BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00022728
         (1317 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [A...   217   8e-54
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...   199   2e-48
gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico...   195   4e-47
ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   193   2e-46
ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis...   193   2e-46
ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   190   1e-45
gb|ESW27397.1| hypothetical protein PHAVU_003G198500g [Phaseolus...   188   4e-45
ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   186   1e-44
ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   184   5e-44
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   184   9e-44
gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]       183   1e-43
ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc...   182   2e-43
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   181   5e-43
gb|EMT27792.1| Putative RNA-dependent RNA polymerase 1 [Aegilops...   181   5e-43
gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare su...   181   5e-43
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   181   6e-43
ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Popu...   180   1e-42
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   179   3e-42
ref|XP_004953848.1| PREDICTED: probable RNA-dependent RNA polyme...   178   4e-42
gb|EMS66194.1| RNA-dependent RNA polymerase 1 [Triticum urartu]       178   5e-42

>ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [Amborella trichopoda]
            gi|548839203|gb|ERM99496.1| hypothetical protein
            AMTR_s00088p00026960 [Amborella trichopoda]
          Length = 1107

 Score =  217 bits (553), Expect = 8e-54
 Identities = 140/389 (35%), Positives = 211/389 (54%), Gaps = 6/389 (1%)
 Frame = -2

Query: 1157 STVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATK 978
            STV +  +P + +A EL++FL+S +G  S+F+C I TER NWKS G   VQF+    A K
Sbjct: 4    STVKVSTIPLSALAEELLQFLESHIGPRSIFACTIVTERRNWKSKGFGRVQFETCNDAKK 63

Query: 977  ICNRSTKGGLIIEGYHLDLKLRDKDHIHRPC---YSVSGGVLSAGNMVSESALSVLWSAK 807
              + S +G L+ +G HL L L  +D + RPC     V+GG L  G +V E ++SV+ S  
Sbjct: 64   ANDLSLEGKLVFQGNHLSLTLGCEDIVPRPCRVENRVNGGFLKVGCLVYEDSMSVIGSWN 123

Query: 806  DCNAEFSFQGQKISFYVVHGREEYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIF 627
               AE   + +++ FYV    E +K+E R +DI  T       T+   ILL+++   RI+
Sbjct: 124  LVKAELMPERKRVDFYVSERGELFKLETRFEDIVETFGCQIGGTNFDAILLQIKYAPRIY 183

Query: 626  QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCVFGQASLFCLDFANGRKHPAFM 447
             K+    S S   ++ +  CKE+ +  W+RTTDFS +   GQ++ FC             
Sbjct: 184  CKV---PSSSKCGRDRYHICKEEYEFDWVRTTDFSASRTIGQSTYFCWMLHESTDIAIIK 240

Query: 446  ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 267
            ++ P  + +Q  L ++  V       LVP +       L Y+I F+LN+LVH G +S PT
Sbjct: 241  KSFPHHKEIQ-TLYLDKGVSFCSSSDLVPIINTLPDCKLAYEILFQLNALVHAGKISGPT 299

Query: 266  LTCEFFDVLT-NHNYSPPHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLI 90
            +  +  D+L  N N +     +AL++L KS  TC  P + +Q  + ++   N K+L S  
Sbjct: 300  IGQDLLDILAGNENVA----KLALAKLHKSEATCYDPLQIIQRHINDI-TRNKKKLQSPS 354

Query: 89   VSPSKD--LMQFYRVLVTPSKVYFIGPEL 9
             S  +D  LM  +R LVTPSKVYF+GPEL
Sbjct: 355  SSKLEDHNLMNCHRALVTPSKVYFLGPEL 383


>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
            gi|548853371|gb|ERN11375.1| hypothetical protein
            AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score =  199 bits (507), Expect = 2e-48
 Identities = 125/387 (32%), Positives = 201/387 (51%), Gaps = 4/387 (1%)
 Frame = -2

Query: 1154 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 975
            TV +   P+   A  + +FL+SI G G+V+  +I+  ++   S    IVQF     A  I
Sbjct: 77   TVQVSGFPQGTCAEAVKKFLESITGFGTVYHLKIRIHKSKPNSRVFAIVQFTTSKSAEVI 136

Query: 974  CNRSTKG-GLIIEGYHLDLKLRDKDHIHRP--CYSVSGGV-LSAGNMVSESALSVLWSAK 807
             + + +   L     ++ ++  + D +  P   Y V   + L  GN +SE + ++LWS  
Sbjct: 137  YSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEESFAILWSNT 196

Query: 806  DCNAEFSFQGQKISFYVVHGREEYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIF 627
            +   EF F  +KI FY+ H   +YK++L  ++I            T  ++L++Q   RIF
Sbjct: 197  NVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEGTRYLVLQMQGAPRIF 256

Query: 626  QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCVFGQASLFCLDFANGRKHPAFM 447
            QK  L  S   Y    F + K+  D QW+R+ DF+ +C  GQ+S  CL   NG + P   
Sbjct: 257  QK-PLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRIPNIR 315

Query: 446  ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 267
            EN  +++ +     ++     S   HLVP V  PD + LPY I F++NSLV +G L  PT
Sbjct: 316  ENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKLPYKILFRVNSLVQNGFLVGPT 375

Query: 266  LTCEFFDVLTNHNYSPPHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIV 87
            L  EF+++L  +    P +  +L ++ +    CL+P +WLQ +  + +N  P++ +   +
Sbjct: 376  LDTEFYNLL--NGLPSPFVERSLEDISRLTNCCLEPAKWLQEQYKKYRNL-PRRPSPAAI 432

Query: 86   SPSKDLMQFYRVLVTPSKVYFIGPELN 6
            S    L+  +RV VTPSKVYF GPE+N
Sbjct: 433  SLEPGLVYVHRVQVTPSKVYFYGPEVN 459


>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
          Length = 1120

 Score =  195 bits (495), Expect = 4e-47
 Identities = 121/392 (30%), Positives = 210/392 (53%), Gaps = 5/392 (1%)
 Frame = -2

Query: 1169 RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPG 990
            +R+++TV + N+P+T +A +L +F +S +G+GSVF+C I +E  NWKS G   VQF+   
Sbjct: 5    KRVTATVRVSNIPQTAIAKQLFDFFESSIGKGSVFACDIFSEHKNWKSRGHGRVQFETSQ 64

Query: 989  LATKICNRSTKGGLIIEGYHLDLKLRDKDHIHRPC---YSVSGGVLSAGNMVSESALSVL 819
               +  + S +G L+ +G+ L L     D I RP    Y    G+L  G ++    + VL
Sbjct: 65   SKLQSLSLSEQGKLVFKGHQLILTSSFDDIIARPIELNYRFQKGILHTGILLENDYMEVL 124

Query: 818  WSAKDCNAEFSFQGQKISFYVVHGREE-YKIELRLDDISATSAYINEDTDTPCILLKLQT 642
             + ++       + + + F+V H + E Y++E++  DI  T     ED  T  +LLKL+ 
Sbjct: 125  ETWENVKTLIMPERKSLEFWVSHAKGECYRLEVQFGDIIETCECSLEDEKT-ALLLKLKH 183

Query: 641  GARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCVFGQASLFCLDFANGRK 462
              +++Q++S     S +  + +  C+ED +  W+RTTDFS     G +S  C +  +G  
Sbjct: 184  APKLYQRVSGPGVASKFSSDRYHVCEEDCEFLWVRTTDFSAMKSIGCSSSPCWEIEDGLL 243

Query: 461  HPAFMENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGI 282
                +  LP+      +L+++    +     LVP    P  + LPY+I F+LNSL+H   
Sbjct: 244  SSDLLSGLPYCNNDVMDLVLDEVGDIYSASELVPLASFPSDLKLPYEILFQLNSLIHTHK 303

Query: 281  LSAPTLTCEFFDVLTNHNYSPPHINIALSELFKSMTTCLQPNRWLQSRLYEL-KNTNPKQ 105
            +S   +  +  +VL+          + L ++ K  +TC +P  ++++RL+ L KN+  + 
Sbjct: 304  ISLGAVKTDLIEVLSKLELDT--AMMILQKMHKLQSTCFEPVPFIKTRLHVLGKNSKNQP 361

Query: 104  LNSLIVSPSKDLMQFYRVLVTPSKVYFIGPEL 9
             +S     ++++M  +RVLVTPSKVY +GPEL
Sbjct: 362  SSSYSRLVNQNMMSVHRVLVTPSKVYCLGPEL 393


>ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum]
          Length = 1119

 Score =  193 bits (490), Expect = 2e-46
 Identities = 119/391 (30%), Positives = 203/391 (51%), Gaps = 4/391 (1%)
 Frame = -2

Query: 1169 RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPG 990
            +R ++TV + N+P++ +A +L +F DS++G+GSVF+C I +E  NWKS G   VQF+   
Sbjct: 5    KRATATVRVSNIPQSAIAKDLFDFFDSLIGKGSVFACDIFSEHKNWKSRGHGRVQFETLQ 64

Query: 989  LATKICNRSTKGGLIIEGYHLDLKLRDKDHIHRPC---YSVSGGVLSAGNMVSESALSVL 819
                  + S +G L+ +G+ L L     D I RP         G+L  G +V    + VL
Sbjct: 65   DKLHCLSLSEQGNLLFKGHQLSLVSSFDDIIARPVEPKCRFQDGILHTGLLVKNDVMQVL 124

Query: 818  WSAKDCNAEFSFQGQKISFYVVHGREEYKIELRLDDISATSAYINEDTDTPCILLKLQTG 639
             + +D       + + + F+V H  E Y++E++  D+   +   + +     +LLKL+  
Sbjct: 125  ETWEDVKTLIMPERKCLEFWVSHAEECYRLEVQFGDV-VEATVCSLENQKSALLLKLKHA 183

Query: 638  ARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCVFGQASLFCLDFANGRKH 459
             +++Q++S     S +  + +  CKED +  W+RTTDFS     G +S  C +  +G   
Sbjct: 184  PKLYQRVSGPAVASKFSADRYHICKEDCEFLWVRTTDFSNIKSIGCSSSLCWETEDGWLS 243

Query: 458  PAFMENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGIL 279
               + +LP       +L ++    +      VP VR+P  + LPY+I F+LNSLV    +
Sbjct: 244  SDLLSSLPCCNKDVIDLDLDKVGDIYSGSEFVPLVRIPSDLKLPYEILFQLNSLVQTQKI 303

Query: 278  SAPTLTCEFFDVLTNHNYSPPHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLN 99
            S   +  +  +VL+          + L ++ K  +TC +P  ++++RL+ L   N  QL+
Sbjct: 304  SLGAVNPDLIEVLSKLELDT--AMMILQKMHKLQSTCFEPLTFIKTRLHVLGKNNKNQLS 361

Query: 98   SLIVS-PSKDLMQFYRVLVTPSKVYFIGPEL 9
            S      +  +M  +RVLVTPSK+Y +GPEL
Sbjct: 362  SSYSRLVNHSMMSVHRVLVTPSKIYCLGPEL 392


>ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis sativus]
            gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
            2 [Cucumis sativus]
          Length = 1117

 Score =  193 bits (490), Expect = 2e-46
 Identities = 120/386 (31%), Positives = 199/386 (51%), Gaps = 3/386 (0%)
 Frame = -2

Query: 1157 STVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATK 978
            ST+ + N+P + +A +L+ FL+S LG  SVF+ +I TER NWKS GS  VQF       K
Sbjct: 7    STLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKAK 66

Query: 977  ICNRSTKGGLIIEGYHLDLKLRDKDHIHRPCYSVS---GGVLSAGNMVSESALSVLWSAK 807
              + S +  L+    +L   L + D + RP ++ +    GVL  G M+ E  +SVL S +
Sbjct: 67   AMSLSVQNSLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMSVLESWE 126

Query: 806  DCNAEFSFQGQKISFYVVHGREEYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIF 627
               A    + ++I F++ H +E YK+E+  ++I  T+ +   +     +LLKL+   RI+
Sbjct: 127  GVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLKLKYAPRIY 186

Query: 626  QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCVFGQASLFCLDFANGRKHPAFM 447
            +K+S     S +    ++ C ED D  W+RTT+FS     GQ++ FC +     +     
Sbjct: 187  KKISGSNMASRFSSTRYRLCIEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASDIF 246

Query: 446  ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 267
               PF++  Q ++++E+         +VP ++   G  L Y++ ++LNSLVH   +S   
Sbjct: 247  SCFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQKISLSA 306

Query: 266  LTCEFFDVLTNHNYSPPHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIV 87
               +  D L   +     +N+ L  L +    C  P  +L+++L+  K        S   
Sbjct: 307  ANQDLIDFLCTLDIDTA-LNV-LQRLHQLKFVCYDPLSFLKTQLHVYKRNCKSLPPSSQK 364

Query: 86   SPSKDLMQFYRVLVTPSKVYFIGPEL 9
              S ++M  YRVLVTPS++Y +GPEL
Sbjct: 365  RLSNNVMNCYRVLVTPSRIYCLGPEL 390


>ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
          Length = 1120

 Score =  190 bits (483), Expect = 1e-45
 Identities = 118/391 (30%), Positives = 205/391 (52%), Gaps = 6/391 (1%)
 Frame = -2

Query: 1163 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLA 984
            +S TV + N+P++  A +L++FL+S LG  +VF+ +I ++  NWKS G   VQF+     
Sbjct: 8    LSHTVRVSNIPQSATAKDLLDFLESTLGSSTVFALEIFSDNPNWKSRGFGRVQFETLDAR 67

Query: 983  TKICNRSTKGGLIIEGYHLDLKLRDKDHIHRPCYSVSGGVLSAGNMVSESALSVLWSAKD 804
            ++  + S    L+   + L L   D D I RP + +  GVL AG M+S+  +SVL S + 
Sbjct: 68   SRALSLSQLNQLLFNRHFLRLSETDSDIIFRPQHRLQNGVLYAGFMLSDHRMSVLESWEG 127

Query: 803  CNAEFSFQGQKISFYVVHGREEYKIELRLDDISATSAY-INEDTDTPCILLKLQTGARIF 627
                   Q +++ F+V H  + Y++E   +DI  +  Y + ED     +LLK++ G RI+
Sbjct: 128  IAGWVLPQRKRLDFWVWHNGDCYRLEFLFEDILESHGYCLGEDARLNALLLKMKFGPRIY 187

Query: 626  QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCVFGQASLFCLDFANGRKHPAFM 447
            +K +  +  + +  + ++F KED +  W+RTTDFS     G ++ FC +           
Sbjct: 188  KKKTGTDVAANFRGDRYRFLKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLASDVF 247

Query: 446  ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 267
             + P ++    +L +E+   L      VP V+      LPY+  F+LNSLVH   +S  +
Sbjct: 248  TSFPLYKENLRDLALEDREELCSLTEAVPLVKHATQSKLPYEAVFQLNSLVHTQKISLAS 307

Query: 266  LTCEFFDVLTNHNYSPPHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIV 87
            +  E  D+L + +       +   +L K   TC +P ++++++L+ L N    +   L+ 
Sbjct: 308  VDDELIDLLADLDEETR--AVVFQKLHKMSFTCYEPLKFVKTQLHVLSN----KKKGLLQ 361

Query: 86   SP-----SKDLMQFYRVLVTPSKVYFIGPEL 9
            SP       ++M  +R L+TP+K+Y +GPEL
Sbjct: 362  SPQNRLTDSNIMSCHRALITPTKIYCLGPEL 392


>gb|ESW27397.1| hypothetical protein PHAVU_003G198500g [Phaseolus vulgaris]
          Length = 1119

 Score =  188 bits (478), Expect = 4e-45
 Identities = 118/387 (30%), Positives = 204/387 (52%), Gaps = 2/387 (0%)
 Frame = -2

Query: 1163 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLA 984
            +S TV + N+PR+  A +L+ F++S +G  +VF+ +I ++  NWKS G+  VQF+     
Sbjct: 8    LSHTVSVFNIPRSATAKDLLHFIESKVGSSTVFALEIFSDNVNWKSRGAGRVQFEALDAK 67

Query: 983  TKICNRSTKGGLIIEGYHLDLKLRDKDHIHRPCYSVSGGVLSAGNMVSESALSVLWSAKD 804
            ++  + S    L+I  + L L    +D I RP + +  GVL AG M+S+  +SVL S + 
Sbjct: 68   SRALSLSQLQQLLIHSHFLRLSDTSEDIIFRPLHRLQNGVLYAGLMLSDDRMSVLESWEG 127

Query: 803  CNAEFSFQGQKISFYVVHGREEYKIELRLDDISATSAY-INEDTDTPCILLKLQTGARIF 627
                   Q +K+ F V+H  + Y++E+  +DI  +  Y +  +     +LLKL+ G +I+
Sbjct: 128  VAGLVVPQRRKLDFLVLHDGDCYRVEIFFEDILESHGYCLGAEGKLNALLLKLKFGPKIY 187

Query: 626  QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCVFGQASLFCLDFANGRKHPAFM 447
            +K    +  + +  + + FCKED +  W+RTTDFS     G ++ FC + A  +      
Sbjct: 188  KKKMGPDVATKFRNDRYHFCKEDSEFLWVRTTDFSALKSIGHSTSFCWEIAEEQLASDVF 247

Query: 446  ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 267
             +LP ++    +L++E+          VP V+      LPY+  F+LNSLVH   +S  +
Sbjct: 248  TSLPLYKENLRDLVLEDGEEFCSSTEAVPLVKCASQSKLPYEALFQLNSLVHTQKISLAS 307

Query: 266  LTCEFFDVLTNHNYSPPHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQ-LNSLI 90
            +  E  D+L           +   +L +   TC  P ++++++L+ L N    Q L+S  
Sbjct: 308  VDDELIDLL--GGLDEEIRAVIFQKLHQMGFTCYDPLKFVKTQLHVLSNKKRSQPLSSQK 365

Query: 89   VSPSKDLMQFYRVLVTPSKVYFIGPEL 9
                 ++M  +R LVTP+K+Y +GPEL
Sbjct: 366  RLIDNNIMSCHRALVTPTKIYCLGPEL 392


>ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum lycopersicum]
          Length = 1119

 Score =  186 bits (473), Expect = 1e-44
 Identities = 117/391 (29%), Positives = 199/391 (50%), Gaps = 4/391 (1%)
 Frame = -2

Query: 1169 RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPG 990
            +R ++TV + N+P++ +A +L  F DS++G+GSVF+C I +E  NWKS G   VQF+   
Sbjct: 5    KRATATVRVSNIPQSAIAKDLSNFFDSLIGKGSVFACDIHSEHKNWKSRGHGRVQFETLQ 64

Query: 989  LATKICNRSTKGGLIIEGYHLDLKLRDKDHIHRPC---YSVSGGVLSAGNMVSESALSVL 819
                  + + +G L+ +G+ L L     D I RP         G+L  G +V +  + VL
Sbjct: 65   DKLHCLSLAEQGNLLFKGHQLSLVSSFDDIITRPVEPKCRFQAGILHTGLLVEKDVMQVL 124

Query: 818  WSAKDCNAEFSFQGQKISFYVVHGREEYKIELRLDDISATSAYINEDTDTPCILLKLQTG 639
             + +D       + + + F+V H  E Y++E++  D++      + +     +LLKL+  
Sbjct: 125  ETWEDVKTLIMPERKCLEFWVSHAEECYRLEVQFGDVT-EGTLCSVENQKSALLLKLKHA 183

Query: 638  ARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCVFGQASLFCLDFANGRKH 459
             +++Q++S     S +  + +  CKED +  WIRTTDFS     G +S  C +  +G   
Sbjct: 184  PKLYQRVSGPAVASKFSADRYHICKEDCEFLWIRTTDFSNIKSIGCSSSLCWETEDGWLS 243

Query: 458  PAFMENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGIL 279
                 +LP       +L ++    +      VP VR+P  + LPY+I F+LNSLV    +
Sbjct: 244  SDLFSSLPCCNQDVIDLDLDKVGDIYSGSEFVPLVRIPSDLKLPYEILFQLNSLVQTQKI 303

Query: 278  SAPTLTCEFFDVLTNHNYSPPHINIALSELFKSMTTCLQPNRWLQSRLYEL-KNTNPKQL 102
            S   +     +VL+          + L ++ K  + C  P  ++++RL+ L KN   +  
Sbjct: 304  SLGAINPNLIEVLSKLELDT--AMMILQKMHKLQSICFDPLLFIKTRLHVLGKNNKNRPS 361

Query: 101  NSLIVSPSKDLMQFYRVLVTPSKVYFIGPEL 9
            +S     +  +M  +RVLVTPSK+Y +GPEL
Sbjct: 362  SSYSRLVNHSMMSVHRVLVTPSKIYCLGPEL 392


>ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X1 [Glycine
            max]
          Length = 1121

 Score =  184 bits (468), Expect = 5e-44
 Identities = 113/389 (29%), Positives = 203/389 (52%), Gaps = 4/389 (1%)
 Frame = -2

Query: 1163 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLA 984
            +S+TV + N+P++  A +L++FL+S +G  +VF+ +I ++  NWKS G   VQF+     
Sbjct: 9    LSNTVRVSNIPQSATAKDLLDFLESTVGPSTVFALEIFSDNPNWKSRGFGRVQFETLDAR 68

Query: 983  TKICNRSTKGGLIIEGYHLDLKLRDKDHIHRPCYSVSGGVLSAGNMVSESALSVLWSAKD 804
            ++  + S    L+   + L L   D D I RP + +  GVL AG ++S+  +SVL S + 
Sbjct: 69   SRALSLSQLNHLLFHRHFLRLSETDADIIFRPQHRLHNGVLYAGFVLSDHRMSVLESWEG 128

Query: 803  CNAEFSFQGQKISFYVVHGREEYKIELRLDDISATSAY-INEDTDTPCILLKLQTGARIF 627
                     +++ F+V H  + Y++E   +DI  +  Y + ED     +LLK++ G RI+
Sbjct: 129  VAGWVLPLRKRLDFWVWHNGDCYRLEFLFEDILESHGYCLGEDAKLNALLLKMKFGPRIY 188

Query: 626  QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCVFGQASLFCLDFANGRKHPAFM 447
            +K +  +  + +  + ++FCKED +  W+RTTDFS     G ++ FC +           
Sbjct: 189  KKKTGADVAAKFRGDRYRFCKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLALDVF 248

Query: 446  ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 267
            ++ P ++    +L +E+          VP V+      LPY+  F+LNSLVH   +S  +
Sbjct: 249  KSFPLYKENLRDLALEDGEEFCSSTEAVPLVKRASQSKLPYEALFQLNSLVHTQKISLAS 308

Query: 266  LTCEFFDVLTNHNYSPPHINIALSELFKSMTTCLQPNRWLQSRLYELKNTN---PKQLNS 96
            +  E  D+L   +       +   +L K   TC +P ++++++L+ L N     P+    
Sbjct: 309  VDDELIDLLAGLDEETR--AVIFLKLHKMSFTCYEPLKFVKTQLHVLSNKKKGLPQSSQK 366

Query: 95   LIVSPSKDLMQFYRVLVTPSKVYFIGPEL 9
             +     ++M  +R L+TP+K+Y +GPEL
Sbjct: 367  RLT--DSNIMSCHRALITPTKIYCLGPEL 393


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  184 bits (466), Expect = 9e-44
 Identities = 131/394 (33%), Positives = 194/394 (49%), Gaps = 8/394 (2%)
 Frame = -2

Query: 1163 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCI---VQFDNP 993
            M  T+ +  +P  V A+E+ EFL+   GEG++ + +IK      KSG S     VQF + 
Sbjct: 1    MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQP----KSGVSMTHAKVQFTSL 56

Query: 992  GLATKICNRSTKGGLIIEGYHLDLKLRDKDHIHRP---CYSVSGGVLSAGNMVSESALSV 822
             LA  I + + +  L   G +L  +  D D I +P    +S+    L  G  +S     V
Sbjct: 57   RLAELIISLAKQ--LWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCV 114

Query: 821  LWSAKDCNAEFSFQGQKISFYVVHGREEYKIELRLDDISATSAYINEDTDTPCILLKLQT 642
            LW A + + +F F  +K  F++ HG EEYK+EL  ++I           +T  +L++L  
Sbjct: 115  LWKAINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLD 174

Query: 641  GARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCVFGQASLFCLDFANGRK 462
              +I++K       SA       + KE  D QW+R  DF+ +C  GQ+S  CL+  +G +
Sbjct: 175  APQIYEK-----DVSA-----LSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQ 224

Query: 461  HPAFMENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGI 282
             P F EN   ++    + ++E+    S   HLVP V  P G  LP+ I FK+N+LV +G 
Sbjct: 225  LPNFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGC 284

Query: 281  LSAPTLTCEFFDVLTNHNYSPPHINIALSELFKSMTTCLQPNRWL--QSRLYELKNTNPK 108
            LS PTL   FF  +     +   I  AL +L+     C +P RWL  Q R Y  K     
Sbjct: 285  LSGPTLDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYISKQV--- 341

Query: 107  QLNSLIVSPSKDLMQFYRVLVTPSKVYFIGPELN 6
               S  +S    L+   RV +TP KVYF GPE+N
Sbjct: 342  -AGSPAISLDTGLVYVRRVQITPCKVYFCGPEVN 374


>gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]
          Length = 1115

 Score =  183 bits (465), Expect = 1e-43
 Identities = 113/388 (29%), Positives = 201/388 (51%), Gaps = 5/388 (1%)
 Frame = -2

Query: 1154 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERT-NWKSGGSCIVQFDNPGLATK 978
            T+ +   P TV A  + + L+ I+G G+VF+ +++  +  +  S    IVQF +   A+ 
Sbjct: 5    TLQVSGFPSTVNADHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEAHASL 64

Query: 977  ICNRSTKGGLIIEGYHLDLKLRDKDHIHRP---CYSVSGGVLSAGNMVSESALSVLWSAK 807
            + N + +  L    ++L  +  ++D + RP    +++ G  L  G ++ E  LSVLWS  
Sbjct: 65   VLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNLQGAKLHFGCLLKERVLSVLWSGT 124

Query: 806  DCNAEFSFQGQKISFYVVHGREEYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIF 627
            + + EF F  ++I F +++  ++YK+EL  + I     +         +L+++Q   +I+
Sbjct: 125  NVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQVQAAPKIY 184

Query: 626  QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCVFGQASLFCLDFANGRKHPAFM 447
            ++ ++R S S Y    F + ++D D QW RTTDF+ +   GQ+ + CL+  +    P   
Sbjct: 185  EQ-NIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSYILCLELPHICYLPNIR 243

Query: 446  ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 267
            E   ++E+  D   ++     S     VP V+      +PY+I FK+N LV +G LS PT
Sbjct: 244  EYFVYYEVHNDIFNLQPGYSYSSNTCFVPVVKSHYFTDVPYEILFKINHLVQNGTLSGPT 303

Query: 266  LTCEFFDVLTNHNYSPPHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIV 87
            L   F+ +++        I  AL ++     TCL P  WL  +  +++ +  + L S  +
Sbjct: 304  LDDNFYRLVSPGYERIDRIKRALEKMSYLKKTCLNPTNWLSEQYKKMRRS--RVLTSPNI 361

Query: 86   SPSKD-LMQFYRVLVTPSKVYFIGPELN 6
            +   D L+  YRV +TP+KVYF GPE+N
Sbjct: 362  TLDDDGLVYVYRVQITPAKVYFYGPEIN 389


>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
            gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
            [Medicago truncatula]
          Length = 1308

 Score =  182 bits (463), Expect = 2e-43
 Identities = 116/391 (29%), Positives = 203/391 (51%), Gaps = 9/391 (2%)
 Frame = -2

Query: 1154 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 975
            TV + N+P T  A++L+ +L++ +G  SVF+ +I ++ TNWKS G   VQF+     +K 
Sbjct: 10   TVRVTNIPHTATANDLLRYLETTVGRSSVFALEIFSDYTNWKSRGVGRVQFETLEAKSKA 69

Query: 974  CNRSTKGGLIIEGYHLDLKLRDKDHIHRPCYS---VSGGVLSAGNMVSESALSVLWSAKD 804
               +    L++  + L L     D I RP      ++ G L AG  +    +SVL S + 
Sbjct: 70   LTLAENKKLLLSSHFLCLDASSDDIIPRPALPRNRINNGALYAGFPIGPDCMSVLQSWEG 129

Query: 803  CNAEFSFQGQKISFYVVHGREEYKIELRLDDISATSAYINEDTDTP-CILLKLQTGARIF 627
                   + Q++ F+V HG + +K+E+  ++I     Y +++   P  +LLKL+ G RI+
Sbjct: 130  VRGWVMPERQRLDFWVTHGDQCFKLEIPFENILECDGYCSDEGSKPNALLLKLRYGPRIY 189

Query: 626  QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCVFGQASLFCLDFANGRKHPAFM 447
            QK++     + +  + ++FCKE+ +  W+RTTDFS     G ++ F  +           
Sbjct: 190  QKMAGPNVAAKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHSTSFFWEIVEESFDSDVF 249

Query: 446  ENLPFF-EMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAP 270
             + P + E ++D  L + +   SP    VP V+      LPY+  F+LNSLVH   +S  
Sbjct: 250  RSFPLYRENLKDLSLEDGEKFCSP-TETVPLVKCRLDSKLPYESLFQLNSLVHTQKISLA 308

Query: 269  TLTCEFFDVLTNHNYSPPHINIALSELFKSMTTCLQPNRWLQSRLYEL----KNTNPKQL 102
            ++  E  D+L + +       +   +L K  +TC +P ++++++L+ L    K+  P Q 
Sbjct: 309  SVNDELIDLLASLDAETK--AVIFQKLHKMNSTCYEPLKYVRTQLHVLSIKKKSVLPSQQ 366

Query: 101  NSLIVSPSKDLMQFYRVLVTPSKVYFIGPEL 9
              L+     ++M  +R L+TPSK+Y +GPEL
Sbjct: 367  KRLV---DNNIMSCHRALITPSKIYCLGPEL 394


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  181 bits (460), Expect = 5e-43
 Identities = 123/394 (31%), Positives = 200/394 (50%), Gaps = 8/394 (2%)
 Frame = -2

Query: 1163 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGS--CIVQFDNPG 990
            M  T+ +   P  V A  + +FL+S  G G+V++ +++T +   K  G    IVQF    
Sbjct: 1    MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPK---KGVGRLYAIVQFTTKE 57

Query: 989  LATKICNRSTKGGLIIEGY-HLDLKLRDKDHIHRP---CYSVSGGVLSAGNMVSESALSV 822
             A  I + + +   +  G  +L+ +  ++D + RP    +++    L  G  +S    +V
Sbjct: 58   AADTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAV 117

Query: 821  LWSAKDCNAEFSFQGQKISFYVVHGREEYKIELRLDDISATSAYINEDTDTPCILLKLQT 642
            LW   +    F F  +KI+F + H  EEY++EL  ++I     +      T  +L++L  
Sbjct: 118  LWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLG 177

Query: 641  GARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCVFGQASLFCLDFANGRK 462
              RIFQK  +R     Y    F F KE  D QW+RTTDF+ +   GQ++  C++     +
Sbjct: 178  APRIFQK-GIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLE 236

Query: 461  HPAFMENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGI 282
             P F EN  +++  +D  ++E     S    LVP V  PDG+ LPY+I FK+N LV +G 
Sbjct: 237  LPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGC 296

Query: 281  LSAPTLTCEFFDVLTNHN--YSPPHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPK 108
            ++ P L   F+ ++  +    S   I  AL +L+     C +P+RWL  + Y    T+  
Sbjct: 297  VAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQ-YRKYMTSRS 355

Query: 107  QLNSLIVSPSKDLMQFYRVLVTPSKVYFIGPELN 6
            + +S  +S    L+  +RV VTPS+VYF GPE+N
Sbjct: 356  KPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEIN 389


>gb|EMT27792.1| Putative RNA-dependent RNA polymerase 1 [Aegilops tauschii]
          Length = 1144

 Score =  181 bits (460), Expect = 5e-43
 Identities = 118/404 (29%), Positives = 200/404 (49%), Gaps = 21/404 (5%)
 Frame = -2

Query: 1154 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERT-NWKSGGSCIVQFDNPGLATK 978
            T+ +   P TV A  + + L+ I+G G+VF+ +++  +  +  S    IVQF +   A+ 
Sbjct: 5    TIQVSGFPSTVNADHVKDLLEQIVGTGNVFAIKLRPPKNISANSKSFAIVQFQSEAHASL 64

Query: 977  ICNRSTKGGLIIEGYHLDLKLRDKDHIHRP---CYSVSGGVLSAGNMVSESALSVLWSAK 807
            + N + +  L     HL  +  ++D + RP    +++    L  G ++ E ALSVLWS  
Sbjct: 65   VLNAARRNALRSGSNHLKARYAERDIVPRPRTTIFNLQDATLHFGCLLREKALSVLWSGT 124

Query: 806  DCNAEFSFQGQKISFYVVHGREEYKIELRLDDISATSAYINEDTDTPCILLKL------- 648
            + + EF F  ++I F +++  ++YK+EL  + I     +         +L++L       
Sbjct: 125  NVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQLRDFDNLS 184

Query: 647  ---------QTGARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCVFGQAS 495
                     Q   +I+++ ++R S S Y    F + ++D D QW RTTDF+ +   GQ+ 
Sbjct: 185  WRNVSVSQVQAAPKIYEQ-NIRRSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSY 243

Query: 494  LFCLDFANGRKHPAFMENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIA 315
            + CL+  +    P   E   ++E+  D   ++     S     VP V+      +PY+I 
Sbjct: 244  ILCLELPHICYLPNIREYFVYYEVHDDVFHLQRGHSYSSNTCFVPVVKSHHFTDVPYEIL 303

Query: 314  FKLNSLVHHGILSAPTLTCEFFDVLTNHNYSPPHINIALSELFKSMTTCLQPNRWLQSRL 135
            FK+N LV +G LS PTL   F+ +++       HI  AL ++     TCL P +WL S  
Sbjct: 304  FKINHLVQNGTLSGPTLDDNFYRLVSPGYECIDHIKRALEKMSYLKKTCLNPTKWL-SEQ 362

Query: 134  YELKNTNPKQLNSLIVSPSKD-LMQFYRVLVTPSKVYFIGPELN 6
            Y+ K  +   L    ++   D L+  YRV +TP+KVYF GPE+N
Sbjct: 363  YKKKRRSRYMLKLPNITLDDDGLVYVYRVQITPAKVYFYGPEIN 406


>gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]
          Length = 1115

 Score =  181 bits (460), Expect = 5e-43
 Identities = 113/388 (29%), Positives = 200/388 (51%), Gaps = 5/388 (1%)
 Frame = -2

Query: 1154 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERT-NWKSGGSCIVQFDNPGLATK 978
            T+ +   P TV A  + + L+ I+G G+VF+ +++  +  +  S    IVQF +   A+ 
Sbjct: 5    TLQVSGFPSTVNADHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEAHASL 64

Query: 977  ICNRSTKGGLIIEGYHLDLKLRDKDHIHRP---CYSVSGGVLSAGNMVSESALSVLWSAK 807
            + N + +  L    ++L  +  ++D + RP    +++ G  L  G ++ E  LSVLWS  
Sbjct: 65   VLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNLQGAKLHFGCLLKERVLSVLWSGT 124

Query: 806  DCNAEFSFQGQKISFYVVHGREEYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIF 627
            D + EF F  ++I F +++  ++YK+EL  + I     +         +L+++Q   +I+
Sbjct: 125  DVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQVQAAPKIY 184

Query: 626  QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCVFGQASLFCLDFANGRKHPAFM 447
            ++ ++R S S Y    F + ++D D QW RTTDF+ +   GQ+ +  L+  +    P   
Sbjct: 185  EQ-NIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSYILSLELPHICYLPNIR 243

Query: 446  ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 267
            E   ++E+  D   ++     S     VP V+      +PY+I FK+N LV +G LS PT
Sbjct: 244  EYFVYYEVHNDIFNLQPGYSYSSNTCFVPVVKSHYFTDVPYEILFKINHLVQNGTLSGPT 303

Query: 266  LTCEFFDVLTNHNYSPPHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIV 87
            L   F+ +++        I  AL ++     TCL P  WL  +  +++ +  + L S  +
Sbjct: 304  LDDNFYRLVSPGYERIDRIKRALEKMSYLKKTCLNPTNWLSEQYKKMRRS--RVLTSPNI 361

Query: 86   SPSKD-LMQFYRVLVTPSKVYFIGPELN 6
            +   D L+  YRV +TP+KVYF GPE+N
Sbjct: 362  TLDDDGLVYVYRVQITPAKVYFYGPEIN 389


>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
          Length = 1122

 Score =  181 bits (459), Expect = 6e-43
 Identities = 113/390 (28%), Positives = 199/390 (51%), Gaps = 8/390 (2%)
 Frame = -2

Query: 1154 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 975
            TV + N+P++  A +L+ FL+S +G  SVF+ +I ++ +NWKS GS  VQF+     +K 
Sbjct: 10   TVRVFNIPQSATAKDLLHFLESTVGPSSVFALEIFSDHSNWKSRGSGRVQFETFEAKSKA 69

Query: 974  CNRSTKGGLIIEGYHLDLKLRDKDHIHRP---CYSVSGGVLSAGNMVSESALSVLWSAKD 804
             + S+   L+   + L L     D + RP   C  +  G L AG  +    +SV+ S + 
Sbjct: 70   LSLSSNDKLLFNSHFLRLAASSDDIVPRPPLPCNRLHNGTLHAGFPLGPDRMSVIQSWEG 129

Query: 803  CNAEFSFQGQKISFYVVHGREEYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIFQ 624
                   +  ++ F+V H  + +K+E+  ++I     + ++ +    +LLKL+ G RI+Q
Sbjct: 130  VKGWVMPERNRLDFWVTHHDQCFKLEIPFENILECDGFSSDGSKPNALLLKLKYGPRIYQ 189

Query: 623  KLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCVFGQASLFCLDFANGRKHPAFME 444
            ++      + +  + ++FCKED    W+RTTDFS     G ++ FC +            
Sbjct: 190  RMEGPNVSAKFKADRYRFCKEDFAFMWVRTTDFSRLKSIGHSTSFCWEIEEESSDSDVFR 249

Query: 443  NLPFF-EMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 267
            + P + E ++D  L + +   SP    VP V+      LPY+  F+LNSLVH   +S  +
Sbjct: 250  SFPLYRENLKDLSLEDGEEFCSP-TETVPLVKCRLDTKLPYEALFQLNSLVHTQKISLAS 308

Query: 266  LTCEFFDVLTNHNYSPPHINIALSELFKSMTTCLQPNRWLQSRLYEL----KNTNPKQLN 99
            +  E  D++ + +       +   +L K  +TC +P R+++++L+ L    K+  P    
Sbjct: 309  VDDELIDLIASLDDETK--AVIFQKLHKMSSTCYEPLRFVKTQLHVLSIKKKSLRPSSQK 366

Query: 98   SLIVSPSKDLMQFYRVLVTPSKVYFIGPEL 9
             L      ++M  +R L+TPSK+Y +GPEL
Sbjct: 367  RL---ADNNIMSCHRALITPSKIYCLGPEL 393


>ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Populus trichocarpa]
            gi|222868578|gb|EEF05709.1| hypothetical protein
            POPTR_0015s08500g [Populus trichocarpa]
          Length = 1110

 Score =  180 bits (456), Expect = 1e-42
 Identities = 118/385 (30%), Positives = 193/385 (50%), Gaps = 4/385 (1%)
 Frame = -2

Query: 1154 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 975
            +V + N+P+T+ A E++++L + LG+ SVF+ +I T R NW S G   VQF +  +  + 
Sbjct: 9    SVRVTNIPQTITAKEILQYLVAQLGKDSVFAIEISTVRKNWNSRGFGRVQFSSLEVKHEA 68

Query: 974  CNRSTKGGLIIEGYHLDLKLRDKDHIHRPCYS---VSGGVLSAGNMVSESALSVLWSAKD 804
             + S K  L+++  +L L     D I RP      +  GVL  G M  E+ L VL   + 
Sbjct: 69   LSLSLKNKLVLKSQNLKLSETYDDIIPRPVKDQNRMENGVLYVGFMKKETTLCVLEYWEG 128

Query: 803  CNAEFSFQGQKISFYVVHGRE-EYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIF 627
                F  + ++I F++  G+E  YK+ +  +DI     Y  +      ++LKL+ G RI+
Sbjct: 129  VRGWFMPERRRIEFWIRVGQEFRYKLVVEFEDILEAVGYPLDGDKVNAVVLKLRYGPRIY 188

Query: 626  QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCVFGQASLFCLDFANGRKHPAFM 447
            QK+S     S +  N + +CKED D  W+RTTD S     GQ++ FC +   G +     
Sbjct: 189  QKISGPGIASKFSTNRYFYCKEDFDFLWVRTTDISAIKSIGQSTSFCWEIGEGLEASDTF 248

Query: 446  ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 267
             N P+++   + L +E+          VP +R      L Y++ F+LNSLVH   +S   
Sbjct: 249  RNFPYYQEDMNRLDLEDGEEFCSASETVPLIRCGSD-KLAYEVLFQLNSLVHTQKISLAA 307

Query: 266  LTCEFFDVLTNHNYSPPHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIV 87
            +  +   +L N   +     I L +L K   TC  P  +++  L E  ++ PK L     
Sbjct: 308  VDSDLIKILRNLTVNT--AIIILQKLHKLKMTCYDPLSFVKQSLRESLSSPPKSLT---- 361

Query: 86   SPSKDLMQFYRVLVTPSKVYFIGPE 12
                ++M  +R L+TPSK++ +GPE
Sbjct: 362  --ENNIMSCHRALITPSKIFCLGPE 384


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max]
          Length = 1125

 Score =  179 bits (453), Expect = 3e-42
 Identities = 118/393 (30%), Positives = 192/393 (48%), Gaps = 7/393 (1%)
 Frame = -2

Query: 1163 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLA 984
            M  T+ +   P +V   ++  F++   GEG+VF+ +++  +       + I+QF     A
Sbjct: 1    MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKGRVPRAFA-IIQFTTANSA 59

Query: 983  TKICNRSTK--GGLIIEGYHLDLKLRDKDHIHRP---CYSVSGGVLSAGNMVSESALSVL 819
            T + +R+      L     +L  +  ++D + RP    +S+    LS G  +S+   SVL
Sbjct: 60   TSMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVL 119

Query: 818  WSAKDCNAEFSFQGQKISFYVVHGREEYKIELRLDDISATSAYINEDTDTPCILLKLQTG 639
            W  +D    F    +K+ F   H   +YK+EL  ++I     +   +  T  +L++L   
Sbjct: 120  WKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLGA 179

Query: 638  ARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCVFGQASLFCLDFANGRKH 459
             R+F+   +  S + +    F F K+  D QWIR  DF+     GQ+S  CL+  NGR+ 
Sbjct: 180  PRVFEN-DVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQL 238

Query: 458  PAFMENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGIL 279
            P F EN  ++E  + +  ++  V  S    LVP V  P GV + YDI FK+NSLV H  L
Sbjct: 239  PNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACL 298

Query: 278  SAPTLTCEFFDVLTNHNYSPPHINIALSELFKSMTTCLQPNRWL--QSRLYELKNTNPKQ 105
            + P L  +F+ ++         I  AL +++ S   C +P +WL  Q + Y     +P+ 
Sbjct: 299  AGPALDGDFYRLVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPR- 357

Query: 104  LNSLIVSPSKDLMQFYRVLVTPSKVYFIGPELN 6
              S  +S    L+   RV +TP KVYF GPE+N
Sbjct: 358  --SPAISLDTGLVYVRRVQITPCKVYFCGPEMN 388


>ref|XP_004953848.1| PREDICTED: probable RNA-dependent RNA polymerase 1-like [Setaria
            italica]
          Length = 1123

 Score =  178 bits (452), Expect = 4e-42
 Identities = 116/395 (29%), Positives = 197/395 (49%), Gaps = 9/395 (2%)
 Frame = -2

Query: 1163 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERT-NWKSGGSCIVQFDNPGL 987
            M  T+ +     T  A  + +FL+ I G G+V++ +++  R     S    IVQF     
Sbjct: 1    MGRTIQVSGFALTDSAEYVKDFLERIAGAGTVYALKLRHPRNITATSKAFAIVQFQTQEC 60

Query: 986  ATKICNRSTKGGLIIEGYHLDLKLRDKDHIHRP---CYSVSGGVLSAGNMVSESALSVLW 816
            A+ + N + +  L     +L  +  D+D + RP    +S+    L  G +V E+ L  L+
Sbjct: 61   ASLVENAAQRNALRSRCIYLKARPADRDIVPRPRIAMFSLDAAALHLGCLVKENILYTLF 120

Query: 815  SAKDCNAEFSFQGQKISFYVVHGREEYKIELRLDDI-----SATSAYINEDTDTPCILLK 651
            S ++ + +F F  +KI FY+ +   +YK+EL  + I         AY+++   T  +L +
Sbjct: 121  SVRNISVQFGFDMKKIYFYLSYNLIKYKLELSYESIWEMQLHRPPAYLSQ---TKFLLFQ 177

Query: 650  LQTGARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCVFGQASLFCLDFAN 471
            +Q   +I++ L  R S   Y    F + ++D D QW RT DF+ +   GQ+S+ CL+   
Sbjct: 178  VQAAPKIYELLP-RRSGLMYEDPFFNWFRDDTDEQWTRTIDFTPSASIGQSSILCLEVPQ 236

Query: 470  GRKHPAFMENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVH 291
              + P   +   +++    +   +     S     VP V+ PD + +PY+I FK+N LV 
Sbjct: 237  QCELPNIADYFVYYKEHNLDFECQKGYSYSCGNSFVPIVKSPDYIEVPYEILFKINHLVQ 296

Query: 290  HGILSAPTLTCEFFDVLTNHNYSPPHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNP 111
            +G LS PTL   FF +++  +    HI  AL ++    +TCL P  WL  +  +++ +  
Sbjct: 297  NGTLSGPTLDDNFFCLVSPKHVPIDHIKRALLKMSYLKSTCLNPTNWLALQYSKIRKSRY 356

Query: 110  KQLNSLIVSPSKDLMQFYRVLVTPSKVYFIGPELN 6
                S  +S    L+  +RV VTP+KVYF GPE+N
Sbjct: 357  ALQRSSGISLDDGLVYVHRVQVTPAKVYFYGPEIN 391


>gb|EMS66194.1| RNA-dependent RNA polymerase 1 [Triticum urartu]
          Length = 1252

 Score =  178 bits (451), Expect = 5e-42
 Identities = 117/411 (28%), Positives = 199/411 (48%), Gaps = 28/411 (6%)
 Frame = -2

Query: 1154 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERT-NWKSGGSCIVQFDNPGLATK 978
            T+ +   P TV A  + + L+ I+G G+VF+ +++  +  +  S    IVQF +   A+ 
Sbjct: 5    TIQVSGFPSTVNADHVKDLLEKIVGTGNVFAIKLRPPKNISANSKSFAIVQFQSEAHASL 64

Query: 977  ICNRSTKGGLIIEGYHLDLKLRDKDHIHRP---CYSVSGGVLSAGNMVSESALSVLWSAK 807
            + N + +  L     HL  +  ++D + RP    +++    L  G ++ E  LSVLWS  
Sbjct: 65   VLNAARRNALRSGSNHLKARYAERDIVPRPRTTIFNLQDATLHFGCLLREKVLSVLWSGT 124

Query: 806  DCNAEFSFQGQKISFYVVHGREEYKIELRLDDISATSAYINEDTDTPCILLKL------- 648
            + + EF F  ++I F +++  ++YK+EL  + I     +         +L++L       
Sbjct: 125  NVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQLFLFIESS 184

Query: 647  ----------------QTGARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSEN 516
                            Q   +I+++ ++R S S Y    F + ++D D QW RTTDF+ +
Sbjct: 185  EIFVNLSWRNVSVSQVQAAPKIYEQ-NIRRSGSMYDDPLFNYSRDDTDDQWTRTTDFTPS 243

Query: 515  CVFGQASLFCLDFANGRKHPAFMENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGV 336
               GQ+ + CL+  +    P   E   ++E+  D   ++     S     VP V+     
Sbjct: 244  ASIGQSYILCLELPHICYLPNIREYFVYYEVHDDVFHLQRGHSYSSNTCFVPVVKSHHFT 303

Query: 335  TLPYDIAFKLNSLVHHGILSAPTLTCEFFDVLTNHNYSPPHINIALSELFKSMTTCLQPN 156
             +PY+I FK+N LV +G LS PTL   F+ +++       HI  AL ++     TCL P 
Sbjct: 304  DVPYEILFKINHLVQNGTLSGPTLDDNFYRLVSPGYECIDHIKRALEKMSYLKKTCLNPT 363

Query: 155  RWLQSRLYELKNTNPKQLNSLIVSPSKD-LMQFYRVLVTPSKVYFIGPELN 6
            +WL S  Y+    +   L S  ++   D L+  YRV +TP+KVYF GPE+N
Sbjct: 364  KWL-SEQYKKNRRSRYMLKSPNITLDDDGLVYVYRVQITPAKVYFYGPEIN 413