BLASTX nr result
ID: Ephedra26_contig00022353
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00022353
(828 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 266 5e-69
gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus no... 253 8e-65
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 249 1e-63
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 249 1e-63
ref|XP_006645606.1| PREDICTED: probable RNA-dependent RNA polyme... 248 1e-63
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 246 7e-63
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 246 9e-63
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 246 9e-63
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme... 243 5e-62
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 243 5e-62
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 243 5e-62
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme... 243 6e-62
ref|NP_001042304.1| Os01g0198000 [Oryza sativa Japonica Group] g... 240 5e-61
sp|Q5QMN4.2|RDR4_ORYSJ RecName: Full=Probable RNA-dependent RNA ... 240 5e-61
gb|EEE54053.1| hypothetical protein OsJ_00746 [Oryza sativa Japo... 240 5e-61
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr... 239 7e-61
sp|Q5QMN5.2|RDR3_ORYSJ RecName: Full=Probable RNA-dependent RNA ... 238 2e-60
gb|EEE54052.1| hypothetical protein OsJ_00745 [Oryza sativa Japo... 238 2e-60
ref|XP_006645607.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA... 238 3e-60
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme... 237 3e-60
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 266 bits (681), Expect = 5e-69
Identities = 137/273 (50%), Positives = 181/273 (66%)
Frame = -3
Query: 823 LLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVN 644
LL++GGVP S F L AL+D+ ++ A + Q + D+ V RM+ G+P+
Sbjct: 523 LLSHGGVPKSCFMFLIQAALDDVQNVRYSKKLALTAAVKYQEISDNLLVARMIFCGLPLE 582
Query: 643 EPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDV 464
EP+LQ RL + + K +++GKV L NSYY+MGTADP+G+LK NEVCIILDHGQ+SG V
Sbjct: 583 EPYLQHRLSILMKEERKGLKEGKVLLPNSYYLMGTADPTGKLKGNEVCIILDHGQISGKV 642
Query: 463 LVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFDGDLYW 284
LVYR+PG HFGD+H++ ATY++++ EIVG+AKF IFFSTQG RS ADEIA GDFDGD+YW
Sbjct: 643 LVYRHPGLHFGDIHVFTATYIEDLVEIVGNAKFAIFFSTQGPRSAADEIANGDFDGDMYW 702
Query: 283 VCTNKTVLKDYKLQPSWXXXXXXXXXXXXXPTDFSSEDLEQYLFDQFLTCRFSPSNTTGL 104
+ TN +L +K P W P ++S ++LE LFD FL RF PS
Sbjct: 703 ISTNPELLHYFKAGPPWERSSSEKPPPQRKPIEYSPDELETELFDLFLESRFHPSIAKCA 762
Query: 103 AANSWMAYMDRLLTPIVAKSKEADLLTEKMLLL 5
AA+SW+ YMDRLLT ++E L +KML L
Sbjct: 763 AADSWLVYMDRLLTLGDECAEEKGCLHQKMLKL 795
>gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus notabilis]
Length = 521
Score = 253 bits (645), Expect = 8e-65
Identities = 124/255 (48%), Positives = 168/255 (65%)
Frame = -3
Query: 826 ALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPV 647
ALL++GGVPD +FK L W AL + D+ A ++ +DDD TV RM+ +GIP+
Sbjct: 34 ALLSHGGVPDDYFKGLLWNALRESHGAFNDKRTAIRVAINRGSIDDDSTVARMILSGIPL 93
Query: 646 NEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGD 467
EP+LQ RL + + K++R G++ +D+ +Y+MGTADP+G+L+ +EVCI+L +GQVSG
Sbjct: 94 EEPYLQHRLFVLVKEERKSLRGGRLHVDDCFYLMGTADPTGKLEHDEVCIVLANGQVSGK 153
Query: 466 VLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFDGDLY 287
VLVYRNPG HFGD+H+ KATY++E+E VG+AK+ IFFS +G RS ADE+AGGDFDGD++
Sbjct: 154 VLVYRNPGLHFGDIHVLKATYIEEMESFVGNAKYAIFFSKKGPRSIADEMAGGDFDGDMF 213
Query: 286 WVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXPTDFSSEDLEQYLFDQFLTCRFSPSNTTG 107
WV N +LK +K W P D S +LE L FLT RF PS
Sbjct: 214 WVSRNPELLKYFKPSDPWIKKSSTGKVKSKQPIDLSDRELEDELIKLFLTVRFKPSFAKS 273
Query: 106 LAANSWMAYMDRLLT 62
A+ W+A MDR LT
Sbjct: 274 EASEGWLALMDRFLT 288
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 249 bits (635), Expect = 1e-63
Identities = 130/275 (47%), Positives = 182/275 (66%)
Frame = -3
Query: 826 ALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPV 647
ALL+YGGVP+ FF + ALED ++ A ++ N G DD V M+ GIP+
Sbjct: 408 ALLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVAL-NYGDMDDNIVATMIGCGIPL 466
Query: 646 NEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGD 467
EP+LQ RL + + K+++ GK+ + SYY+MGTADP+G L+ +EVCIILD GQ+SG+
Sbjct: 467 EEPYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGE 526
Query: 466 VLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFDGDLY 287
VL+YRNPG HFGD+H+ KATYV+E+E+ VG+AK+ IFF +G RS ADE++GGDFDGD++
Sbjct: 527 VLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMF 586
Query: 286 WVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXPTDFSSEDLEQYLFDQFLTCRFSPSNTTG 107
+V N +L+ +K W P++FS E+LE LF FL RF PS+T G
Sbjct: 587 FVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSSTVG 646
Query: 106 LAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 2
+AA+SW+A MDRLLT ++E + E + LL+
Sbjct: 647 VAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLI 681
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 249 bits (635), Expect = 1e-63
Identities = 130/275 (47%), Positives = 182/275 (66%)
Frame = -3
Query: 826 ALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPV 647
ALL+YGGVP+ FF + ALED ++ A ++ N G DD V M+ GIP+
Sbjct: 430 ALLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVAL-NYGDMDDNIVATMIGCGIPL 488
Query: 646 NEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGD 467
EP+LQ RL + + K+++ GK+ + SYY+MGTADP+G L+ +EVCIILD GQ+SG+
Sbjct: 489 EEPYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGE 548
Query: 466 VLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFDGDLY 287
VL+YRNPG HFGD+H+ KATYV+E+E+ VG+AK+ IFF +G RS ADE++GGDFDGD++
Sbjct: 549 VLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMF 608
Query: 286 WVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXPTDFSSEDLEQYLFDQFLTCRFSPSNTTG 107
+V N +L+ +K W P++FS E+LE LF FL RF PS+T G
Sbjct: 609 FVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSSTVG 668
Query: 106 LAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 2
+AA+SW+A MDRLLT ++E + E + LL+
Sbjct: 669 VAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLI 703
>ref|XP_006645606.1| PREDICTED: probable RNA-dependent RNA polymerase 4-like [Oryza
brachyantha]
Length = 1004
Score = 248 bits (634), Expect = 1e-63
Identities = 130/277 (46%), Positives = 180/277 (64%), Gaps = 2/277 (0%)
Frame = -3
Query: 826 ALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPV 647
ALL+YGGVP+ FF L A+ED D A + ++D + RM+ AGIP+
Sbjct: 523 ALLHYGGVPEEFFMELLQNAIEDAENARFDYGDALNIAFSYADMEDSMSA-RMILAGIPL 581
Query: 646 NEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGD 467
+E +LQ RL + K I++GK+ +DN YY+MGTADP+G L PNEVC+ILD+GQ+SGD
Sbjct: 582 DELYLQSRLTFMAKQERKGIKEGKIPIDNCYYLMGTADPTGILAPNEVCVILDNGQLSGD 641
Query: 466 VLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFDGDLY 287
VLVY++PG HFGD+H+ KATY+ +EE+VG +K+ I F T G+RS ADE+A DFDGD++
Sbjct: 642 VLVYKHPGLHFGDIHVLKATYIPGLEEVVGCSKYVILFPTTGQRSLADEMANSDFDGDIF 701
Query: 286 WVCTNKTVLKDYKLQPS--WXXXXXXXXXXXXXPTDFSSEDLEQYLFDQFLTCRFSPSNT 113
W+ N +L+ +K + W P DF+ +LE+ LF +FL RF+PS
Sbjct: 702 WISINPKLLEHFKPSKAWEWEQAITPKEAKQMGPQDFNESELERLLFHEFLKARFAPSYA 761
Query: 112 TGLAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 2
A+N+W+ YMDRLLT V +S E +L+ EKML LV
Sbjct: 762 LATASNNWLVYMDRLLTDPVDES-EKELIKEKMLKLV 797
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 246 bits (628), Expect = 7e-63
Identities = 128/255 (50%), Positives = 170/255 (66%)
Frame = -3
Query: 826 ALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPV 647
ALL+YGGVP+ FF + ALED +KA + N G DD V M+ GIP+
Sbjct: 408 ALLSYGGVPEEFFMGILNNALEDAH-GILSNKKAALRVALNYGDMDDNIVATMIGCGIPL 466
Query: 646 NEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGD 467
EP+LQ L + K+++ GK+ + SYY+MGTADP+G L+ +EVCIILD GQVSG+
Sbjct: 467 EEPYLQHHLSILKKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQVSGE 526
Query: 466 VLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFDGDLY 287
VLVYRNPG HFGD+H+ KATYV+E+E+ VG+AK+ IFF +G RS ADE++GGDFDGD++
Sbjct: 527 VLVYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMF 586
Query: 286 WVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXPTDFSSEDLEQYLFDQFLTCRFSPSNTTG 107
+V N +L+++K W P++FS E+LE LF FL RF PS T G
Sbjct: 587 FVSRNPRLLENFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSFTVG 646
Query: 106 LAANSWMAYMDRLLT 62
+AA+SW+A MDRLLT
Sbjct: 647 VAADSWLAMMDRLLT 661
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 246 bits (627), Expect = 9e-63
Identities = 129/274 (47%), Positives = 176/274 (64%)
Frame = -3
Query: 826 ALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPV 647
ALL+YGGVP+ +F L ALED + ++A + G DD V RM+ +GIP+
Sbjct: 461 ALLSYGGVPNEYFMNLLKDALEDAP-SVQSSKRAALRVSLRFGEMDDSIVTRMILSGIPI 519
Query: 646 NEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGD 467
+EPFL L + + K +R GK+ +++ +Y+MGTADP+G LK +EVCIILDHGQV G
Sbjct: 520 DEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGR 579
Query: 466 VLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFDGDLY 287
VLVY++PG HFGD+H+ ATYV+ +EE VG+AK+ IFF +G RS ADE+A DFDGD+Y
Sbjct: 580 VLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMY 639
Query: 286 WVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXPTDFSSEDLEQYLFDQFLTCRFSPSNTTG 107
WV N+ +L+ ++ W PTDFS ++LE LF FLT RF S+ G
Sbjct: 640 WVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAIG 699
Query: 106 LAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLL 5
+AA++W+ +MDRLLT S E + L KML L
Sbjct: 700 MAADNWLVFMDRLLTLRDDCSDEKECLKRKMLEL 733
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 246 bits (627), Expect = 9e-63
Identities = 129/274 (47%), Positives = 176/274 (64%)
Frame = -3
Query: 826 ALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPV 647
ALL+YGGVP+ +F L ALED + ++A + G DD V RM+ +GIP+
Sbjct: 475 ALLSYGGVPNEYFMNLLKDALEDAP-SVQSSKRAALRVSLRFGEMDDSIVTRMILSGIPI 533
Query: 646 NEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGD 467
+EPFL L + + K +R GK+ +++ +Y+MGTADP+G LK +EVCIILDHGQV G
Sbjct: 534 DEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGR 593
Query: 466 VLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFDGDLY 287
VLVY++PG HFGD+H+ ATYV+ +EE VG+AK+ IFF +G RS ADE+A DFDGD+Y
Sbjct: 594 VLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMY 653
Query: 286 WVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXPTDFSSEDLEQYLFDQFLTCRFSPSNTTG 107
WV N+ +L+ ++ W PTDFS ++LE LF FLT RF S+ G
Sbjct: 654 WVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAIG 713
Query: 106 LAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLL 5
+AA++W+ +MDRLLT S E + L KML L
Sbjct: 714 MAADNWLVFMDRLLTLRDDCSDEKECLKRKMLEL 747
>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 911
Score = 243 bits (621), Expect = 5e-62
Identities = 129/275 (46%), Positives = 176/275 (64%)
Frame = -3
Query: 826 ALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPV 647
+LL+YGGV +F L ALE+ + A K++ + +DDD RM+S+GIP+
Sbjct: 545 SLLSYGGVQKEYFMELLGSALEETKQVYLRKRAALKVVINYREMDDDCLTARMISSGIPL 604
Query: 646 NEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGD 467
NEP L+ RL + +R GK+ + +S+Y+MGTADP+G L+ NEVC+ILD+GQ+SG
Sbjct: 605 NEPHLRARLSRLAKIERTKLRGGKLPISDSFYLMGTADPTGVLESNEVCVILDNGQISGR 664
Query: 466 VLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFDGDLY 287
VLVYRNPG HFGDVH+ KA YV+E+ ++VGDAK+GIFFST+G RS A EIA GDFDGD+Y
Sbjct: 665 VLVYRNPGLHFGDVHVMKARYVEELADVVGDAKYGIFFSTKGPRSAATEIANGDFDGDMY 724
Query: 286 WVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXPTDFSSEDLEQYLFDQFLTCRFSPSNTTG 107
WV N+ V+ Y W P++FS++ LE LF QFL + +N +
Sbjct: 725 WVSINRKVVDSYTTSRPWSRMHSTPKAVSKKPSEFSADKLEYELFRQFLEAKSKGANMS- 783
Query: 106 LAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 2
+AA+SW+A+MDRLL E L KML L+
Sbjct: 784 VAADSWLAFMDRLLMLRDDNVDEMHSLKGKMLHLI 818
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 243 bits (621), Expect = 5e-62
Identities = 134/276 (48%), Positives = 174/276 (63%), Gaps = 1/276 (0%)
Frame = -3
Query: 826 ALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPV 647
ALL+YGGVP+ FF + AL+D ++ A K+ G+D D+T RM+ +GI +
Sbjct: 542 ALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISL 601
Query: 646 NEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGD 467
+EP+LQ RL + + K+++ GK+ + SYY+MGT DP+G LK NEVCIIL GQVS +
Sbjct: 602 DEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWE 661
Query: 466 -VLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFDGDL 290
VLVYRNPG HFGD+H+ KATYVKE+E+ VG +K+ IFF G RS ADEIAGGDFDGD+
Sbjct: 662 KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 721
Query: 289 YWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXPTDFSSEDLEQYLFDQFLTCRFSPSNTT 110
Y+V N +LK +K W P DFS E+LE LF FL RF PSN
Sbjct: 722 YFVSRNPELLKHFKESERW-MSTSKNLSANKRPIDFSLEELESELFKLFLNTRFCPSNAK 780
Query: 109 GLAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 2
LAA+ W A MDR LT ++E + E ML L+
Sbjct: 781 SLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLI 816
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 243 bits (621), Expect = 5e-62
Identities = 134/276 (48%), Positives = 174/276 (63%), Gaps = 1/276 (0%)
Frame = -3
Query: 826 ALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPV 647
ALL+YGGVP+ FF + AL+D ++ A K+ G+D D+T RM+ +GI +
Sbjct: 544 ALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISL 603
Query: 646 NEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGD 467
+EP+LQ RL + + K+++ GK+ + SYY+MGT DP+G LK NEVCIIL GQVS +
Sbjct: 604 DEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWE 663
Query: 466 -VLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFDGDL 290
VLVYRNPG HFGD+H+ KATYVKE+E+ VG +K+ IFF G RS ADEIAGGDFDGD+
Sbjct: 664 KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 723
Query: 289 YWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXPTDFSSEDLEQYLFDQFLTCRFSPSNTT 110
Y+V N +LK +K W P DFS E+LE LF FL RF PSN
Sbjct: 724 YFVSRNPELLKHFKESERW-MSTSKNLSANKRPIDFSLEELESELFKLFLNTRFCPSNAK 782
Query: 109 GLAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 2
LAA+ W A MDR LT ++E + E ML L+
Sbjct: 783 SLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLI 818
>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 1011
Score = 243 bits (620), Expect = 6e-62
Identities = 129/275 (46%), Positives = 176/275 (64%)
Frame = -3
Query: 826 ALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPV 647
+LL+YGGV +F L ALE+ + A K+ + +DD+ RM+S+GIP+
Sbjct: 543 SLLSYGGVHKEYFMELLGSALEETKQVYLRKRAALKVAINYREMDDECLTARMISSGIPL 602
Query: 646 NEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGD 467
NEP L RL + +R GK+ + +S+Y+MGTADP+G L+ NEVC+ILD+GQVSG
Sbjct: 603 NEPHLHARLSRLAKIERTKLRGGKLPISDSFYLMGTADPTGVLESNEVCVILDNGQVSGR 662
Query: 466 VLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFDGDLY 287
VLVYRNPG HFGDVH+ KA YV+E+ ++VGDAK+GIFFST+G RS A EIA GDFDGD+Y
Sbjct: 663 VLVYRNPGLHFGDVHVMKARYVEELADVVGDAKYGIFFSTKGPRSAATEIANGDFDGDMY 722
Query: 286 WVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXPTDFSSEDLEQYLFDQFLTCRFSPSNTTG 107
WV N+ ++ Y W P++FS+++LE LF QFL + +N +
Sbjct: 723 WVSINRKLVDSYTTSRPWIRMHSTPNAVSKKPSEFSADELEYELFRQFLEAKSKGANMS- 781
Query: 106 LAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 2
LAA+SW+A+MDRLLT + L KML L+
Sbjct: 782 LAADSWLAFMDRLLTLRDDNVDDMHSLKGKMLHLI 816
>ref|NP_001042304.1| Os01g0198000 [Oryza sativa Japonica Group]
gi|56201772|dbj|BAD73222.1| RNA-dependent RNA polymerase
-like [Oryza sativa Japonica Group]
gi|56201879|dbj|BAD73329.1| RNA-dependent RNA polymerase
-like [Oryza sativa Japonica Group]
gi|113531835|dbj|BAF04218.1| Os01g0198000 [Oryza sativa
Japonica Group] gi|215693837|dbj|BAG89036.1| unnamed
protein product [Oryza sativa Japonica Group]
Length = 582
Score = 240 bits (612), Expect = 5e-61
Identities = 127/275 (46%), Positives = 173/275 (62%)
Frame = -3
Query: 826 ALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPV 647
ALL+YGGVP+ FF L A+E+ D A + ++D RM+ +GIP+
Sbjct: 104 ALLHYGGVPEEFFMELLQTAIEEADNARFDYAGALNIAFNYADMEDSMPA-RMILSGIPL 162
Query: 646 NEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGD 467
E +LQ RL + K I+ GK+ +D+ YY+MGTADP+G+L PNEVC+ILD+GQVSGD
Sbjct: 163 EESYLQSRLDFLSLLERKGIKNGKIPIDDCYYLMGTADPTGKLGPNEVCVILDYGQVSGD 222
Query: 466 VLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFDGDLY 287
VLVY+ PG H GD+H+ KATY +IE++VG++K I F T G+RS ADE+A DFDGD+Y
Sbjct: 223 VLVYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIY 282
Query: 286 WVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXPTDFSSEDLEQYLFDQFLTCRFSPSNTTG 107
WV N +L+ +K W P DF+ +LE+ LF +FL RF+PS
Sbjct: 283 WVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARA 342
Query: 106 LAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 2
AA +W+ YMDRLLT + +S E L+ +KML LV
Sbjct: 343 TAATNWLVYMDRLLTVSLDES-EKKLIEKKMLKLV 376
>sp|Q5QMN4.2|RDR4_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 4; Short=OsRDR4
Length = 1183
Score = 240 bits (612), Expect = 5e-61
Identities = 127/275 (46%), Positives = 173/275 (62%)
Frame = -3
Query: 826 ALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPV 647
ALL+YGGVP+ FF L A+E+ D A + ++D RM+ +GIP+
Sbjct: 705 ALLHYGGVPEEFFMELLQTAIEEADNARFDYAGALNIAFNYADMEDSMPA-RMILSGIPL 763
Query: 646 NEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGD 467
E +LQ RL + K I+ GK+ +D+ YY+MGTADP+G+L PNEVC+ILD+GQVSGD
Sbjct: 764 EESYLQSRLDFLSLLERKGIKNGKIPIDDCYYLMGTADPTGKLGPNEVCVILDYGQVSGD 823
Query: 466 VLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFDGDLY 287
VLVY+ PG H GD+H+ KATY +IE++VG++K I F T G+RS ADE+A DFDGD+Y
Sbjct: 824 VLVYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIY 883
Query: 286 WVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXPTDFSSEDLEQYLFDQFLTCRFSPSNTTG 107
WV N +L+ +K W P DF+ +LE+ LF +FL RF+PS
Sbjct: 884 WVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARA 943
Query: 106 LAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 2
AA +W+ YMDRLLT + +S E L+ +KML LV
Sbjct: 944 TAATNWLVYMDRLLTVSLDES-EKKLIEKKMLKLV 977
>gb|EEE54053.1| hypothetical protein OsJ_00746 [Oryza sativa Japonica Group]
Length = 1148
Score = 240 bits (612), Expect = 5e-61
Identities = 127/275 (46%), Positives = 173/275 (62%)
Frame = -3
Query: 826 ALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPV 647
ALL+YGGVP+ FF L A+E+ D A + ++D RM+ +GIP+
Sbjct: 670 ALLHYGGVPEEFFMELLQTAIEEADNARFDYAGALNIAFNYADMEDSMPA-RMILSGIPL 728
Query: 646 NEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGD 467
E +LQ RL + K I+ GK+ +D+ YY+MGTADP+G+L PNEVC+ILD+GQVSGD
Sbjct: 729 EESYLQSRLDFLSLLERKGIKNGKIPIDDCYYLMGTADPTGKLGPNEVCVILDYGQVSGD 788
Query: 466 VLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFDGDLY 287
VLVY+ PG H GD+H+ KATY +IE++VG++K I F T G+RS ADE+A DFDGD+Y
Sbjct: 789 VLVYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIY 848
Query: 286 WVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXPTDFSSEDLEQYLFDQFLTCRFSPSNTTG 107
WV N +L+ +K W P DF+ +LE+ LF +FL RF+PS
Sbjct: 849 WVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARA 908
Query: 106 LAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 2
AA +W+ YMDRLLT + +S E L+ +KML LV
Sbjct: 909 TAATNWLVYMDRLLTVSLDES-EKKLIEKKMLKLV 942
>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
gi|557110064|gb|ESQ50361.1| hypothetical protein
EUTSA_v10001897mg [Eutrema salsugineum]
Length = 988
Score = 239 bits (611), Expect = 7e-61
Identities = 129/277 (46%), Positives = 176/277 (63%), Gaps = 2/277 (0%)
Frame = -3
Query: 826 ALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPV 647
ALL+YGGVP+ FF L +E+ ++ A K N G DD +M+ GIP+
Sbjct: 522 ALLSYGGVPNEFFLDLLLNTMEETKTIFNNKRAALKAAL-NHGDMDDQNAAQMILVGIPL 580
Query: 646 NEPFLQQRLREYLTNDIKN-IRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSG 470
+EP L+ RL L+N KN ++ G++ + SYY+MGT DP+G LK +EVC+IL+ GQ+SG
Sbjct: 581 DEPHLKDRL-SILSNIEKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQISG 639
Query: 469 DVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFDGDL 290
DVLVYRNPG HFGD+H+ KATYVK +EE VG++K+ +FF +G RS DEIAGGDFDGD+
Sbjct: 640 DVLVYRNPGVHFGDIHVLKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDM 699
Query: 289 YWVCTNKTVLKDYKLQPSW-XXXXXXXXXXXXXPTDFSSEDLEQYLFDQFLTCRFSPSNT 113
Y++ N +L+ +K W P DFS E+LE+ LFD FL RF SN
Sbjct: 700 YFISRNPELLEQFKPSEPWVSLSPPSKSNSTRKPIDFSPEELEEELFDMFLKARFHSSNV 759
Query: 112 TGLAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 2
G+AA+SW+ MDR LT +++E + KML L+
Sbjct: 760 IGMAADSWLTIMDRFLTLGDERAEEKAEMKRKMLSLI 796
>sp|Q5QMN5.2|RDR3_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 3; Short=OsRDR3
Length = 1153
Score = 238 bits (607), Expect = 2e-60
Identities = 126/275 (45%), Positives = 172/275 (62%), Gaps = 1/275 (0%)
Frame = -3
Query: 823 LLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVN 644
LL YGGVP+ +F L A+E C D E A ++ ++D + RM+ +GIP+
Sbjct: 685 LLCYGGVPEEYFLELLQSAIEGAENACYDYEDALRIAFSYADMEDSMSA-RMILSGIPLE 743
Query: 643 EPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDV 464
E +LQ RL + K I++GK+ +D YY+M T DP+G L+PNEVC+IL++GQ SGDV
Sbjct: 744 ESYLQHRLDFMAQQERKGIKQGKIPIDECYYLMDTTDPTGTLRPNEVCVILENGQFSGDV 803
Query: 463 LVYRNPGRHFGDVHLYKATYVKEIE-EIVGDAKFGIFFSTQGERSGADEIAGGDFDGDLY 287
LVY++PG HFGD+H+ KATY++++E E VG AK+ I F G RS ADE+A DFDGD+Y
Sbjct: 804 LVYKHPGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDGDIY 863
Query: 286 WVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXPTDFSSEDLEQYLFDQFLTCRFSPSNTTG 107
WV N +L+ +K W P D + LE+ LF +FL RF+PS G
Sbjct: 864 WVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTPSFALG 923
Query: 106 LAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 2
AA+SW+AYMDRLLT + + E L+ EKML LV
Sbjct: 924 TAADSWLAYMDRLLTDSLDEI-EKKLIEEKMLKLV 957
>gb|EEE54052.1| hypothetical protein OsJ_00745 [Oryza sativa Japonica Group]
Length = 1243
Score = 238 bits (607), Expect = 2e-60
Identities = 126/275 (45%), Positives = 172/275 (62%), Gaps = 1/275 (0%)
Frame = -3
Query: 823 LLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVN 644
LL YGGVP+ +F L A+E C D E A ++ ++D + RM+ +GIP+
Sbjct: 766 LLCYGGVPEEYFLELLQSAIEGAENACYDYEDALRIAFSYADMEDSMSA-RMILSGIPLE 824
Query: 643 EPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDV 464
E +LQ RL + K I++GK+ +D YY+M T DP+G L+PNEVC+IL++GQ SGDV
Sbjct: 825 ESYLQHRLDFMAQQERKGIKQGKIPIDECYYLMDTTDPTGTLRPNEVCVILENGQFSGDV 884
Query: 463 LVYRNPGRHFGDVHLYKATYVKEIE-EIVGDAKFGIFFSTQGERSGADEIAGGDFDGDLY 287
LVY++PG HFGD+H+ KATY++++E E VG AK+ I F G RS ADE+A DFDGD+Y
Sbjct: 885 LVYKHPGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDGDIY 944
Query: 286 WVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXPTDFSSEDLEQYLFDQFLTCRFSPSNTTG 107
WV N +L+ +K W P D + LE+ LF +FL RF+PS G
Sbjct: 945 WVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTPSFALG 1004
Query: 106 LAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 2
AA+SW+AYMDRLLT + + E L+ EKML LV
Sbjct: 1005 TAADSWLAYMDRLLTDSLDEI-EKKLIEEKMLKLV 1038
>ref|XP_006645607.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-dependent RNA polymerase
3-like [Oryza brachyantha]
Length = 1109
Score = 238 bits (606), Expect = 3e-60
Identities = 125/276 (45%), Positives = 173/276 (62%), Gaps = 1/276 (0%)
Frame = -3
Query: 826 ALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPV 647
ALL YGGVP+ +F L A+E C E A K+ ++D + RM+ +GIP+
Sbjct: 631 ALLCYGGVPEEYFLELLENAIEGAENACYYYEDALKIAFSYADMEDSISA-RMILSGIPL 689
Query: 646 NEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGD 467
E +LQ RL + K I++GK+ +D YY+MGT DP+G L PNEVC+IL++GQ+ GD
Sbjct: 690 EESYLQSRLAFMARQERKGIKQGKIPIDECYYLMGTTDPTGTLGPNEVCVILENGQLCGD 749
Query: 466 VLVYRNPGRHFGDVHLYKATYVKEIE-EIVGDAKFGIFFSTQGERSGADEIAGGDFDGDL 290
VLVY++PG HFGD+H+ KATY+K++E + VG +K+ I F T G RS ADE+A DFDGD+
Sbjct: 750 VLVYKHPGLHFGDIHVLKATYIKDLEKKYVGYSKYAILFPTSGPRSLADEMANSDFDGDM 809
Query: 289 YWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXPTDFSSEDLEQYLFDQFLTCRFSPSNTT 110
YWV N +L+ +K W P DF+ LE+ LF +FL RF+PS
Sbjct: 810 YWVSKNPKLLEHFKPSEPWVETITPKRRKQKKPQDFNESKLERLLFHEFLKTRFTPSYAL 869
Query: 109 GLAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 2
G AA+SW+AY+DR LT + +S E ++ EKM LV
Sbjct: 870 GTAADSWLAYVDRXLTGSLDES-EKKIMKEKMTKLV 904
>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
Length = 988
Score = 237 bits (605), Expect = 3e-60
Identities = 125/276 (45%), Positives = 169/276 (61%), Gaps = 1/276 (0%)
Frame = -3
Query: 826 ALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPV 647
ALL++GGVP+ FF L +ED + ++ A + N G D+Y M+ GIP+
Sbjct: 518 ALLSFGGVPNEFFMDLLRSNMEDANHVYSNKRSALRA-SINCGEKDEYNAAEMILCGIPL 576
Query: 646 NEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGD 467
+EPFL+ L + + K +R GK+ + + +Y+MGT DP+G LK N+VCII ++ Q+ GD
Sbjct: 577 DEPFLKHHLSRFAREEKKKLRGGKLYMPDCFYLMGTVDPTGHLKKNQVCIIHENSQIVGD 636
Query: 466 VLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGERSGADEIAGGDFDGDLY 287
VLVYRNPG HFGD+H ATYVKE+E VG +K+GIFF G RS ADEIAGGDFDGD Y
Sbjct: 637 VLVYRNPGLHFGDIHKMDATYVKELESYVGHSKYGIFFPRVGTRSVADEIAGGDFDGDTY 696
Query: 286 WVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXPTDFSSEDLEQYLFDQFLTCRFSPSNTTG 107
WV + +L+ ++ W P++FS E+LE+ LF FL RF PS G
Sbjct: 697 WVSNHPQLLQYFRKGDPWIENSVPLDSSVKKPSEFSPEELEEELFRLFLKTRFQPSYAMG 756
Query: 106 LAANSWMAYMDRLLT-PIVAKSKEADLLTEKMLLLV 2
++ NSWMA MDRLLT E + + E ML L+
Sbjct: 757 MSENSWMALMDRLLTLNNCTNENEKERVKENMLKLI 792