BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00021787
         (1299 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D sub...   246   1e-62
gb|EEC85033.1| hypothetical protein OsI_32338 [Oryza sativa Indi...   246   1e-62
gb|EEE70198.1| hypothetical protein OsJ_30285 [Oryza sativa Japo...   245   3e-62
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   238   3e-60
ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV su...   238   4e-60
gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub...   238   5e-60
ref|NP_001182824.1| DNA dependent RNA polymerase D largest subun...   238   5e-60
ref|XP_004970758.1| PREDICTED: DNA-directed RNA polymerase D sub...   234   5e-59
ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D sub...   234   5e-59
ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D sub...   234   5e-59
ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D sub...   234   5e-59
ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV su...   234   6e-59
gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indi...   234   8e-59
gb|EEE61535.1| hypothetical protein OsJ_15844 [Oryza sativa Japo...   233   1e-58
emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group]           233   1e-58
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   230   9e-58
ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV su...   230   1e-57
ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV su...   230   1e-57
ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV su...   230   1e-57
ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV su...   230   1e-57

>ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Brachypodium
            distachyon]
          Length = 1470

 Score =  246 bits (628), Expect = 1e-62
 Identities = 159/433 (36%), Positives = 234/433 (54%), Gaps = 3/433 (0%)
 Frame = -1

Query: 1296 QGSLWTGKQLFQMTLPSNLNYKSS-EVFISEGEILSCSGTSKWLSESDSSLMQKIIRDSP 1120
            QG LWTGKQLF M LPS +N+    ++ I + E+L+CSG S WL  + S L   + +   
Sbjct: 566  QGPLWTGKQLFGMLLPSGMNFSPDPKLHIKDSEVLACSGGSFWLQNNTSGLFSVLFKQYG 625

Query: 1119 SSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLACNNLQRLKMVYQINSGLIEAKKAMFAK 940
              A+ ++   Q ML EF+++ G SVSL DI+L  ++  R K   ++N  L EA++A    
Sbjct: 626  GEALEFLSSAQDMLCEFLTMRGLSVSLSDIYLFSDHYSRRKFAEEVNLALDEAEEAFRVT 685

Query: 939  QMLLDRH-AHRLLIEEGGSVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDIIKVVLDH 763
            Q+LL  +    L   +      DS +          I+   I+  F++++SD++K+V  H
Sbjct: 686  QILLSPNFIPHLKCYDDCDDLSDSYEQSDFVQSNLPIIKSSIMA-FKSVFSDLLKMVQQH 744

Query: 762  TEVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPSKLYRSFHTTVIPRE 583
            T   NSM+AM+ +GSKGS  K VQQ A +G+Q    +  FPF  PS+L  +       R 
Sbjct: 745  TPKDNSMMAMINAGSKGSMLKFVQQAACVGLQLPAGK--FPFRIPSELTCASWN----RH 798

Query: 582  STSQASKCKHVQGSLESINYLGLIGSSFFEGLNPFEYFIHSVSSRGNSFSQGADVPGXXX 403
             +      +  +  L   N   +I +SF EGLNP E  +HS+S R N FS+ ADVPG   
Sbjct: 799  KSLDCDISEGARKRLGGQNSHAVIRNSFIEGLNPLECLLHSISGRANFFSENADVPGTLT 858

Query: 402  XXXXXXXRDIVVAYDGTVRNLYGNQIVQFSYSNRIQDNLEINSPEAGLHLAGEAVGALAA 223
                   RDI VAYDGTVR+ YG QIVQF+Y     +++  +  + G    G  VG+ AA
Sbjct: 859  KNLMYHLRDIYVAYDGTVRSSYGQQIVQFTYDT--AEDIYTDCGQEGEF--GAPVGSWAA 914

Query: 222  SSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEY 46
             S+ E AYG L+  +      PL  LQE+L   +G +      LL LS++L+    G EY
Sbjct: 915  CSISEAAYGALDHPVNVIEDSPLMNLQEVLKCQKGTNSLDHFGLLFLSKNLKKYRYGFEY 974

Query: 45   GALLVKHHLETVE 7
             +L V+++LE ++
Sbjct: 975  ASLYVQNYLEPMD 987


>gb|EEC85033.1| hypothetical protein OsI_32338 [Oryza sativa Indica Group]
          Length = 1384

 Score =  246 bits (628), Expect = 1e-62
 Identities = 163/434 (37%), Positives = 235/434 (54%), Gaps = 4/434 (0%)
 Frame = -1

Query: 1296 QGSLWTGKQLFQMTLPSNLNYK-SSEVFISEGEILSCSGTSKWLSESDSSLMQKIIRDSP 1120
            QGSLWTGKQLF M LPS +N     ++ I + E+L+CS  S WL  + SS+   + ++  
Sbjct: 505  QGSLWTGKQLFGMLLPSGMNISFDQKLHIKDSEVLTCSSGSFWLQNNTSSVFSVMFKEYG 564

Query: 1119 SSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLACNNLQRLKMVYQINSGLIEAKKAMFAK 940
            S A+ ++   Q +L EF+++ G SVSL D++L  ++  R K+  +I+  L EA++A   K
Sbjct: 565  SKALEFLSSTQDVLCEFLTMKGLSVSLSDLYLFSDHYSRKKLSEEIHLALDEAEEAFQIK 624

Query: 939  QMLLDRHAHRLLIEEGGSVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDIIKVVLDHT 760
            Q+LL+  +   L    G     +       T+    + +  +  F+++++D++K+VL H 
Sbjct: 625  QILLNTVSIPNLKHYDGPDNLSNSHGQSDFTQVSLPIIKSSITGFKSVFNDLLKMVLQHV 684

Query: 759  EVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPSKL--YRSFHTTVIPR 586
               NSM+AM+ SGSKGS  K VQQ A +G+Q       FPF  PS+L          +  
Sbjct: 685  SKDNSMMAMINSGSKGSVLKFVQQTACVGLQL--PASTFPFRIPSELSCVSWNRQKSLNC 742

Query: 585  ESTSQASKCKHVQGSLESINYLGLIGSSFFEGLNPFEYFIHSVSSRGNSFSQGADVPGXX 406
            E T+  S+C   Q      N   +I +SF +GLNP E  +H++S R N FS+ ADVPG  
Sbjct: 743  EITNNTSECMAGQ------NMYAVIRNSFLDGLNPLECLLHAISGRANFFSENADVPGTL 796

Query: 405  XXXXXXXXRDIVVAYDGTVRNLYGNQIVQFSYSNRIQDNLEINSPEAGLHLAGEAVGALA 226
                    RD  VAYDGTVR+ YG QIVQFSY     D +  +    G    G  VG+ A
Sbjct: 797  TRKLMYHLRDTYVAYDGTVRSSYGRQIVQFSYDT--ADGMNNDHDLEG--EPGAPVGSWA 852

Query: 225  ASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQG-KDCCKKILLRLSRDLRNVHCGLE 49
            A S+ E AYG L+  + +    PL  LQE+L   +G K      LL LS+ L+    G E
Sbjct: 853  ACSISEAAYGALDHPVNALEDSPLMNLQEVLKCHKGTKSAVHTGLLFLSKYLKKYRYGFE 912

Query: 48   YGALLVKHHLETVE 7
            Y +L VK HLE V+
Sbjct: 913  YASLEVKDHLELVD 926


>gb|EEE70198.1| hypothetical protein OsJ_30285 [Oryza sativa Japonica Group]
          Length = 1384

 Score =  245 bits (626), Expect = 3e-62
 Identities = 163/434 (37%), Positives = 234/434 (53%), Gaps = 4/434 (0%)
 Frame = -1

Query: 1296 QGSLWTGKQLFQMTLPSNLNYK-SSEVFISEGEILSCSGTSKWLSESDSSLMQKIIRDSP 1120
            QGSLWTGKQLF M LPS +N     ++ I + E+L+CS  S WL  + SS+   + ++  
Sbjct: 505  QGSLWTGKQLFGMLLPSGMNISFDQKLHIKDSEVLTCSSGSFWLQNNTSSVFSVMFKEYG 564

Query: 1119 SSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLACNNLQRLKMVYQINSGLIEAKKAMFAK 940
            S A+ ++   Q +L EF+++ G SVSL D +L  ++  R K+  +I+  L EA++A   K
Sbjct: 565  SKALEFLSSTQDVLCEFLTMKGLSVSLSDFYLFSDHYSRKKLSEEIHLALDEAEEAFQIK 624

Query: 939  QMLLDRHAHRLLIEEGGSVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDIIKVVLDHT 760
            Q+LL+  +   L    G     +       T+    + +  +  F+++++D++K+VL H 
Sbjct: 625  QILLNTVSIPNLKHYDGPDNLSNSHGQSDFTQVSLPIIKSSITGFKSVFNDLLKMVLQHV 684

Query: 759  EVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPSKL--YRSFHTTVIPR 586
               NSM+AM+ SGSKGS  K VQQ A +G+Q       FPF  PS+L          +  
Sbjct: 685  SKDNSMMAMINSGSKGSVLKFVQQTACVGLQL--PASTFPFRIPSELSCVSWNRQKSLNC 742

Query: 585  ESTSQASKCKHVQGSLESINYLGLIGSSFFEGLNPFEYFIHSVSSRGNSFSQGADVPGXX 406
            E T+  S+C   Q      N   +I +SF +GLNP E  +H++S R N FS+ ADVPG  
Sbjct: 743  EITNNTSECMAGQ------NMYAVIRNSFLDGLNPLECLLHAISGRANFFSENADVPGTL 796

Query: 405  XXXXXXXXRDIVVAYDGTVRNLYGNQIVQFSYSNRIQDNLEINSPEAGLHLAGEAVGALA 226
                    RD  VAYDGTVR+ YG QIVQFSY     D +  +    G    G  VG+ A
Sbjct: 797  TRKLMYHLRDTYVAYDGTVRSSYGRQIVQFSYDT--ADGMNNDHDLEG--EPGAPVGSWA 852

Query: 225  ASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQG-KDCCKKILLRLSRDLRNVHCGLE 49
            A S+ E AYG L+  + +    PL  LQE+L   +G K      LL LS+ L+    G E
Sbjct: 853  ACSISEAAYGALDHPVNALEDSPLMNLQEVLKCHKGTKSAVHTGLLFLSKYLKKYRYGFE 912

Query: 48   YGALLVKHHLETVE 7
            Y +L VK HLE V+
Sbjct: 913  YASLEVKDHLERVD 926


>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  238 bits (608), Expect = 3e-60
 Identities = 159/445 (35%), Positives = 237/445 (53%), Gaps = 17/445 (3%)
 Frame = -1

Query: 1299 LQGSLWTGKQLFQMTLPSNLNY--KSSEVFISEGEILSCSGTSKWLSESDSSLMQKIIRD 1126
            L   +WTGKQLF M LP   NY    + V IS+GE++S S  S WL + D +L   +++D
Sbjct: 569  LDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNLFSSLVKD 628

Query: 1125 SPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLACNNLQRLKMVYQINSGLIEAKKAMF 946
                A+ ++   Q +L E++S+ G SVSL DI+L+ +++ R  M+ ++  GL+ A++   
Sbjct: 629  CQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCH 688

Query: 945  AKQMLLDRHAHRLLIEEG----GSVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDIIK 778
             KQ+L+D  +   LI  G      V  D Q +L  E +    L +  +C F+  + DI  
Sbjct: 689  FKQLLVDS-SQNFLIGSGENNQNGVVPDVQ-SLWYERQGSAALCQSSVCAFKQKFRDIQN 746

Query: 777  VVLDHTEVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPSKLYRSFHTT 598
            +V  +    NS++AM+K+GSKG+  KLVQQG  LG+Q        P  F           
Sbjct: 747  LVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQ----HSLVPLSFK---------- 792

Query: 597  VIPRESTSQASKCKHVQGSL--------ESINYLGLIGSSFFEGLNPFEYFIHSVSSRGN 442
             IP + +  A   + V G +        ES     ++ +SF  GLNP E F+HSV+SR +
Sbjct: 793  -IPHQLSCAAWNKQKVPGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDS 851

Query: 441  SFSQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQFSYS--NRIQDNLEINSPE 268
            SFS  AD+PG          RD+ +AYDGTVRN YGNQ+VQFSY+  +    +  IN   
Sbjct: 852  SFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDGINEDT 911

Query: 267  AGLHLAGEAVGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCC-KKILL 91
                + G+ VG+++A ++ E AY  L++ +      PL  L+ +L  G  K    + + L
Sbjct: 912  CAYDMGGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSL 971

Query: 90   RLSRDLRNVHCGLEYGALLVKHHLE 16
             LS+ L     G EYGAL VK+HLE
Sbjct: 972  FLSKKLEKRKHGFEYGALEVKNHLE 996


>ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
            brachyantha]
          Length = 1386

 Score =  238 bits (607), Expect = 4e-60
 Identities = 158/433 (36%), Positives = 229/433 (52%), Gaps = 3/433 (0%)
 Frame = -1

Query: 1296 QGSLWTGKQLFQMTLPSNLNYKSSE-VFISEGEILSCSGTSKWLSESDSSLMQKIIRDSP 1120
            QG LWTGKQLF + LPS +N    + + I + E+L+CS  S WL  + SSL   + ++  
Sbjct: 481  QGPLWTGKQLFGLLLPSGMNISFDQNLHIKDSEVLTCSSGSLWLQNNTSSLFSVMFKEYG 540

Query: 1119 SSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLACNNLQRLKMVYQINSGLIEAKKAMFAK 940
              A+ ++   Q +L EF+++ G SVSL D++L  ++  R K+  +++  L EA++A   K
Sbjct: 541  RKALQFLSSTQDVLCEFLTIRGLSVSLSDLYLFSDHYSRRKLSEEVHLALDEAEEAFQIK 600

Query: 939  QMLLDRHA-HRLLIEEGGSVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDIIKVVLDH 763
            Q+LL+  +   L   +G     +S           +I+   I   F++I++D++K+V  H
Sbjct: 601  QILLNPVSIPNLKYYDGADDLSNSYGQSDFTQASPSIIKSSIT-SFKSIFNDLLKMVQHH 659

Query: 762  TEVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPSKLYRSFHTTVIPRE 583
                NSM+AM+ SGSKGS  K VQQ A +G+Q    +  FPF  PS L          R 
Sbjct: 660  VSKDNSMMAMINSGSKGSIPKFVQQTACVGLQLPASK--FPFKIPSIL----SCVSWNRH 713

Query: 582  STSQASKCKHVQGSLESINYLGLIGSSFFEGLNPFEYFIHSVSSRGNSFSQGADVPGXXX 403
             +       +   S+   +   +I +SF +GLNP E  +H++S R N FS+ ADVPG   
Sbjct: 714  KSLDYEITDYTIESMGGQSMYAVIRNSFLDGLNPLECLLHAISGRANFFSENADVPGTLT 773

Query: 402  XXXXXXXRDIVVAYDGTVRNLYGNQIVQFSYSNRIQDNLEINSPEAGLHLAGEAVGALAA 223
                   RD  +AYDGTVR+ YG QIVQFSY     D + I     G    G  VG+ AA
Sbjct: 774  RKLMYHLRDTYIAYDGTVRSSYGQQIVQFSYDT--SDGMYIEHDIEG--EPGTPVGSWAA 829

Query: 222  SSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEY 46
             S+ E AYG L+  +      PL  LQE+L   +G +      LL LS+ LR    G EY
Sbjct: 830  CSISEAAYGALDHPVNGLEDSPLMNLQEVLKCHKGTNSVDHTGLLFLSKHLRKYRYGFEY 889

Query: 45   GALLVKHHLETVE 7
             +L VK HLE V+
Sbjct: 890  ASLEVKDHLERVD 902


>gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
            mays]
          Length = 1444

 Score =  238 bits (606), Expect = 5e-60
 Identities = 159/435 (36%), Positives = 234/435 (53%), Gaps = 6/435 (1%)
 Frame = -1

Query: 1296 QGSLWTGKQLFQMTLPSNLNYK-SSEVFISEGEILSCSGTSKWLSESDSSLMQKIIRDSP 1120
            QGSLWTGKQLF M LPS +N+   +E+ I + E+L+CS  S WL  + S L   + +   
Sbjct: 555  QGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWLQNNTSGLFSVMFKQYG 614

Query: 1119 SSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLACNNLQRLKMVYQINSGLIEAKKAMFAK 940
              A+ ++   Q +L EF+++ G SVSL D+++  ++  R K+   +   L EA++A   K
Sbjct: 615  CKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGVKLALYEAEEAFRVK 674

Query: 939  QMLLDRHAHRLLIEEGGSVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDIIKVVLDHT 760
            ++LLD     +L     +     +++  +++   +++   I+  F++++ D++K+V  H 
Sbjct: 675  KILLDPINIPVLKCHDETEDVTYRQSDCIQSNP-SVIRSSIMA-FKDVFRDLLKMVQQHV 732

Query: 759  EVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPSKL----YRSFHTTVI 592
               NSM+ M+ +GSKGS  K  QQ A +G+Q    +  FPF  PS+L    +    +   
Sbjct: 733  SNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASK--FPFRIPSQLSCISWNGQKSLNY 790

Query: 591  PRESTSQASKCKHVQGSLESINYLGLIGSSFFEGLNPFEYFIHSVSSRGNSFSQGADVPG 412
              ESTS+      V G     N   +I +SF EGLNP E  +H++S R N FS+ ADVPG
Sbjct: 791  EAESTSE-----RVGGQ----NLYAVIKNSFIEGLNPLECLLHAISGRANFFSENADVPG 841

Query: 411  XXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQFSYSNRIQDNLEINSPEAGLHLAGEAVGA 232
                      RDI VAYDGTVR+ YG QIVQFSY          +S +  +   G  VG 
Sbjct: 842  TLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSY----------DSVDDLVDKLGAPVGC 891

Query: 231  LAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCG 55
             AA S+ E AYG LE  +      PL  LQE+    +  +    I LL LSR L+    G
Sbjct: 892  RAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLFLSRHLKKYRYG 951

Query: 54   LEYGALLVKHHLETV 10
            LEY +L VK+HLE V
Sbjct: 952  LEYASLEVKNHLERV 966


>ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
            gi|219662980|gb|ACL30979.1| DNA dependent RNA polymerase
            D largest subunit [Zea mays] gi|414869425|tpg|DAA47982.1|
            TPA: putative DNA dependent RNA polymerase D largest
            subunit family protein [Zea mays]
            gi|414869426|tpg|DAA47983.1| TPA: putative DNA dependent
            RNA polymerase D largest subunit family protein [Zea
            mays]
          Length = 1444

 Score =  238 bits (606), Expect = 5e-60
 Identities = 159/435 (36%), Positives = 234/435 (53%), Gaps = 6/435 (1%)
 Frame = -1

Query: 1296 QGSLWTGKQLFQMTLPSNLNYK-SSEVFISEGEILSCSGTSKWLSESDSSLMQKIIRDSP 1120
            QGSLWTGKQLF M LPS +N+   +E+ I + E+L+CS  S WL  + S L   + +   
Sbjct: 555  QGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWLQNNTSGLFSVMFKQYG 614

Query: 1119 SSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLACNNLQRLKMVYQINSGLIEAKKAMFAK 940
              A+ ++   Q +L EF+++ G SVSL D+++  ++  R K+   +   L EA++A   K
Sbjct: 615  CKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGVKLALYEAEEAFRVK 674

Query: 939  QMLLDRHAHRLLIEEGGSVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDIIKVVLDHT 760
            ++LLD     +L     +     +++  +++   +++   I+  F++++ D++K+V  H 
Sbjct: 675  KILLDPINIPVLKCHDETEDVTYRQSDCIQSNP-SVIRSSIMA-FKDVFRDLLKMVQQHV 732

Query: 759  EVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPSKL----YRSFHTTVI 592
               NSM+ M+ +GSKGS  K  QQ A +G+Q    +  FPF  PS+L    +    +   
Sbjct: 733  SNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASK--FPFRIPSQLSCISWNGQKSLNY 790

Query: 591  PRESTSQASKCKHVQGSLESINYLGLIGSSFFEGLNPFEYFIHSVSSRGNSFSQGADVPG 412
              ESTS+      V G     N   +I +SF EGLNP E  +H++S R N FS+ ADVPG
Sbjct: 791  EAESTSE-----RVGGQ----NLYAVIKNSFIEGLNPLECLLHAISGRANFFSENADVPG 841

Query: 411  XXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQFSYSNRIQDNLEINSPEAGLHLAGEAVGA 232
                      RDI VAYDGTVR+ YG QIVQFSY          +S +  +   G  VG 
Sbjct: 842  TLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSY----------DSVDDLVDKLGAPVGC 891

Query: 231  LAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCG 55
             AA S+ E AYG LE  +      PL  LQE+    +  +    I LL LSR L+    G
Sbjct: 892  RAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLFLSRHLKKYRYG 951

Query: 54   LEYGALLVKHHLETV 10
            LEY +L VK+HLE V
Sbjct: 952  LEYASLEVKNHLERV 966


>ref|XP_004970758.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
            [Setaria italica]
          Length = 1181

 Score =  234 bits (598), Expect = 5e-59
 Identities = 157/443 (35%), Positives = 233/443 (52%), Gaps = 14/443 (3%)
 Frame = -1

Query: 1296 QGSLWTGKQLFQMTLPSNLNYK-SSEVFISEGEILSCSGTSKWLSESDSSLMQKIIRDSP 1120
            +GSLWTGKQ F M LPS +N+   S++ I + E+L+CS  S WL  S + L   + +   
Sbjct: 286  EGSLWTGKQFFSMLLPSGMNFSCDSKLHIIDSEVLTCSSGSSWLQNSTTGLFSIMFKQYG 345

Query: 1119 SSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLACNNLQRLKMVYQINSGLIEAKKAMFAK 940
              A+ ++   Q +L EF+++ G SVSL D+++  ++  R K+   +   L EA++A   K
Sbjct: 346  RKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLTQGVKLALDEAEEAFRIK 405

Query: 939  QMLLDR--------HAHRLLIEEGGSVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDI 784
            Q+LLD         H     +    S +  S  ++V  +          +  F+++++D+
Sbjct: 406  QILLDPINIPVLKCHDETEDVTYRQSDYIQSNLSVVRSS----------IMSFKDVFNDL 455

Query: 783  IKVVLDHTEVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPSKL----Y 616
            +K+V  H    NSM+ M+ +GSKGS  K VQQ A +G+Q    +  FPF  PS+L    +
Sbjct: 456  LKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASK--FPFRIPSQLSCVSW 513

Query: 615  RSFHTTVIPRESTSQASKCKHVQGSLESINYLGLIGSSFFEGLNPFEYFIHSVSSRGNSF 436
                +     ESTS+     HV+G     N   +I +SF EGLNP E  +H++S R N F
Sbjct: 514  NRQKSLNCEAESTSE-----HVEGQ----NLYAVIRNSFIEGLNPLECLLHAISGRANFF 564

Query: 435  SQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQFSYSNRIQDNLEINSPEAGLH 256
            S+ ADVPG          RD+ VAYDGTVR+ YG  I+QFSY     D++  N    G  
Sbjct: 565  SEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQFSYDT--ADDMCCNHDLVG-- 620

Query: 255  LAGEAVGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSR 79
              G  VG+ AA S+ E AYG L+  +      PL  LQE+    +  +    + LL LS+
Sbjct: 621  ELGAPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSGDHVGLLFLSK 680

Query: 78   DLRNVHCGLEYGALLVKHHLETV 10
             L+     LEY +L VK+HLE V
Sbjct: 681  HLKKYRYSLEYASLEVKNHLERV 703


>ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X3
            [Setaria italica]
          Length = 1362

 Score =  234 bits (598), Expect = 5e-59
 Identities = 157/443 (35%), Positives = 233/443 (52%), Gaps = 14/443 (3%)
 Frame = -1

Query: 1296 QGSLWTGKQLFQMTLPSNLNYK-SSEVFISEGEILSCSGTSKWLSESDSSLMQKIIRDSP 1120
            +GSLWTGKQ F M LPS +N+   S++ I + E+L+CS  S WL  S + L   + +   
Sbjct: 467  EGSLWTGKQFFSMLLPSGMNFSCDSKLHIIDSEVLTCSSGSSWLQNSTTGLFSIMFKQYG 526

Query: 1119 SSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLACNNLQRLKMVYQINSGLIEAKKAMFAK 940
              A+ ++   Q +L EF+++ G SVSL D+++  ++  R K+   +   L EA++A   K
Sbjct: 527  RKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLTQGVKLALDEAEEAFRIK 586

Query: 939  QMLLDR--------HAHRLLIEEGGSVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDI 784
            Q+LLD         H     +    S +  S  ++V  +          +  F+++++D+
Sbjct: 587  QILLDPINIPVLKCHDETEDVTYRQSDYIQSNLSVVRSS----------IMSFKDVFNDL 636

Query: 783  IKVVLDHTEVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPSKL----Y 616
            +K+V  H    NSM+ M+ +GSKGS  K VQQ A +G+Q    +  FPF  PS+L    +
Sbjct: 637  LKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASK--FPFRIPSQLSCVSW 694

Query: 615  RSFHTTVIPRESTSQASKCKHVQGSLESINYLGLIGSSFFEGLNPFEYFIHSVSSRGNSF 436
                +     ESTS+     HV+G     N   +I +SF EGLNP E  +H++S R N F
Sbjct: 695  NRQKSLNCEAESTSE-----HVEGQ----NLYAVIRNSFIEGLNPLECLLHAISGRANFF 745

Query: 435  SQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQFSYSNRIQDNLEINSPEAGLH 256
            S+ ADVPG          RD+ VAYDGTVR+ YG  I+QFSY     D++  N    G  
Sbjct: 746  SEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQFSYDT--ADDMCCNHDLVG-- 801

Query: 255  LAGEAVGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSR 79
              G  VG+ AA S+ E AYG L+  +      PL  LQE+    +  +    + LL LS+
Sbjct: 802  ELGAPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSGDHVGLLFLSK 861

Query: 78   DLRNVHCGLEYGALLVKHHLETV 10
             L+     LEY +L VK+HLE V
Sbjct: 862  HLKKYRYSLEYASLEVKNHLERV 884


>ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X2
            [Setaria italica]
          Length = 1450

 Score =  234 bits (598), Expect = 5e-59
 Identities = 157/443 (35%), Positives = 233/443 (52%), Gaps = 14/443 (3%)
 Frame = -1

Query: 1296 QGSLWTGKQLFQMTLPSNLNYK-SSEVFISEGEILSCSGTSKWLSESDSSLMQKIIRDSP 1120
            +GSLWTGKQ F M LPS +N+   S++ I + E+L+CS  S WL  S + L   + +   
Sbjct: 555  EGSLWTGKQFFSMLLPSGMNFSCDSKLHIIDSEVLTCSSGSSWLQNSTTGLFSIMFKQYG 614

Query: 1119 SSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLACNNLQRLKMVYQINSGLIEAKKAMFAK 940
              A+ ++   Q +L EF+++ G SVSL D+++  ++  R K+   +   L EA++A   K
Sbjct: 615  RKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLTQGVKLALDEAEEAFRIK 674

Query: 939  QMLLDR--------HAHRLLIEEGGSVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDI 784
            Q+LLD         H     +    S +  S  ++V  +          +  F+++++D+
Sbjct: 675  QILLDPINIPVLKCHDETEDVTYRQSDYIQSNLSVVRSS----------IMSFKDVFNDL 724

Query: 783  IKVVLDHTEVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPSKL----Y 616
            +K+V  H    NSM+ M+ +GSKGS  K VQQ A +G+Q    +  FPF  PS+L    +
Sbjct: 725  LKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASK--FPFRIPSQLSCVSW 782

Query: 615  RSFHTTVIPRESTSQASKCKHVQGSLESINYLGLIGSSFFEGLNPFEYFIHSVSSRGNSF 436
                +     ESTS+     HV+G     N   +I +SF EGLNP E  +H++S R N F
Sbjct: 783  NRQKSLNCEAESTSE-----HVEGQ----NLYAVIRNSFIEGLNPLECLLHAISGRANFF 833

Query: 435  SQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQFSYSNRIQDNLEINSPEAGLH 256
            S+ ADVPG          RD+ VAYDGTVR+ YG  I+QFSY     D++  N    G  
Sbjct: 834  SEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQFSYDT--ADDMCCNHDLVG-- 889

Query: 255  LAGEAVGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSR 79
              G  VG+ AA S+ E AYG L+  +      PL  LQE+    +  +    + LL LS+
Sbjct: 890  ELGAPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSGDHVGLLFLSK 949

Query: 78   DLRNVHCGLEYGALLVKHHLETV 10
             L+     LEY +L VK+HLE V
Sbjct: 950  HLKKYRYSLEYASLEVKNHLERV 972


>ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
            [Setaria italica] gi|514785102|ref|XP_004970757.1|
            PREDICTED: DNA-directed RNA polymerase D subunit 1-like
            isoform X4 [Setaria italica]
          Length = 1451

 Score =  234 bits (598), Expect = 5e-59
 Identities = 157/443 (35%), Positives = 233/443 (52%), Gaps = 14/443 (3%)
 Frame = -1

Query: 1296 QGSLWTGKQLFQMTLPSNLNYK-SSEVFISEGEILSCSGTSKWLSESDSSLMQKIIRDSP 1120
            +GSLWTGKQ F M LPS +N+   S++ I + E+L+CS  S WL  S + L   + +   
Sbjct: 556  EGSLWTGKQFFSMLLPSGMNFSCDSKLHIIDSEVLTCSSGSSWLQNSTTGLFSIMFKQYG 615

Query: 1119 SSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLACNNLQRLKMVYQINSGLIEAKKAMFAK 940
              A+ ++   Q +L EF+++ G SVSL D+++  ++  R K+   +   L EA++A   K
Sbjct: 616  RKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLTQGVKLALDEAEEAFRIK 675

Query: 939  QMLLDR--------HAHRLLIEEGGSVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDI 784
            Q+LLD         H     +    S +  S  ++V  +          +  F+++++D+
Sbjct: 676  QILLDPINIPVLKCHDETEDVTYRQSDYIQSNLSVVRSS----------IMSFKDVFNDL 725

Query: 783  IKVVLDHTEVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPSKL----Y 616
            +K+V  H    NSM+ M+ +GSKGS  K VQQ A +G+Q    +  FPF  PS+L    +
Sbjct: 726  LKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASK--FPFRIPSQLSCVSW 783

Query: 615  RSFHTTVIPRESTSQASKCKHVQGSLESINYLGLIGSSFFEGLNPFEYFIHSVSSRGNSF 436
                +     ESTS+     HV+G     N   +I +SF EGLNP E  +H++S R N F
Sbjct: 784  NRQKSLNCEAESTSE-----HVEGQ----NLYAVIRNSFIEGLNPLECLLHAISGRANFF 834

Query: 435  SQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQFSYSNRIQDNLEINSPEAGLH 256
            S+ ADVPG          RD+ VAYDGTVR+ YG  I+QFSY     D++  N    G  
Sbjct: 835  SEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQFSYDT--ADDMCCNHDLVG-- 890

Query: 255  LAGEAVGALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSR 79
              G  VG+ AA S+ E AYG L+  +      PL  LQE+    +  +    + LL LS+
Sbjct: 891  ELGAPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSGDHVGLLFLSK 950

Query: 78   DLRNVHCGLEYGALLVKHHLETV 10
             L+     LEY +L VK+HLE V
Sbjct: 951  HLKKYRYSLEYASLEVKNHLERV 973


>ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
            brachyantha]
          Length = 1492

 Score =  234 bits (597), Expect = 6e-59
 Identities = 159/436 (36%), Positives = 232/436 (53%), Gaps = 6/436 (1%)
 Frame = -1

Query: 1296 QGSLWTGKQLFQMTLPSNLNYKSSE-VFISEGEILSCSGTSKWLSESDSSLMQKIIRDSP 1120
            QG LWTGKQLF M +PS +N    E + I + E+L+ S  S WL  + SSL   +  +  
Sbjct: 587  QGPLWTGKQLFGMLIPSGMNINFDEKLHIKDSEVLAFSSGSFWLQNNTSSLFSVMFEEYG 646

Query: 1119 SSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLACNNLQRLKMVYQINSGLIEAKKAMFAK 940
              A+ ++   Q +L EF+++ G SVSL D +L  ++  R K++ +++  L EA++A   K
Sbjct: 647  CKALEFLSSSQDVLCEFLTMRGLSVSLSDFYLLSDHYSRRKLIEEVHLALDEAEEAFQIK 706

Query: 939  QMLLDRHAHRLL-IEEGGSVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDIIKVVLDH 763
            Q+LL+  +   L   +G     +S +          I+   I   F+++++D++K+V  H
Sbjct: 707  QILLNPVSIPYLKYYDGADDLLNSYEQSDYTQVSLPIIQSSIT-SFKSVFNDLLKMVHQH 765

Query: 762  TEVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPSKLYRSFHTTVIPRE 583
                NSM+AM+ SGSKGS  K VQQ A +G+Q       FPF  PS+L            
Sbjct: 766  ASKDNSMMAMINSGSKGSVLKFVQQTACVGLQL--PASIFPFRIPSELS-------CVSW 816

Query: 582  STSQASKCKHVQGSLESI---NYLGLIGSSFFEGLNPFEYFIHSVSSRGNSFSQGADVPG 412
            +  ++  C+   G+ E +   N   +I +SF +GLNP E  +H++S R N FS+ ADVPG
Sbjct: 817  NRHKSLNCEMTDGTSERMGGQNIYAVIRNSFLDGLNPLECLLHAISGRANFFSENADVPG 876

Query: 411  XXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQFSYSNRIQDNLEINSPEAGLHLAGEAVGA 232
                      RD  VAYDGTVR+ YG QIVQFSY+    D +  +    G    G  VG+
Sbjct: 877  TLTRKLMYHLRDTYVAYDGTVRSSYGQQIVQFSYNT--ADGMFRDHDLEG--EPGAPVGS 932

Query: 231  LAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQG-KDCCKKILLRLSRDLRNVHCG 55
             AA S+ E AYG L+  + +    PL  LQE+L   +  K      LL LS+ LR    G
Sbjct: 933  WAACSISEAAYGALDHPVNALEDSPLMNLQEVLKCRKSTKSVDHTGLLFLSKHLRKYRYG 992

Query: 54   LEYGALLVKHHLETVE 7
             EY +L VK HLE V+
Sbjct: 993  FEYASLQVKDHLERVD 1008


>gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indica Group]
          Length = 1598

 Score =  234 bits (596), Expect = 8e-59
 Identities = 155/436 (35%), Positives = 234/436 (53%), Gaps = 6/436 (1%)
 Frame = -1

Query: 1296 QGSLWTGKQLFQMTLPSNLNYK-SSEVFISEGEILSCSGTSKWLSESDSSLMQKIIRDSP 1120
            QG LWTGKQLF M LP  +N     ++ I + E+L+CS  S WL  + SSL   + ++  
Sbjct: 501  QGPLWTGKQLFGMLLPYGMNISFDQKLHIKDSEVLTCSSGSFWLQNNTSSLFSVMFKEYG 560

Query: 1119 SSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLACNNLQRLKMVYQINSGLIEAKKAMFAK 940
              A+ ++   Q +L EF+++ G SVSL D++L  ++  R K+  +++  L EA++A   K
Sbjct: 561  CKALEFLSSTQDVLCEFLTMWGLSVSLSDLYLFSDHYSRRKLSEEVHLALDEAEEAFQIK 620

Query: 939  QMLLDRHA-HRLLIEEGGSVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDIIKVVLDH 763
            Q+LL+  +   L   +GG    ++ +          I+    +  F+++++D++K+V  +
Sbjct: 621  QILLNSVSIPNLKYYDGGDDRSNTDEQSGFTQVSLPIIRSS-MTSFKSVFNDLLKMVQQY 679

Query: 762  TEVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPSKLYRSFHTTVIPRE 583
                NSM+ M+ SGSKGS  K VQQ A +G+Q    +  FPF  PS+L            
Sbjct: 680  VSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASK--FPFRIPSQLS-------CVSW 730

Query: 582  STSQASKCKHVQGSLESI---NYLGLIGSSFFEGLNPFEYFIHSVSSRGNSFSQGADVPG 412
            +  ++  C+   G+ E +   +   +I +SF +GLNP E  +H++S R N FS+ ADVPG
Sbjct: 731  NRHKSLNCEITDGTSECVGGQDMYAVIRNSFLDGLNPLECLLHAISGRANFFSENADVPG 790

Query: 411  XXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQFSYSNRIQDNLEINSPEAGLHLAGEAVGA 232
                      RD  VAYDGTVR+ YG QIV+FSY     D +  +    G    G  VG+
Sbjct: 791  TLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDT--ADGMYSDHDLEG--EPGAPVGS 846

Query: 231  LAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCG 55
             AA S+ E AYG L+  + S    PL  LQE+L   +G +      LL LS+ LR    G
Sbjct: 847  WAACSISEAAYGALDHPVNSLEDSPLMNLQEVLKCHKGTNSLDHTGLLFLSKHLRKYRYG 906

Query: 54   LEYGALLVKHHLETVE 7
             EY +L VK HLE V+
Sbjct: 907  FEYASLEVKDHLERVD 922


>gb|EEE61535.1| hypothetical protein OsJ_15844 [Oryza sativa Japonica Group]
          Length = 1623

 Score =  233 bits (595), Expect = 1e-58
 Identities = 154/436 (35%), Positives = 234/436 (53%), Gaps = 6/436 (1%)
 Frame = -1

Query: 1296 QGSLWTGKQLFQMTLPSNLNYK-SSEVFISEGEILSCSGTSKWLSESDSSLMQKIIRDSP 1120
            QG LWTGKQLF M LP  +N     ++ I + E+L+CS  S WL  + SSL   + ++  
Sbjct: 522  QGPLWTGKQLFGMLLPYGMNISFDQKLHIKDSEVLTCSSGSFWLQNNTSSLFSVMFKEYG 581

Query: 1119 SSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLACNNLQRLKMVYQINSGLIEAKKAMFAK 940
              A+ ++   Q +L EF+++ G SVSL D++L  ++  R K+  +++  L EA++A   K
Sbjct: 582  CKALEFLSSTQDVLCEFLTMWGLSVSLSDLYLFSDHYSRRKLSEEVHLALDEAEEAFQIK 641

Query: 939  QMLLDRHA-HRLLIEEGGSVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDIIKVVLDH 763
            Q+LL+  +   L   +GG    ++ +          I+    +  F+++++D++K+V  +
Sbjct: 642  QILLNSVSIPNLKYYDGGDDRSNTDEQSGFTQVSLPIIRSS-MTSFKSVFNDLLKMVQQY 700

Query: 762  TEVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPSKLYRSFHTTVIPRE 583
                NSM+ M+ SGSKGS  K VQQ A +G+Q    +  FPF  PS+L            
Sbjct: 701  VSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASK--FPFRIPSQLS-------CVSW 751

Query: 582  STSQASKCKHVQGSLESI---NYLGLIGSSFFEGLNPFEYFIHSVSSRGNSFSQGADVPG 412
            +  ++  C+   G+ E +   +   ++ +SF +GLNP E  +H++S R N FS+ ADVPG
Sbjct: 752  NRHKSLNCEITDGTSECVGGQDMYAVVRNSFLDGLNPLECLLHAISGRANFFSENADVPG 811

Query: 411  XXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQFSYSNRIQDNLEINSPEAGLHLAGEAVGA 232
                      RD  VAYDGTVR+ YG QIV+FSY     D +  +    G    G  VG+
Sbjct: 812  TLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDT--ADGMYSDHDLEG--EPGAPVGS 867

Query: 231  LAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCG 55
             AA S+ E AYG L+  + S    PL  LQE+L   +G +      LL LS+ LR    G
Sbjct: 868  WAACSISEAAYGALDHPVNSLEDSPLMNLQEVLKCHKGTNSLDHTGLLFLSKHLRKYRYG 927

Query: 54   LEYGALLVKHHLETVE 7
             EY +L VK HLE V+
Sbjct: 928  FEYASLEVKDHLERVD 943


>emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group]
          Length = 1407

 Score =  233 bits (595), Expect = 1e-58
 Identities = 155/436 (35%), Positives = 235/436 (53%), Gaps = 6/436 (1%)
 Frame = -1

Query: 1296 QGSLWTGKQLFQMTLPSNLNYK-SSEVFISEGEILSCSGTSKWLSESDSSLMQKIIRDSP 1120
            QG LWTGKQLF M LP  +N     ++ I + E+L+CS  S WL  + SSL   + ++  
Sbjct: 528  QGPLWTGKQLFGMLLPYGMNISFDQKLHIKDSEVLTCSSGSFWLQNNTSSLFSVMFKEYG 587

Query: 1119 SSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLACNNLQRLKMVYQINSGLIEAKKAMFAK 940
              A+ ++   Q +L EF+++ G SVSL D++L  ++  R K+  +++  L EA++A   K
Sbjct: 588  CKALEFLSSTQDVLCEFLTMWGLSVSLSDLYLFSDHYSRRKLSEEVHLALDEAEEAFQIK 647

Query: 939  QMLLDRHA-HRLLIEEGGSVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDIIKVVLDH 763
            Q+LL+  +   L   +GG    ++ +          I+    +  F+++++D++K+V  +
Sbjct: 648  QILLNSVSIPNLKYYDGGDDRSNTDEQSGFTQVSLPIIRSS-MTSFKSVFNDLLKMVQQY 706

Query: 762  TEVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPSKLYRSFHTTVIPRE 583
                NSM+ M+ SGSKGS  K VQQ A +G+Q    +  FPF  PS+L            
Sbjct: 707  VSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASK--FPFRIPSQLS-------CVSW 757

Query: 582  STSQASKCKHVQGSLESI---NYLGLIGSSFFEGLNPFEYFIHSVSSRGNSFSQGADVPG 412
            +  ++  C+   G+ E +   +   +I +SF +GLNP E  +H++S R N FS+ ADVPG
Sbjct: 758  NRHKSLNCEITDGTSECVGGQDMYAVIRNSFLDGLNPLECLLHAISGRANFFSENADVPG 817

Query: 411  XXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQFSYSNRIQDNLEINSPEAGLHLAGEAVGA 232
                      RD  VAYDGTVR+ YG QIV+FSY     D +  +    G  +A   VG+
Sbjct: 818  TLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDT--ADGMYSDHDLEGEPVA--PVGS 873

Query: 231  LAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCG 55
             AA S+ E AYG L+  + S    PL  LQE+L   +G +      LL LS+ LR    G
Sbjct: 874  WAACSISEAAYGALDHPVNSLEDSPLMNLQEVLKCHKGTNSLDHTGLLFLSKHLRKYRYG 933

Query: 54   LEYGALLVKHHLETVE 7
             EY +L VK HLE V+
Sbjct: 934  FEYASLEVKDHLERVD 949


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
            sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
            QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Cucumis sativus]
          Length = 1469

 Score =  230 bits (587), Expect = 9e-58
 Identities = 153/437 (35%), Positives = 231/437 (52%), Gaps = 7/437 (1%)
 Frame = -1

Query: 1299 LQGSLWTGKQLFQMTLPSNLNYKSSE--VFISEGEILSCSGTSKWLSESDSSLMQKIIRD 1126
            L+   WTGKQLF + LP + +Y S    VFI +GE++S  G S WL +S  +L Q +I  
Sbjct: 548  LRNCAWTGKQLFSILLPPDFDYSSPSHNVFIEKGELISSEG-SYWLRDSGRNLFQALIEH 606

Query: 1125 SPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLACNNLQRLKMVYQINSGLIEAKKAMF 946
                 + Y+   Q +L E++S  G SVSL D++L+ ++     M+  I  GL EA++   
Sbjct: 607  CEGKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHENMMDDIFCGLQEAEETCN 666

Query: 945  AKQMLLDRHAHRLL--IEEGGSVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDIIKVV 772
             KQ+++D H   L+   E+   +   + + L+ E +K   L++  +  F+ ++ DI  +V
Sbjct: 667  LKQLMVDSHKEILIGNDEDNQHLLSIAVERLIYEKQKSAALNQASVDAFKKVFRDIQNLV 726

Query: 771  LDHTEVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPSKLY-RSFHTTV 595
              ++   NS++ M K+GSKG+  KLVQ    LG+Q         F  P KL   ++++  
Sbjct: 727  YKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQ--HSLVTLSFSLPHKLSCAAWNSQK 784

Query: 594  IPRESTSQASKCKHVQGSLESINYLGLIGSSFFEGLNPFEYFIHSVSSRGNSFSQGADVP 415
            +PR           +    +S     ++ +SF  GLNPFE F HSV++R +SFS  A+VP
Sbjct: 785  MPRYIQKDG-----LPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 839

Query: 414  GXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQFSYS-NRIQDNLEINSPEAGLHLAGEAV 238
            G          RDI  AYDGTVRN YGNQ+VQF Y  +R     E  +      + G  V
Sbjct: 840  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTSESESENNNRDRGIGGHPV 899

Query: 237  GALAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKIL-LRLSRDLRNVH 61
            G+LAA ++ E AY  L++ +    + PL  L+ +L  G  ++  K+   L LS  L    
Sbjct: 900  GSLAACAISEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRS 959

Query: 60   CGLEYGALLVKHHLETV 10
             G EYGAL VK+HLE V
Sbjct: 960  YGFEYGALGVKNHLERV 976


>ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X4
            [Glycine max]
          Length = 1381

 Score =  230 bits (586), Expect = 1e-57
 Identities = 155/433 (35%), Positives = 240/433 (55%), Gaps = 8/433 (1%)
 Frame = -1

Query: 1290 SLWTGKQLFQMTLPSNLNYK--SSEVFISEGEILSCSGTSKWLSESDSSLMQKIIRDSPS 1117
            SLW GKQLF M LP + +Y   S  V +S+GE++S S  S WL +SD ++ Q ++     
Sbjct: 460  SLWNGKQLFSMLLPYDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQG 519

Query: 1116 SAVHYIGCCQSMLNEFISLSGFSVSLLDIHLACNNLQRLKMVYQINSGLIEAKKAMFAKQ 937
              ++++   Q +L E++S++GFSVSL D++L+ ++  R  M+ +I  GL +A++A   KQ
Sbjct: 520  KTLNFLYAAQKVLCEWLSMTGFSVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQ 579

Query: 936  MLLDRHAHRLL--IEEGGSVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDIIKVVLDH 763
            +LLD +   L   ++E  +    +   L  E +    L +  +  FR ++ +I  +   +
Sbjct: 580  LLLDYYCDFLSGSLQESENAITVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKY 639

Query: 762  TEVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPSKLYRSFHTTVIPRE 583
               GNS +AM K+GSKG+  KLVQ    LG+Q    R ++      +L R  H +     
Sbjct: 640  ACKGNSFLAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSY------RLPR--HLSCADWN 691

Query: 582  STSQASKCKHVQGSLESI-NYL--GLIGSSFFEGLNPFEYFIHSVSSRGNSFSQGADVPG 412
            S       +   G+LES+ +Y+   ++ SSF  GLNP E F+HSV++R +SFS  AD+PG
Sbjct: 692  SQKWVDSIQMSSGTLESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADLPG 751

Query: 411  XXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQFSYSNRIQDNLEINSPEAGLHLAGEAVGA 232
                      RD+  AYDGTVRNLYGNQ++QFSY   I+++   N       L GE+VGA
Sbjct: 752  TLTRRLMFFMRDLYDAYDGTVRNLYGNQLIQFSYD--IEEDSSCNKGFQQYALGGESVGA 809

Query: 231  LAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGK-DCCKKILLRLSRDLRNVHCG 55
            ++A ++ E AY  L + +    + PL  L+ +L  G  K +  + + L LS  L     G
Sbjct: 810  ISACAISEAAYSALGQPVSLLETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHG 869

Query: 54   LEYGALLVKHHLE 16
             EY AL VK++LE
Sbjct: 870  FEYAALEVKNYLE 882


>ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
            [Glycine max]
          Length = 1455

 Score =  230 bits (586), Expect = 1e-57
 Identities = 155/433 (35%), Positives = 240/433 (55%), Gaps = 8/433 (1%)
 Frame = -1

Query: 1290 SLWTGKQLFQMTLPSNLNYK--SSEVFISEGEILSCSGTSKWLSESDSSLMQKIIRDSPS 1117
            SLW GKQLF M LP + +Y   S  V +S+GE++S S  S WL +SD ++ Q ++     
Sbjct: 537  SLWNGKQLFSMLLPYDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQG 596

Query: 1116 SAVHYIGCCQSMLNEFISLSGFSVSLLDIHLACNNLQRLKMVYQINSGLIEAKKAMFAKQ 937
              ++++   Q +L E++S++GFSVSL D++L+ ++  R  M+ +I  GL +A++A   KQ
Sbjct: 597  KTLNFLYAAQKVLCEWLSMTGFSVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQ 656

Query: 936  MLLDRHAHRLL--IEEGGSVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDIIKVVLDH 763
            +LLD +   L   ++E  +    +   L  E +    L +  +  FR ++ +I  +   +
Sbjct: 657  LLLDYYCDFLSGSLQESENAITVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKY 716

Query: 762  TEVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPSKLYRSFHTTVIPRE 583
               GNS +AM K+GSKG+  KLVQ    LG+Q    R ++      +L R  H +     
Sbjct: 717  ACKGNSFLAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSY------RLPR--HLSCADWN 768

Query: 582  STSQASKCKHVQGSLESI-NYL--GLIGSSFFEGLNPFEYFIHSVSSRGNSFSQGADVPG 412
            S       +   G+LES+ +Y+   ++ SSF  GLNP E F+HSV++R +SFS  AD+PG
Sbjct: 769  SQKWVDSIQMSSGTLESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADLPG 828

Query: 411  XXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQFSYSNRIQDNLEINSPEAGLHLAGEAVGA 232
                      RD+  AYDGTVRNLYGNQ++QFSY   I+++   N       L GE+VGA
Sbjct: 829  TLTRRLMFFMRDLYDAYDGTVRNLYGNQLIQFSYD--IEEDSSCNKGFQQYALGGESVGA 886

Query: 231  LAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGK-DCCKKILLRLSRDLRNVHCG 55
            ++A ++ E AY  L + +    + PL  L+ +L  G  K +  + + L LS  L     G
Sbjct: 887  ISACAISEAAYSALGQPVSLLETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHG 946

Query: 54   LEYGALLVKHHLE 16
             EY AL VK++LE
Sbjct: 947  FEYAALEVKNYLE 959


>ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Glycine max]
          Length = 1457

 Score =  230 bits (586), Expect = 1e-57
 Identities = 155/433 (35%), Positives = 240/433 (55%), Gaps = 8/433 (1%)
 Frame = -1

Query: 1290 SLWTGKQLFQMTLPSNLNYK--SSEVFISEGEILSCSGTSKWLSESDSSLMQKIIRDSPS 1117
            SLW GKQLF M LP + +Y   S  V +S+GE++S S  S WL +SD ++ Q ++     
Sbjct: 537  SLWNGKQLFSMLLPYDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQG 596

Query: 1116 SAVHYIGCCQSMLNEFISLSGFSVSLLDIHLACNNLQRLKMVYQINSGLIEAKKAMFAKQ 937
              ++++   Q +L E++S++GFSVSL D++L+ ++  R  M+ +I  GL +A++A   KQ
Sbjct: 597  KTLNFLYAAQKVLCEWLSMTGFSVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQ 656

Query: 936  MLLDRHAHRLL--IEEGGSVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDIIKVVLDH 763
            +LLD +   L   ++E  +    +   L  E +    L +  +  FR ++ +I  +   +
Sbjct: 657  LLLDYYCDFLSGSLQESENAITVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKY 716

Query: 762  TEVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPSKLYRSFHTTVIPRE 583
               GNS +AM K+GSKG+  KLVQ    LG+Q    R ++      +L R  H +     
Sbjct: 717  ACKGNSFLAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSY------RLPR--HLSCADWN 768

Query: 582  STSQASKCKHVQGSLESI-NYL--GLIGSSFFEGLNPFEYFIHSVSSRGNSFSQGADVPG 412
            S       +   G+LES+ +Y+   ++ SSF  GLNP E F+HSV++R +SFS  AD+PG
Sbjct: 769  SQKWVDSIQMSSGTLESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADLPG 828

Query: 411  XXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQFSYSNRIQDNLEINSPEAGLHLAGEAVGA 232
                      RD+  AYDGTVRNLYGNQ++QFSY   I+++   N       L GE+VGA
Sbjct: 829  TLTRRLMFFMRDLYDAYDGTVRNLYGNQLIQFSYD--IEEDSSCNKGFQQYALGGESVGA 886

Query: 231  LAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGK-DCCKKILLRLSRDLRNVHCG 55
            ++A ++ E AY  L + +    + PL  L+ +L  G  K +  + + L LS  L     G
Sbjct: 887  ISACAISEAAYSALGQPVSLLETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHG 946

Query: 54   LEYGALLVKHHLE 16
             EY AL VK++LE
Sbjct: 947  FEYAALEVKNYLE 959


>ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Glycine max]
          Length = 1458

 Score =  230 bits (586), Expect = 1e-57
 Identities = 155/433 (35%), Positives = 240/433 (55%), Gaps = 8/433 (1%)
 Frame = -1

Query: 1290 SLWTGKQLFQMTLPSNLNYK--SSEVFISEGEILSCSGTSKWLSESDSSLMQKIIRDSPS 1117
            SLW GKQLF M LP + +Y   S  V +S+GE++S S  S WL +SD ++ Q ++     
Sbjct: 537  SLWNGKQLFSMLLPYDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQG 596

Query: 1116 SAVHYIGCCQSMLNEFISLSGFSVSLLDIHLACNNLQRLKMVYQINSGLIEAKKAMFAKQ 937
              ++++   Q +L E++S++GFSVSL D++L+ ++  R  M+ +I  GL +A++A   KQ
Sbjct: 597  KTLNFLYAAQKVLCEWLSMTGFSVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQ 656

Query: 936  MLLDRHAHRLL--IEEGGSVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDIIKVVLDH 763
            +LLD +   L   ++E  +    +   L  E +    L +  +  FR ++ +I  +   +
Sbjct: 657  LLLDYYCDFLSGSLQESENAITVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKY 716

Query: 762  TEVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPSKLYRSFHTTVIPRE 583
               GNS +AM K+GSKG+  KLVQ    LG+Q    R ++      +L R  H +     
Sbjct: 717  ACKGNSFLAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSY------RLPR--HLSCADWN 768

Query: 582  STSQASKCKHVQGSLESI-NYL--GLIGSSFFEGLNPFEYFIHSVSSRGNSFSQGADVPG 412
            S       +   G+LES+ +Y+   ++ SSF  GLNP E F+HSV++R +SFS  AD+PG
Sbjct: 769  SQKWVDSIQMSSGTLESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADLPG 828

Query: 411  XXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQFSYSNRIQDNLEINSPEAGLHLAGEAVGA 232
                      RD+  AYDGTVRNLYGNQ++QFSY   I+++   N       L GE+VGA
Sbjct: 829  TLTRRLMFFMRDLYDAYDGTVRNLYGNQLIQFSYD--IEEDSSCNKGFQQYALGGESVGA 886

Query: 231  LAASSLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGK-DCCKKILLRLSRDLRNVHCG 55
            ++A ++ E AY  L + +    + PL  L+ +L  G  K +  + + L LS  L     G
Sbjct: 887  ISACAISEAAYSALGQPVSLLETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHG 946

Query: 54   LEYGALLVKHHLE 16
             EY AL VK++LE
Sbjct: 947  FEYAALEVKNYLE 959