BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00020601
         (2000 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006839002.1| hypothetical protein AMTR_s00002p00271910 [A...   185   7e-44
ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   176   3e-41
ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containi...   176   3e-41
ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containi...   175   6e-41
ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containi...   172   5e-40
ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containi...   172   5e-40
gb|EXB51131.1| hypothetical protein L484_009095 [Morus notabilis]     170   2e-39
ref|XP_002517094.1| pentatricopeptide repeat-containing protein,...   169   4e-39
ref|XP_004298015.1| PREDICTED: pentatricopeptide repeat-containi...   166   5e-38
gb|EOY05751.1| Pentatricopeptide repeat superfamily protein, put...   164   1e-37
gb|EMJ22798.1| hypothetical protein PRUPE_ppa026817mg, partial [...   164   1e-37
gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indi...   164   2e-37
ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group] g...   164   2e-37
gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sat...   164   2e-37
gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza ...   164   2e-37
ref|XP_006650574.1| PREDICTED: pentatricopeptide repeat-containi...   163   3e-37
ref|XP_002315895.2| hypothetical protein POPTR_0010s12490g [Popu...   161   1e-36
ref|XP_006842064.1| hypothetical protein AMTR_s00078p00045650 [A...   160   2e-36
ref|XP_003610755.1| Pentatricopeptide repeat-containing protein ...   160   3e-36
ref|XP_002314678.2| hypothetical protein POPTR_0010s09410g [Popu...   157   1e-35

>ref|XP_006839002.1| hypothetical protein AMTR_s00002p00271910 [Amborella trichopoda]
            gi|548841508|gb|ERN01571.1| hypothetical protein
            AMTR_s00002p00271910 [Amborella trichopoda]
          Length = 569

 Score =  185 bits (469), Expect = 7e-44
 Identities = 116/398 (29%), Positives = 194/398 (48%), Gaps = 14/398 (3%)
 Frame = -2

Query: 1846 VMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKR 1667
            V  V+    ++W   L  F WA +Q+ + ++TE Y+++V ILG  K+FD MW ++EE ++
Sbjct: 139  VNKVLRRYNDDWISALNFFRWASKQVGFVNSTETYDMMVDILGKMKQFDKMWDIVEEMRK 198

Query: 1666 EGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCKLDNSVGTAALNSLIRVLCME---NR 1496
             G L  L T+  + +    AG  +D+++ F  +  L     T+++N ++  LC E    R
Sbjct: 199  IGGLISLSTVSKMMRRLSGAGKWKDTIDVFYGIESLGLRKDTSSMNVVLDTLCKERNVER 258

Query: 1495 KNDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYI 1316
              D  LVL R   + PPN  T+++LIH +C+  +L EA     EM      P + +Y+ +
Sbjct: 259  ARDLFLVLGR---EIPPNAHTFNVLIHGWCKAKRLEEAEWTMREMKGYGFNPCVISYTSL 315

Query: 1315 IKALSANKQTEFAQKLFDHMKA-----------YALRKFGRTPEVGEFLTDTGLLDEGPS 1169
            ++A  +    +  + L + M+A             +  FG+  E  E L     + +   
Sbjct: 316  VEAYCSLHDFQNVEALLNEMEAKGCPPSVVTYTVVMHAFGKAKETQEALRIYERMKKSGC 375

Query: 1168 NFDSKAYDSLIISLSSHGXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFE 989
              D+  Y+SLI  L   G          EM   G TPS  TY+++ S +C   +  EA E
Sbjct: 376  TPDALFYNSLIFILGKAGRLRDARTIFEEMPNNGITPSLTTYNTLISVICEHSQEEEALE 435

Query: 988  LFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLC 809
            +   +  +S  PD++T   L++ FC  G + +   L + M  K    +  ++ + +HGLC
Sbjct: 436  VLREMKESSCKPDIRTYTPLLKMFCKKGRMKVLEYLLHDMIRKDISLDLGTFSLLVHGLC 495

Query: 808  YNSLFEDAFFYFNEMVQNGIVPLFETYRKLLYGLLRGN 695
              S  + A  +F EMV  G+VP + T+R L   L R N
Sbjct: 496  RASKLDGACLFFEEMVIRGLVPKYNTFRILREELDRMN 533


>ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At1g71060, mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  176 bits (446), Expect = 3e-41
 Identities = 117/429 (27%), Positives = 195/429 (45%), Gaps = 37/429 (8%)
 Frame = -2

Query: 1861 LRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLL 1682
            L P  ++ V++ + N   L L  F WA++Q  +KHTTE+Y L++  LG  K+F+++W L+
Sbjct: 120  LSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLV 179

Query: 1681 EEFKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCKLDNSVGTAALNSLIRVLCME 1502
             + KR+G L R +T  +I + Y RA  +++++E+F+++ K    +G +  N L+  LC  
Sbjct: 180  SDMKRKGILSR-ETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKS 238

Query: 1501 NRKNDCSLVLRRLK------------------------------------EKCPPNEMTY 1430
                    V  ++K                                    E   P+ +T+
Sbjct: 239  RNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTF 298

Query: 1429 SILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEFAQKLFDHMKA 1250
             ILI+A C+  K  EA+ +F EM   NI+PS   +  +I  L + K+ + A + F+ +K 
Sbjct: 299  GILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKL 358

Query: 1249 YALRKFGRTPEVGEFLTDTGLLDEGPSNFDSKAYDSLIISLSSHGXXXXXXXXXXEMVKK 1070
                              +G   E P+      Y++++ +               EM K 
Sbjct: 359  ------------------SGFAPEAPT------YNAVVGAYCWSMKMAYAYRMVDEMRKS 394

Query: 1069 GFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATSHF-PDLQTLNTLIETFCSTGHVGI 893
            G  P+S+TY  I  HL + RKS+EA+ +F  +       P L T + +I  FC+   V +
Sbjct: 395  GVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDM 454

Query: 892  AMELWYMMQEKGYGCNRESYCVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKLLY 713
            A+++W  M+ KG       +   I+ LC+    EDA  YF EM+  GI P    +  L  
Sbjct: 455  AIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQ 514

Query: 712  GLLRGNNPD 686
             LL     D
Sbjct: 515  ALLDDGRKD 523


>ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
            mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  176 bits (446), Expect = 3e-41
 Identities = 117/429 (27%), Positives = 195/429 (45%), Gaps = 37/429 (8%)
 Frame = -2

Query: 1861 LRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLL 1682
            L P  ++ V++ + N   L L  F WA++Q  +KHTTE+Y L++  LG  K+F+++W L+
Sbjct: 120  LSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLV 179

Query: 1681 EEFKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCKLDNSVGTAALNSLIRVLCME 1502
             + KR+G L R +T  +I + Y RA  +++++E+F+++ K    +G +  N L+  LC  
Sbjct: 180  SDMKRKGILSR-ETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKS 238

Query: 1501 NRKNDCSLVLRRLK------------------------------------EKCPPNEMTY 1430
                    V  ++K                                    E   P+ +T+
Sbjct: 239  RNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTF 298

Query: 1429 SILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEFAQKLFDHMKA 1250
             ILI+A C+  K  EA+ +F EM   NI+PS   +  +I  L + K+ + A + F+ +K 
Sbjct: 299  GILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKL 358

Query: 1249 YALRKFGRTPEVGEFLTDTGLLDEGPSNFDSKAYDSLIISLSSHGXXXXXXXXXXEMVKK 1070
                              +G   E P+      Y++++ +               EM K 
Sbjct: 359  ------------------SGFAPEAPT------YNAVVGAYCWSMKMAYAYRMVDEMRKS 394

Query: 1069 GFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATSHF-PDLQTLNTLIETFCSTGHVGI 893
            G  P+S+TY  I  HL + RKS+EA+ +F  +       P L T + +I  FC+   V +
Sbjct: 395  GVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDM 454

Query: 892  AMELWYMMQEKGYGCNRESYCVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKLLY 713
            A+++W  M+ KG       +   I+ LC+    EDA  YF EM+  GI P    +  L  
Sbjct: 455  AIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQ 514

Query: 712  GLLRGNNPD 686
             LL     D
Sbjct: 515  ALLDDGRKD 523


>ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
            mitochondrial [Vitis vinifera]
          Length = 535

 Score =  175 bits (444), Expect = 6e-41
 Identities = 109/394 (27%), Positives = 180/394 (45%), Gaps = 11/394 (2%)
 Frame = -2

Query: 1864 SLRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQL 1685
            S+    V  V++   N+W      F WAK Q  Y+H+  +Y  +V ILG  KKFD+MW+L
Sbjct: 116  SVSESLVEQVLKRFSNDWIPAFGFFKWAKAQTGYRHSMNSYNSMVDILGKLKKFDLMWEL 175

Query: 1684 LEEFKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCKLDNSVGTAALNSLIRVLCM 1505
            +EE  R G    L T+  + +   RA   +D++EAF+ + +      T A+N+L+  L  
Sbjct: 176  VEEMDRLGGYVSLATMTKVMRRLARASRWKDAIEAFRGMERFGVKKDTLAMNTLMDALVK 235

Query: 1504 ENRKNDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATY 1325
            EN     + V    K+    N  T+++LIH +C+  K+  AL    EM ++   P + +Y
Sbjct: 236  ENSVEHANDVFVEFKDSILLNPHTFNVLIHGWCKARKMDNALKSMAEMKEHGFCPDVISY 295

Query: 1324 SYIIKALSANKQTEFAQKLFDHMK-----------AYALRKFGRTPEVGEFLTDTGLLDE 1178
            + I++A    K       + + M+              +   G+  E+ + L     +  
Sbjct: 296  TSIVEAYCREKDFRKVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKG 355

Query: 1177 GPSNFDSKAYDSLIISLSSHGXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSRE 998
                 D+  Y SLI  LS  G          +M K+G  P   TY+++ S  C   +  +
Sbjct: 356  SSCVPDTSFYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEED 415

Query: 997  AFELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIH 818
            A +L   +  +S  PDL T + L++  C    + +   L   M +        +Y + +H
Sbjct: 416  ALKLLLKMEESSCKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLEVGTYSLLVH 475

Query: 817  GLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKLL 716
            GLC +   E A  +F EMV  G+VP   T++ LL
Sbjct: 476  GLCKSGKLEHACLFFEEMVSKGLVPKDCTHKLLL 509



 Score = 63.2 bits (152), Expect = 4e-07
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 4/166 (2%)
 Frame = -2

Query: 1753 TEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFK 1574
            T  Y  +++IL  A +      + E+  ++G +  + T   +  +       ED   A K
Sbjct: 362  TSFYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEED---ALK 418

Query: 1573 RLCKLDNSVGTAALNS---LIRVLCMENRKNDCSLVLRRLKEKCPPNEM-TYSILIHAFC 1406
             L K++ S     LN+   L+++ C  NR    S +L  + +     E+ TYS+L+H  C
Sbjct: 419  LLLKMEESSCKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLEVGTYSLLVHGLC 478

Query: 1405 EGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEFAQKL 1268
            +  KL  A   FEEMV   + P   T+  ++K L      E  +++
Sbjct: 479  KSGKLEHACLFFEEMVSKGLVPKDCTHKLLLKELEKKSMVEAKERV 524


>ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
            mitochondrial-like [Cucumis sativus]
          Length = 614

 Score =  172 bits (436), Expect = 5e-40
 Identities = 111/406 (27%), Positives = 184/406 (45%), Gaps = 14/406 (3%)
 Frame = -2

Query: 1894 PEFVPQIKSGS---LRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHI 1724
            PE V +  +G    +    V  +++   N+W      F WAK Q+ Y+H+ E+Y  +V I
Sbjct: 180  PENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQIPYRHSPESYNSMVDI 239

Query: 1723 LGNAKKFDIMWQLLEEFKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCKLDNSVG 1544
            LG AK F +MW+L++E         L+T+  + +   RAG  ++++ AF+ + K   S  
Sbjct: 240  LGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNIEKYGISTD 299

Query: 1543 TAALNSLIRVLCMENRKNDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEE 1364
            T A+N L+  L  E    D   V R LK   P N  ++++LIH +C+  KL EA  I  E
Sbjct: 300  TTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHGYCKAKKLDEAWKIMGE 359

Query: 1363 MVQNNIQPSLATYSYIIKALSANKQTEFAQKLFDHMK-----------AYALRKFGRTPE 1217
            + ++ ++P + +Y+  I+A    K      K+   M+              +   G+  +
Sbjct: 360  VEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQ 419

Query: 1216 VGEFLTDTGLLDEGPSNFDSKAYDSLIISLSSHGXXXXXXXXXXEMVKKGFTPSSKTYSS 1037
            + E L     + +     DS  Y SLI  L   G          +M K+G TP   TY++
Sbjct: 420  INEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNT 479

Query: 1036 IFSHLCRKRKSREAFELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKG 857
            + S  C   +   A  L   +   S  PDL+T + L++ FC    + +   L   M +  
Sbjct: 480  LISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKND 539

Query: 856  YGCNRESYCVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKL 719
                  +Y + + GLC N     A  +F EM+   +VP   T++ L
Sbjct: 540  VSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFKML 585


>ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
            mitochondrial-like [Cucumis sativus]
          Length = 591

 Score =  172 bits (436), Expect = 5e-40
 Identities = 111/406 (27%), Positives = 184/406 (45%), Gaps = 14/406 (3%)
 Frame = -2

Query: 1894 PEFVPQIKSGS---LRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHI 1724
            PE V +  +G    +    V  +++   N+W      F WAK Q+ Y+H+ E+Y  +V I
Sbjct: 157  PENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQIPYRHSPESYNSMVDI 216

Query: 1723 LGNAKKFDIMWQLLEEFKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCKLDNSVG 1544
            LG AK F +MW+L++E         L+T+  + +   RAG  ++++ AF+ + K   S  
Sbjct: 217  LGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNIEKYGISTD 276

Query: 1543 TAALNSLIRVLCMENRKNDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEE 1364
            T A+N L+  L  E    D   V R LK   P N  ++++LIH +C+  KL EA  I  E
Sbjct: 277  TTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHGYCKAKKLDEAWKIMGE 336

Query: 1363 MVQNNIQPSLATYSYIIKALSANKQTEFAQKLFDHMK-----------AYALRKFGRTPE 1217
            + ++ ++P + +Y+  I+A    K      K+   M+              +   G+  +
Sbjct: 337  VEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQ 396

Query: 1216 VGEFLTDTGLLDEGPSNFDSKAYDSLIISLSSHGXXXXXXXXXXEMVKKGFTPSSKTYSS 1037
            + E L     + +     DS  Y SLI  L   G          +M K+G TP   TY++
Sbjct: 397  INEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNT 456

Query: 1036 IFSHLCRKRKSREAFELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKG 857
            + S  C   +   A  L   +   S  PDL+T + L++ FC    + +   L   M +  
Sbjct: 457  LISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKND 516

Query: 856  YGCNRESYCVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKL 719
                  +Y + + GLC N     A  +F EM+   +VP   T++ L
Sbjct: 517  VSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFKML 562


>gb|EXB51131.1| hypothetical protein L484_009095 [Morus notabilis]
          Length = 542

 Score =  170 bits (431), Expect = 2e-39
 Identities = 112/408 (27%), Positives = 186/408 (45%), Gaps = 15/408 (3%)
 Frame = -2

Query: 1894 PEFVPQIKSG---SLRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHI 1724
            PE   Q   G   S+    V  +++   ++W      F WAK Q  YKH+ E Y+L++ I
Sbjct: 109  PEEAAQALDGCGLSVSENTVEQLLKRFSHDWVPAFGVFKWAKLQAGYKHSPELYDLMIDI 168

Query: 1723 LGNAKKFDIMWQLLEEFKR-EGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCKLDNSV 1547
            LG AKKF +MW+L+EE    EG++  L T+    +   R    +++++ F+ + +   S 
Sbjct: 169  LGKAKKFQLMWELIEEMNNLEGYI-SLSTMTKAMRRLARVCMYKEAIDVFRGIERFGLSK 227

Query: 1546 GTAALNSLIRVLCMENRKNDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFE 1367
               ALN+L+  L  E        V   +K+  P N+ +++ILI+ +C   +L +A  I E
Sbjct: 228  DVVALNNLMDALMKEKSVEHAYEVFSEVKKSIPVNDQSFNILINGWCRARQLDKARKIME 287

Query: 1366 EMVQNNIQPSLATYSYIIKALSANKQTEFAQKLFDHMK-----------AYALRKFGRTP 1220
            +M ++  +P   +Y+ ++ A   +K       L D M               +   G+  
Sbjct: 288  DMEKHGFKPDTFSYTCLVDAYCGDKDFRKVYALLDEMNDKGCTPNIVTYTILMHALGKAK 347

Query: 1219 EVGEFLTDTGLLDEGPSNFDSKAYDSLIISLSSHGXXXXXXXXXXEMVKKGFTPSSKTYS 1040
            +V E L     + E     D+  Y+SLI  L   G          +M K+G  P+  TY+
Sbjct: 348  QVNEALKVYEKMKENGCVPDASFYNSLIFILGKAGRLKDAREVFDDMSKQGVAPNGLTYT 407

Query: 1039 SIFSHLCRKRKSREAFELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEK 860
            ++ S +C      EA +L   +   S  PDL T   L++  C    + +   L   M   
Sbjct: 408  TMISCVCDHSLEEEALKLLKKMEEESCKPDLGTYAPLLKMCCKKKRMKVLYFLLNHMFNN 467

Query: 859  GYGCNRESYCVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKLL 716
                +  +Y + I GLC +   E A  +F EMV  G+VP +  Y++LL
Sbjct: 468  DVSIDVGTYSLLITGLCKSGKVEHACSFFEEMVSKGLVPQYSPYKRLL 515


>ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223543729|gb|EEF45257.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 549

 Score =  169 bits (428), Expect = 4e-39
 Identities = 106/412 (25%), Positives = 190/412 (46%), Gaps = 12/412 (2%)
 Frame = -2

Query: 1846 VMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKR 1667
            +  ++    N+W   L  F WAK Q  Y H  + Y+L+V ILG  KKF  MW+L++E + 
Sbjct: 134  ISQLLNRFCNDWVPALGLFTWAKHQTGYVHPPDLYDLMVDILGRRKKFSFMWELVKEMEN 193

Query: 1666 -EGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCKLDNSVGTAALNSLIRVLCMENRKN 1490
             EG++  L T++ + +   RAG+ +D++EAF+ + KL       ALN L+  L  E    
Sbjct: 194  LEGYV-SLVTMKKVMRRLARAGNFQDAVEAFRGIEKLGVRKDIEALNVLMDALVKEGSVE 252

Query: 1489 DCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIK 1310
                     K+    +  +++IL+H +C+  KL +A  I +EM +   QP++ +Y+  I+
Sbjct: 253  HAYSAFMEFKDSIHVDFQSFNILLHGYCKARKLDDARKIMDEMDKQGFQPNVVSYTCFIE 312

Query: 1309 ALSANKQTEFAQKLFDHMKAYA-----------LRKFGRTPEVGEFLTDTGLLDEGPSNF 1163
                 K     + +F  M+  +           +   G+  +V + L    ++       
Sbjct: 313  LYCKLKDFRNVEAIFSEMQEKSCKPNVITYTIFMHALGKAKQVNKALEVYEMMKSNCCVP 372

Query: 1162 DSKAYDSLIISLSSHGXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELF 983
            D+  Y SLI  L+  G          +M K+G +P   TY+++ +  C   +   A +L 
Sbjct: 373  DASFYSSLIFVLTQSGRLKDAWDVFEDMKKQGVSPDLLTYNTMITSACTHLEEENALKLL 432

Query: 982  NIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYN 803
              +   S  PD+QT   L++  C    + +   L   M +     +  +Y + + GLC +
Sbjct: 433  RRMEEDSCKPDIQTYAPLLKMCCRKKRIKVLKFLLNHMFKNNISIDLGTYVLLVGGLCKS 492

Query: 802  SLFEDAFFYFNEMVQNGIVPLFETYRKLLYGLLRGNNPDMLADLSSIVGELE 647
               E A  +F EMV  G++P   TY+ L+  L + N  +    +  ++ + E
Sbjct: 493  GKLELACSFFEEMVMKGLIPRDRTYKMLVEELEQNNLTEAKEKIQKLMFQTE 544


>ref|XP_004298015.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
            mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 573

 Score =  166 bits (419), Expect = 5e-38
 Identities = 111/421 (26%), Positives = 196/421 (46%), Gaps = 18/421 (4%)
 Frame = -2

Query: 1846 VMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKR 1667
            V  V+    N+W   L  F WAK++  Y H  EAY  IV +LG +  F++MW ++EE  R
Sbjct: 156  VQRVLMRFSNDWVPALGFFTWAKRRTGYVHCHEAYNSIVDVLGKSTNFELMWDVVEEMDR 215

Query: 1666 EGFLF-RLKTLEVIFQSYVRAGSIEDSMEAFKRLCKLDNSVGTAALNSLIRVLCMENRKN 1490
             G  +  L+TL  +F+   + G  ++++EAF+ + +   S    ALN+L+  L  E    
Sbjct: 216  IGKGYVSLETLTKVFRRLAKGGKHKEAIEAFRGMERFGLSKDVVALNTLLSALVKERSVE 275

Query: 1489 DCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIK 1310
                     KE  P N+ +++ILIH +C+  K+  A +  EEM ++  +P + +Y+ +++
Sbjct: 276  LAQEAFLEFKESVPVNDHSFNILIHGWCKNRKMDIARSTMEEMERHGFRPDVFSYTCLVE 335

Query: 1309 ALSANKQTEFAQKLFDHMKA--------------YAL---RKFGRTPEVGEFLTDTGLLD 1181
            A  ++K      ++   MK               +AL   R+  +  EV E +   G++ 
Sbjct: 336  AYCSDKDFRKVDEVVSEMKGKGCAPNAVTYTVILHALGKAREITKALEVYEEMKGNGVVP 395

Query: 1180 EGPSNFDSKAYDSLIISLSSHGXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSR 1001
                  D   Y SL+  L   G          +M K+G  P+  TY+++ S  C   +  
Sbjct: 396  ------DVSFYSSLLYILGKAGRLKDVQEVVEDMTKQGVKPNVVTYNTLISCACEHSQEE 449

Query: 1000 EAFELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFI 821
             A +L    +  S  PD++T   L++  C    + +   L   M +     +  +Y + +
Sbjct: 450  GALKLLK-KMEDSCKPDVETYAPLLKMCCRKKRMKVLYFLLDHMFKNDISIDAGTYALLV 508

Query: 820  HGLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKLLYGLLRGNNPDMLADLSSIVGELELK 641
             G+C N   E+A  +F EMV  G VP   TY+ ++  L R +  +   D+  ++ + + K
Sbjct: 509  RGMCKNGKLENASAFFEEMVLKGFVPKDSTYKMMIEELQRKSMEEKKKDIEKLMLQAKEK 568

Query: 640  G 638
            G
Sbjct: 569  G 569


>gb|EOY05751.1| Pentatricopeptide repeat superfamily protein, putative [Theobroma
            cacao]
          Length = 554

 Score =  164 bits (416), Expect = 1e-37
 Identities = 117/413 (28%), Positives = 181/413 (43%), Gaps = 21/413 (5%)
 Frame = -2

Query: 1813 WELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKTLE 1634
            W      F+WAK+Q  Y+HT E Y+ +V ILG AKKFD++  L+ E  +     RL T+ 
Sbjct: 145  WISAYGVFIWAKKQSGYRHTPELYDSMVDILGKAKKFDLVLDLVNEMNQLKGYIRLNTMV 204

Query: 1633 VIFQSYVRAGSIEDSMEAFKRLCKLDNSVGTAALNSLIRVLCMENRKNDCSLVLRRLKEK 1454
             + +   +AG   +++EAF+RL +        ALN L+  L   +       V   LKE 
Sbjct: 205  KVIRRLAKAGRFSEAIEAFRRLEEYGIGKDVVALNGLLDALVKGDGVEHAYEVFVELKEC 264

Query: 1453 CPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEFAQ 1274
             P N  +++ILIH FC+  +L +A  I  EM +   QP + +Y+  I+A    K      
Sbjct: 265  MPLNSSSFNILIHGFCKARRLDDARKILNEMEEYGCQPCVVSYTSFIEAYCHEKDFHNVD 324

Query: 1273 KLFDHMKAYALRK-----------------FGRTPEVGEFLTDTGLLDEGPSNFDSKAYD 1145
             + D MK    R                   G+  EV E + + G L       DS  Y 
Sbjct: 325  AVLDEMKEKGCRPNVVTYTIIMHARGKAGIIGKALEVYEKMKNDGCLP------DSSFYS 378

Query: 1144 SLIISLSSHGXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVAT 965
            SLI  LS  G          +M K+G  P+  TY+++ +  C      +A +L   +   
Sbjct: 379  SLIFILSKSGRLKDADEIFEDMKKQGVRPNVLTYNTMITSACGHSLEEKALKLLQRMEED 438

Query: 964  SHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYNSLFEDA 785
            S  PD+ T   L++  C    + +   L   M       +  +Y + +  LC +   E A
Sbjct: 439  SCKPDISTYGPLLKMCCRKKRMKVLNFLLSHMLNNDVSIDLATYSLLVQRLCNSGKLEQA 498

Query: 784  FFYFNEMVQNGIVPLFETYRKLLYGLLRGNN----PDMLADLSSIVGELELKG 638
              +F EMV  G++P  ++ RK L   L   N     + + +L S + EL   G
Sbjct: 499  CAFFEEMVLKGMIPK-DSIRKTLVEKLEKENMAKAKEQIQELMSNLKELVKTG 550


>gb|EMJ22798.1| hypothetical protein PRUPE_ppa026817mg, partial [Prunus persica]
          Length = 543

 Score =  164 bits (415), Expect = 1e-37
 Identities = 117/446 (26%), Positives = 193/446 (43%), Gaps = 23/446 (5%)
 Frame = -2

Query: 1984 VVAQNDRSTAKQFLQPLSCSAAEKGISVH---LPEFVPQIKSGS---------LRPEFVM 1841
            V AQ  R  +K   +PLS +A    I      L    P +++ +         L    V 
Sbjct: 85   VEAQKLRDPSKAVKRPLSETADTDDIDKVCRILKNGYPSLENAAQALDGCVSDLSNSLVE 144

Query: 1840 SVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREG 1661
             V++   NEW      F+WAK Q  Y+H  EAY  +V ILG ++ F++MW+++EE     
Sbjct: 145  RVLKRFSNEWVPAFGFFIWAKAQTGYRHPPEAYNSMVDILGKSENFELMWEMVEE----- 199

Query: 1660 FLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCKLDNSVGTAALNSLIRVLCMENRKNDCS 1481
                     ++ +   RAG  +++++AF+ + +        +LN+L+  L  E       
Sbjct: 200  ---------MVMRRLARAGRYKEAIDAFRGIERFGVRRDVLSLNTLMGALVKERSVEHAH 250

Query: 1480 LVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALS 1301
             V    KE  P N  T+++LIH +C+  KL  A N  EEM ++   P + +Y+  I+A  
Sbjct: 251  EVFLEFKESIPLNPQTFNVLIHGWCKPRKLDIARNTMEEMEKHGFHPDVLSYTCFIEAYC 310

Query: 1300 ANKQTEFAQKLFDHMKAYA-----------LRKFGRTPEVGEFLTDTGLLDEGPSNFDSK 1154
             +K      ++   MK  A           +   G+  E+ + L     +       D+ 
Sbjct: 311  HDKDFRKVDEVLGEMKDKACEPNTVTYTIIMHALGKAREITKALEVYEKMKRSGCVPDTS 370

Query: 1153 AYDSLIISLSSHGXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIV 974
             Y+SLI  L   G          +M  +G  P + T++++ S  C   +   A +L   +
Sbjct: 371  FYNSLIFLLGKAGRLKDVQEVVEDMTNQGVKPDTLTHNTLISSACAHSQEEAALKLLKNM 430

Query: 973  VATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYNSLF 794
               S  PDL+T   L++ FC    + +   L   M +        +Y + + GLC N   
Sbjct: 431  EEESCKPDLKTYAPLLKLFCRKKRMRVLCFLLDHMFKNDVSIEGGTYALLVRGLCSNGKL 490

Query: 793  EDAFFYFNEMVQNGIVPLFETYRKLL 716
            E+A  +F EMV  G VP   TY  L+
Sbjct: 491  ENACSFFEEMVSKGFVPKDSTYNMLI 516


>gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score =  164 bits (414), Expect = 2e-37
 Identities = 108/389 (27%), Positives = 179/389 (46%), Gaps = 14/389 (3%)
 Frame = -2

Query: 1819 NEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKT 1640
            N+W      F+W   Q  Y H  ++Y+L+V ILG  K+FD+MW L+ +    G L  L T
Sbjct: 1464 NDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMT 1523

Query: 1639 LEVIFQSYVRAGSIEDSMEAFKRLCKLDNSVGTAALNSLIRVLCMENRKNDCSLVLRRLK 1460
            +  + +    A    ++++AF ++ +      T A+N L+  LC E        V + L+
Sbjct: 1524 MTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELR 1583

Query: 1459 EKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEF 1280
               PP+E +++ L+H +C+   L EAL+  EEM Q+   PS+ TY+ +++A    K  + 
Sbjct: 1584 GTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQT 1643

Query: 1279 AQKLFDHMK--------------AYALRKFGRTPEVGEFLTDTGLLDEGPSNFDSKAYDS 1142
               L D M+               +AL K GRT E  +  T   L ++G +  D+  Y+S
Sbjct: 1644 VYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALD--TFDKLKEDGVAP-DASFYNS 1700

Query: 1141 LIISLSSHGXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATS 962
            LI  L   G          EM   G  P+  T++++ S  C   ++  A +L   +   S
Sbjct: 1701 LIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQS 1760

Query: 961  HFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYNSLFEDAF 782
              PD++T   L++  C    V I + L   M  K    +  +Y + +  LC N     + 
Sbjct: 1761 CNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSC 1820

Query: 781  FYFNEMVQNGIVPLFETYRKLLYGLLRGN 695
             +  EMV  G  P  ET+  ++  L + N
Sbjct: 1821 LFLEEMVSKGFAPKQETFDLVMEKLEKRN 1849


>ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
            gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza
            sativa Japonica Group]
          Length = 613

 Score =  164 bits (414), Expect = 2e-37
 Identities = 108/389 (27%), Positives = 179/389 (46%), Gaps = 14/389 (3%)
 Frame = -2

Query: 1819 NEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKT 1640
            N+W      F+W   Q  Y H  ++Y+L+V ILG  K+FD+MW L+ +    G L  L T
Sbjct: 203  NDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMT 262

Query: 1639 LEVIFQSYVRAGSIEDSMEAFKRLCKLDNSVGTAALNSLIRVLCMENRKNDCSLVLRRLK 1460
            +  + +    A    ++++AF ++ +      T A+N L+  LC E        V + L+
Sbjct: 263  MTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELR 322

Query: 1459 EKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEF 1280
               PP+E +++ L+H +C+   L EAL+  EEM Q+   PS+ TY+ +++A    K  + 
Sbjct: 323  GTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQT 382

Query: 1279 AQKLFDHMK--------------AYALRKFGRTPEVGEFLTDTGLLDEGPSNFDSKAYDS 1142
               L D M+               +AL K GRT E  +  T   L ++G +  D+  Y+S
Sbjct: 383  VYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALD--TFDKLKEDGVAP-DASFYNS 439

Query: 1141 LIISLSSHGXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATS 962
            LI  L   G          EM   G  P+  T++++ S  C   ++  A +L   +   S
Sbjct: 440  LIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQS 499

Query: 961  HFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYNSLFEDAF 782
              PD++T   L++  C    V I + L   M  K    +  +Y + +  LC N     + 
Sbjct: 500  CNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSC 559

Query: 781  FYFNEMVQNGIVPLFETYRKLLYGLLRGN 695
             +  EMV  G  P  ET+  ++  L + N
Sbjct: 560  LFLEEMVSKGFAPKQETFDLVMEKLEKRN 588


>gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
            gi|215693326|dbj|BAG88708.1| unnamed protein product
            [Oryza sativa Japonica Group] gi|222625789|gb|EEE59921.1|
            hypothetical protein OsJ_12549 [Oryza sativa Japonica
            Group]
          Length = 554

 Score =  164 bits (414), Expect = 2e-37
 Identities = 108/389 (27%), Positives = 179/389 (46%), Gaps = 14/389 (3%)
 Frame = -2

Query: 1819 NEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKT 1640
            N+W      F+W   Q  Y H  ++Y+L+V ILG  K+FD+MW L+ +    G L  L T
Sbjct: 144  NDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMT 203

Query: 1639 LEVIFQSYVRAGSIEDSMEAFKRLCKLDNSVGTAALNSLIRVLCMENRKNDCSLVLRRLK 1460
            +  + +    A    ++++AF ++ +      T A+N L+  LC E        V + L+
Sbjct: 204  MTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELR 263

Query: 1459 EKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEF 1280
               PP+E +++ L+H +C+   L EAL+  EEM Q+   PS+ TY+ +++A    K  + 
Sbjct: 264  GTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQT 323

Query: 1279 AQKLFDHMK--------------AYALRKFGRTPEVGEFLTDTGLLDEGPSNFDSKAYDS 1142
               L D M+               +AL K GRT E  +  T   L ++G +  D+  Y+S
Sbjct: 324  VYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALD--TFDKLKEDGVAP-DASFYNS 380

Query: 1141 LIISLSSHGXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATS 962
            LI  L   G          EM   G  P+  T++++ S  C   ++  A +L   +   S
Sbjct: 381  LIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQS 440

Query: 961  HFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYNSLFEDAF 782
              PD++T   L++  C    V I + L   M  K    +  +Y + +  LC N     + 
Sbjct: 441  CNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSC 500

Query: 781  FYFNEMVQNGIVPLFETYRKLLYGLLRGN 695
             +  EMV  G  P  ET+  ++  L + N
Sbjct: 501  LFLEEMVSKGFAPKQETFDLVMEKLEKRN 529


>gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score =  164 bits (414), Expect = 2e-37
 Identities = 108/389 (27%), Positives = 179/389 (46%), Gaps = 14/389 (3%)
 Frame = -2

Query: 1819 NEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKT 1640
            N+W      F+W   Q  Y H  ++Y+L+V ILG  K+FD+MW L+ +    G L  L T
Sbjct: 1423 NDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMT 1482

Query: 1639 LEVIFQSYVRAGSIEDSMEAFKRLCKLDNSVGTAALNSLIRVLCMENRKNDCSLVLRRLK 1460
            +  + +    A    ++++AF ++ +      T A+N L+  LC E        V + L+
Sbjct: 1483 MTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELR 1542

Query: 1459 EKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEF 1280
               PP+E +++ L+H +C+   L EAL+  EEM Q+   PS+ TY+ +++A    K  + 
Sbjct: 1543 GTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQT 1602

Query: 1279 AQKLFDHMK--------------AYALRKFGRTPEVGEFLTDTGLLDEGPSNFDSKAYDS 1142
               L D M+               +AL K GRT E  +  T   L ++G +  D+  Y+S
Sbjct: 1603 VYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALD--TFDKLKEDGVAP-DASFYNS 1659

Query: 1141 LIISLSSHGXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATS 962
            LI  L   G          EM   G  P+  T++++ S  C   ++  A +L   +   S
Sbjct: 1660 LIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQS 1719

Query: 961  HFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYNSLFEDAF 782
              PD++T   L++  C    V I + L   M  K    +  +Y + +  LC N     + 
Sbjct: 1720 CNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSC 1779

Query: 781  FYFNEMVQNGIVPLFETYRKLLYGLLRGN 695
             +  EMV  G  P  ET+  ++  L + N
Sbjct: 1780 LFLEEMVSKGFAPKQETFDLVMEKLEKRN 1808


>ref|XP_006650574.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
            mitochondrial-like [Oryza brachyantha]
          Length = 549

 Score =  163 bits (412), Expect = 3e-37
 Identities = 107/389 (27%), Positives = 176/389 (45%), Gaps = 14/389 (3%)
 Frame = -2

Query: 1819 NEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKT 1640
            N+W      F+WA  Q  Y H  ++Y+L+V ILG +K+FD+MW L+ +    G L  L T
Sbjct: 139  NDWVAAFGFFMWAGTQGGYCHCADSYDLMVDILGKSKQFDLMWGLINQMVEVGGLVSLMT 198

Query: 1639 LEVIFQSYVRAGSIEDSMEAFKRLCKLDNSVGTAALNSLIRVLCMENRKNDCSLVLRRLK 1460
            +  + +    A    D+++AF R+ +      T A+N L+  LC E          + L+
Sbjct: 199  MTKVMRRLAGASRWTDAIDAFHRMDRFGVVKDTKAMNVLLDTLCKERSVKRARGAFQELR 258

Query: 1459 EKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEF 1280
               PP+E +++ L+H +C+   L EAL   EEM Q+   PS+ TY+ +++A    K  + 
Sbjct: 259  GTIPPDESSFNTLVHGWCKARMLKEALETMEEMNQHGFSPSVVTYTSLLEAYCMEKDFQT 318

Query: 1279 AQKLFDHMK--------------AYALRKFGRTPEVGEFLTDTGLLDEGPSNFDSKAYDS 1142
               L D M                +AL K GRT E  +      L ++G +  D+  Y+S
Sbjct: 319  VYSLLDEMHKRRCPPNVITYTIVMHALGKAGRTREALDMFDK--LKEDGVAP-DASFYNS 375

Query: 1141 LIISLSSHGXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATS 962
            LI  L   G          EM K G   +  T++++ S  C   ++  A +L   +   S
Sbjct: 376  LIYILGRAGRLEDAYSVVEEMHKTGIPSNVTTFNTLISAACDHSQAENALKLLVKMEEQS 435

Query: 961  HFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYNSLFEDAF 782
              PD++T   L++  C    V   + L   M  K    +  +Y + +  LC N     + 
Sbjct: 436  CKPDIKTYTPLLKLCCKKQWVKTLLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSC 495

Query: 781  FYFNEMVQNGIVPLFETYRKLLYGLLRGN 695
             +  EM+  G  P  ET+  ++  L + N
Sbjct: 496  LFLEEMISKGFTPKLETFDLVMKKLEKRN 524


>ref|XP_002315895.2| hypothetical protein POPTR_0010s12490g [Populus trichocarpa]
            gi|550329653|gb|EEF02066.2| hypothetical protein
            POPTR_0010s12490g [Populus trichocarpa]
          Length = 488

 Score =  161 bits (407), Expect = 1e-36
 Identities = 102/413 (24%), Positives = 195/413 (47%), Gaps = 18/413 (4%)
 Frame = -2

Query: 1870 SGSLRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMW 1691
            S  + P  V   ++ + N   L L  F WA++Q  ++++TE+Y  ++  LG  K+F+++W
Sbjct: 64   SMEVSPSLVFEALKKLSNAGALALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIW 123

Query: 1690 QLLEEFKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCKLDNSVGTAALNSLIRVL 1511
             L+ + K++G L + +T  +I + Y RA  ++++++AF ++ K    + ++ +N L+  L
Sbjct: 124  NLVTDMKQKGLLNK-ETFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTL 182

Query: 1510 CMENRKNDCSLVLRRL-KEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSL 1334
            C   +     LV  ++ K     +  +Y+IL+  + +   LS  + ++ EM     +P +
Sbjct: 183  CKSRQVERAQLVFDKMNKRGFVADIKSYTILLEGWGQEKNLSRLMEVYNEMKDEGFEPDV 242

Query: 1333 ATYSYIIKALSANKQTEFAQKLFDHMKAY-----------------ALRKFGRTPEVGEF 1205
             TY  +I A   +++ + A +LF  M+A                  A ++     E  E 
Sbjct: 243  VTYGILINAHCKSRRYDDAIELFHEMEAKNCKPSPHIYCTLINGLGAEKRLSEALEFFEL 302

Query: 1204 LTDTGLLDEGPSNFDSKAYDSLIISLSSHGXXXXXXXXXXEMVKKGFTPSSKTYSSIFSH 1025
               +G + E P+      Y++++ +               EM K G  PS++TY  I  H
Sbjct: 303  SKASGFVPEAPT------YNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHH 356

Query: 1024 LCRKRKSREAFELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCN 845
            L R  K++ A+ +F  +      P + T   ++  FC+   V +A+++W  M+ KG    
Sbjct: 357  LIRAGKTKIAYSVFQKMSCEGCEPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPV 416

Query: 844  RESYCVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKLLYGLLRGNNPD 686
               +   I+ LC+ S  ++A  YF EM+  GI P  + +  L   LL     D
Sbjct: 417  MHMFSTLINSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNLKQNLLDEGKKD 469


>ref|XP_006842064.1| hypothetical protein AMTR_s00078p00045650 [Amborella trichopoda]
            gi|548844113|gb|ERN03739.1| hypothetical protein
            AMTR_s00078p00045650 [Amborella trichopoda]
          Length = 595

 Score =  160 bits (405), Expect = 2e-36
 Identities = 107/396 (27%), Positives = 185/396 (46%), Gaps = 16/396 (4%)
 Frame = -2

Query: 1870 SGSLRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMW 1691
            +G L  + V  V++   +      R F+WA ++ ++KH+ ++Y ++V ILG+ + F ++W
Sbjct: 126  NGELTTDLVEQVLKRCKDLGNSSHRFFIWAYKRPDFKHSEQSYRILVDILGSNRHFPMIW 185

Query: 1690 QLLEEFKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCKLDNSVGTAALNSLIRVL 1511
             L+   K +GF  + +   V+F+SY RA    D++ AF+R+ +         L+ LI  L
Sbjct: 186  DLVFGMKNDGFEIKRELFWVMFRSYARANLPTDAIRAFRRMEEFGIKPSIDDLDQLIYTL 245

Query: 1510 CMENRKNDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLA 1331
            C     +       + K +   +  +YSILI+ + E     EA ++F EMV+  +   + 
Sbjct: 246  CKHRLVDYAHKFFEKAKFEFAVSSKSYSILINGWGEIGNWVEAESLFHEMVKEKVPLDIV 305

Query: 1330 TYSYIIKALSANKQTEFAQKLFDHMKAYALRKFGRTPEVGEFLTDTGLLDEGPS------ 1169
             Y+ ++ +L  + + ++A KLF  M +Y     G  P+   + T      E         
Sbjct: 306  AYNTLLGSLCKSGKVDYAHKLFREMGSY-----GLVPDAFSYSTFVNAYSEADDVNSAIR 360

Query: 1168 NFDSK----------AYDSLIISLSSHGXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLC 1019
             FDS            Y+SLI  L  +           EM++KG +P   +Y++I +  C
Sbjct: 361  VFDSMRRHNLVPNVYTYNSLIKVLCKNERVDDAYGLLDEMIEKGLSPDLWSYNTILAIHC 420

Query: 1018 RKRKSREAFELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRE 839
              R+  +A  L N +      PD  T N L++     G    A+++W  M+E+G+     
Sbjct: 421  NVREVNKALRLLNRMDRDLCKPDKHTYNMLLKMLILVGRFDRAVKVWNGMEERGFYPAVT 480

Query: 838  SYCVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFET 731
            +Y V IHGLC     EDA  +F  M+  G+ P   T
Sbjct: 481  TYAVMIHGLCKRGRIEDACSHFETMIDEGVPPYTST 516



 Score = 65.1 bits (157), Expect = 1e-07
 Identities = 52/237 (21%), Positives = 94/237 (39%)
 Frame = -2

Query: 1426 ILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEFAQKLFDHMKAY 1247
            ++  ++   N  ++A+  F  M +  I+PS+     +I  L  ++  ++A K F+  K  
Sbjct: 205  VMFRSYARANLPTDAIRAFRRMEEFGIKPSIDDLDQLIYTLCKHRLVDYAHKFFEKAKF- 263

Query: 1246 ALRKFGRTPEVGEFLTDTGLLDEGPSNFDSKAYDSLIISLSSHGXXXXXXXXXXEMVKKG 1067
                        EF               SK+Y  LI      G          EMVK+ 
Sbjct: 264  ------------EFAVS------------SKSYSILINGWGEIGNWVEAESLFHEMVKEK 299

Query: 1066 FTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAM 887
                   Y+++   LC+  K   A +LF  + +    PD  + +T +  +     V  A+
Sbjct: 300  VPLDIVAYNTLLGSLCKSGKVDYAHKLFREMGSYGLVPDAFSYSTFVNAYSEADDVNSAI 359

Query: 886  ELWYMMQEKGYGCNRESYCVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKLL 716
             ++  M+      N  +Y   I  LC N   +DA+   +EM++ G+ P   +Y  +L
Sbjct: 360  RVFDSMRRHNLVPNVYTYNSLIKVLCKNERVDDAYGLLDEMIEKGLSPDLWSYNTIL 416


>ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355512090|gb|AES93713.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  160 bits (404), Expect = 3e-36
 Identities = 109/389 (28%), Positives = 184/389 (47%), Gaps = 12/389 (3%)
 Frame = -2

Query: 1846 VMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKR 1667
            VM V++   N+W      F+WAK+Q  Y H+ E Y L+V ILG AK+FD+MW+L++E KR
Sbjct: 180  VMQVLKRFGNDWVAAYGFFIWAKKQTPYVHSPEVYNLMVDILGKAKEFDLMWKLVKEMKR 239

Query: 1666 -EGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCKLDNSVGTAALNSLIRVLCMENRKN 1490
             EG++  L T+  + + + +A   ED++EAF+ + K      TAALN L+  L       
Sbjct: 240  IEGYVC-LDTMSKVMRRFAKAQRHEDAVEAFRGMGKYGVEKDTAALNKLLDALVKGQSIE 298

Query: 1489 DCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIK 1310
                VL   K   P +  +++ILI+ +C+     +A  + EE  ++  +P + TY+  I+
Sbjct: 299  IAHNVLDEFKSSVPLSSPSFNILINGWCKVRNFEKARKVMEERKEHGFEPDVFTYNNFIE 358

Query: 1309 ALSANKQTEFAQKLFDHMK-----------AYALRKFGRTPEVGEFLTDTGLLDEGPSNF 1163
            +   +K      ++ + M+              L  +G+  ++ + L +   + +     
Sbjct: 359  SYCHDKDFRKVDEVLEEMRGNGCPPNAVTYTILLLGYGKAGQLSKALEEYERMKKDGIVP 418

Query: 1162 DSKAYDSLIISLSSHGXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELF 983
            D+  Y SL+  L   G          +M K+G      TY+++ S  C   K   A  L 
Sbjct: 419  DTPFYSSLMYILGKAGRLKDACEVFDDMPKQGVVRDVVTYNTMISTACAHSKEETALRLL 478

Query: 982  NIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYN 803
              +  TS  PDLQT + L++  C    + +   L   M +     +R +Y + +  L  +
Sbjct: 479  KEMEETSCKPDLQTYHPLLKMCCKKKRMKVLKFLLDHMFKHDLCPDRGTYTLLVQSLSNS 538

Query: 802  SLFEDAFFYFNEMVQNGIVPLFETYRKLL 716
                +A  +F EMV  G  P+ ET  KLL
Sbjct: 539  GKLVEACTFFEEMVSKGFTPM-ETTVKLL 566


>ref|XP_002314678.2| hypothetical protein POPTR_0010s09410g [Populus trichocarpa]
            gi|550329442|gb|EEF00849.2| hypothetical protein
            POPTR_0010s09410g [Populus trichocarpa]
          Length = 553

 Score =  157 bits (398), Expect = 1e-35
 Identities = 102/389 (26%), Positives = 171/389 (43%), Gaps = 11/389 (2%)
 Frame = -2

Query: 1792 FLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKTLEVIFQSYV 1613
            F+WAK Q +Y HT E Y+ ++ ILG  KKF +MW L+E+ K       L T   + +   
Sbjct: 156  FIWAKNQTSYVHTPELYDYMIDILGKFKKFSLMWSLVEQMKGLNGYVSLATASKVMRRLA 215

Query: 1612 RAGSIEDSMEAFKRLCKLDNSVGTAALNSLIRVLCMENRKNDCSLVLRRLKEKCPPNEMT 1433
            +A   +D+++ F+ + K   S    ALN L+  L  E    D        K+    +  +
Sbjct: 216  KARKYKDAIDVFRGIEKYGASKDREALNVLMDALVKEGDVEDAHSAFLEFKDCITLDSSS 275

Query: 1432 YSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEFAQKLFDHMK 1253
            ++ILIH +C+      A  I EEM ++   P + +YS  I A    K     + +FD M+
Sbjct: 276  FNILIHGYCKARMFVVARKIMEEMEKHGFHPDVVSYSCFIAAYCEQKDFRNVEAVFDEMQ 335

Query: 1252 -----------AYALRKFGRTPEVGEFLTDTGLLDEGPSNFDSKAYDSLIISLSSHGXXX 1106
                          +   G+  ++ E L     +       DSK Y SLI  LS  G   
Sbjct: 336  EKGCKPNVITYTTVMHALGKARQLNEALEVYEKMKRNGCLPDSKFYSSLIYVLSQSGRIK 395

Query: 1105 XXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATSHFPDLQTLNTLI 926
                   +M K+G   +   Y+++ S  C   +   A +L   +   S  PD++T   L+
Sbjct: 396  DAWDVFEDMEKQGVCRNLWVYNTMISSACAHSQGGSALKLLERMEGDSCKPDVKTYAPLL 455

Query: 925  ETFCSTGHVGIAMELWYMMQEKGYGCNRESYCVFIHGLCYNSLFEDAFFYFNEMVQNGIV 746
            +  C    + +   L   M +     +  +Y + ++  C N   E A FYF E V  G+V
Sbjct: 456  KMCCRRKSIKLLKFLLSHMFKNNVSVDLGTYTLLVNEFCRNGKLEHACFYFQEAVLKGMV 515

Query: 745  PLFETYRKLLYGLLRGNNPDMLADLSSIV 659
            P+ +T++ L+  L + N  +M   +  ++
Sbjct: 516  PMVKTFKALVEELEQKNMKEMKEKIEKLM 544