positives = 52/85 (61%)
 Frame = -3

Query: 399 TSIFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVA 220
           T +F+ G+S    E+ +R+ FQ FG + ++NLV+       +G+AF+ +ATEEE++ A+ 
Sbjct: 78  TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137

Query: 219 GMHGNYFRGRKMRVELHSGELRNKQ 145
           GMHG +  GR + VE+       +Q
Sbjct: 138 GMHGKFLDGRVIFVEIAKSRAELRQ 162


>gb|EFW22034.1| polyadenylation factor subunit CstF64 [Coccidioides posadasii str.
           Silveira]
          Length = 307

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
 Frame = -3

Query: 396 SIFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAG 217
           S+FLG +   + EE V+ +    GT+TK  L+V+ ETG  KGY F +FA  + A +AV  
Sbjct: 9   SVFLGNIPYTLTEEQVKDILSSAGTVTKFRLMVNPETGKPKGYGFADFADADAAASAVRN 68

Query: 216 MHGNYFRGRKMRVEL-HSGELRNKQEDASSEAQVSSEG 106
           ++     GRK+RV+  H+ E  +   D S + Q S+ G
Sbjct: 69  LNDYEIMGRKIRVDWPHNNEKDSVPLDYSQQGQASAAG 106


>ref|XP_003066112.1| RNA recognition motif containing protein [Coccidioides posadasii
           C735 delta SOWgp] gi|240105774|gb|EER23967.1| RNA
           recognition motif containing protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 307

 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
 Frame = -3

Query: 396 SIFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAG 217
           S+FLG +   + EE V+ +    GT+TK  L+++ ETG  KGY F +FA  + A +AV  
Sbjct: 9   SVFLGNIPYTLTEEQVKDILSSAGTVTKFRLMINPETGKPKGYGFADFADADAAASAVRN 68

Query: 216 MHGNYFRGRKMRVEL-HSGELRNKQEDASSEAQVSSEG 106
           ++     GRK+RV+  H+ E  +   D S + Q S+ G
Sbjct: 69  LNDYEIMGRKIRVDWPHNNEKDSVPLDYSQQGQASAAG 106


>ref|XP_001769839.1| predicted protein [Physcomitrella patens]
           gi|162678948|gb|EDQ65401.1| predicted protein
           [Physcomitrella patens]
          Length = 133

 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 29/86 (33%), Positives = 53/86 (61%)
 Frame = -3

Query: 411 MSSSTSIFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAK 232
           M SS+ +F+GG++    E  +R  F  FGT+T++ +++  +TG  +G+ F+ F + EEA+
Sbjct: 41  MMSSSKLFIGGLAWATDENTLRDAFSSFGTVTEVKIILDRDTGRSRGFGFVNFTSPEEAE 100

Query: 231 AAVAGMHGNYFRGRKMRVELHSGELR 154
            A+  M G    GR++RV+  + + R
Sbjct: 101 VALQEMDGRELAGRQIRVDYATDKAR 126


>ref|XP_001247252.1| hypothetical protein CIMG_01023 [Coccidioides immitis RS]
           gi|392863509|gb|EAS35737.2| polyadenylation factor
           subunit CstF64 [Coccidioides immitis RS]
          Length = 307

 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
 Frame = -3

Query: 396 SIFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAG 217
           S+FLG +   + EE V+ +    GT+TK  L+++ ETG  KGY F +FA  + A +AV  
Sbjct: 9   SVFLGNIPYTLTEEQVKDILSSAGTVTKFRLMINPETGKPKGYGFADFADADAAASAVRN 68

Query: 216 MHGNYFRGRKMRVEL-HSGELRNKQEDASSEAQVSSEG 106
           ++     GRK+RV+  H+ E  +   D S + Q S+ G
Sbjct: 69  LNDYEIMGRKIRVDWPHNNEKDSVPLDYSQQGQASAAG 106


>gb|ETX00256.1| RNA-binding protein [Candidatus Entotheonella sp. TSY1]
          Length = 105

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 29/74 (39%), Positives = 49/74 (66%)
 Frame = -3

Query: 399 TSIFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVA 220
           T+I++G +   V  E VR +F+  GT+  +NL+   ETG  +G+ F+E +++EEA AA+A
Sbjct: 3   TNIYVGNLPFSVTPEEVRDLFEIHGTVESVNLITDRETGRLRGFGFVEMSSDEEASAAIA 62

Query: 219 GMHGNYFRGRKMRV 178
            +HG+  +GR + V
Sbjct: 63  ALHGSQCQGRTLTV 76


>ref|XP_004515251.1| PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like
           [Cicer arietinum]
          Length = 183

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 30/79 (37%), Positives = 50/79 (63%)
 Frame = -3

Query: 408 SSSTSIFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKA 229
           S ST +++ G+S    EE +R+ F+ FG + ++NLV+       +G+ F+ + TEEE+K 
Sbjct: 89  SPSTKLYVSGLSFRTTEESLRNAFKNFGQLVEVNLVMDKVANRPRGFGFLRYETEEESKK 148

Query: 228 AVAGMHGNYFRGRKMRVEL 172
           A+ GMHG +  GR + VE+
Sbjct: 149 AIEGMHGKFLDGRVIFVEV 167


>ref|XP_006441346.1| hypothetical protein CICLE_v10022555mg [Citrus clementina]
           gi|567897718|ref|XP_006441347.1| hypothetical protein
           CICLE_v10022555mg [Citrus clementina]
           gi|557543608|gb|ESR54586.1| hypothetical protein
           CICLE_v10022555mg [Citrus clementina]
           gi|557543609|gb|ESR54587.1| hypothetical protein
           CICLE_v10022555mg [Citrus clementina]
          Length = 171

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 30/85 (35%), Positives = 52/85 (61%)
 Frame = -3

Query: 399 TSIFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVA 220
           T +F+ G+S    E+ +R+ FQ FG + ++NL++       +G+AF+ +ATEEE++ A+ 
Sbjct: 78  TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLMMDKIANRPRGFAFLRYATEEESRRAIE 137

Query: 219 GMHGNYFRGRKMRVELHSGELRNKQ 145
           GMHG +  GR + VE+       +Q
Sbjct: 138 GMHGKFLDGRVIFVEIAKSRAELRQ 162


>ref|XP_004301228.1| PREDICTED: cold-inducible RNA-binding protein-like [Fragaria vesca
           subsp. vesca]
          Length = 166

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 30/78 (38%), Positives = 49/78 (62%)
 Frame = -3

Query: 408 SSSTSIFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKA 229
           S  T +++ G+S    EE +R+ FQ FG + ++NLV+       +G+AF+ + TEEE++ 
Sbjct: 70  SPKTKLYVSGLSFRTTEESLRNAFQNFGRLVEVNLVMDRIANRPRGFAFLRYETEEESQK 129

Query: 228 AVAGMHGNYFRGRKMRVE 175
           A+ GMHG +  GR + VE
Sbjct: 130 AIKGMHGKFLDGRVIFVE 147


>gb|EJY69916.1| RNA binding domain-containing protein 28 [Oxytricha trifallax]
          Length = 732

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 29/64 (45%), Positives = 46/64 (71%)
 Frame = -3

Query: 366 VKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGMHGNYFRGRK 187
           +KE H++  FQKFGTI  +N+ + +E    +G+ FIEF+T+EEA+ A+ GM+G  ++GR 
Sbjct: 41  LKEPHLKKEFQKFGTIVAVNVPIKNENNLNRGFGFIEFSTKEEAQKAIDGMNGQKYKGRV 100

Query: 186 MRVE 175
           + VE
Sbjct: 101 LAVE 104


>emb|CCI55328.1| PH01B001I13.24 [Phyllostachys edulis]
          Length = 196

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 30/80 (37%), Positives = 52/80 (65%)
 Frame = -3

Query: 411 MSSSTSIFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAK 232
           + +  ++F+ G+S    EE +R  F++FG +T++NLV+       +G+AF+ +A EEE+K
Sbjct: 112 LHAHVALFIEGLSFRTTEESLRSAFERFGQLTEVNLVMDRVAKRPRGFAFLSYANEEESK 171

Query: 231 AAVAGMHGNYFRGRKMRVEL 172
            A+ GMHG +  GR + VE+
Sbjct: 172 NAMEGMHGKFLDGRVIFVEV 191


>gb|AFK40678.1| unknown [Lotus japonicus]
          Length = 187

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
 Frame = -3

Query: 402 STSIFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAV 223
           ST +++ G+S    EE +R+ F+ FG +  +NLV+       +G+AF+ +ATEEE++ A+
Sbjct: 93  STRLYVSGLSFRTTEESLRNCFKNFGQLVDVNLVMDKLANRPRGFAFLRYATEEESQKAI 152

Query: 222 AGMHGNYFRGRKMRVELHS--GELRNK 148
            GMHG +  GR + VE+     ELR +
Sbjct: 153 EGMHGKFLDGRVIFVEVAKPRSELRQR 179


>ref|NP_001237108.1| uncharacterized protein LOC100305561 [Glycine max]
           gi|255625921|gb|ACU13305.1| unknown [Glycine max]
          Length = 180

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
 Frame = -3

Query: 408 SSSTSIFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKA 229
           S  T +++ G+S    EE +R+ F+ FG + ++ LV+       +G+AF+ +ATEEE++ 
Sbjct: 85  SPQTKLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQK 144

Query: 228 AVAGMHGNYFRGRKMRVEL---HSGELRNKQED 139
           A+ GMHG +  GR + VE+    S     KQED
Sbjct: 145 AIEGMHGKFLDGRVIFVEVAKPRSELAPRKQED 177