BLASTX nr result
ID: Ephedra26_contig00022390
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00022390
(508 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc... 144 9e-33
gb|AFP55546.1| gag-pol polyprotein [Rosa rugosa] 142 5e-32
gb|AFP55578.1| copia-type polyprotein [Rosa rugosa] 142 6e-32
emb|CAN71427.1| hypothetical protein VITISV_027864 [Vitis vinifera] 141 8e-32
gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana] 141 8e-32
gb|EEC84282.1| hypothetical protein OsI_30754 [Oryza sativa Indi... 139 3e-31
ref|NP_001060895.1| Os08g0125300 [Oryza sativa Japonica Group] g... 139 5e-31
ref|XP_004152030.1| PREDICTED: pentatricopeptide repeat-containi... 138 7e-31
gb|ABH07409.1| putative pol polyprotein [Brassica oleracea var. ... 138 7e-31
gb|EOY19734.1| Copia-like retrotransposable element, putative [T... 138 9e-31
gb|AGW47867.1| polyprotein [Phaseolus vulgaris] 137 1e-30
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi... 137 2e-30
emb|CBL94154.1| putative polyprotein (retrotrasposon protein) [M... 137 2e-30
gb|ABA94321.1| retrotransposon protein, putative, unclassified [... 136 3e-30
emb|CAN64613.1| hypothetical protein VITISV_030850 [Vitis vinifera] 136 3e-30
gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group... 136 3e-30
gb|ABA95797.1| retrotransposon protein, putative, unclassified [... 135 4e-30
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz... 135 6e-30
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 135 6e-30
gb|AGH20678.1| reverse transcriptase, partial [Olimarabidopsis c... 135 7e-30
>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 900
Score = 144 bits (364), Expect = 9e-33
Identities = 71/171 (41%), Positives = 107/171 (62%), Gaps = 2/171 (1%)
Frame = +2
Query: 2 NKGWDVFHFDVKSAFLHGNLDEEVYMAQPPGYSQGEE--FYCKLKRSLYGLK*APRTWYK 175
++GW + DV++AFLHG LDEEVYM QPPG+ + F CKL ++LYGLK APR WY
Sbjct: 483 SQGWSLRQLDVQNAFLHGYLDEEVYMRQPPGFEDARQPHFLCKLDKALYGLKQAPRAWYS 542
Query: 176 RLTNFLKKKGFVMSKQDPNLWYLTKGKHERPVILAFHVDDIIITGDDAKIIKEFKDELGR 355
RL+ L++ GF SK D +L++ KG H+ V++ +VDDII+ + + +L +
Sbjct: 543 RLSKKLQELGFSSSKADTSLFFYNKGHHKMFVLV--YVDDIIVASSSSPAVNALLKDLEK 600
Query: 356 EFEITDLG*AKYYLGFQIERTENTLKLHQQSYAQQILEFMEL*NSHPKQIP 508
+F + DLG Y+LG +++RT TL L Q+ Y ++LE + + + P P
Sbjct: 601 DFALKDLGDLHYFLGIEVKRTPQTLLLSQERYTTELLERVNMTSCKPVSTP 651
>gb|AFP55546.1| gag-pol polyprotein [Rosa rugosa]
Length = 1180
Score = 142 bits (358), Expect = 5e-32
Identities = 72/157 (45%), Positives = 101/157 (64%), Gaps = 2/157 (1%)
Frame = +2
Query: 2 NKGWDVFHFDVKSAFLHGNLDEEVYMAQPPGY--SQGEEFYCKLKRSLYGLK*APRTWYK 175
N W + FDVK+AFLHG+L EEVYM PPGY S GE+ CKLK+SLYGLK +PR W+
Sbjct: 769 NLDWPLQQFDVKNAFLHGDLHEEVYMDLPPGYGTSTGEQVVCKLKKSLYGLKQSPRAWFG 828
Query: 176 RLTNFLKKKGFVMSKQDPNLWYLTKGKHERPVILAFHVDDIIITGDDAKIIKEFKDELGR 355
R T F+KK G+ S D L+ K + + L +VDD+++TGDD + I+ + +L
Sbjct: 829 RFTKFMKKIGYRQSNSDHTLF--LKHRCGKVTALIIYVDDMVVTGDDIEEIQRLQGQLSS 886
Query: 356 EFEITDLG*AKYYLGFQIERTENTLKLHQQSYAQQIL 466
EFE+ DLG KY+LG ++ R ++ + L Q+ Y +L
Sbjct: 887 EFEMKDLGNLKYFLGIEVARGKDCIVLSQRKYVLDLL 923
>gb|AFP55578.1| copia-type polyprotein [Rosa rugosa]
Length = 1187
Score = 142 bits (357), Expect = 6e-32
Identities = 72/170 (42%), Positives = 109/170 (64%), Gaps = 2/170 (1%)
Frame = +2
Query: 5 KGWDVFHFDVKSAFLHGNLDEEVYMAQPPGYSQG--EEFYCKLKRSLYGLK*APRTWYKR 178
K W +F DVKSAFLHG L+E+VY+ QP G+ Q EE KLK++LYGLK APR WY R
Sbjct: 776 KNWTIFQLDVKSAFLHGELNEDVYIEQPQGFEQKGEEEKVYKLKKALYGLKQAPRAWYSR 835
Query: 179 LTNFLKKKGFVMSKQDPNLWYLTKGKHERPVILAFHVDDIIITGDDAKIIKEFKDELGRE 358
+ + K+GF + L+ +G+ + +I++ +VDD I TG+D +I++FK + E
Sbjct: 836 IEGYFVKEGFERCSYEHTLFVKIEGEGKM-LIVSLYVDDQIFTGNDMSMIEKFKSSMMHE 894
Query: 359 FEITDLG*AKYYLGFQIERTENTLKLHQQSYAQQILEFMEL*NSHPKQIP 508
FE+TDLG KY+LG +I ++ + L Q YA++++E + S+P + P
Sbjct: 895 FEMTDLGEMKYFLGVEIRQSAEGIHLCQSKYAREVIERFGMGKSNPVRNP 944
>emb|CAN71427.1| hypothetical protein VITISV_027864 [Vitis vinifera]
Length = 1300
Score = 141 bits (356), Expect = 8e-32
Identities = 73/171 (42%), Positives = 108/171 (63%), Gaps = 2/171 (1%)
Frame = +2
Query: 2 NKGWDVFHFDVKSAFLHGNLDEEVYMAQPPGY-SQGE-EFYCKLKRSLYGLK*APRTWYK 175
NK WD++ DVK+AFLHG LD E+YM QP G+ SQG E+ CKL+++LYGLK APR WY
Sbjct: 884 NKDWDLWQMDVKNAFLHGELDREIYMNQPMGFQSQGHPEYVCKLRKALYGLKQAPRAWYG 943
Query: 176 RLTNFLKKKGFVMSKQDPNLWYLTKGKHERPVILAFHVDDIIITGDDAKIIKEFKDELGR 355
++ FL + G+ ++ D +L+ G + I+ +VDD+IITGDD + I K+ L
Sbjct: 944 KIAEFLTQSGYSVTPADSSLFVKANGG--KLAIVLVYVDDLIITGDDVEEIFRTKENLSV 1001
Query: 356 EFEITDLG*AKYYLGFQIERTENTLKLHQQSYAQQILEFMEL*NSHPKQIP 508
FE+ +LG K++LG +++RT + L QQ YA+ +L+ + P P
Sbjct: 1002 RFEMKELGQLKHFLGLEVDRTNEGIFLCQQKYAKDLLKKFGMLECKPISTP 1052
>gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]
Length = 1453
Score = 141 bits (356), Expect = 8e-32
Identities = 74/172 (43%), Positives = 107/172 (62%), Gaps = 4/172 (2%)
Frame = +2
Query: 5 KGWDVFHFDVKSAFLHGNLDEEVYMAQPPGYSQGEE--FYCKLKRSLYGLK*APRTWYKR 178
KGW++ DV +AFLHG L E VYM QPPG+ E+ + C+L ++LYGLK APR W+
Sbjct: 986 KGWNIKQLDVSNAFLHGELKEPVYMLQPPGFVDQEKPSYVCRLTKALYGLKQAPRAWFDT 1045
Query: 179 LTNFLKKKGFVMSKQDPNLWYLTKGKHERPVILAFHVDDIIITGDDAKIIKEFKDELGRE 358
++N+L GF SK DP+L+ T K+ + ++L +VDDI++TG D +++E L +
Sbjct: 1046 ISNYLLDFGFSCSKSDPSLF--TYHKNGKTLVLLLYVDDILLTGSDHNLLQELLMSLNKR 1103
Query: 359 FEITDLG*AKYYLGFQIERTENTLKLHQQSYAQQILE--FMEL*NSHPKQIP 508
F + DLG Y+LG +IE + L LHQ +YA+ IL M NS P +P
Sbjct: 1104 FSMKDLGAPSYFLGVEIESSPEGLFLHQTAYAKDILHQAAMSNCNSMPTPLP 1155
>gb|EEC84282.1| hypothetical protein OsI_30754 [Oryza sativa Indica Group]
Length = 1427
Score = 139 bits (351), Expect = 3e-31
Identities = 73/171 (42%), Positives = 113/171 (66%), Gaps = 2/171 (1%)
Frame = +2
Query: 2 NKGWDVFHFDVKSAFLHGNLDEEVYMAQPPGY-SQGEE-FYCKLKRSLYGLK*APRTWYK 175
++ W+V H DVKSAFL+G+L+EEVY+AQP G+ +GEE +L ++LYGL+ APR W
Sbjct: 1014 DRRWEVHHLDVKSAFLNGDLEEEVYVAQPEGFVKRGEEHLVLRLSKALYGLRQAPRAWNT 1073
Query: 176 RLTNFLKKKGFVMSKQDPNLWYLTKGKHERPVILAFHVDDIIITGDDAKIIKEFKDELGR 355
RL LK+ GF Q+ ++ T+GK + VI+ +VDD+I+TG++ + I FK ++
Sbjct: 1074 RLDKCLKELGFARCTQEQAVY--TRGKGQAGVIVGVYVDDLIVTGENPQEIAMFKQQMMG 1131
Query: 356 EFEITDLG*AKYYLGFQIERTENTLKLHQQSYAQQILEFMEL*NSHPKQIP 508
EFE++DLG YYLG ++ + EN + + Q +YA++IL + +P IP
Sbjct: 1132 EFEMSDLGLLSYYLGIEVIQGENGIAIKQAAYAKKILSQFGMQGCNPTSIP 1182
>ref|NP_001060895.1| Os08g0125300 [Oryza sativa Japonica Group]
gi|113622864|dbj|BAF22809.1| Os08g0125300 [Oryza sativa
Japonica Group] gi|215701150|dbj|BAG92574.1| unnamed
protein product [Oryza sativa Japonica Group]
Length = 1427
Score = 139 bits (349), Expect = 5e-31
Identities = 73/171 (42%), Positives = 112/171 (65%), Gaps = 2/171 (1%)
Frame = +2
Query: 2 NKGWDVFHFDVKSAFLHGNLDEEVYMAQPPGY-SQGEE-FYCKLKRSLYGLK*APRTWYK 175
++ W+V H DVKSAFL+G+L+EEVY+AQP G+ +GEE +L ++LYGL+ APR W
Sbjct: 1014 DRRWEVHHLDVKSAFLNGDLEEEVYVAQPEGFVKRGEEHLVLRLSKALYGLRQAPRAWNT 1073
Query: 176 RLTNFLKKKGFVMSKQDPNLWYLTKGKHERPVILAFHVDDIIITGDDAKIIKEFKDELGR 355
RL LK+ GF Q+ ++ T+GK + VI+ +VDD+I+TG++ I FK ++
Sbjct: 1074 RLDKCLKELGFARCTQEQAVY--TRGKGQAGVIVGVYVDDLIVTGENPHEIAMFKQQMMG 1131
Query: 356 EFEITDLG*AKYYLGFQIERTENTLKLHQQSYAQQILEFMEL*NSHPKQIP 508
EFE++DLG YYLG ++ + EN + + Q +YA++IL + +P IP
Sbjct: 1132 EFEMSDLGLLSYYLGIEVIQGENGIAIKQAAYAKKILSQFGMQGCNPTSIP 1182
>ref|XP_004152030.1| PREDICTED: pentatricopeptide repeat-containing protein At4g04790,
mitochondrial-like [Cucumis sativus]
Length = 1295
Score = 138 bits (348), Expect = 7e-31
Identities = 69/170 (40%), Positives = 104/170 (61%), Gaps = 1/170 (0%)
Frame = +2
Query: 2 NKGWDVFHFDVKSAFLHGNLDEEVYMAQPPGY-SQGEEFYCKLKRSLYGLK*APRTWYKR 178
NK W ++ DVK+AFL+G+L EEVYM+ PPG+ +Q + CKL++S+YGLK +PR W+ R
Sbjct: 567 NKDWPLYQLDVKNAFLNGDLVEEVYMSPPPGFEAQFGQCACKLQKSIYGLKQSPRAWFDR 626
Query: 179 LTNFLKKKGFVMSKQDPNLWYLTKGKHERPVILAFHVDDIIITGDDAKIIKEFKDELGRE 358
T F+K +G+ D L + K + V+L +VDDI++TGDD I + K +G E
Sbjct: 627 FTTFVKSQGYRQGHSDHTL-FTKVSKTGKIVVLIVYVDDIVLTGDDQAEISQLKQRMGDE 685
Query: 359 FEITDLG*AKYYLGFQIERTENTLKLHQQSYAQQILEFMEL*NSHPKQIP 508
FEI DLG KY+LG ++ R++ + + Q+ Y +L + P P
Sbjct: 686 FEIKDLGNLKYFLGMEVARSKEGISVSQRKYILDLLTETGMLGCRPTDTP 735
>gb|ABH07409.1| putative pol polyprotein [Brassica oleracea var. botrytis]
Length = 1239
Score = 138 bits (348), Expect = 7e-31
Identities = 69/170 (40%), Positives = 113/170 (66%), Gaps = 2/170 (1%)
Frame = +2
Query: 5 KGWDVFHFDVKSAFLHGNLDEEVYMAQPPGYSQ-GEEFYC-KLKRSLYGLK*APRTWYKR 178
KGW++ H DVK+AFLHG L+EEVY+ QP G+ + GEE KL ++LYGL+ APR W +
Sbjct: 820 KGWELHHLDVKTAFLHGELNEEVYVTQPEGFEKKGEEHKVFKLSKALYGLRQAPRAWNTK 879
Query: 179 LTNFLKKKGFVMSKQDPNLWYLTKGKHERPVILAFHVDDIIITGDDAKIIKEFKDELGRE 358
L LK F ++ +++ +G ++ +I+A +VDD+ +TG+ KIIKEFK + +
Sbjct: 880 LDRVLKSLRFKKCMKESSVYRREEG--DKLLIIAIYVDDLFVTGNSTKIIKEFKTAMSHK 937
Query: 359 FEITDLG*AKYYLGFQIERTENTLKLHQQSYAQQILEFMEL*NSHPKQIP 508
FE++DLG YYLG +++++ + + Q++YA++I+E + + +P IP
Sbjct: 938 FEMSDLGLLTYYLGIEVKQSTRGITIKQEAYAKRIMEESGMADCNPNCIP 987
>gb|EOY19734.1| Copia-like retrotransposable element, putative [Theobroma cacao]
Length = 1207
Score = 138 bits (347), Expect = 9e-31
Identities = 68/161 (42%), Positives = 108/161 (67%), Gaps = 2/161 (1%)
Frame = +2
Query: 11 WDVFHFDVKSAFLHGNLDEEVYMAQPPGYSQG--EEFYCKLKRSLYGLK*APRTWYKRLT 184
W ++H DVKSAFL+G L+E++++ QP G+ + E CKLK++LYGLK APR WY R+
Sbjct: 797 WKLWHLDVKSAFLNGLLEEDIFIEQPKGFIEPGMENRICKLKKALYGLKQAPRAWYARVD 856
Query: 185 NFLKKKGFVMSKQDPNLWYLTKGKHERPVILAFHVDDIIITGDDAKIIKEFKDELGREFE 364
N+L KGF MS+ P L Y+ + VI++ +VDDI++T + +++ +FK E+ EF+
Sbjct: 857 NYLCNKGFHMSESKPTL-YVCCSSAGKQVIVSIYVDDILVTSLNTELLLKFKKEMMEEFK 915
Query: 365 ITDLG*AKYYLGFQIERTENTLKLHQQSYAQQILEFMEL*N 487
+T+LG Y+LG + + E + LHQQ YA ++L+ ++ N
Sbjct: 916 MTNLGLITYFLGLEFVQAEKFIILHQQKYATELLKKFKMQN 956
>gb|AGW47867.1| polyprotein [Phaseolus vulgaris]
Length = 1471
Score = 137 bits (346), Expect = 1e-30
Identities = 72/168 (42%), Positives = 109/168 (64%), Gaps = 2/168 (1%)
Frame = +2
Query: 11 WDVFHFDVKSAFLHGNLDEEVYMAQPPGYSQ-GEEF-YCKLKRSLYGLK*APRTWYKRLT 184
W +F DVKSAFL+G L+EEVY+ QPPGY + GEE KLK++LYGLK APR W R+
Sbjct: 939 WPIFQMDVKSAFLNGVLEEEVYIEQPPGYMKIGEEKKVLKLKKALYGLKQAPRAWNTRID 998
Query: 185 NFLKKKGFVMSKQDPNLWYLTKGKHERPVILAFHVDDIIITGDDAKIIKEFKDELGREFE 364
+ K+ GF + L+ G + + +A +VDD+I G++ +I+EFK + REFE
Sbjct: 999 TYFKENGFKQCPYEHALYAKNNGGNM--IFVALYVDDLIFMGNNNDMIEEFKGTMRREFE 1056
Query: 365 ITDLG*AKYYLGFQIERTENTLKLHQQSYAQQILEFMEL*NSHPKQIP 508
+TDLG K++LG ++ + E + + Q+ YA++IL+ ++ N +P IP
Sbjct: 1057 MTDLGLMKFFLGLEVRQKETGIFVSQEKYAKEILKKYKMENCNPVSIP 1104
>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1499
Score = 137 bits (344), Expect = 2e-30
Identities = 69/157 (43%), Positives = 107/157 (68%), Gaps = 2/157 (1%)
Frame = +2
Query: 5 KGWDVFHFDVKSAFLHGNLDEEVYMAQPPGYSQGEEF--YCKLKRSLYGLK*APRTWYKR 178
+GW +F DVKSAFL+G+L+EEVY+ QPPG+ + +E KL ++LYGLK APR WY R
Sbjct: 941 QGWKLFQMDVKSAFLNGDLEEEVYIEQPPGFIEEKEEGKVLKLHKALYGLKQAPRAWYGR 1000
Query: 179 LTNFLKKKGFVMSKQDPNLWYLTKGKHERPVILAFHVDDIIITGDDAKIIKEFKDELGRE 358
+ + K GF S D +Y+ K E ++++ +VDDII+TG + K I+ FK+E+ E
Sbjct: 1001 IDGYFIKNGFERSINDA-AFYVKKTSKEI-LVVSLYVDDIIVTGSNVKEIERFKEEMKNE 1058
Query: 359 FEITDLG*AKYYLGFQIERTENTLKLHQQSYAQQILE 469
FE+TDLG Y+LG ++ + + + L Q++YA+++L+
Sbjct: 1059 FEMTDLGELSYFLGMEVNQDDEGIFLSQENYAKKLLK 1095
>emb|CBL94154.1| putative polyprotein (retrotrasposon protein) [Malus domestica]
Length = 1390
Score = 137 bits (344), Expect = 2e-30
Identities = 72/170 (42%), Positives = 100/170 (58%), Gaps = 1/170 (0%)
Frame = +2
Query: 2 NKGWDVFHFDVKSAFLHGNLDEEVYMAQPPGYSQGEEF-YCKLKRSLYGLK*APRTWYKR 178
N W + FDVK+AFLHGNL+EEVYM PPGYS G C+L++SLYGLK +PR W+ R
Sbjct: 980 NMDWPLKQFDVKNAFLHGNLEEEVYMDFPPGYSVGRNTGVCRLRKSLYGLKQSPRAWFDR 1039
Query: 179 LTNFLKKKGFVMSKQDPNLWYLTKGKHERPVILAFHVDDIIITGDDAKIIKEFKDELGRE 358
T +K+ G+ S D L+ K + E+ L +VDD+IITGDD I + + L E
Sbjct: 1040 FTQVMKRIGYYQSHSDHTLF--VKRRQEKVTALIIYVDDMIITGDDFDEISKLQSNLAAE 1097
Query: 359 FEITDLG*AKYYLGFQIERTENTLKLHQQSYAQQILEFMEL*NSHPKQIP 508
FE+ LG KY+LG ++ R+ + L Q+ Y +L+ + P P
Sbjct: 1098 FEMKSLGDLKYFLGVEVARSLKGIFLSQRKYVLDLLKETGMLGCKPVDTP 1147
>gb|ABA94321.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1133
Score = 136 bits (343), Expect = 3e-30
Identities = 69/157 (43%), Positives = 97/157 (61%), Gaps = 2/157 (1%)
Frame = +2
Query: 2 NKGWDVFHFDVKSAFLHGNLDEEVYMAQPPGYSQGEEF--YCKLKRSLYGLK*APRTWYK 175
N GW + DVK+AFLHG+L EEVYM PPG+ + CKLK+SLYGLK +PR W+
Sbjct: 842 NFGWPLHQLDVKNAFLHGDLHEEVYMEIPPGFGNSQTVGKVCKLKKSLYGLKQSPRAWFD 901
Query: 176 RLTNFLKKKGFVMSKQDPNLWYLTKGKHERPVILAFHVDDIIITGDDAKIIKEFKDELGR 355
R + + G+ D ++Y +G H ILA +VDDI+ITGDD + I+ K+ LG+
Sbjct: 902 RFRHAVCDMGYSQCNGDHTIFYKHRGTHI--TILAVYVDDIVITGDDVEEIRCLKERLGK 959
Query: 356 EFEITDLG*AKYYLGFQIERTENTLKLHQQSYAQQIL 466
FE+ DLG +Y+LG +I R+ + L Q+ Y +L
Sbjct: 960 AFEVKDLGPLRYFLGIEIARSSKGIVLSQRKYVLDLL 996
>emb|CAN64613.1| hypothetical protein VITISV_030850 [Vitis vinifera]
Length = 598
Score = 136 bits (342), Expect = 3e-30
Identities = 71/171 (41%), Positives = 105/171 (61%), Gaps = 2/171 (1%)
Frame = +2
Query: 2 NKGWDVFHFDVKSAFLHGNLDEEVYMAQPPGYSQGEE--FYCKLKRSLYGLK*APRTWYK 175
N W + DVK+AFLHG+L+EE+YM PPGY+ E C+L+R+LYGLK +PR W+
Sbjct: 222 NLDWPLHQLDVKNAFLHGDLEEEIYMDIPPGYTTTSEAKIACRLQRALYGLKQSPRAWFG 281
Query: 176 RLTNFLKKKGFVMSKQDPNLWYLTKGKHERPVILAFHVDDIIITGDDAKIIKEFKDELGR 355
RL++ ++K GF S D L+ K + + L +VDD+IITGDD + I + +D+L
Sbjct: 282 RLSSAMRKYGFQQSNSDHTLFL--KHRLGKITALIVYVDDMIITGDDVEEISKLQDQLST 339
Query: 356 EFEITDLG*AKYYLGFQIERTENTLKLHQQSYAQQILEFMEL*NSHPKQIP 508
EFE+ +LG KY+LG ++ R+ + L Q+ Y +L + L P IP
Sbjct: 340 EFEMKNLGGLKYFLGIEVARSRQGIFLSQRKYILDLLAEVGLLECKPSDIP 390
>gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108711651|gb|ABF99446.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1393
Score = 136 bits (342), Expect = 3e-30
Identities = 69/157 (43%), Positives = 97/157 (61%), Gaps = 2/157 (1%)
Frame = +2
Query: 2 NKGWDVFHFDVKSAFLHGNLDEEVYMAQPPGYSQGEEF--YCKLKRSLYGLK*APRTWYK 175
N GW + DVK+AFLHG+L EEVYM PPG+ + CKLK+SLYGLK +PR W+
Sbjct: 983 NFGWPLHQLDVKNAFLHGDLHEEVYMEIPPGFGNSQTVGKVCKLKKSLYGLKQSPRAWFD 1042
Query: 176 RLTNFLKKKGFVMSKQDPNLWYLTKGKHERPVILAFHVDDIIITGDDAKIIKEFKDELGR 355
R + + G+ D ++Y +G H ILA +VDDI+ITGDD + I+ K+ LG+
Sbjct: 1043 RFRHAVCDMGYSQCNGDHTVFYKHRGTHI--TILAVYVDDIVITGDDVEEIRCLKERLGK 1100
Query: 356 EFEITDLG*AKYYLGFQIERTENTLKLHQQSYAQQIL 466
FE+ DLG +Y+LG +I R+ + L Q+ Y +L
Sbjct: 1101 AFEVKDLGPLRYFLGIEIARSSKGIVLSQRKYVLDLL 1137
>gb|ABA95797.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1588
Score = 135 bits (341), Expect = 4e-30
Identities = 69/157 (43%), Positives = 94/157 (59%), Gaps = 2/157 (1%)
Frame = +2
Query: 2 NKGWDVFHFDVKSAFLHGNLDEEVYMAQPPGYSQGEEF--YCKLKRSLYGLK*APRTWYK 175
N GW + DVK+AFLHG+L EEVYM PPG+ + C+LK+SLYGLK +PR W+
Sbjct: 1178 NFGWPLHQLDVKNAFLHGDLQEEVYMEIPPGFGNSQTVGKVCRLKKSLYGLKQSPRAWFD 1237
Query: 176 RLTNFLKKKGFVMSKQDPNLWYLTKGKHERPVILAFHVDDIIITGDDAKIIKEFKDELGR 355
R L G+ D ++Y +G H ILA +VDDI+ITGDD + IK K LG
Sbjct: 1238 RFRRALCNMGYSQCNGDHTVFYRHRGAHI--TILAVYVDDIVITGDDVEEIKCLKQRLGE 1295
Query: 356 EFEITDLG*AKYYLGFQIERTENTLKLHQQSYAQQIL 466
FE+ DLG +Y+LG ++ R+ + L Q+ Y +L
Sbjct: 1296 AFEVKDLGPLRYFLGIEVARSSKGIVLSQRKYVLDLL 1332
>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
Group]
Length = 1399
Score = 135 bits (340), Expect = 6e-30
Identities = 69/171 (40%), Positives = 100/171 (58%), Gaps = 2/171 (1%)
Frame = +2
Query: 2 NKGWDVFHFDVKSAFLHGNLDEEVYMAQPPGYSQGE--EFYCKLKRSLYGLK*APRTWYK 175
++GW + DVK+AFLHG L+EEVYM QPPGY + + CKL ++LYGLK APR WY
Sbjct: 984 SRGWSLRQLDVKNAFLHGVLEEEVYMKQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYS 1043
Query: 176 RLTNFLKKKGFVMSKQDPNLWYLTKGKHERPVILAFHVDDIIITGDDAKIIKEFKDELGR 355
RL+ L + GFV SK D +L++ KG + + L +VDDII+ EL +
Sbjct: 1044 RLSTKLSELGFVPSKADTSLFFYKKG--QVSIFLLIYVDDIIVASSVPDATSTLLQELSK 1101
Query: 356 EFEITDLG*AKYYLGFQIERTENTLKLHQQSYAQQILEFMEL*NSHPKQIP 508
+F + DLG Y+LG ++ + ++ L L Q+ YA +L + + P P
Sbjct: 1102 DFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTP 1152
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1501
Score = 135 bits (340), Expect = 6e-30
Identities = 69/167 (41%), Positives = 106/167 (63%), Gaps = 1/167 (0%)
Frame = +2
Query: 11 WDVFHFDVKSAFLHGNLDEEVYMAQPPGYSQGE-EFYCKLKRSLYGLK*APRTWYKRLTN 187
W+V+ DV +AFLHG+L+EEVYM PPG+ + C+L++SLYGLK APR W+K+L++
Sbjct: 1094 WEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSD 1153
Query: 188 FLKKKGFVMSKQDPNLWYLTKGKHERPVILAFHVDDIIITGDDAKIIKEFKDELGREFEI 367
L + GFV S +D +L+ T+ E V++ +VDD++I G+D ++++FKD L R F +
Sbjct: 1154 SLLRFGFVQSYEDYSLFSYTRNNIELRVLI--YVDDLLICGNDGYMLQKFKDYLSRCFSM 1211
Query: 368 TDLG*AKYYLGFQIERTENTLKLHQQSYAQQILEFMEL*NSHPKQIP 508
DLG KY+LG ++ R + L Q+ YA ++ S P P
Sbjct: 1212 KDLGKLKYFLGIEVSRGPEGIFLSQRKYALDVIADSGNLGSRPAHTP 1258
>gb|AGH20678.1| reverse transcriptase, partial [Olimarabidopsis cabulica]
Length = 315
Score = 135 bits (339), Expect = 7e-30
Identities = 69/168 (41%), Positives = 111/168 (66%), Gaps = 2/168 (1%)
Frame = +2
Query: 11 WDVFHFDVKSAFLHGNLDEEVYMAQPPGYS-QGEEF-YCKLKRSLYGLK*APRTWYKRLT 184
W + DVKSAFL+G+L+EEVY+ QP GY +GEE KLK++LYGLK APR W R+
Sbjct: 101 WKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEAKVLKLKKALYGLKQAPRAWNTRID 160
Query: 185 NFLKKKGFVMSKQDPNLWYLTKGKHERPVILAFHVDDIIITGDDAKIIKEFKDELGREFE 364
+ K+K F+ + L+ K + + +I +VDD+I TG++ + +EFK E+ +EFE
Sbjct: 161 KYFKEKDFIKCPYEHALYI--KIQKDDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFE 218
Query: 365 ITDLG*AKYYLGFQIERTENTLKLHQQSYAQQILEFMEL*NSHPKQIP 508
+TD+G YYLG ++++ +N + + Q+ YA+++L+ +L +S+P P
Sbjct: 219 MTDIGLMYYYLGIEVKQEDNEIFITQEGYAKEVLKKFKLDDSNPVSTP 266