BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00021174
         (498 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus...    92   9e-17
gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]              92   9e-17
gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotc...    92   9e-17
gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotc...    92   9e-17
gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]        88   1e-15
gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]        88   1e-15
gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]        88   1e-15
gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]        88   1e-15
gb|AHI12892.1| replicase polyprotein, partial [Blueberry scorch ...    58   2e-06
gb|AGO58936.1| replicase polyprotein, partial [Blueberry scorch ...    58   2e-06
gb|AAY18409.1| replicase polyprotein [Blueberry scorch virus]          58   2e-06
ref|YP_595727.1| replicase [Daphne virus S] gi|58415290|emb|CAF0...    58   2e-06
gb|AHI12893.1| replicase polyprotein, partial [Blueberry scorch ...    57   2e-06
gb|AHI12888.1| replicase polyprotein, partial [Blueberry scorch ...    57   3e-06
ref|NP_612579.1| polyprotein [Blueberry scorch virus] gi|409711|...    57   3e-06
gb|ADQ43733.1| 223K polyprotein [Potato virus M]                       57   3e-06
gb|AAR31772.1| RNA-dependent RNA polymerase [Grapevine rupestris...    57   3e-06
gb|AHI12896.1| replicase polyprotein, partial [Blueberry scorch ...    56   6e-06
gb|AHI12889.1| replicase polyprotein, partial [Blueberry scorch ...    56   6e-06
gb|AGV05451.1| polyprotein [Grapevine rupestris stem pitting-ass...    56   6e-06

>ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus]
           gi|81964041|sp|Q91QZ3.1|RDRP_CLBVS RecName: Full=RNA
           replication protein; Includes: RecName:
           Full=RNA-directed RNA polymerase; Includes: RecName:
           Full=Helicase gi|14270249|emb|CAC39422.1| hypothetical
           protein [Citrus leaf blotch virus]
          Length = 1962

 Score = 91.7 bits (226), Expect = 9e-17
 Identities = 44/90 (48%), Positives = 56/90 (62%)
 Frame = +1

Query: 1   IKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIELFQNGSFPHFHPFSRTPEN 180
           +  IY  AA+ ++SHSE  N  FA+SL  + KK  + +GIEL+ NG  PH HP S+  EN
Sbjct: 22  VDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVGIELYPNGYLPHSHPLSKIFEN 81

Query: 181 HILCDVSPGVVNADSFISCPIKEKKVQCIK 270
           H+L DV PGVVN    + C IKE KV   K
Sbjct: 82  HLLFDVLPGVVNTSRLVMCSIKESKVLVFK 111


>gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]
          Length = 1962

 Score = 91.7 bits (226), Expect = 9e-17
 Identities = 44/90 (48%), Positives = 56/90 (62%)
 Frame = +1

Query: 1   IKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIELFQNGSFPHFHPFSRTPEN 180
           +  IY  AA+ ++SHSE  N  FA+SL  + KK  + +GIEL+ NG  PH HP S+  EN
Sbjct: 22  VDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVGIELYPNGYLPHSHPLSKIFEN 81

Query: 181 HILCDVSPGVVNADSFISCPIKEKKVQCIK 270
           H+L DV PGVVN    + C IKE KV   K
Sbjct: 82  HLLFDVLPGVVNTSRLVMCSIKESKVLVFK 111


>gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 91.7 bits (226), Expect = 9e-17
 Identities = 44/90 (48%), Positives = 56/90 (62%)
 Frame = +1

Query: 1   IKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIELFQNGSFPHFHPFSRTPEN 180
           +  IY  AA+ ++SHSE  N  FA+SL  + KK  + +GIEL+ NG  PH HP S+  EN
Sbjct: 22  VDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVGIELYPNGYLPHSHPLSKIFEN 81

Query: 181 HILCDVSPGVVNADSFISCPIKEKKVQCIK 270
           H+L DV PGVVN    + C IKE KV   K
Sbjct: 82  HLLFDVLPGVVNTSRLVMCSIKESKVLVFK 111


>gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 91.7 bits (226), Expect = 9e-17
 Identities = 44/90 (48%), Positives = 56/90 (62%)
 Frame = +1

Query: 1   IKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIELFQNGSFPHFHPFSRTPEN 180
           +  IY  AA+ ++SHSE  N  FA+SL  + KK  + +GIEL+ NG  PH HP S+  EN
Sbjct: 22  VDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVGIELYPNGYLPHSHPLSKIFEN 81

Query: 181 HILCDVSPGVVNADSFISCPIKEKKVQCIK 270
           H+L DV PGVVN    + C IKE KV   K
Sbjct: 82  HLLFDVLPGVVNTSRLVMCSIKESKVLVFK 111


>gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 42/91 (46%), Positives = 56/91 (61%)
 Frame = +1

Query: 1   IKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIELFQNGSFPHFHPFSRTPEN 180
           +  +Y  AA+ ++SHSE  N  FA++L  + KK  + +GIEL+ NG  PH HP S+  EN
Sbjct: 22  VDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVGIELYPNGYMPHSHPLSKIFEN 81

Query: 181 HILCDVSPGVVNADSFISCPIKEKKVQCIKS 273
           HIL DV P VV+    I C IKE KV   K+
Sbjct: 82  HILFDVLPDVVSTSKLIMCSIKESKVLIFKN 112


>gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 42/91 (46%), Positives = 56/91 (61%)
 Frame = +1

Query: 1   IKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIELFQNGSFPHFHPFSRTPEN 180
           +  +Y  AA+ ++SHSE  N  FA++L  + KK  + +GIEL+ NG  PH HP S+  EN
Sbjct: 22  VDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVGIELYPNGYMPHSHPLSKIFEN 81

Query: 181 HILCDVSPGVVNADSFISCPIKEKKVQCIKS 273
           HIL DV P VV+    I C IKE KV   K+
Sbjct: 82  HILFDVLPDVVSTSKLIMCSIKESKVLIFKN 112


>gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 42/91 (46%), Positives = 56/91 (61%)
 Frame = +1

Query: 1   IKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIELFQNGSFPHFHPFSRTPEN 180
           +  +Y  AA+ ++SHSE  N  FA++L  + KK  + +GIEL+ NG  PH HP S+  EN
Sbjct: 22  VDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVGIELYPNGYMPHSHPLSKIFEN 81

Query: 181 HILCDVSPGVVNADSFISCPIKEKKVQCIKS 273
           HIL DV P VV+    I C IKE KV   K+
Sbjct: 82  HILFDVLPDVVSTSKLIMCSIKESKVLIFKN 112


>gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 42/91 (46%), Positives = 56/91 (61%)
 Frame = +1

Query: 1   IKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIELFQNGSFPHFHPFSRTPEN 180
           +  +Y  AA+ ++SHSE  N  FA++L  + KK  + +GIEL+ NG  PH HP S+  EN
Sbjct: 22  VDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVGIELYPNGYMPHSHPLSKIFEN 81

Query: 181 HILCDVSPGVVNADSFISCPIKEKKVQCIKS 273
           HIL DV P VV+    I C IKE KV   K+
Sbjct: 82  HILFDVLPDVVSTSKLIMCSIKESKVLIFKN 112


>gb|AHI12892.1| replicase polyprotein, partial [Blueberry scorch virus]
          Length = 149

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
 Frame = +1

Query: 10  IYKPAAEALVS---------HSELNNSLFAHSLEPFLKKNLTGLGIELFQNGSFPHFHPF 162
           +++P A++L++         H + N   F +S+    K++L+  GI L     FPH HP 
Sbjct: 13  LFEPTAQSLIASAAVSVFQKHEKDNFEWFRYSVPAIAKEHLSKAGIYLSPYAGFPHSHPV 72

Query: 163 SRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIKS 273
            +T EN+IL  V PG+VN+ +F    IKE K+  +KS
Sbjct: 73  CKTLENYILYVVLPGIVNS-TFFFVGIKEFKINFLKS 108


>gb|AGO58936.1| replicase polyprotein, partial [Blueberry scorch virus]
          Length = 139

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
 Frame = +1

Query: 10  IYKPAAEALVS---------HSELNNSLFAHSLEPFLKKNLTGLGIELFQNGSFPHFHPF 162
           +++P A++L++         H + N   F +S+    K++L+  GI L     FPH HP 
Sbjct: 9   LFEPTAQSLIASAAVSVFQKHEKDNFEWFRYSVPAIAKEHLSKAGIYLSPYAGFPHSHPV 68

Query: 163 SRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIKS 273
            +T EN+IL  V PG+VN+ +F    IKE K+  +KS
Sbjct: 69  CKTLENYILYVVLPGIVNS-TFFFVGIKEFKINFLKS 104


>gb|AAY18409.1| replicase polyprotein [Blueberry scorch virus]
          Length = 1968

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
 Frame = +1

Query: 10  IYKPAAEALVS---------HSELNNSLFAHSLEPFLKKNLTGLGIELFQNGSFPHFHPF 162
           +++P A++L++         H + N   F +S+    K++L+  GI L     FPH HP 
Sbjct: 15  LFEPTAQSLIASAAVSVFQKHEKDNFEWFRYSVPAIAKEHLSKAGIYLSPYAGFPHSHPV 74

Query: 163 SRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIKS 273
            +T EN+IL  V PG+VN+ +F    IKE K+  +KS
Sbjct: 75  CKTLENYILYVVLPGIVNS-TFFFVGIKEFKINFLKS 110


>ref|YP_595727.1| replicase [Daphne virus S] gi|58415290|emb|CAF04326.1| replicase
           [Daphne virus S]
          Length = 2004

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
 Frame = +1

Query: 67  FAHSLEPFLKKNLTGLGIELFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIK 246
           F ++LEP  KKNLT  GI L    + PH HP  +T EN++L  V P VV+ +SF+   +K
Sbjct: 43  FCYALEPEAKKNLTNAGIYLSPFSAMPHSHPVCKTLENYLLYKVLPSVVD-NSFLFVGMK 101

Query: 247 EKKVQCIKS-NPNL---EVLN 297
           + K++ +K+ N NL   EV+N
Sbjct: 102 QFKLELLKARNSNLSMVEVIN 122


>gb|AHI12893.1| replicase polyprotein, partial [Blueberry scorch virus]
          Length = 109

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 34/88 (38%), Positives = 47/88 (53%)
 Frame = +1

Query: 10  IYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIELFQNGSFPHFHPFSRTPENHIL 189
           I   A  A   H + N   F +S+    K++L+  GI L     FPH HP  +T EN+IL
Sbjct: 2   IASAAVSAFQKHEKDNFEWFRYSVPAIAKEHLSKAGIYLSPYAGFPHSHPVCKTLENYIL 61

Query: 190 CDVSPGVVNADSFISCPIKEKKVQCIKS 273
             V PG+VN+ +F    IKE K+  +KS
Sbjct: 62  YVVLPGIVNS-TFFFVGIKEFKINFLKS 88


>gb|AHI12888.1| replicase polyprotein, partial [Blueberry scorch virus]
          Length = 144

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
 Frame = +1

Query: 10  IYKPAAEALVS---------HSELNNSLFAHSLEPFLKKNLTGLGIELFQNGSFPHFHPF 162
           +++P A++L++         H + N   F +++  F K++L+  GI L     FPH HP 
Sbjct: 11  LFEPTAQSLIASAAVSAFQRHEKDNFEWFRYNVPAFAKEHLSKAGIYLSPYAGFPHSHPV 70

Query: 163 SRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIKS 273
            +T EN+IL  V P +VN+ SF    IK+ K+  +KS
Sbjct: 71  CKTLENYILYVVVPSIVNS-SFFFVGIKDFKINFLKS 106


>ref|NP_612579.1| polyprotein [Blueberry scorch virus] gi|409711|gb|AAA68984.1| ORF
           [Blueberry scorch virus]
          Length = 1967

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
 Frame = +1

Query: 10  IYKPAAEALVS---------HSELNNSLFAHSLEPFLKKNLTGLGIELFQNGSFPHFHPF 162
           +++P A++L++         H + N   F +S+  F K++L+  GI L     FPH HP 
Sbjct: 15  LFEPTAQSLIASAAVSAFQRHEKDNFEWFRYSVPAFAKEHLSKAGIYLSPYAGFPHSHPV 74

Query: 163 SRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIKS 273
            +T EN+IL  V P +VN+ +F    IK+ K+  +KS
Sbjct: 75  CKTLENYILYVVVPSIVNS-TFFFVGIKDFKINFLKS 110


>gb|ADQ43733.1| 223K polyprotein [Potato virus M]
          Length = 1964

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
 Frame = +1

Query: 1   IKRIYKPAAEALVSHS---------ELNNSLFAHSLEPFLKKNLTGLGIELFQNGSFPHF 153
           I   ++PA +A++++S         E N   F + L P  K+ L+  GI L    +  H 
Sbjct: 12  IVNCFEPATQAVIANSAATLYKNFEEQNCQYFNYYLSPLAKRKLSMAGIYLSPYSAVVHS 71

Query: 154 HPFSRTPENHILCDVSPGVVNADSFISCPIKEKKVQCIKSN-PNLE-VLNLNKGAYMLKV 327
           HP  +T EN+IL  V P  +N+ SF    IKE+K+Q +KS   NL+ V  +N+       
Sbjct: 72  HPVCKTLENYILYSVLPSYINS-SFYFVGIKERKLQLLKSKCKNLDSVQVVNRYVTSADR 130

Query: 328 YSFINDF 348
             + NDF
Sbjct: 131 MRYTNDF 137


>gb|AAR31772.1| RNA-dependent RNA polymerase [Grapevine rupestris stem
           pitting-associated virus]
          Length = 2161

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
 Frame = +1

Query: 7   RIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIELFQNGSFPHFHPFSRTPENHI 186
           R+   A +ALV   E  +SLF+ +L    K+ L   GI L      PH HP  +T ENHI
Sbjct: 23  RVSATALKALVDIEESRHSLFSFALPDRCKERLISSGIYLSPYSFKPHSHPVCKTLENHI 82

Query: 187 LCDVSPGVVNADSFISCPIKEKKVQCIK-SNPNLEVLNL 300
           L +V P  +N +SF    IK+ K+Q +K  N +L ++ L
Sbjct: 83  LYNVLPSYIN-NSFYFVGIKDFKLQFLKRRNKDLSLIAL 120


>gb|AHI12896.1| replicase polyprotein, partial [Blueberry scorch virus]
          Length = 129

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 33/88 (37%), Positives = 46/88 (52%)
 Frame = +1

Query: 10  IYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIELFQNGSFPHFHPFSRTPENHIL 189
           I   A      H + N   F +S+    K++L+  GI L     FPH HP  +T EN+IL
Sbjct: 10  IASAAVSVFQKHEKDNFEWFRYSVPAIAKEHLSKAGIYLSPYAGFPHSHPVCKTLENYIL 69

Query: 190 CDVSPGVVNADSFISCPIKEKKVQCIKS 273
             V PG+VN+ +F    IKE K+  +KS
Sbjct: 70  YVVLPGIVNS-TFFFVGIKEFKINFLKS 96


>gb|AHI12889.1| replicase polyprotein, partial [Blueberry scorch virus]
          Length = 128

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 33/88 (37%), Positives = 47/88 (53%)
 Frame = +1

Query: 10  IYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIELFQNGSFPHFHPFSRTPENHIL 189
           I   A  A   H + N   F +S+  F K++L+  GI L     FPH HP  +T EN+IL
Sbjct: 2   IASAAVSAFQRHEKDNFEWFRYSVPAFAKEHLSKAGIYLSPYAGFPHSHPVCKTLENYIL 61

Query: 190 CDVSPGVVNADSFISCPIKEKKVQCIKS 273
             V P +VN+ +F    IK+ K+  +KS
Sbjct: 62  YVVVPSIVNS-TFFFVGIKDFKINFLKS 88


>gb|AGV05451.1| polyprotein [Grapevine rupestris stem pitting-associated virus]
          Length = 2161

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
 Frame = +1

Query: 7   RIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIELFQNGSFPHFHPFSRTPENHI 186
           R+   A +ALV   E  ++LF+ +L    K+ L   GI L      PH HP  +T ENHI
Sbjct: 23  RVSATALKALVDIEESQHNLFSFALSDRSKERLISSGIYLSPYSFRPHSHPVCKTLENHI 82

Query: 187 LCDVSPGVVNADSFISCPIKEKKVQCIKS-NPNLEVLNL 300
           L +V P  VN +SF    IK+ K+Q +K  N +L ++ L
Sbjct: 83  LYNVLPSYVN-NSFYFVGIKDFKLQFLKKRNKDLSLVAL 120