BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00020641
         (713 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr...   201   2e-49
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...   198   1e-48
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no...   198   2e-48
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   198   2e-48
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   198   2e-48
ref|XP_006836567.1| hypothetical protein AMTR_s00131p00068700 [A...   197   2e-48
gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus pe...   197   3e-48
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub...   197   4e-48
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...   196   8e-48
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub...   195   1e-47
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag...   195   1e-47
emb|CBI40152.3| unnamed protein product [Vitis vinifera]              192   7e-47
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   192   7e-47
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub...   192   1e-46
ref|XP_002299208.2| DNA-directed RNA polymerase alpha subunit fa...   192   1e-46
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub...   189   8e-46
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...   187   3e-45
ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Caps...   187   4e-45
gb|EOY19811.1| DNA-directed RNA polymerase E subunit 1, putative...   186   5e-45
gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative...   186   5e-45

>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
            gi|557522591|gb|ESR33958.1| hypothetical protein
            CICLE_v10004129mg [Citrus clementina]
          Length = 1867

 Score =  201 bits (511), Expect = 2e-49
 Identities = 98/219 (44%), Positives = 143/219 (65%)
 Frame = +3

Query: 54   SRNIGEAMKLYENIEVGDLINRSLQEGDIEFINRPPSIHKHSIQAMRVFLHPGKTMVINP 233
            S ++ E  K +  +  G +++R + +GD  FINRPP+ HKHS+QA+ V++H   T+ INP
Sbjct: 383  SYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINP 442

Query: 234  LICGPLGGDFDGDCLHTFFPKSLESKAELLQLLSVDKQIFSSHSGEANIVLTVDTLLAAK 413
            LICGPL  DFDGDC+H F+P+SL +KAE+L+L SV+KQ+ SSH+G  N+ L  D LL+ K
Sbjct: 443  LICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLK 502

Query: 414  LISQSLFVDKATMAQLAMWALRSVPDPAILSPHNGSSLWTAVQVIQTVLPDNMNLKGNKS 593
            ++ +  F+DKA   QLAM+AL  +P PA+   H     WTA+Q++Q+VLP   +  G++ 
Sbjct: 503  VMFKKYFLDKAFAQQLAMFALSPLPRPALSKAHCSGPRWTALQILQSVLPPGFDSCGDRY 562

Query: 594  LIKSGIIHAMDADKYEIQDTLSEIFKSLVEEDGSERALE 710
            LIK   +   D D+  I   ++EI  S+  E G E  LE
Sbjct: 563  LIKKSEVLNGDFDRDTIPSVINEIVTSIFFEKGPEEVLE 601


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score =  198 bits (504), Expect = 1e-48
 Identities = 100/219 (45%), Positives = 145/219 (66%)
 Frame = +3

Query: 54   SRNIGEAMKLYENIEVGDLINRSLQEGDIEFINRPPSIHKHSIQAMRVFLHPGKTMVINP 233
            S ++ E  K +  +  G +++R + +GD  FINRPP+ HKHS+QA+ V++H   T+ INP
Sbjct: 383  SYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINP 442

Query: 234  LICGPLGGDFDGDCLHTFFPKSLESKAELLQLLSVDKQIFSSHSGEANIVLTVDTLLAAK 413
            LICGPL  DFDGDC+H F+P+SL +KAE+L+L SV+KQ+ SSH+G  N+ L  D LL+ K
Sbjct: 443  LICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLK 502

Query: 414  LISQSLFVDKATMAQLAMWALRSVPDPAILSPHNGSSLWTAVQVIQTVLPDNMNLKGNKS 593
            ++ +  F+DKA   QLAM+AL  +P PA LS    S+ WTA+Q++Q+VLP   +  G++ 
Sbjct: 503  VMFKKYFLDKAFTQQLAMFALSPLPRPA-LSKARCSARWTALQILQSVLPPGFDSCGDRY 561

Query: 594  LIKSGIIHAMDADKYEIQDTLSEIFKSLVEEDGSERALE 710
            LIK   +   D D+  I   ++EI  S+  E G E  LE
Sbjct: 562  LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLE 600


>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
          Length = 2054

 Score =  198 bits (503), Expect = 2e-48
 Identities = 96/217 (44%), Positives = 147/217 (67%)
 Frame = +3

Query: 60   NIGEAMKLYENIEVGDLINRSLQEGDIEFINRPPSIHKHSIQAMRVFLHPGKTMVINPLI 239
            ++ E  K +  +++G +++R + +GDI FINRPP+ HKHS+QA+RV++H   T+ INPLI
Sbjct: 389  SLREGSKGHTFLKLGQVVHRRIMDGDIVFINRPPTTHKHSLQALRVYVHEDNTVKINPLI 448

Query: 240  CGPLGGDFDGDCLHTFFPKSLESKAELLQLLSVDKQIFSSHSGEANIVLTVDTLLAAKLI 419
            CGPL  DFDGDC+H F+P+S  +KAE+L+L S++KQI SSHSG   + L  D+LL+ K++
Sbjct: 449  CGPLSADFDGDCVHLFYPQSPAAKAEVLELFSLEKQILSSHSGGMILQLACDSLLSLKIM 508

Query: 420  SQSLFVDKATMAQLAMWALRSVPDPAILSPHNGSSLWTAVQVIQTVLPDNMNLKGNKSLI 599
             ++ F+DK    QL M+A  S+P PA    H+G   WTA+QV+QT LP +++  G++ LI
Sbjct: 509  FKTYFMDKIAAQQLVMFASSSLPQPAFWLTHSGDPFWTALQVLQTALPTSLDCYGDRFLI 568

Query: 600  KSGIIHAMDADKYEIQDTLSEIFKSLVEEDGSERALE 710
            K   I  +D ++      +++I  S+  E GSE  L+
Sbjct: 569  KGSDILVLDFNR--DVSVINDIGASICSEKGSEEVLK 603


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  198 bits (503), Expect = 2e-48
 Identities = 94/206 (45%), Positives = 139/206 (67%)
 Frame = +3

Query: 93   IEVGDLINRSLQEGDIEFINRPPSIHKHSIQAMRVFLHPGKTMVINPLICGPLGGDFDGD 272
            ++ G +++R + +GDI FINRPP+ HKHS+QA+RV+LH    + INPLICGPL  DFDGD
Sbjct: 394  LKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALRVYLHDDHVVKINPLICGPLSADFDGD 453

Query: 273  CLHTFFPKSLESKAELLQLLSVDKQIFSSHSGEANIVLTVDTLLAAKLISQSLFVDKATM 452
            C+H F+P+S+ +KAE+L L SV+KQ+ SSHSG  N+ L  D+LL+ K++ +  F+ KA  
Sbjct: 454  CIHLFYPQSIAAKAEVLGLFSVEKQLLSSHSGNLNLQLANDSLLSLKMMFRKYFLGKAAA 513

Query: 453  AQLAMWALRSVPDPAILSPHNGSSLWTAVQVIQTVLPDNMNLKGNKSLIKSGIIHAMDAD 632
             QLAM+    +P PA+L   +GS  WTA+Q++QTVLP + +  G+  LIK+      D D
Sbjct: 514  QQLAMFVSSYLPPPALLGVRSGSLHWTALQILQTVLPASFDCHGDSYLIKNSNFLKFDFD 573

Query: 633  KYEIQDTLSEIFKSLVEEDGSERALE 710
            +  +   ++EI  S+  + G E  L+
Sbjct: 574  RDAMPSLINEILTSIFFQKGPEEVLK 599


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score =  198 bits (503), Expect = 2e-48
 Identities = 94/206 (45%), Positives = 139/206 (67%)
 Frame = +3

Query: 93   IEVGDLINRSLQEGDIEFINRPPSIHKHSIQAMRVFLHPGKTMVINPLICGPLGGDFDGD 272
            ++ G +++R + +GDI FINRPP+ HKHS+QA+RV+LH    + INPLICGPL  DFDGD
Sbjct: 424  LKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALRVYLHDDHVVKINPLICGPLSADFDGD 483

Query: 273  CLHTFFPKSLESKAELLQLLSVDKQIFSSHSGEANIVLTVDTLLAAKLISQSLFVDKATM 452
            C+H F+P+S+ +KAE+L L SV+KQ+ SSHSG  N+ L  D+LL+ K++ +  F+ KA  
Sbjct: 484  CIHLFYPQSIAAKAEVLGLFSVEKQLLSSHSGNLNLQLANDSLLSLKMMFRKYFLGKAAA 543

Query: 453  AQLAMWALRSVPDPAILSPHNGSSLWTAVQVIQTVLPDNMNLKGNKSLIKSGIIHAMDAD 632
             QLAM+    +P PA+L   +GS  WTA+Q++QTVLP + +  G+  LIK+      D D
Sbjct: 544  QQLAMFVSSYLPPPALLGVRSGSLHWTALQILQTVLPASFDCHGDSYLIKNSNFLKFDFD 603

Query: 633  KYEIQDTLSEIFKSLVEEDGSERALE 710
            +  +   ++EI  S+  + G E  L+
Sbjct: 604  RDAMPSLINEILTSIFFQKGPEEVLK 629


>ref|XP_006836567.1| hypothetical protein AMTR_s00131p00068700 [Amborella trichopoda]
            gi|548839106|gb|ERM99420.1| hypothetical protein
            AMTR_s00131p00068700 [Amborella trichopoda]
          Length = 1916

 Score =  197 bits (502), Expect = 2e-48
 Identities = 96/214 (44%), Positives = 147/214 (68%)
 Frame = +3

Query: 69   EAMKLYENIEVGDLINRSLQEGDIEFINRPPSIHKHSIQAMRVFLHPGKTMVINPLICGP 248
            ++ K  +++++G++INR + +GDI FINRPPS HKHSIQA  V++H   T+ INPLIC P
Sbjct: 397  DSSKGSKSLKIGNVINRRIVDGDIVFINRPPSTHKHSIQAFSVYVHEDSTIKINPLICEP 456

Query: 249  LGGDFDGDCLHTFFPKSLESKAELLQLLSVDKQIFSSHSGEANIVLTVDTLLAAKLISQS 428
             G DFDGDC+H F+P+SL ++AE ++L SV++Q+ SSHSG  N+    D+LL+AKL+ ++
Sbjct: 457  FGADFDGDCIHIFYPQSLAARAEAIELFSVEQQLLSSHSGSLNVKFMHDSLLSAKLVFKT 516

Query: 429  LFVDKATMAQLAMWALRSVPDPAILSPHNGSSLWTAVQVIQTVLPDNMNLKGNKSLIKSG 608
             FV++AT+ QL+MW L S  +PAI+   +G  LWT +Q++Q+ LP + +  G + LI   
Sbjct: 517  YFVNRATVQQLSMWTLPSFIEPAIVKARDG-PLWTVLQLLQSGLPSSFDCSGPRYLISHS 575

Query: 609  IIHAMDADKYEIQDTLSEIFKSLVEEDGSERALE 710
             I  M   + ++   L+EI  S+V   G + AL+
Sbjct: 576  EILEMQPTRDQLPPLLTEILNSIVLMKGPKEALK 609


>gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
          Length = 1855

 Score =  197 bits (501), Expect = 3e-48
 Identities = 92/217 (42%), Positives = 143/217 (65%)
 Frame = +3

Query: 60   NIGEAMKLYENIEVGDLINRSLQEGDIEFINRPPSIHKHSIQAMRVFLHPGKTMVINPLI 239
            ++ E  K +  +  G +++R + +GD+ F+NRPP+ HKHS+QA++V++H    + INPLI
Sbjct: 386  SLREGSKGHTFLRPGQVVHRRIMDGDLVFVNRPPTTHKHSLQALQVYVHDDHVVKINPLI 445

Query: 240  CGPLGGDFDGDCLHTFFPKSLESKAELLQLLSVDKQIFSSHSGEANIVLTVDTLLAAKLI 419
            CGPL  DFDGDC+H F+P+SL +KAE+L+L SV+KQ+ SSHSG+ N+ L  D LL+ K++
Sbjct: 446  CGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHSGKPNLQLAADALLSLKMM 505

Query: 420  SQSLFVDKATMAQLAMWALRSVPDPAILSPHNGSSLWTAVQVIQTVLPDNMNLKGNKSLI 599
             +  F+DKA   QLAM+A  S+P PA+L  ++  S WTA Q++QT LP + +  G+  L+
Sbjct: 506  FKKYFLDKAAAQQLAMFASSSLPRPALLKANSAHSYWTAFQILQTALPAHFDCSGDNYLV 565

Query: 600  KSGIIHAMDADKYEIQDTLSEIFKSLVEEDGSERALE 710
                I  +D     +   +++I  S+  E G E  L+
Sbjct: 566  NKSEILNIDFSTSSVAAVMNDIATSVFFEKGGEDVLK 602


>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1991

 Score =  197 bits (500), Expect = 4e-48
 Identities = 90/216 (41%), Positives = 144/216 (66%)
 Frame = +3

Query: 60   NIGEAMKLYENIEVGDLINRSLQEGDIEFINRPPSIHKHSIQAMRVFLHPGKTMVINPLI 239
            ++ E  K +  ++ G +++R + +GD+ F+NRPP+ HKHS+QA++V++H  K + INPLI
Sbjct: 382  SLREGSKGHTFLKPGQVVHRRIMDGDLVFVNRPPTTHKHSLQALQVYVHEDKVVKINPLI 441

Query: 240  CGPLGGDFDGDCLHTFFPKSLESKAELLQLLSVDKQIFSSHSGEANIVLTVDTLLAAKLI 419
            CGPL  DFDGDC+H F+P+SL +KAE+++L SV+KQ+ SSHSG+ N+ L  D+LL+ KL+
Sbjct: 442  CGPLSADFDGDCIHLFYPQSLAAKAEVMELFSVEKQLLSSHSGKPNLQLATDSLLSLKLM 501

Query: 420  SQSLFVDKATMAQLAMWALRSVPDPAILSPHNGSSLWTAVQVIQTVLPDNMNLKGNKSLI 599
             +  F +KA M QLAM+   S+P PA+L  ++    WTA+Q++QT LP      G++ L+
Sbjct: 502  FKKYFFNKAAMQQLAMFVSSSLPQPALLKANSTVPCWTALQILQTALPAQFQSSGDRHLV 561

Query: 600  KSGIIHAMDADKYEIQDTLSEIFKSLVEEDGSERAL 707
            K   +  +D     +   +++I  S+  E  +E  L
Sbjct: 562  KDSEVLLLDCSTSLVPSLINDIGTSIFFEKSAEDVL 597


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 991

 Score =  196 bits (497), Expect = 8e-48
 Identities = 93/214 (43%), Positives = 144/214 (67%), Gaps = 1/214 (0%)
 Frame = +3

Query: 60   NIGEAMKLYENIEVGDLINRSLQEGDIEFINRPPSIHKHSIQAMRVFLHPGKTMVINPLI 239
            ++ E  K +  + +G +++R + +GD+ FINRPP+ HKHS+QA+ V++H G T+ INPLI
Sbjct: 385  SLREGSKGHTFLRLGQIVHRRIMDGDMVFINRPPTTHKHSLQALSVYVHDGHTVKINPLI 444

Query: 240  CGPLGGDFDGDCLHTFFPKSLESKAELLQLLSVDKQIFSSHSGEANIVLTVDTLLAAKLI 419
            CGPL  DFDGDC+H F+P+SL +KAE+L+L SV+KQ+ SSHSG  N+ LT D+LL+ K +
Sbjct: 445  CGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLTSDSLLSLKTM 504

Query: 420  SQSLFVDKATMAQLAMW-ALRSVPDPAILSPHNGSSLWTAVQVIQTVLPDNMNLKGNKSL 596
              + F+D+A   QLAM+ +  S+P PA+   H    +WTA+Q++QT LP   +  G + L
Sbjct: 505  FNTYFLDRAAAQQLAMFVSSSSLPQPALWKAHCSVPIWTALQILQTALPSQFDCSGERYL 564

Query: 597  IKSGIIHAMDADKYEIQDTLSEIFKSLVEEDGSE 698
            I +  I  +D  +  +Q  +++I  S+  E G +
Sbjct: 565  ISNTDIVKVDFSRDVVQAVINDIVISMFFEKGPD 598


>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
            arietinum]
          Length = 2263

 Score =  195 bits (495), Expect = 1e-47
 Identities = 91/216 (42%), Positives = 144/216 (66%)
 Frame = +3

Query: 60   NIGEAMKLYENIEVGDLINRSLQEGDIEFINRPPSIHKHSIQAMRVFLHPGKTMVINPLI 239
            ++ E  K +  ++ G +++R + +GD+ FINRPP+ HKHS+QA+ V++H   T+ INPLI
Sbjct: 387  SLREGSKGHTYLKPGQIVHRRIMDGDVVFINRPPTTHKHSLQALVVYIHDDHTVKINPLI 446

Query: 240  CGPLGGDFDGDCLHTFFPKSLESKAELLQLLSVDKQIFSSHSGEANIVLTVDTLLAAKLI 419
            CGPLG DFDGDC+H F+P+SL +KAE+L+L SV+KQ+ SSHSG  N+ L+ D+LL+ K++
Sbjct: 447  CGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLSTDSLLSLKML 506

Query: 420  SQSLFVDKATMAQLAMWALRSVPDPAILSPHNGSSLWTAVQVIQTVLPDNMNLKGNKSLI 599
             +S F+D+A   Q+AM+    +P PA+    +G S WT+VQ++Q  LP + +  G + LI
Sbjct: 507  VKSCFLDRAAANQMAMFLSLPLPMPALFKAGSGDSYWTSVQMLQCALPSSFDCTGGRYLI 566

Query: 600  KSGIIHAMDADKYEIQDTLSEIFKSLVEEDGSERAL 707
            +   I   D  +  +   ++E+  S+    G + AL
Sbjct: 567  RQREILEFDFTRDLLPSIINEVAASIFFSQGPKEAL 602


>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
            gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
            subunit [Medicago truncatula]
          Length = 2032

 Score =  195 bits (495), Expect = 1e-47
 Identities = 92/216 (42%), Positives = 143/216 (66%)
 Frame = +3

Query: 60   NIGEAMKLYENIEVGDLINRSLQEGDIEFINRPPSIHKHSIQAMRVFLHPGKTMVINPLI 239
            ++ E  K +  ++ G +++R + +GD  FINRPP+ HKHS+QA+ V++H   T+ INPLI
Sbjct: 469  SLREGSKGHTYLKPGQIVHRRIMDGDTVFINRPPTTHKHSLQALVVYIHDDHTVKINPLI 528

Query: 240  CGPLGGDFDGDCLHTFFPKSLESKAELLQLLSVDKQIFSSHSGEANIVLTVDTLLAAKLI 419
            CGPLG DFDGDC+H F+P+SL +KAE+L+L SV+KQ+ SSHSG  N+ L+ D+LL+ K++
Sbjct: 529  CGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLSADSLLSLKML 588

Query: 420  SQSLFVDKATMAQLAMWALRSVPDPAILSPHNGSSLWTAVQVIQTVLPDNMNLKGNKSLI 599
             +S F+D+    Q+AM+ L  +P PA+L    G S WT++Q++Q  LP + +  G + LI
Sbjct: 589  VKSCFLDRVAANQMAMFLLLPLPMPALLKATTGDSYWTSIQILQCALPFSFDCTGGRYLI 648

Query: 600  KSGIIHAMDADKYEIQDTLSEIFKSLVEEDGSERAL 707
            +   I   D  +  +   ++EI  S+    G + AL
Sbjct: 649  RQREILEFDFTRDILPSIINEIAASIFFSKGPQEAL 684


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  192 bits (489), Expect = 7e-47
 Identities = 92/217 (42%), Positives = 139/217 (64%)
 Frame = +3

Query: 60   NIGEAMKLYENIEVGDLINRSLQEGDIEFINRPPSIHKHSIQAMRVFLHPGKTMVINPLI 239
            ++ E  K +  +  G +++R + +GDI FINRPP+ HKHS+QA+ V++H   T+ INPLI
Sbjct: 443  SLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHTVKINPLI 502

Query: 240  CGPLGGDFDGDCLHTFFPKSLESKAELLQLLSVDKQIFSSHSGEANIVLTVDTLLAAKLI 419
            CGPL  DFDGDC+H F+P+SL +KAE+L+L SV+KQ+ SSHSG  N+ L  D+LL+ K++
Sbjct: 503  CGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQLLSSHSGNLNLQLATDSLLSLKVL 562

Query: 420  SQSLFVDKATMAQLAMWALRSVPDPAILSPHNGSSLWTAVQVIQTVLPDNMNLKGNKSLI 599
             +  F++KA   QL M+   S+P PA+L        WTA+Q++QT LP   +  G +  I
Sbjct: 563  FERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPCWTALQILQTALPSYFDCIGERHWI 622

Query: 600  KSGIIHAMDADKYEIQDTLSEIFKSLVEEDGSERALE 710
                I  +D ++  +Q  ++EI  S+  E G    L+
Sbjct: 623  SKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLK 659


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  192 bits (489), Expect = 7e-47
 Identities = 92/217 (42%), Positives = 139/217 (64%)
 Frame = +3

Query: 60   NIGEAMKLYENIEVGDLINRSLQEGDIEFINRPPSIHKHSIQAMRVFLHPGKTMVINPLI 239
            ++ E  K +  +  G +++R + +GDI FINRPP+ HKHS+QA+ V++H   T+ INPLI
Sbjct: 383  SLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHTVKINPLI 442

Query: 240  CGPLGGDFDGDCLHTFFPKSLESKAELLQLLSVDKQIFSSHSGEANIVLTVDTLLAAKLI 419
            CGPL  DFDGDC+H F+P+SL +KAE+L+L SV+KQ+ SSHSG  N+ L  D+LL+ K++
Sbjct: 443  CGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQLLSSHSGNLNLQLATDSLLSLKVL 502

Query: 420  SQSLFVDKATMAQLAMWALRSVPDPAILSPHNGSSLWTAVQVIQTVLPDNMNLKGNKSLI 599
             +  F++KA   QL M+   S+P PA+L        WTA+Q++QT LP   +  G +  I
Sbjct: 503  FERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPCWTALQILQTALPSYFDCIGERHWI 562

Query: 600  KSGIIHAMDADKYEIQDTLSEIFKSLVEEDGSERALE 710
                I  +D ++  +Q  ++EI  S+  E G    L+
Sbjct: 563  SKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLK 599


>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2082

 Score =  192 bits (487), Expect = 1e-46
 Identities = 91/216 (42%), Positives = 143/216 (66%)
 Frame = +3

Query: 60   NIGEAMKLYENIEVGDLINRSLQEGDIEFINRPPSIHKHSIQAMRVFLHPGKTMVINPLI 239
            ++ E  K +  ++ G +++R + +GDI FINRPP+ HKHS+QA+ V++H   T+ INPLI
Sbjct: 387  SLREGSKGHIYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALYVYIHEDHTVKINPLI 446

Query: 240  CGPLGGDFDGDCLHTFFPKSLESKAELLQLLSVDKQIFSSHSGEANIVLTVDTLLAAKLI 419
            CGPLG DFDGDC+H F+P+SL +KAE+++L SV+ Q+ SSHSG  N+ L+ D+LL+ K++
Sbjct: 447  CGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVENQLLSSHSGNLNLQLSTDSLLSLKML 506

Query: 420  SQSLFVDKATMAQLAMWALRSVPDPAILSPHNGSSLWTAVQVIQTVLPDNMNLKGNKSLI 599
             +  F D+A   QLAM+ L  +P PA+L   +G + WT++Q++Q  LP   +  G + LI
Sbjct: 507  VKRCFFDRAAANQLAMFILLPLPRPALLKASSGDACWTSIQILQCALPLGFDCTGGRYLI 566

Query: 600  KSGIIHAMDADKYEIQDTLSEIFKSLVEEDGSERAL 707
            +   I   +  +  +  T++EI  S+    G + AL
Sbjct: 567  RQSEILEFEFSRDVLPATVNEIAASVFFGKGPKEAL 602


>ref|XP_002299208.2| DNA-directed RNA polymerase alpha subunit family protein [Populus
           trichocarpa] gi|550346661|gb|EEE84013.2| DNA-directed
           RNA polymerase alpha subunit family protein [Populus
           trichocarpa]
          Length = 842

 Score =  192 bits (487), Expect = 1e-46
 Identities = 93/217 (42%), Positives = 142/217 (65%)
 Frame = +3

Query: 60  NIGEAMKLYENIEVGDLINRSLQEGDIEFINRPPSIHKHSIQAMRVFLHPGKTMVINPLI 239
           ++ E  K +  +  G +++R + +GD+ FINRPP+ HKHS+QA+ V++H   T+ INPLI
Sbjct: 303 SLREGSKGHTFLRPGQVVHRRIIDGDVVFINRPPTTHKHSLQALSVYVHDDHTVKINPLI 362

Query: 240 CGPLGGDFDGDCLHTFFPKSLESKAELLQLLSVDKQIFSSHSGEANIVLTVDTLLAAKLI 419
           CGPL  DFDGDC+H F+P+SL +KAE+L+L SV+KQ+ SSHSG  N+ LT D+LL+ K+I
Sbjct: 363 CGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLTTDSLLSLKMI 422

Query: 420 SQSLFVDKATMAQLAMWALRSVPDPAILSPHNGSSLWTAVQVIQTVLPDNMNLKGNKSLI 599
            ++ F+DK+   QLAM+    +P PA+L  +     WTA Q++Q  LP   N  G + LI
Sbjct: 423 FKASFLDKSAAQQLAMFVSPDLPQPALLKVNCIRPYWTAHQILQMALPTCFNCSGERFLI 482

Query: 600 KSGIIHAMDADKYEIQDTLSEIFKSLVEEDGSERALE 710
            +  +  +D ++  +   ++EI  S+  E GS   L+
Sbjct: 483 NNSNVLKVDFNRDVVASMINEILISIFFEKGSGAVLK 519


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2020

 Score =  189 bits (480), Expect = 8e-46
 Identities = 90/217 (41%), Positives = 142/217 (65%)
 Frame = +3

Query: 60   NIGEAMKLYENIEVGDLINRSLQEGDIEFINRPPSIHKHSIQAMRVFLHPGKTMVINPLI 239
            ++ E  K +  ++ G +++R + +GDI FINRPP+ HKHS+QA+ V++H   T+ INPLI
Sbjct: 387  SLREGSKGHIYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALYVYIHEDHTVKINPLI 446

Query: 240  CGPLGGDFDGDCLHTFFPKSLESKAELLQLLSVDKQIFSSHSGEANIVLTVDTLLAAKLI 419
            CGPLG DFDGDC+H F+P+SL +KAE+++L +V+ Q+ SSHSG  N+ L+ D+LLA K++
Sbjct: 447  CGPLGADFDGDCVHLFYPQSLAAKAEVVELFAVENQLLSSHSGNLNLQLSTDSLLALKML 506

Query: 420  SQSLFVDKATMAQLAMWALRSVPDPAILSPHNGSSLWTAVQVIQTVLPDNMNLKGNKSLI 599
             +  F+ +A   QLAM+ L  +P PA+L   +  + WT++Q++Q  LP   +  G + LI
Sbjct: 507  VKRCFLGRAAANQLAMFLLLPLPRPALLKASSDDACWTSIQILQGALPMGFDCTGGRYLI 566

Query: 600  KSGIIHAMDADKYEIQDTLSEIFKSLVEEDGSERALE 710
            +   I   D  +  +  T++EI  S+    G   AL+
Sbjct: 567  RQSEILEFDFSRDALPATINEIAASIFFGKGPMEALK 603


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score =  187 bits (475), Expect = 3e-45
 Identities = 91/227 (40%), Positives = 143/227 (62%), Gaps = 10/227 (4%)
 Frame = +3

Query: 60  NIGEAMKLYENIEVGDLINRSLQEGDIEFINRPPSIHKHSIQAMRVFLHPGKTMVINPLI 239
           ++ E  K +  + +G +++R + +GDI FINRPP+ HKHS+QA+RV++H    + INPL+
Sbjct: 174 SLREGSKGHTFLRLGQMVHRRIMDGDIVFINRPPTTHKHSLQALRVYIHDDHVVKINPLM 233

Query: 240 CGPLGGDFDGDCLHTFFPKSLESKAELLQLLSVDKQIFSSHSGEANIVLTVDTLLAAKLI 419
           CGPL  DFDGDC+H F+P+SL ++AE+L+L SV+KQ+ SSHSG  N+ L+ D+LL+ K +
Sbjct: 234 CGPLAADFDGDCVHLFYPQSLSARAEVLELFSVEKQLLSSHSGNLNLQLSTDSLLSLKTM 293

Query: 420 SQSLFVDKATMAQLAMWALRSVPDPAI----------LSPHNGSSLWTAVQVIQTVLPDN 569
            +  F+D+A+  QLAM+A   +P PA+             H+    WTA QV+QT LP +
Sbjct: 294 FEVYFLDRASANQLAMYASSLLPSPALWKACSSNAKKKKAHSSGPRWTAQQVLQTALPSH 353

Query: 570 MNLKGNKSLIKSGIIHAMDADKYEIQDTLSEIFKSLVEEDGSERALE 710
               G++ LI    I  +D ++  +   +S++  SL      + AL+
Sbjct: 354 FECHGDRLLIHDSEILKLDFNRDIVASVISDVLTSLFFNKSPKDALD 400


>ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Capsella rubella]
            gi|482562261|gb|EOA26451.1| hypothetical protein
            CARUB_v10022497mg [Capsella rubella]
          Length = 1959

 Score =  187 bits (474), Expect = 4e-45
 Identities = 86/226 (38%), Positives = 143/226 (63%)
 Frame = +3

Query: 30   LQLTGMKLSRNIGEAMKLYENIEVGDLINRSLQEGDIEFINRPPSIHKHSIQAMRVFLHP 209
            L  T    + ++ +  K +  ++ G +++R + +GD+ FINRPP+ HKHS+QA+RV++H 
Sbjct: 373  LSYTQGSTTYSLRDGSKGHTELKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHE 432

Query: 210  GKTMVINPLICGPLGGDFDGDCLHTFFPKSLESKAELLQLLSVDKQIFSSHSGEANIVLT 389
              T+ INPL+C PL  DFDGDC+H F+P+SL +KAE+++L SVDKQ+ SSH+G+  + + 
Sbjct: 433  DNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVDKQLLSSHTGQLILQMG 492

Query: 390  VDTLLAAKLISQSLFVDKATMAQLAMWALRSVPDPAILSPHNGSSLWTAVQVIQTVLPDN 569
             D+LL+ +++ + +F+DKAT  QLAM+   S+P PA+         WT  Q++Q   P+ 
Sbjct: 493  CDSLLSLRVMLERVFLDKATAQQLAMYGSLSLPPPALRKSSKSGPAWTVFQILQLAFPER 552

Query: 570  MNLKGNKSLIKSGIIHAMDADKYEIQDTLSEIFKSLVEEDGSERAL 707
            ++ KG++ ++    +   D     +   +SEI  S+  E G + AL
Sbjct: 553  LSCKGDRFMVDGSDLLRFDFGVDVMASIISEIVTSIFLEKGPKEAL 598


>gb|EOY19811.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3
            [Theobroma cacao]
          Length = 1675

 Score =  186 bits (473), Expect = 5e-45
 Identities = 87/216 (40%), Positives = 140/216 (64%)
 Frame = +3

Query: 60   NIGEAMKLYENIEVGDLINRSLQEGDIEFINRPPSIHKHSIQAMRVFLHPGKTMVINPLI 239
            ++ E  K +  +  G +++R + +GDI FINRPP+ HKHS+QA+ V++H   T+ INPLI
Sbjct: 384  SLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHTVKINPLI 443

Query: 240  CGPLGGDFDGDCLHTFFPKSLESKAELLQLLSVDKQIFSSHSGEANIVLTVDTLLAAKLI 419
            CGPL  DFDGDC+H F+P+SL +KAE+ +L SV+KQ+ SSH+G  N+ L  D+LL+ +++
Sbjct: 444  CGPLSADFDGDCIHLFYPQSLAAKAEVFELFSVEKQLLSSHNGNLNLQLATDSLLSLRVM 503

Query: 420  SQSLFVDKATMAQLAMWALRSVPDPAILSPHNGSSLWTAVQVIQTVLPDNMNLKGNKSLI 599
             ++L   KA   QL+M+   ++P PA L  ++    WTA+Q++QT  P  ++  G++ LI
Sbjct: 504  LKTLLFKKADAQQLSMFLSSALPQPAFLKGNSFGPCWTALQILQTAFPACLDCSGDRYLI 563

Query: 600  KSGIIHAMDADKYEIQDTLSEIFKSLVEEDGSERAL 707
                I  +D  +  +Q  ++E+  S+  E G +  L
Sbjct: 564  SKSDILTVDFSRDLMQSVINEVVTSIFFEKGPKEVL 599


>gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
            [Theobroma cacao] gi|508727913|gb|EOY19810.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao]
          Length = 1788

 Score =  186 bits (473), Expect = 5e-45
 Identities = 87/216 (40%), Positives = 140/216 (64%)
 Frame = +3

Query: 60   NIGEAMKLYENIEVGDLINRSLQEGDIEFINRPPSIHKHSIQAMRVFLHPGKTMVINPLI 239
            ++ E  K +  +  G +++R + +GDI FINRPP+ HKHS+QA+ V++H   T+ INPLI
Sbjct: 384  SLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHTVKINPLI 443

Query: 240  CGPLGGDFDGDCLHTFFPKSLESKAELLQLLSVDKQIFSSHSGEANIVLTVDTLLAAKLI 419
            CGPL  DFDGDC+H F+P+SL +KAE+ +L SV+KQ+ SSH+G  N+ L  D+LL+ +++
Sbjct: 444  CGPLSADFDGDCIHLFYPQSLAAKAEVFELFSVEKQLLSSHNGNLNLQLATDSLLSLRVM 503

Query: 420  SQSLFVDKATMAQLAMWALRSVPDPAILSPHNGSSLWTAVQVIQTVLPDNMNLKGNKSLI 599
             ++L   KA   QL+M+   ++P PA L  ++    WTA+Q++QT  P  ++  G++ LI
Sbjct: 504  LKTLLFKKADAQQLSMFLSSALPQPAFLKGNSFGPCWTALQILQTAFPACLDCSGDRYLI 563

Query: 600  KSGIIHAMDADKYEIQDTLSEIFKSLVEEDGSERAL 707
                I  +D  +  +Q  ++E+  S+  E G +  L
Sbjct: 564  SKSDILTVDFSRDLMQSVINEVVTSIFFEKGPKEVL 599