BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00020117
         (2412 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi...  1064   0.0  
ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Sela...  1051   0.0  
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A...  1031   0.0  
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...   997   0.0  
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s...   983   0.0  
gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Mor...   982   0.0  
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo...   981   0.0  
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g...   981   0.0  
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S...   980   0.0  
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s...   974   0.0  
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...   973   0.0  
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s...   972   0.0  
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...   972   0.0  
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...   937   0.0  
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s...   936   0.0  
ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Sela...   936   0.0  
gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]          935   0.0  
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu...   926   0.0  
ref|XP_004294640.1| PREDICTED: DNA-directed RNA polymerase III s...   917   0.0  
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [...   915   0.0  

>ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi|162691719|gb|EDQ78080.1|
            predicted protein [Physcomitrella patens]
          Length = 1397

 Score = 1064 bits (2751), Expect = 0.0
 Identities = 544/744 (73%), Positives = 619/744 (83%), Gaps = 5/744 (0%)
 Frame = -1

Query: 2412 LGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARL 2233
            LGKATLGNGNK GLF+VLLRDY   AAA CMNRLAKLSARWIGNHGFSIGIDDV P  RL
Sbjct: 656  LGKATLGNGNKDGLFTVLLRDYGNEAAAVCMNRLAKLSARWIGNHGFSIGIDDVAPSDRL 715

Query: 2232 TAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLR 2053
              +KE+++T+GYN CD+HI LY KGKL LQPGCNAAQTLE+ +TGELNKIRE AG+VC  
Sbjct: 716  NREKEKQITKGYNACDQHIQLYKKGKLELQPGCNAAQTLESAVTGELNKIREAAGNVCKD 775

Query: 2052 ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPA 1873
            ELHWRNSPLIMS+CGSKGS INISQM+ACVGQQSVGG+RAPNGFIDR+LPHFPR+D+ P 
Sbjct: 776  ELHWRNSPLIMSECGSKGSFINISQMVACVGQQSVGGKRAPNGFIDRTLPHFPRHDRTPQ 835

Query: 1872 AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGT 1693
             KGFVANSFY+GL+ATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLS  YDGT
Sbjct: 836  GKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSAQYDGT 895

Query: 1692 VRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKR 1513
            VR+++  IVQ LYGDD MDPV+MEGKDG P NLDR+LMKTKATCP+ G   L  +E+ K 
Sbjct: 896  VRNSSGGIVQLLYGDDGMDPVYMEGKDGAPFNLDRMLMKTKATCPSYGQLGLPPTEIEKL 955

Query: 1512 VDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGLENI 1333
             +ERL+K DM  E     AF+ SL  F++  I +   TR  LGL  + N  PD   LE+ 
Sbjct: 956  FNERLTKPDMTSET--VGAFKTSLKKFMDSCIKDNISTRTKLGLPLDCNGGPDQTLLEST 1013

Query: 1332 ALDICGFTARQLE-----VFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFH 1168
            A  I G T+RQLE     VFL+TCIKRYH KR+E GAAVGA+GAQSIGEPGTQMTLKTFH
Sbjct: 1014 ATYISGLTSRQLEICLLQVFLDTCIKRYHMKRVEPGAAVGAVGAQSIGEPGTQMTLKTFH 1073

Query: 1167 FAGVASMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVA 988
            FAGVASMN+TLGVPRIKEIINA+KNISTPIITA L+S ND KAARIVKGRIEKT LGEVA
Sbjct: 1074 FAGVASMNITLGVPRIKEIINASKNISTPIITAVLVSGNDEKAARIVKGRIEKTTLGEVA 1133

Query: 987  KSIKTVLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKL 808
            KSIKTVL+  QA ISVKLDM+ I++LQL+I + TVA +I++TPK+K+K  N+R++D +KL
Sbjct: 1134 KSIKTVLRASQAIISVKLDMKRIDALQLDINSDTVALAIVQTPKIKLKHVNIRIVDRDKL 1193

Query: 807  HIFPPEADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDKGKYNLLVEGTNLAAVMG 628
             + PP+ D+ K+YF LHSL N LPKVIVKGI +VERAVIN++KG YNLLVEGTNL AVMG
Sbjct: 1194 IVIPPDQDKGKLYFYLHSLCNMLPKVIVKGIPSVERAVINKEKGVYNLLVEGTNLKAVMG 1253

Query: 627  TQGVDGINTKSNHVIEIEQTLGIEAARKCIIDEIQYTMASHGMSIDLRHMMLLADVMTFK 448
              GV+G  TKSNHVIE EQTLGIEAAR  IIDEIQYTM SHGM+ID RHMMLLADVMT+K
Sbjct: 1254 ISGVNGKLTKSNHVIEAEQTLGIEAARNVIIDEIQYTMGSHGMTIDARHMMLLADVMTYK 1313

Query: 447  GQVLGITRFGIAKMKDSVLMLASFEKTTDHLFDASVHGRVDQIEGVSECXXXXXXXXXGT 268
            G+VLGITRFGIAKMKDSVLMLASFEKTTDHLFDA++HGRVD+IEGVSEC         GT
Sbjct: 1314 GEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAIHGRVDKIEGVSECIIMGIPMPIGT 1373

Query: 267  GLLKVRQRVDHLPKLEYAPSSLIS 196
            GL K+RQ+V+ LPKL Y P+ L+S
Sbjct: 1374 GLFKIRQKVEKLPKLSYGPTPLLS 1397


>ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
            gi|300146624|gb|EFJ13293.1| hypothetical protein
            SELMODRAFT_446351 [Selaginella moellendorffii]
          Length = 1393

 Score = 1051 bits (2719), Expect = 0.0
 Identities = 543/744 (72%), Positives = 612/744 (82%), Gaps = 5/744 (0%)
 Frame = -1

Query: 2412 LGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARL 2233
            LGK TLGNG+K GLF+VLLRDY   AAASCMNRLAKLSARWIGNHGFSIGIDDVQPG+RL
Sbjct: 659  LGKGTLGNGSKDGLFTVLLRDYGEQAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGSRL 718

Query: 2232 TAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLR 2053
            T +KE+R+ EGY  CDKHI L+NKG+L LQPGC+AAQTLE+EITGELNKIRE AG VC+ 
Sbjct: 719  TVEKEKRIAEGYRACDKHISLFNKGQLTLQPGCDAAQTLESEITGELNKIREAAGQVCVN 778

Query: 2052 ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPA 1873
            ELHWRNSPLIMSQCGSKGS INISQMIACVGQQSV G RAPNGFI+RSLPHFPRNDK P 
Sbjct: 779  ELHWRNSPLIMSQCGSKGSVINISQMIACVGQQSVSGHRAPNGFIERSLPHFPRNDKTPQ 838

Query: 1872 AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGT 1693
            AKGFVANSFY+GLTATEF FHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLS  YDGT
Sbjct: 839  AKGFVANSFYSGLTATEFIFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSCQYDGT 898

Query: 1692 VRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKR 1513
            VR+++  IVQ +YGDD+MDPV MEG++G PLNLDR+LMK KATCP   +PAL  SEL K 
Sbjct: 899  VRNSSGVIVQLIYGDDSMDPVSMEGQNGTPLNLDRVLMKAKATCPRGTTPALPPSELWKI 958

Query: 1512 VDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKT--RLTLGLSEEKNNDPDLAGLE 1339
            V+ + S    Q  + CS AF +SL  FL K    +  T  RL+L L +  N D      E
Sbjct: 959  VESKFS----QDGSECSTAFLDSLRKFLRKEFDTISSTRKRLSLPLDDFGNVDD-----E 1009

Query: 1338 NIALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAG 1159
            N+A ++ G T+RQLEVFL TCI RYH K+++ G AVGAIGAQSIGEPGTQMTLKTFHFAG
Sbjct: 1010 NVAANVSGLTSRQLEVFLNTCIGRYHRKKLDPGTAVGAIGAQSIGEPGTQMTLKTFHFAG 1069

Query: 1158 VASMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSI 979
            VASMN+TLGVPRIKEIINA+K ISTPIITAKL+S+NDVKAARIVKGRIEKT LG+VAKSI
Sbjct: 1070 VASMNITLGVPRIKEIINASKKISTPIITAKLVSENDVKAARIVKGRIEKTALGDVAKSI 1129

Query: 978  KTVLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPK---LKIKQQNLRVLDHEKL 808
            K VL+P QAF+S+KLDM  I SLQL+I A TVAE++LK PK   +K+K+Q+++V D   +
Sbjct: 1130 KIVLRPGQAFVSIKLDMDRIYSLQLDIRAETVAEAVLKFPKIKSMKLKEQHVKVNDDRSI 1189

Query: 807  HIFPPEADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDKGKYNLLVEGTNLAAVMG 628
             +  PE+DR K+ FALHSL+N LPKVIVKGI TVERAVINQ+KGKYNLLVEGTNL AVMG
Sbjct: 1190 SLTTPESDRKKMLFALHSLQNMLPKVIVKGIPTVERAVINQEKGKYNLLVEGTNLKAVMG 1249

Query: 627  TQGVDGINTKSNHVIEIEQTLGIEAARKCIIDEIQYTMASHGMSIDLRHMMLLADVMTFK 448
            T+GVDG  T SNH+ E  + LGIEAAR  II EIQYTM SHGMSID RHMMLLADVMT++
Sbjct: 1250 TEGVDGRETTSNHIFETVEVLGIEAARNGIIKEIQYTMGSHGMSIDQRHMMLLADVMTYR 1309

Query: 447  GQVLGITRFGIAKMKDSVLMLASFEKTTDHLFDASVHGRVDQIEGVSECXXXXXXXXXGT 268
            G++LGITRFG+AKMKDSVLMLASFEKTTDHLF ASVHGR DQIEGVSEC         GT
Sbjct: 1310 GEILGITRFGMAKMKDSVLMLASFEKTTDHLFAASVHGRTDQIEGVSECIIMGIPMPLGT 1369

Query: 267  GLLKVRQRVDHLPKLEYAPSSLIS 196
            GL KVRQ+V  +PKL Y P  L S
Sbjct: 1370 GLFKVRQKVGRIPKLIYGPPPLFS 1393


>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
            gi|548832896|gb|ERM95665.1| hypothetical protein
            AMTR_s00023p00196820 [Amborella trichopoda]
          Length = 1383

 Score = 1031 bits (2667), Expect = 0.0
 Identities = 526/742 (70%), Positives = 606/742 (81%), Gaps = 4/742 (0%)
 Frame = -1

Query: 2412 LGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARL 2233
            LGKATLGNGNK GLFSVLLRDYN++AAASCMNRLAKLSARWIGNHGFSIGIDDV PG+ L
Sbjct: 641  LGKATLGNGNKDGLFSVLLRDYNSHAAASCMNRLAKLSARWIGNHGFSIGIDDVLPGSHL 700

Query: 2232 TAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLR 2053
            T +KEE++  GY+ CD  ID Y+KGKL+L+PGCNAAQTLEAEIT  LN IR+ A  VC+ 
Sbjct: 701  TKQKEEQIKGGYSNCDAFIDAYDKGKLSLKPGCNAAQTLEAEITRVLNGIRDAAAKVCME 760

Query: 2052 ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPA 1873
            ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDK PA
Sbjct: 761  ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPA 820

Query: 1872 AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGT 1693
            AKGFVANSFYTGLTA EFFFHTMGGREGLVDTAVKTA+TGY+SRRL+K+LEDLSTHYD T
Sbjct: 821  AKGFVANSFYTGLTAAEFFFHTMGGREGLVDTAVKTADTGYLSRRLIKSLEDLSTHYDDT 880

Query: 1692 VRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKR 1513
            VR+++  I+QF YGDD MDP  MEGK G PLNLDRL MK KATCPA+ S +LS SE+S  
Sbjct: 881  VRNSSGTIIQFSYGDDGMDPAKMEGKSGVPLNLDRLFMKIKATCPASVSASLSPSEISTI 940

Query: 1512 VDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGLENI 1333
            V++RLSK+DM PE GCS AF+  L NF++K +  +KKTR  LGL E+  +    +GLE++
Sbjct: 941  VNDRLSKHDMTPERGCSMAFKEELSNFIKKRMDAIKKTRNMLGLDEDCVDKEKFSGLEHV 1000

Query: 1332 ALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVA 1153
            A +I G + +QL VFLETCI RYH KR+EAG A+GAIGAQSIGEPGTQMTLKTFHFAGVA
Sbjct: 1001 AANISGISRQQLRVFLETCISRYHLKRIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 1060

Query: 1152 SMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKT 973
            SMN+TLGVPRIKEI+ A+K ISTPIITA L+ DND K+ARIVKGRIEKT+LGEVAK++K 
Sbjct: 1061 SMNITLGVPRIKEILGASKKISTPIITATLVCDNDEKSARIVKGRIEKTLLGEVAKTVKI 1120

Query: 972  VLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLD----HEKLH 805
             + P QA I++ LDM+ IE+LQ+ I A TVA+SI +  K K+ +  L+V       +KL 
Sbjct: 1121 SVTPTQASINITLDMKRIEALQMAIDAKTVADSISENLKAKVSRTKLKVKPTFTLPDKLK 1180

Query: 804  IFPPEADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDKGKYNLLVEGTNLAAVMGT 625
            I  PE  R ++ ++LH L++ LPK+IVKGI TVERAVIN  KGK NLLVEGTNL AVMGT
Sbjct: 1181 ILLPEIGRKEVLYSLHLLQSLLPKIIVKGIPTVERAVINNVKGKLNLLVEGTNLLAVMGT 1240

Query: 624  QGVDGINTKSNHVIEIEQTLGIEAARKCIIDEIQYTMASHGMSIDLRHMMLLADVMTFKG 445
             GVDG NT SNH++E+E TLGIEAARK IIDEIQYTM SHGMSIDLRHMMLLAD+MTF+G
Sbjct: 1241 PGVDGRNTTSNHIVEVEGTLGIEAARKSIIDEIQYTMKSHGMSIDLRHMMLLADLMTFRG 1300

Query: 444  QVLGITRFGIAKMKDSVLMLASFEKTTDHLFDASVHGRVDQIEGVSECXXXXXXXXXGTG 265
             VLGI RFGI KMK+SVLMLASFE+T D LFDA+  GRVD I GVSEC         GTG
Sbjct: 1301 LVLGIQRFGITKMKESVLMLASFERTADILFDATTRGRVDTIAGVSECIIMGVPMQIGTG 1360

Query: 264  LLKVRQRVDHLPKLEYAPSSLI 199
            +L V+QR + L KL Y P  +I
Sbjct: 1361 ILSVQQRPEQLAKLTYGPDPII 1382


>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score =  997 bits (2578), Expect = 0.0
 Identities = 519/740 (70%), Positives = 595/740 (80%), Gaps = 1/740 (0%)
 Frame = -1

Query: 2412 LGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARL 2233
            LGKATLGNGNK GLFSVLLRDYNA+AAA+CMNRLAKLSARWIGNHGFSIGIDDVQPG  L
Sbjct: 647  LGKATLGNGNKDGLFSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLL 706

Query: 2232 TAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLR 2053
              +K +R+ EGY  C + I  YNKGKL LQPGCNAAQTLEAEITG LNKIRE   +VC+ 
Sbjct: 707  NDQKSKRIEEGYENCHELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCME 766

Query: 2052 ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPA 1873
            ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDR+LPHFPR  K P 
Sbjct: 767  ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPD 826

Query: 1872 AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGT 1693
            AKGFVA+SFYTGLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRLMKALEDLS  YD T
Sbjct: 827  AKGFVASSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIQYDET 886

Query: 1692 VRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKR 1513
            VR+AN +IVQFLYGDD MDP  MEGKDG PLN +RL +K KATCPA  + +LS  ++ + 
Sbjct: 887  VRNANGSIVQFLYGDDGMDPARMEGKDGFPLNFNRLFLKVKATCPAGENASLSALQIEET 946

Query: 1512 VDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGLENI 1333
            V +RL +++   E GCS AF+ +L  FLE+     K TR  LGL  E   + +L   E  
Sbjct: 947  V-KRLKEHNTSAE-GCSDAFKTNLSGFLEECKEKFKNTREALGLHGEHVGEENLDIQEKF 1004

Query: 1332 ALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVA 1153
            A +I G T++QL+VFL+TCI RY  KR+EAG A+GAIGA SIGEPGTQMTLKTFHFAGVA
Sbjct: 1005 AKNISGITSKQLQVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVA 1064

Query: 1152 SMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKT 973
            SMNVTLGVPRIKEIIN AK ISTPIITA L  +N+VK AR+VKGRIE+T LG+VAKSIK 
Sbjct: 1065 SMNVTLGVPRIKEIINGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKI 1124

Query: 972  VLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIFPP 793
            VL    A I+V LDM  I++ QL I +  V ESIL+  ++K+KQQ+++VLD  KL +  P
Sbjct: 1125 VLTSRLALIAVALDMEGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEVH-P 1183

Query: 792  EADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQD-KGKYNLLVEGTNLAAVMGTQGV 616
            + DR  I+F LH+L+N LP V+VKGI TVERAVIN+D K KYNLLVEGT L  VMGT+GV
Sbjct: 1184 QGDRSTIHFELHALKNLLPTVVVKGIETVERAVINKDNKVKYNLLVEGTGLQTVMGTEGV 1243

Query: 615  DGINTKSNHVIEIEQTLGIEAARKCIIDEIQYTMASHGMSIDLRHMMLLADVMTFKGQVL 436
             G  T SNH+IE++QTLGIEAARKCII+EIQYTMASHGMSID+RHMMLLAD+MTF+G+VL
Sbjct: 1244 IGRETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEVL 1303

Query: 435  GITRFGIAKMKDSVLMLASFEKTTDHLFDASVHGRVDQIEGVSECXXXXXXXXXGTGLLK 256
            GITRFGI KM  SVLMLASFEKT DHLF+ASV GR D+IEGVSEC         GTG+LK
Sbjct: 1304 GITRFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILK 1363

Query: 255  VRQRVDHLPKLEYAPSSLIS 196
            VRQR+  +P+L Y    +IS
Sbjct: 1364 VRQRLQQVPELSYGLDPIIS 1383


>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Setaria
            italica]
          Length = 1397

 Score =  983 bits (2540), Expect = 0.0
 Identities = 502/744 (67%), Positives = 595/744 (79%), Gaps = 5/744 (0%)
 Frame = -1

Query: 2412 LGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARL 2233
            +GKATLGNGNK G++SVLLRDYN++AAASCMNRLAK SAR+IGNHGFSIG+DDVQPG  L
Sbjct: 654  VGKATLGNGNKDGIYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHL 713

Query: 2232 TAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLR 2053
              +K++++ EGY +C   I L+ KG L L PGCNAAQTLE +ITG LN+IR  AG+VC+ 
Sbjct: 714  NRQKKKKIDEGYKQCHDLISLFAKGALALHPGCNAAQTLEHKITGVLNEIRTAAGNVCMD 773

Query: 2052 ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPA 1873
             LHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFIDR+LPHFP N K PA
Sbjct: 774  TLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRTLPHFPINSKTPA 833

Query: 1872 AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGT 1693
            AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS  YD T
Sbjct: 834  AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQT 893

Query: 1692 VRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKR 1513
            VR+A+  IVQFLYGDD MDP  MEGKDG PLNLD+L MK  ATCP  G   LS  ++ + 
Sbjct: 894  VRNASGGIVQFLYGDDGMDPAKMEGKDGTPLNLDQLFMKVTATCPHRGLDTLSPDDIKQM 953

Query: 1512 VDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGLENI 1333
            ++++L+++    + GCS  F+  L  FLE+ I  +K TR  L L E+     D    E I
Sbjct: 954  LEDKLTQHKTSSDGGCSEEFKECLKKFLEERIQLLKCTRKALHLDEKHVGKNDSCIEEII 1013

Query: 1332 ALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVA 1153
            A +I G +A+QL+VFL+TC  RY+SK +EAGA++GAIGAQSIGEPGTQMTLKTFHFAGVA
Sbjct: 1014 AANISGISAKQLQVFLDTCFSRYNSKAIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVA 1073

Query: 1152 SMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKT 973
            SMNVTLGVPRIKEIINAAK ISTPIIT +L+S  DV +ARIVKG +EK VLGEVA +IK 
Sbjct: 1074 SMNVTLGVPRIKEIINAAKKISTPIITTELLSRKDVLSARIVKGAMEKAVLGEVASAIKI 1133

Query: 972  VLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIFPP 793
            VLK  Q  + VKLDM++IE+L + I+A +V  SIL  PK+K+K +++RV+D  KL I+P 
Sbjct: 1134 VLKSSQPNLVVKLDMQLIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRIYPA 1193

Query: 792  EADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDK-----GKYNLLVEGTNLAAVMG 628
              D+ K+   LH+L+  LPKVIVKGI TVER VI++ K      KYNLLVEGTNL AVMG
Sbjct: 1194 GTDKSKLQLELHNLKAMLPKVIVKGIPTVERVVIDERKKEGKLEKYNLLVEGTNLLAVMG 1253

Query: 627  TQGVDGINTKSNHVIEIEQTLGIEAARKCIIDEIQYTMASHGMSIDLRHMMLLADVMTFK 448
            T GVD  NTKSNH++E+  TLGIEAAR+ IIDEIQYTM SHGM+ID+RHMMLLAD+MT+K
Sbjct: 1254 TPGVDARNTKSNHIMEMNSTLGIEAARRSIIDEIQYTMKSHGMNIDVRHMMLLADLMTYK 1313

Query: 447  GQVLGITRFGIAKMKDSVLMLASFEKTTDHLFDASVHGRVDQIEGVSECXXXXXXXXXGT 268
            G+VLGITR+GIAKMK SVLMLASFEKT++HLF+AS  GR D+IEGVSEC         GT
Sbjct: 1314 GEVLGITRYGIAKMKTSVLMLASFEKTSEHLFNASYSGREDEIEGVSECIIMGIPMQLGT 1373

Query: 267  GLLKVRQRVDHLPKLEYAPSSLIS 196
            G+LKVRQR+DHLP+L+Y P  ++S
Sbjct: 1374 GILKVRQRLDHLPELKYQPDPILS 1397


>gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
          Length = 1179

 Score =  982 bits (2539), Expect = 0.0
 Identities = 502/746 (67%), Positives = 589/746 (78%), Gaps = 7/746 (0%)
 Frame = -1

Query: 2412 LGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARL 2233
            LGK TLGNGNK GL+S+LLRDY A+AAA+CMNRLAKLSARWIGNHGFSIGIDDVQP  +L
Sbjct: 433  LGKGTLGNGNKDGLYSILLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSDKL 492

Query: 2232 TAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLR 2053
              +K++++ EG   CD  I  Y +G L  +PGC+AAQ+LEA ITG LNKIRE  G +C++
Sbjct: 493  RDEKDQKINEGAKDCDDKIKSYKEGNLPPEPGCDAAQSLEAVITGILNKIREETGKLCMK 552

Query: 2052 ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPA 1873
             L WRNSPLIMSQCGSKGS INISQM+ACVGQQSVGGRRAPNGFIDRSLPHFPR DK PA
Sbjct: 553  ALPWRNSPLIMSQCGSKGSLINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKDKTPA 612

Query: 1872 AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGT 1693
            AKGFV++SFY GL+ATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+KALEDL  HYD T
Sbjct: 613  AKGFVSHSFYDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLFVHYDNT 672

Query: 1692 VRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKR 1513
            VR+A++ I+QF YGDD MDP HMEGK+G PLN +RL +K KATCPA G+  LS  ++S+ 
Sbjct: 673  VRNASACIIQFCYGDDGMDPAHMEGKNGAPLNFERLFLKAKATCPAGGTEKLSPEKVSEL 732

Query: 1512 VDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGLENI 1333
            V+ RLSK DM PE GCSAAF+NSL +FL+ Y+   K+T      +E      + A  +NI
Sbjct: 733  VESRLSKKDMTPEGGCSAAFKNSLKSFLDNYVKAFKRTWDPCESTEGHAKMENSATTKNI 792

Query: 1332 ALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVA 1153
             L + G TARQLEVFL+TCI RYHSK++EAG A+GAIGAQSIGEPGTQMTLKTFHFAGVA
Sbjct: 793  VLQLSGATARQLEVFLDTCISRYHSKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 852

Query: 1152 SMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKT 973
            SMNVTLGVPRIKEIIN AK ISTPIITA L  DN+V  ARIV+GRIEK  LG+VAKSIKT
Sbjct: 853  SMNVTLGVPRIKEIINGAKKISTPIITAILECDNNVNFARIVRGRIEKISLGQVAKSIKT 912

Query: 972  VLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIFPP 793
            V+    A + + LDM  I+   L I A  V +SIL+TP++K+K++++RVLD +KL I P 
Sbjct: 913  VMTSRVASVVITLDMERIQDALLSIDANVVRDSILQTPRIKLKKEHIRVLDFKKLEILPY 972

Query: 792  EADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDKG-------KYNLLVEGTNLAAV 634
            E++R K+Y  L  L   L  ++VKGI TVERAVI+ +K        KY LLVEGT L  V
Sbjct: 973  ESNRSKLYHHLQFLAKMLQNILVKGIKTVERAVISSEKDKKTDISKKYKLLVEGTGLLGV 1032

Query: 633  MGTQGVDGINTKSNHVIEIEQTLGIEAARKCIIDEIQYTMASHGMSIDLRHMMLLADVMT 454
            MGT+GVDG NTK+NH+IE++QTLGIEAAR CIIDEI+YTM SHGMSID RHMMLLADVMT
Sbjct: 1033 MGTEGVDGRNTKTNHIIEVQQTLGIEAARTCIIDEIEYTMKSHGMSIDTRHMMLLADVMT 1092

Query: 453  FKGQVLGITRFGIAKMKDSVLMLASFEKTTDHLFDASVHGRVDQIEGVSECXXXXXXXXX 274
             +G+VLGITRFGI KM  SVLMLASFEKT DHLF+ASV+GR D+IEGVSEC         
Sbjct: 1093 SRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGREDKIEGVSECIIMGIPMQI 1152

Query: 273  GTGLLKVRQRVDHLPKLEYAPSSLIS 196
            GTG++KVRQRVD  P L Y P  ++S
Sbjct: 1153 GTGMIKVRQRVDVPPMLSYGPKPILS 1178


>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
          Length = 1321

 Score =  981 bits (2537), Expect = 0.0
 Identities = 499/743 (67%), Positives = 594/743 (79%), Gaps = 4/743 (0%)
 Frame = -1

Query: 2412 LGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARL 2233
            +GKATLGNGNK G+FS L+RDYN++AAASCMNRLAK SAR+IGNHGFSIG+DDVQPG  L
Sbjct: 579  VGKATLGNGNKDGMFSTLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHL 638

Query: 2232 TAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLR 2053
              +K+ ++  GY  C   I  Y+KG L LQPGCNAAQTLE  IT  LN+IRE AG VC+ 
Sbjct: 639  NQEKKMKIDGGYKDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCMN 698

Query: 2052 ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPA 1873
             LHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAPNGFIDR+LPHFP N K PA
Sbjct: 699  TLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPA 758

Query: 1872 AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGT 1693
            AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS  YD T
Sbjct: 759  AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQT 818

Query: 1692 VRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKR 1513
            VR+A+  IVQFLYGDD MDP  MEGKDG+PLNLD+L MK  ATCP  G   LS  E+ + 
Sbjct: 819  VRNASGGIVQFLYGDDGMDPAKMEGKDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQI 878

Query: 1512 VDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGLENI 1333
            ++++LS++D   + GCS  F+  L  FLE  I  +K TR  L L E+   +   +  E+I
Sbjct: 879  LNDKLSEHDASSDDGCSEKFKQLLTYFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESI 938

Query: 1332 ALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVA 1153
            A +I G + +QL+VFL+TC+ RYH K++EAGA++GAIGAQSIGEPGTQMTLKTFHFAGVA
Sbjct: 939  AANISGISVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVA 998

Query: 1152 SMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKT 973
            SMNVTLGVPRIKEIINAAK ISTPIITA+L+S+ DV +ARIVKG +EK VLGEVA++IK 
Sbjct: 999  SMNVTLGVPRIKEIINAAKKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKI 1058

Query: 972  VLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIFPP 793
            VLK  Q  + VKLDM+ IE+L + I+A +V  SIL  PK+K+K +++RV+D  KL I+P 
Sbjct: 1059 VLKSSQPNLVVKLDMQRIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLRIYPA 1118

Query: 792  EADRLKIYFALHSLRNKLPKVIVKGISTVERAVIN----QDKGKYNLLVEGTNLAAVMGT 625
              D+ K+ + LH L++ LPKVIVKGI TVERAVI+    ++  +Y LLVEGTNL AVMGT
Sbjct: 1119 GIDKSKLLYELHHLKSMLPKVIVKGIPTVERAVISETGEENDKRYKLLVEGTNLLAVMGT 1178

Query: 624  QGVDGINTKSNHVIEIEQTLGIEAARKCIIDEIQYTMASHGMSIDLRHMMLLADVMTFKG 445
             GVD + TKSNH++E+ +TLGIEAAR+ IIDEIQYTM SHGM+ID RHMMLLAD+MT+KG
Sbjct: 1179 PGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKG 1238

Query: 444  QVLGITRFGIAKMKDSVLMLASFEKTTDHLFDASVHGRVDQIEGVSECXXXXXXXXXGTG 265
            ++LGITR+GIAKMK SVLMLASFEKT +HLF+AS  GR DQIEGVSEC         GTG
Sbjct: 1239 EILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTG 1298

Query: 264  LLKVRQRVDHLPKLEYAPSSLIS 196
            +LKVRQR+DHLP+ +Y P  +++
Sbjct: 1299 ILKVRQRLDHLPEFKYQPDPILA 1321


>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
            gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
            Japonica Group] gi|38347455|emb|CAD41360.2|
            OSJNBa0076N16.24 [Oryza sativa Japonica Group]
            gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
            Japonica Group] gi|116310339|emb|CAH67354.1|
            OSIGBa0130B08.14 [Oryza sativa Indica Group]
            gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
            Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|218195112|gb|EEC77539.1| hypothetical protein
            OsI_16437 [Oryza sativa Indica Group]
          Length = 1383

 Score =  981 bits (2537), Expect = 0.0
 Identities = 499/743 (67%), Positives = 594/743 (79%), Gaps = 4/743 (0%)
 Frame = -1

Query: 2412 LGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARL 2233
            +GKATLGNGNK G+FS L+RDYN++AAASCMNRLAK SAR+IGNHGFSIG+DDVQPG  L
Sbjct: 641  VGKATLGNGNKDGMFSTLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHL 700

Query: 2232 TAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLR 2053
              +K+ ++  GY  C   I  Y+KG L LQPGCNAAQTLE  IT  LN+IRE AG VC+ 
Sbjct: 701  NQEKKMKIDGGYKDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCMN 760

Query: 2052 ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPA 1873
             LHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAPNGFIDR+LPHFP N K PA
Sbjct: 761  TLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPA 820

Query: 1872 AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGT 1693
            AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS  YD T
Sbjct: 821  AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQT 880

Query: 1692 VRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKR 1513
            VR+A+  IVQFLYGDD MDP  MEGKDG+PLNLD+L MK  ATCP  G   LS  E+ + 
Sbjct: 881  VRNASGGIVQFLYGDDGMDPAKMEGKDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQI 940

Query: 1512 VDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGLENI 1333
            ++++LS++D   + GCS  F+  L  FLE  I  +K TR  L L E+   +   +  E+I
Sbjct: 941  LNDKLSEHDASSDDGCSEKFKQLLTYFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESI 1000

Query: 1332 ALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVA 1153
            A +I G + +QL+VFL+TC+ RYH K++EAGA++GAIGAQSIGEPGTQMTLKTFHFAGVA
Sbjct: 1001 AANISGISVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVA 1060

Query: 1152 SMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKT 973
            SMNVTLGVPRIKEIINAAK ISTPIITA+L+S+ DV +ARIVKG +EK VLGEVA++IK 
Sbjct: 1061 SMNVTLGVPRIKEIINAAKKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKI 1120

Query: 972  VLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIFPP 793
            VLK  Q  + VKLDM+ IE+L + I+A +V  SIL  PK+K+K +++RV+D  KL I+P 
Sbjct: 1121 VLKSSQPNLVVKLDMQRIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLRIYPA 1180

Query: 792  EADRLKIYFALHSLRNKLPKVIVKGISTVERAVIN----QDKGKYNLLVEGTNLAAVMGT 625
              D+ K+ + LH L++ LPKVIVKGI TVERAVI+    ++  +Y LLVEGTNL AVMGT
Sbjct: 1181 GIDKSKLLYELHHLKSMLPKVIVKGIPTVERAVISETGEENDKRYKLLVEGTNLLAVMGT 1240

Query: 624  QGVDGINTKSNHVIEIEQTLGIEAARKCIIDEIQYTMASHGMSIDLRHMMLLADVMTFKG 445
             GVD + TKSNH++E+ +TLGIEAAR+ IIDEIQYTM SHGM+ID RHMMLLAD+MT+KG
Sbjct: 1241 PGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKG 1300

Query: 444  QVLGITRFGIAKMKDSVLMLASFEKTTDHLFDASVHGRVDQIEGVSECXXXXXXXXXGTG 265
            ++LGITR+GIAKMK SVLMLASFEKT +HLF+AS  GR DQIEGVSEC         GTG
Sbjct: 1301 EILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTG 1360

Query: 264  LLKVRQRVDHLPKLEYAPSSLIS 196
            +LKVRQR+DHLP+ +Y P  +++
Sbjct: 1361 ILKVRQRLDHLPEFKYQPDPILA 1383


>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
            gi|241937900|gb|EES11045.1| hypothetical protein
            SORBIDRAFT_06g021120 [Sorghum bicolor]
          Length = 1391

 Score =  980 bits (2533), Expect = 0.0
 Identities = 499/744 (67%), Positives = 593/744 (79%), Gaps = 5/744 (0%)
 Frame = -1

Query: 2412 LGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARL 2233
            +GKATLGNGNK GL+SVLLRDYN++AAASCMNRLAK SAR+IGNHGFSIG+DDVQPG  L
Sbjct: 648  VGKATLGNGNKDGLYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHL 707

Query: 2232 TAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLR 2053
              +K++ +  GY KC   I L+ KG L L PGCNAAQTLE  ITG LN+IR +AG+VC+ 
Sbjct: 708  NRQKKKEIDGGYKKCHDLISLFAKGALALHPGCNAAQTLEHNITGVLNEIRSIAGNVCMD 767

Query: 2052 ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPA 1873
             LHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GF++R+LPHFP N K PA
Sbjct: 768  TLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFLNRTLPHFPINSKTPA 827

Query: 1872 AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGT 1693
            AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS  YD T
Sbjct: 828  AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQT 887

Query: 1692 VRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKR 1513
            VR+A+  IVQFLYGDD MDP  MEGKDG PLNLD+L MK  ATCP  GS  LS   + + 
Sbjct: 888  VRNASGGIVQFLYGDDGMDPAKMEGKDGMPLNLDQLFMKVMATCPQRGSDTLSPEAIKQM 947

Query: 1512 VDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGLENI 1333
            ++++L ++D   + GCS  F+ +L  FL+K I  +K TR  L L E+     D    E++
Sbjct: 948  LEDKLLQHDTSSDGGCSEEFKKNLTEFLDKRIELMKCTRRALHLHEDHVEKKDSCVEESV 1007

Query: 1332 ALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVA 1153
            A  I G +A+QL+VFL+TC+ RY SK++EAGA++GAIGAQSIGEPGTQMTLKTFHFAGVA
Sbjct: 1008 AAIISGISAKQLQVFLDTCLSRYQSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVA 1067

Query: 1152 SMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKT 973
            SMNVTLGVPRIKEIINAA+ ISTPIITA+L+S  DV +ARIVKG +EK VLGEVA +I+ 
Sbjct: 1068 SMNVTLGVPRIKEIINAARKISTPIITAQLLSKKDVLSARIVKGSMEKAVLGEVAVAIQI 1127

Query: 972  VLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIFPP 793
            VLK  Q  + VKLDM++IESL + I+A +V  SIL  PK+K+K +++RV+D  KL I+P 
Sbjct: 1128 VLKSSQPNLIVKLDMQLIESLHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRIYPA 1187

Query: 792  EADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDKGK-----YNLLVEGTNLAAVMG 628
              D+ K+   LH+L++ LPKVIVKGI TVER VI++ K K     Y LLVEGTNL AVMG
Sbjct: 1188 GTDKRKLQLELHNLKSILPKVIVKGIPTVERVVIDEVKVKNETERYQLLVEGTNLLAVMG 1247

Query: 627  TQGVDGINTKSNHVIEIEQTLGIEAARKCIIDEIQYTMASHGMSIDLRHMMLLADVMTFK 448
            T GVD   TKSNH++E  QTLGIEAAR+ IIDEIQYTM SHGM+ID RHMMLLAD+MT+K
Sbjct: 1248 TPGVDATKTKSNHIMETNQTLGIEAARRSIIDEIQYTMKSHGMNIDRRHMMLLADLMTYK 1307

Query: 447  GQVLGITRFGIAKMKDSVLMLASFEKTTDHLFDASVHGRVDQIEGVSECXXXXXXXXXGT 268
            G++LGITR+GIAKMK SVLMLASFEKT++HLF+AS  GR DQIEGVSEC         GT
Sbjct: 1308 GEILGITRYGIAKMKSSVLMLASFEKTSEHLFNASYSGREDQIEGVSECIIMGIPMQLGT 1367

Query: 267  GLLKVRQRVDHLPKLEYAPSSLIS 196
            G+LKVRQR+DH+P+ +Y P  ++S
Sbjct: 1368 GILKVRQRLDHVPEFKYQPDPILS 1391


>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
            brachyantha]
          Length = 1389

 Score =  974 bits (2517), Expect = 0.0
 Identities = 495/756 (65%), Positives = 598/756 (79%), Gaps = 17/756 (2%)
 Frame = -1

Query: 2412 LGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARL 2233
            +GK TLGNGNK G+FS+L+RDYN++AAASCMNRLAK SAR+IGNHGFSIG+DDV+PG  L
Sbjct: 635  VGKKTLGNGNKDGMFSILVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVRPGEHL 694

Query: 2232 TAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLR 2053
              +K++++ EGY +C   I  ++KG L LQPGCNAAQTLE +IT  LNKIRE AG++C+ 
Sbjct: 695  DQQKKKKIDEGYKECHDLITSFSKGALTLQPGCNAAQTLEHKITHVLNKIREAAGNICMD 754

Query: 2052 ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPA 1873
             LHWRNSPLIMSQCGSKGSPINISQM+ CVGQQSVGG RAPNGFIDR+LPHFP N K PA
Sbjct: 755  TLHWRNSPLIMSQCGSKGSPINISQMVVCVGQQSVGGHRAPNGFIDRTLPHFPINSKTPA 814

Query: 1872 AKGFVANSFYTGLTATEFFFHTMGG-----------------REGLVDTAVKTAETGYMS 1744
            AKGFVANSFY GLTATEFFFHTMGG                 REGLVDTAVKTAETGYMS
Sbjct: 815  AKGFVANSFYNGLTATEFFFHTMGGIYIVLPATEFFFHTMGGREGLVDTAVKTAETGYMS 874

Query: 1743 RRLMKALEDLSTHYDGTVRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKAT 1564
            RRLMK LEDLS  YD TVR+A+  IVQFLYGDD MDP  MEG+DG+PLNLD+L MK  AT
Sbjct: 875  RRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGEDGKPLNLDQLFMKVMAT 934

Query: 1563 CPANGSPALSVSELSKRVDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLG 1384
            CP  G   LS  E+ + ++++LS++D   + GCS  F+  L +FLE  I  +K TR  L 
Sbjct: 935  CPQRGQNTLSPGEILQILNDKLSEHDASSDDGCSEKFKQLLKDFLEDRIKLLKSTRRALC 994

Query: 1383 LSEEKNNDPDLAGLENIALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIG 1204
            L +E +   D +  E+IA +I G +A+QL+VFL+TC+ RYHSK++EAGA++GAIGAQSIG
Sbjct: 995  L-DENHVGKDSSIEESIAANISGISAKQLQVFLDTCLSRYHSKKIEAGASIGAIGAQSIG 1053

Query: 1203 EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVK 1024
            EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAK ISTPIITA+L+S  DV +AR+VK
Sbjct: 1054 EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKKISTPIITAELLSGKDVLSARVVK 1113

Query: 1023 GRIEKTVLGEVAKSIKTVLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIK 844
            G +EK VLGEVA+ IK VLK  Q  + VKLDM+ IE L + I+A +V  SIL  P++K+K
Sbjct: 1114 GSMEKAVLGEVAEDIKIVLKSSQPNLVVKLDMQRIEDLHMGISADSVQLSILNHPRIKLK 1173

Query: 843  QQNLRVLDHEKLHIFPPEADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDKGKYNL 664
             +++RV+D  KL ++P   D+ K+ + LH+L++ LPKVIVKGI TVERAVI+Q   KY+L
Sbjct: 1174 SEHVRVIDKAKLRVYPTAIDKSKLLYELHNLKSMLPKVIVKGIPTVERAVISQTGDKYSL 1233

Query: 663  LVEGTNLAAVMGTQGVDGINTKSNHVIEIEQTLGIEAARKCIIDEIQYTMASHGMSIDLR 484
            LVEGTNL AVMGT GVD + TKSNH++E+ +TLGIEAAR+ IIDEIQYTM SHGM+ID R
Sbjct: 1234 LVEGTNLLAVMGTPGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMTSHGMNIDSR 1293

Query: 483  HMMLLADVMTFKGQVLGITRFGIAKMKDSVLMLASFEKTTDHLFDASVHGRVDQIEGVSE 304
            HMMLLAD+MT+KG++LGITR+GIAKMK SVLMLASFEKT +HLF+AS  GR DQIEGVSE
Sbjct: 1294 HMMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSE 1353

Query: 303  CXXXXXXXXXGTGLLKVRQRVDHLPKLEYAPSSLIS 196
            C         GTG+LKVRQR+DHLP+ +Y P  +++
Sbjct: 1354 CIIMGIPMQLGTGILKVRQRLDHLPEFKYQPDPILA 1389


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
            sativus]
          Length = 1400

 Score =  973 bits (2515), Expect = 0.0
 Identities = 499/754 (66%), Positives = 589/754 (78%), Gaps = 15/754 (1%)
 Frame = -1

Query: 2412 LGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARL 2233
            +GKATLGNGNK GL+SVLLRDY A+AAA CMNRLAKLSARWIGNHGFSIGIDDVQPG +L
Sbjct: 647  VGKATLGNGNKDGLYSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQL 706

Query: 2232 TAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLR 2053
              KK+  + EGY  CDK I+L+N G L  + GC+AAQ+LE++IT  LN IRE   +VC++
Sbjct: 707  VKKKQTTILEGYRDCDKQINLFNTGNLPPEAGCDAAQSLESKITQILNGIREATANVCMQ 766

Query: 2052 ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPA 1873
             LHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFIDRSLPHF R  K PA
Sbjct: 767  NLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPA 826

Query: 1872 AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGT 1693
            AKGFVANSFY+GLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+KALEDLS HYD +
Sbjct: 827  AKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSS 886

Query: 1692 VRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKR 1513
            VR+A   IVQF YGDD MDP  MEGK G PLN +RL +K KATCP++G+  LS SE S+ 
Sbjct: 887  VRNAGGCIVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSPSEFSET 946

Query: 1512 VDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEE--------KNNDP 1357
            V++RLSK D  PE GCS AF  SL  FL KY+   KK+  TL    E         ++D 
Sbjct: 947  VEDRLSKDDASPECGCSPAFVGSLKIFLNKYVEAQKKSWGTLLADNESAVDKSIISSSDN 1006

Query: 1356 DLAGLEN-IALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTL 1180
            D   + N +  +I G T RQL+VFL+TC+ RYH+K++EAG A+GAIGAQSIGEPGTQMTL
Sbjct: 1007 DNIVIRNKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTL 1066

Query: 1179 KTFHFAGVASMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVL 1000
            KTFHFAGVASMNVTLGVPRIKEIIN AK ISTPI+TA L  D++V  AR+VK RIEKT L
Sbjct: 1067 KTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNL 1126

Query: 999  GEVAKSIKTVLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLD 820
            G++AK I+ V+    A I +KLDM  I   +L + A  V ++IL TPKLK+K +++ VLD
Sbjct: 1127 GQIAKCIQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLD 1186

Query: 819  HEKLHIFPPEADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDKG------KYNLLV 658
              KL + P +ADR K++F LH L+N LP V+VKGI TV RAVI ++K       K++LLV
Sbjct: 1187 DRKLRVLPQDADRNKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLV 1246

Query: 657  EGTNLAAVMGTQGVDGINTKSNHVIEIEQTLGIEAARKCIIDEIQYTMASHGMSIDLRHM 478
            EGT L AVMGT+GVDG NTKSNH+IE++Q LGIEAARKCII+EI+YTM SHGMSID+RHM
Sbjct: 1247 EGTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHM 1306

Query: 477  MLLADVMTFKGQVLGITRFGIAKMKDSVLMLASFEKTTDHLFDASVHGRVDQIEGVSECX 298
            MLL D+MTF+G+VLGITRFGI KM  SVLMLASFEKT DHLF+ASV+GR D+IEGVSEC 
Sbjct: 1307 MLLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECV 1366

Query: 297  XXXXXXXXGTGLLKVRQRVDHLPKLEYAPSSLIS 196
                    GTG+LKVRQRV    +L Y P +++S
Sbjct: 1367 IMGIPMPLGTGMLKVRQRVSVPQQLPYGPPAILS 1400


>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
            lycopersicum]
          Length = 1390

 Score =  972 bits (2513), Expect = 0.0
 Identities = 498/749 (66%), Positives = 599/749 (79%), Gaps = 11/749 (1%)
 Frame = -1

Query: 2412 LGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARL 2233
            LGKATLGNGNK GL+SVLLRDY ++AAA+CMNRLAKLSARWIGNHGFSIGIDDV PG  L
Sbjct: 642  LGKATLGNGNKDGLYSVLLRDYESHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENL 701

Query: 2232 TAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLR 2053
              +K+  +   Y KC+  I  +N+GKL +QPGC+AAQTLEAE+T  LNK+R+  G +C++
Sbjct: 702  VKQKQGEIHRNYKKCEDCITQFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMK 761

Query: 2052 ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPA 1873
             L WRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDRSLPHFP   K PA
Sbjct: 762  ALDWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPA 821

Query: 1872 AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGT 1693
            AKGFVA+SF+ GL+ATEFFFHTMGGREGLVDTAVKTA+TGYMSRRLMKALEDL+ +YD T
Sbjct: 822  AKGFVAHSFFDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDST 881

Query: 1692 VRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKR 1513
            VR+A++ IVQF+YGDD MDP  ME K G PLN  RL MK KATCP  G  +LS SE+ + 
Sbjct: 882  VRNASACIVQFMYGDDGMDPSRMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEI 941

Query: 1512 VDERLSKYDMQPEAGCSAAFRNSLFNFLEKYIS-NVKKTRLTLGLSEEKNNDPDLAGLEN 1336
            V+ERLS +DM PE GCS AFR SL +FL K ++  +K  R +L L EE+    D   LE 
Sbjct: 942  VNERLSYHDMTPEGGCSEAFRASLSDFLIKSLAETLKNLRESLLLGEEQYEGDDRGYLEK 1001

Query: 1335 IALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGV 1156
            I L+I G T +QL+VFL TCI RYH KR+EAG A+GAIGAQSIGEPGTQMTLKTFHFAGV
Sbjct: 1002 IVLNISGITKKQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGV 1061

Query: 1155 ASMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIK 976
            ASMNVTLGVPRIKEIINAAK I+TPIITAKL+S  ++ AAR++K RIEKT+LG+VAKS+K
Sbjct: 1062 ASMNVTLGVPRIKEIINAAKKITTPIITAKLLSAGNLTAARMIKARIEKTLLGQVAKSVK 1121

Query: 975  TVLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIFP 796
             VL    A I++ LDM  I+  QL I AYTV +SIL+T K+K+K+  ++VL+  KL +F 
Sbjct: 1122 IVLASRLASIAISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVF- 1180

Query: 795  PEADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDKGK----------YNLLVEGTN 646
            P+A++ K++F LH L+NKLP V+VKGI+TV+RAV+N+++ K          Y LLVEGT 
Sbjct: 1181 PQANKDKLHFELHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTG 1240

Query: 645  LAAVMGTQGVDGINTKSNHVIEIEQTLGIEAARKCIIDEIQYTMASHGMSIDLRHMMLLA 466
            L AVMG +GVDG  TKSNH++E++ TLGIEAAR  IIDEI YTM+SHGM+IDLRHMMLLA
Sbjct: 1241 LLAVMGIEGVDGRYTKSNHIMEVQHTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLA 1300

Query: 465  DVMTFKGQVLGITRFGIAKMKDSVLMLASFEKTTDHLFDASVHGRVDQIEGVSECXXXXX 286
            D+MT+KG+VLGITR G+ KMKDSVLMLASFEKTTDHLF+ASV+GR D+IEGV+EC     
Sbjct: 1301 DLMTYKGEVLGITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGI 1360

Query: 285  XXXXGTGLLKVRQRVDHLPKLEYAPSSLI 199
                GTG+ K+RQRV+H+ +L Y P  ++
Sbjct: 1361 PMTIGTGMFKLRQRVEHV-ELNYQPDPMM 1388


>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Solanum tuberosum]
          Length = 1394

 Score =  972 bits (2512), Expect = 0.0
 Identities = 499/749 (66%), Positives = 599/749 (79%), Gaps = 11/749 (1%)
 Frame = -1

Query: 2412 LGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARL 2233
            LGKATLGNGNK GL+SVLLRDY ++AAA+CMNRLAKLSARWIGNHGFSIGIDDV PG  L
Sbjct: 642  LGKATLGNGNKDGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENL 701

Query: 2232 TAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLR 2053
              +K+  +   Y KC+  I  +N+GKL +QPGC+AAQTLEAE+T  LNK+R+  G +C++
Sbjct: 702  VKQKQGEIHRNYKKCEDCITQFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMK 761

Query: 2052 ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPA 1873
             L WRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDRSLPHFP   K PA
Sbjct: 762  ALDWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPA 821

Query: 1872 AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGT 1693
            AKGFVA+SF+ GL+ATEFFFHTMGGREGLVDTAVKTA+TGYMSRRLMKALEDL+ +YD T
Sbjct: 822  AKGFVAHSFFDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDST 881

Query: 1692 VRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKR 1513
            VR+A++ IVQF+YGDD MDP  ME K G PLN  RL MK KATCP  G  +LS SE+ + 
Sbjct: 882  VRNASACIVQFMYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEI 941

Query: 1512 VDERLSKYDMQPEAGCSAAFRNSLFNFLEKYIS-NVKKTRLTLGLSEEKNNDPDLAGLEN 1336
            V+ERLS +DM PE GCS AFR+SL +FL K ++  +K  R +L L EE+    D   LE 
Sbjct: 942  VNERLSYHDMTPEGGCSEAFRSSLSDFLIKNLAETLKNLRESLLLGEEQYEGDDRGYLEK 1001

Query: 1335 IALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGV 1156
            IAL+I G T RQL+VFL TCI RYH KR+EAG A+GAIGAQSIGEPGTQMTLKTFHFAGV
Sbjct: 1002 IALNISGITKRQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGV 1061

Query: 1155 ASMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIK 976
            ASMNVTLGVPRIKEIINAAK I+TPIIT KL+S  ++ AAR++K RIEKT+LG+VAKS+K
Sbjct: 1062 ASMNVTLGVPRIKEIINAAKKITTPIITTKLLSAANLTAARMIKARIEKTLLGQVAKSVK 1121

Query: 975  TVLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIFP 796
             VL    A I++ LDM  I+  QL I AYTV +SIL+T K+K+K+  ++VL+  KL +F 
Sbjct: 1122 IVLASRLASIAISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVF- 1180

Query: 795  PEADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDKGK----------YNLLVEGTN 646
            P+A++ K++F LH L+NKLP V+VKGI+TV+RAV+N+++ K          Y LLVEGT 
Sbjct: 1181 PQANKDKLHFELHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTG 1240

Query: 645  LAAVMGTQGVDGINTKSNHVIEIEQTLGIEAARKCIIDEIQYTMASHGMSIDLRHMMLLA 466
            L AVMG +GVDG  TKSNH++E++ TLGIEAAR  IIDEI YTM+SHGM+IDLRHMMLLA
Sbjct: 1241 LLAVMGIEGVDGRYTKSNHIMEVQNTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLA 1300

Query: 465  DVMTFKGQVLGITRFGIAKMKDSVLMLASFEKTTDHLFDASVHGRVDQIEGVSECXXXXX 286
            D+MT+KG+VLGITR G+ KMKDSVLMLASFEKTTDHLF+ASV+GR D+IEGV+EC     
Sbjct: 1301 DLMTYKGEVLGITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGI 1360

Query: 285  XXXXGTGLLKVRQRVDHLPKLEYAPSSLI 199
                GTG+ K+RQRV+ + +L Y P  +I
Sbjct: 1361 PMTIGTGMFKLRQRVEQV-ELNYQPDPII 1388


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            rpc1-like isoform X2 [Citrus sinensis]
          Length = 1404

 Score =  937 bits (2423), Expect = 0.0
 Identities = 496/752 (65%), Positives = 575/752 (76%), Gaps = 13/752 (1%)
 Frame = -1

Query: 2412 LGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARL 2233
            LGKATLGNGNK GL+SVLLRDY A+A + CMNRLAKLSARWIGNHGFSIGIDDVQP   L
Sbjct: 660  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 719

Query: 2232 TAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLR 2053
            + KK + ++E Y  C+  I  YN+GKL L+PGC+AAQTLEA IT  LN+IRE AG  C+ 
Sbjct: 720  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 779

Query: 2052 ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPA 1873
             L WRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAPNGFIDRSLPHFPR  K+PA
Sbjct: 780  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 839

Query: 1872 AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGT 1693
            AKGFVANSFY+GL+ATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+KALEDLS  YD +
Sbjct: 840  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 899

Query: 1692 VRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKR 1513
            VR+A   IVQFLYGDD MDP +MEGK GEPLN DRLLMK KATCP  G   LS  ++S+ 
Sbjct: 900  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEI 959

Query: 1512 VDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGLENI 1333
            V+++L+ Y  +    CS AF NSL  F E     + K    +   E+   D     LE +
Sbjct: 960  VEKQLAAYGKE---SCSEAFLNSLRKFFEGQQDKLDK---KIKFVEDIGWDDKSQILEEV 1013

Query: 1332 ALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVA 1153
                 G T +QLEVF++TC  RYH KR+EAG A+GAIGAQSIGEPGTQMTLKTFHFAGVA
Sbjct: 1014 THKTSGITEKQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 1073

Query: 1152 SMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKT 973
            SMN+T GVPRIKEIIN AK ISTPIITA+L  +++  AAR+VKGRIEKT+LG+VAKSIK 
Sbjct: 1074 SMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKI 1133

Query: 972  VLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIFPP 793
            V+    A I + LDM  I+   L I A  V ESI++TPK+K+KQQ+++VLD  KL IFPP
Sbjct: 1134 VMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPP 1193

Query: 792  EADRLKIYFALHSLRNKLPKVIVKGISTVERAVI------------NQDKGKYNLLVEGT 649
              D+ KI+F L+SL+N LP VIVKGI TVER VI            N +K KY LLVEGT
Sbjct: 1194 -VDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGT 1252

Query: 648  NLAAVMGTQGVDGINTKSNHVIEIEQTLGIEAARKCIIDEIQYTMASHGMSIDLRHMMLL 469
             L AVMG +G+DG  TKSNH+ E++QTLGIEAAR CIIDEI  TM +HGMSID RHMMLL
Sbjct: 1253 GLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLL 1312

Query: 468  ADVMTFKGQVLGITRFGIAKMKDSVLMLASFEKTTDHLFDASVHGRVDQIEGVSECXXXX 289
            AD+MTF+G+VLGITRFGI KM  SVLMLASFEKT DHLF+ASV+GR D+IEGVSEC    
Sbjct: 1313 ADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMG 1372

Query: 288  XXXXXGTGLLKVRQRVDHLPKLEY-APSSLIS 196
                 GTG+LK+RQR    P L+Y AP  ++S
Sbjct: 1373 IPMPLGTGILKIRQRDAVPPMLKYGAPDPIMS 1404


>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Brachypodium distachyon]
          Length = 1392

 Score =  936 bits (2420), Expect = 0.0
 Identities = 485/748 (64%), Positives = 580/748 (77%), Gaps = 9/748 (1%)
 Frame = -1

Query: 2412 LGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARL 2233
            +GK TLGNGNK G+FSVL+RDYN++AAASCMNRLAK SAR+IGNHGFSIG+DDVQPG  L
Sbjct: 646  VGKKTLGNGNKDGMFSVLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGESL 705

Query: 2232 TAKKEERVTEGYNKCDKHIDLYNKGK--LNLQPGCNAAQTLEAEITGELNKIRELAGSVC 2059
              KK++ + +GY +C   I +Y+KG     L PGCN AQTLE  ++  LN++RE AG  C
Sbjct: 706  NQKKKKTIDQGYTECHDLIAVYSKGAPGAELHPGCNRAQTLEVRVSAILNQLREKAGEHC 765

Query: 2058 LRELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKK 1879
            +  LHWRNSPLIMSQCGSKGSPINISQM+ CVGQQSVGGRRAP+GFIDR+LPHFP + K 
Sbjct: 766  MNTLHWRNSPLIMSQCGSKGSPINISQMVVCVGQQSVGGRRAPDGFIDRTLPHFPIHSKT 825

Query: 1878 PAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYD 1699
            PAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS  YD
Sbjct: 826  PAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYD 885

Query: 1698 GTVRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELS 1519
             TVR+A+S IVQF+YGDD MDPV MEGK G PLNLD+L MK KATCP  G   LS   + 
Sbjct: 886  QTVRNASSGIVQFVYGDDGMDPVKMEGKGGSPLNLDQLFMKVKATCPQRGHDMLSPEAIM 945

Query: 1518 KRVDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGLE 1339
            + ++++LS+ DM    GCS  F+  L  F E  I  ++ TR TL L E+     D +  E
Sbjct: 946  QMLNDKLSEQDMS-SGGCSDKFKELLTKFFEDRIKMLRSTRRTLHLDEDHVGMKDSSIEE 1004

Query: 1338 NIALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAG 1159
             IA +I G +A+QL+VFL+TC+ RYHSK +EAGA++GAIGAQSIGEPGTQMTLKTFHFAG
Sbjct: 1005 RIAANISGISAKQLQVFLDTCLSRYHSKIIEAGASIGAIGAQSIGEPGTQMTLKTFHFAG 1064

Query: 1158 VASMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSI 979
            VASMNVTLGVPRIKEIINAAKNISTPIITA+L+S  D+  A  VK  +EK VLGEVA  I
Sbjct: 1065 VASMNVTLGVPRIKEIINAAKNISTPIITAELLSGQDMSFAVKVKRYVEKVVLGEVAAVI 1124

Query: 978  KTVLKPLQAFISVKLDMRIIESL-QLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHI 802
            K VLK  Q  + VKLDM+ IE+   + I++ +V +SI++ PK+K+K +++RV+D  KL I
Sbjct: 1125 KIVLKSSQPNLVVKLDMQRIEAQGYMGISSDSVQQSIIRHPKIKLKSEHVRVIDGAKLRI 1184

Query: 801  FPPEADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDK------GKYNLLVEGTNLA 640
            +P   D+ K+   LH+L++ LPKVIVKGI TVERAV+N  K       +YNLLVEGTNL 
Sbjct: 1185 YPTGTDKSKLQLELHTLKSMLPKVIVKGIPTVERAVVNPVKRPDKTLDRYNLLVEGTNLL 1244

Query: 639  AVMGTQGVDGINTKSNHVIEIEQTLGIEAARKCIIDEIQYTMASHGMSIDLRHMMLLADV 460
             V+GT GVD   TKSNH++E+ QTLGIEAAR+ IIDEI+YT  S+ M ID RHMMLLAD+
Sbjct: 1245 KVLGTPGVDAKKTKSNHIMEVNQTLGIEAARRSIIDEIRYTFESNNMIIDQRHMMLLADL 1304

Query: 459  MTFKGQVLGITRFGIAKMKDSVLMLASFEKTTDHLFDASVHGRVDQIEGVSECXXXXXXX 280
            MT+KG+VLGITRFGI KMK SVLMLASFEKT +HLF+AS  GR D+IEGVSEC       
Sbjct: 1305 MTYKGEVLGITRFGIVKMKSSVLMLASFEKTLEHLFNASYSGREDEIEGVSECIIMGIPM 1364

Query: 279  XXGTGLLKVRQRVDHLPKLEYAPSSLIS 196
              G+G+LKVRQR+DHLP+  Y P ++IS
Sbjct: 1365 TLGSGILKVRQRLDHLPEFNYQPDAIIS 1392


>ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Selaginella moellendorffii]
            gi|300158014|gb|EFJ24638.1| hypothetical protein
            SELMODRAFT_442419 [Selaginella moellendorffii]
          Length = 1348

 Score =  936 bits (2419), Expect = 0.0
 Identities = 483/667 (72%), Positives = 547/667 (82%), Gaps = 7/667 (1%)
 Frame = -1

Query: 2412 LGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLS----ARWIGNHGFSIGIDDVQP 2245
            LGK TLGNG+K GLF+VLLRDY   AAASCMNRLAKL     ARWIGNHGFSIGIDDVQP
Sbjct: 659  LGKGTLGNGSKDGLFTVLLRDYGEQAAASCMNRLAKLRHSYFARWIGNHGFSIGIDDVQP 718

Query: 2244 GARLTAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGS 2065
            G+RLT +KE+R+ EGY  CDKHI L+NKG+L LQPGC+AAQTLE+EITGELNKIRE AG 
Sbjct: 719  GSRLTVEKEKRIAEGYRACDKHISLFNKGQLTLQPGCDAAQTLESEITGELNKIREAAGQ 778

Query: 2064 VCLRELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRND 1885
            VC+ ELHWRNSPLIMSQCGSKGS INISQMIACVGQQSV G RAPNGFI+RSLPHFPRND
Sbjct: 779  VCVNELHWRNSPLIMSQCGSKGSVINISQMIACVGQQSVSGHRAPNGFIERSLPHFPRND 838

Query: 1884 KKPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTH 1705
            K P AKGFVANSFY+GLTATEF FHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLS  
Sbjct: 839  KTPQAKGFVANSFYSGLTATEFIFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSCQ 898

Query: 1704 YDGTVRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSE 1525
            YDGTVR+++  IVQ +YGDD+MDPV MEG++G PLNLDR+LMK KATCP   +PAL  SE
Sbjct: 899  YDGTVRNSSGVIVQLIYGDDSMDPVSMEGQNGTPLNLDRVLMKAKATCPRGATPALPPSE 958

Query: 1524 LSKRVDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAG 1345
            L K V+ + S    Q  + CS AF +SL  FL K    +  TR  L L  E   + D   
Sbjct: 959  LWKIVESKFS----QDGSECSMAFLDSLRKFLRKEFDTISSTRKRLSLPLEDFGNLD--- 1011

Query: 1344 LENIALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHF 1165
             EN+A ++ G T+RQLEVFL TCI RYH K+++ G AVGAIGAQSIGEPGTQMTLKTFHF
Sbjct: 1012 DENVAANVSGLTSRQLEVFLNTCIGRYHRKKLDPGTAVGAIGAQSIGEPGTQMTLKTFHF 1071

Query: 1164 AGVASMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAK 985
            AGVASMN+TLGVPRIKEIINA+K ISTPIITAKL+S+NDVKAARIVKGRIEKT LG+VAK
Sbjct: 1072 AGVASMNITLGVPRIKEIINASKKISTPIITAKLVSENDVKAARIVKGRIEKTALGDVAK 1131

Query: 984  SIKTVLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPK---LKIKQQNLRVLDHE 814
            SIK VL+P QAF+S+KLDM  I SLQL+I A TVAE++LK PK   +K+K+Q+++V D  
Sbjct: 1132 SIKIVLRPGQAFVSIKLDMDRIYSLQLDIRAETVAEAVLKFPKIKSMKLKEQHVKVNDDR 1191

Query: 813  KLHIFPPEADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDKGKYNLLVEGTNLAAV 634
             + +  PE+DR K+ FALHSL+N LPKVIVKGI TVERAVINQ+KGKYNLLVEGTNL AV
Sbjct: 1192 SISLTTPESDRKKMLFALHSLQNMLPKVIVKGIPTVERAVINQEKGKYNLLVEGTNLKAV 1251

Query: 633  MGTQGVDGINTKSNHVIEIEQTLGIEAARKCIIDEIQYTMASHGMSIDLRHMMLLADVMT 454
            MGT+GVDG  T SNH+ E  + LGIEAAR  II EIQYTM SHGMSID RHMMLLADVMT
Sbjct: 1252 MGTEGVDGRETTSNHIFETVEVLGIEAARNGIIKEIQYTMGSHGMSIDQRHMMLLADVMT 1311

Query: 453  FKGQVLG 433
            ++G+  G
Sbjct: 1312 YRGEFWG 1318


>gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]
          Length = 1395

 Score =  935 bits (2417), Expect = 0.0
 Identities = 492/752 (65%), Positives = 574/752 (76%), Gaps = 13/752 (1%)
 Frame = -1

Query: 2412 LGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARL 2233
            LGKATLGNGNK GL+SVLLRDYNA+AAA+CMNRLAKLSARWIGNHGFSIGIDDVQPG RL
Sbjct: 653  LGKATLGNGNKDGLYSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGKRL 712

Query: 2232 TAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLR 2053
              +K   ++  Y KCD+ I  +N+GKL  +PG +AAQTLEA +T  LN IR+  G VC++
Sbjct: 713  NDEKALTISGDYKKCDEEIQTFNEGKLKPKPGYDAAQTLEANVTAILNNIRDKTGKVCMK 772

Query: 2052 ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPA 1873
            ELHWRNSPLIMSQCGSKGS INISQMIACVGQQSVGGRRAPNGFIDRSLPHF R  K PA
Sbjct: 773  ELHWRNSPLIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPA 832

Query: 1872 AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGT 1693
            AKGFVANSFY+GLTATEFFFHTM GREGLVDTAVKTAETGYMSRRL+KALEDLS HYD T
Sbjct: 833  AKGFVANSFYSGLTATEFFFHTMAGREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNT 892

Query: 1692 VRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKR 1513
            VR+A+  IVQF+YGDD MDP  MEGK G PLN DRLLMK KATCP      L V  + + 
Sbjct: 893  VRNASGCIVQFIYGDDGMDPACMEGKSGFPLNFDRLLMKVKATCPPIEQKCLHVGSIMQM 952

Query: 1512 VDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGLENI 1333
            ++E+L+K+D  P   CS AF+ SL  FL+   + + +    +    +K+       LE +
Sbjct: 953  LEEQLAKHD--PAGVCSEAFKKSLKGFLKSQTNELDRVMKLVNNCAQKSEI-----LEKV 1005

Query: 1332 ALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVA 1153
               I G + RQLEVF+ TCI RY SK +EAG A+GAIGAQSIGEPGTQMTLKTFHFAGVA
Sbjct: 1006 GHKISGISDRQLEVFVSTCISRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 1065

Query: 1152 SMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKT 973
            SMN+T GVPRIKEIINAAK ISTP+ITA+L  D++   A+IVKGRIEKTVLG+VAKSIK 
Sbjct: 1066 SMNITQGVPRIKEIINAAKRISTPVITAELEFDDNPNIAQIVKGRIEKTVLGQVAKSIKI 1125

Query: 972  VLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIFPP 793
            V+    A + + LDM II   +L I A  V ESIL+TPK+K+K+Q+++VLD  KL + PP
Sbjct: 1126 VITSRSASVVITLDMEIILDAELYIDANIVKESILQTPKIKLKEQHVKVLDGRKLEVVPP 1185

Query: 792  EADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDKGK-------------YNLLVEG 652
             ADR +I+F LHSL+N LP V+VKGI TVER V+  DK K             + LLVEG
Sbjct: 1186 -ADRSQIHFELHSLKNLLPLVVVKGIKTVERTVV-YDKNKEKKNQKEEETTKHFQLLVEG 1243

Query: 651  TNLAAVMGTQGVDGINTKSNHVIEIEQTLGIEAARKCIIDEIQYTMASHGMSIDLRHMML 472
            T L AVMG +G+DG  T SNHV+E+EQ LGIEAARKCIIDEI  TM  HGM+ID RHMML
Sbjct: 1244 TGLQAVMGIEGIDGRRTWSNHVMEMEQILGIEAARKCIIDEIAQTMEHHGMTIDRRHMML 1303

Query: 471  LADVMTFKGQVLGITRFGIAKMKDSVLMLASFEKTTDHLFDASVHGRVDQIEGVSECXXX 292
            LADVMTF+G+VLGITRFGI KM  S+LMLASFE+T DHLF+A+V+GR D+IEGV+EC   
Sbjct: 1304 LADVMTFRGEVLGITRFGIQKMDKSILMLASFERTADHLFNAAVNGRDDKIEGVTECIIM 1363

Query: 291  XXXXXXGTGLLKVRQRVDHLPKLEYAPSSLIS 196
                  GTG+LKV QRVD  P L Y P  ++S
Sbjct: 1364 GIPMQIGTGILKVIQRVDPPPMLRYGPDPVLS 1395


>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
            communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
            polymerase III largest subunit, putative [Ricinus
            communis]
          Length = 1383

 Score =  926 bits (2394), Expect = 0.0
 Identities = 486/759 (64%), Positives = 578/759 (76%), Gaps = 20/759 (2%)
 Frame = -1

Query: 2412 LGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLS--ARWIGNHGFSIGIDDVQPGA 2239
            LGKATLGNGNK GL+S+LLRDYN +AAA+CMNRLAKL   ARWIGNHGFSIGIDDVQPG 
Sbjct: 626  LGKATLGNGNKDGLYSILLRDYNPHAAATCMNRLAKLRQVARWIGNHGFSIGIDDVQPGK 685

Query: 2238 RLTAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVC 2059
            +L   K + ++ GY +CDK I+ YN+GKL L+PGC+A QTLE+EIT +LNK+RE AG VC
Sbjct: 686  KLIDGKGKTISNGYQQCDKLIEQYNEGKLLLKPGCDATQTLESEITEKLNKLREEAGDVC 745

Query: 2058 LRELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKK 1879
            ++ELHWRNSPLIMSQCGSKGS INISQM+ACVGQQSVGGRRAP+GFIDRSLPHFPR  K 
Sbjct: 746  MKELHWRNSPLIMSQCGSKGSVINISQMVACVGQQSVGGRRAPDGFIDRSLPHFPRKSKT 805

Query: 1878 PAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYD 1699
            PAAKGFVANSFY+GL ATEFFFHTM GREGLVDTAVKTA+TGYMSRRL+K LEDLS  YD
Sbjct: 806  PAAKGFVANSFYSGLMATEFFFHTMAGREGLVDTAVKTADTGYMSRRLIKGLEDLSIQYD 865

Query: 1698 GTVRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELS 1519
             TVR+A+  IVQFLYGDD +DP  MEGK G PLNLDRL  K KATCP      LS  ++S
Sbjct: 866  NTVRNASGCIVQFLYGDDGLDPASMEGKGGVPLNLDRLFSKVKATCPVREEDYLSPLDIS 925

Query: 1518 KRVDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKK-TRLTLGLSEEKNNDPDLAG- 1345
              V+  L K+DM     CS AF+ SL +FL  +   ++   +L  G+ +  + +    G 
Sbjct: 926  DVVENLLLKHDMALGGICSEAFKKSLTSFLGSHAKRLESMMKLADGVEDPTSENIQTGGI 985

Query: 1344 ------LENIALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMT 1183
                  +E +A  I G + RQ+EVF++TCI RY  KR+E G A+GAIGAQSIGEPGTQMT
Sbjct: 986  RGNSKIIERLAHKIFGVSERQIEVFVKTCINRYLWKRVEPGTAIGAIGAQSIGEPGTQMT 1045

Query: 1182 LKTFHFAGVASMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTV 1003
            LKTFHFAGVASMN+T GVPRIKEIIN AK ISTPIITA+L  + +V AARI KGRI+KTV
Sbjct: 1046 LKTFHFAGVASMNITQGVPRIKEIINGAKKISTPIITAELEQNTNVTAARIAKGRIQKTV 1105

Query: 1002 LGEVAKSIKTVLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVL 823
            LG+VAKSIK V+    A + + LDM+ I++ QL + A  V E+IL+TP++K+K Q+++VL
Sbjct: 1106 LGQVAKSIKIVMTSRSASVVITLDMKTIQNAQLSLDANIVKEAILRTPRIKLKPQHIKVL 1165

Query: 822  DHEKLHIFPPEADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDK--GK-------- 673
            D  KL +  P  DR +++F LH+L+N LP +IV+GI TVERAVI Q K  GK        
Sbjct: 1166 DTRKLEVI-PLGDRERVHFELHNLKNLLPSIIVQGIKTVERAVIAQKKHDGKANDQELPT 1224

Query: 672  YNLLVEGTNLAAVMGTQGVDGINTKSNHVIEIEQTLGIEAARKCIIDEIQYTMASHGMSI 493
            YN+LVEG  L  VMGT+GVDG  T SNHV+E+++ LGIEAARKCIIDEI  TM  HGMSI
Sbjct: 1225 YNMLVEGMGLDLVMGTEGVDGCKTTSNHVMEVQKFLGIEAARKCIIDEINQTMEHHGMSI 1284

Query: 492  DLRHMMLLADVMTFKGQVLGITRFGIAKMKDSVLMLASFEKTTDHLFDASVHGRVDQIEG 313
            D+RHMMLL D+MTFKG+VLGITRFGI KM  SVLMLASFEKT DHL+ A+V GR D+IEG
Sbjct: 1285 DIRHMMLLGDLMTFKGEVLGITRFGIQKMDKSVLMLASFEKTADHLYHAAVFGRDDKIEG 1344

Query: 312  VSECXXXXXXXXXGTGLLKVRQRVDHLPKLEYAPSSLIS 196
            VSEC         GTG+LKV+QRVD  P L Y   S+IS
Sbjct: 1345 VSECIIMGIPMQIGTGILKVQQRVDPPPVLNYGSDSIIS 1383


>ref|XP_004294640.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Fragaria vesca subsp. vesca]
          Length = 1390

 Score =  917 bits (2370), Expect = 0.0
 Identities = 468/742 (63%), Positives = 565/742 (76%), Gaps = 15/742 (2%)
 Frame = -1

Query: 2412 LGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARL 2233
            LGK TLGNGNK GLFSVLLRDY A+AAASCMNR+AKLSARWIGNHGFSIGI DVQP   L
Sbjct: 649  LGKGTLGNGNKDGLFSVLLRDYKAHAAASCMNRVAKLSARWIGNHGFSIGISDVQPSDIL 708

Query: 2232 TAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLR 2053
              +KE+ + +GY+KCD  I LY +G+L L PGC+AAQ+LE+ IT  LN IR+  G +C++
Sbjct: 709  YGEKEKIIKKGYDKCDDQIKLYKEGQLRLAPGCDAAQSLESGITAVLNDIRDQTGKLCMQ 768

Query: 2052 ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPA 1873
             LHWRNSPLIMSQCGSKGS INISQM+ACVGQQSVGGRRAPNGFIDRSLPHFPR    PA
Sbjct: 769  TLHWRNSPLIMSQCGSKGSAINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKVNTPA 828

Query: 1872 AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGT 1693
            AKGFVA+SFY+GLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL K LEDLS  YD T
Sbjct: 829  AKGFVASSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLSKVLEDLSVQYDKT 888

Query: 1692 VRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKR 1513
            VR+AN  IVQF YGDD MDP  MEGK G PL+  RL  + KATCPA  S +LS  E+S+ 
Sbjct: 889  VRAANGGIVQFCYGDDGMDPAMMEGKSGAPLDFYRLFFRAKATCPAGESESLSPDEVSEI 948

Query: 1512 VDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGLENI 1333
            V  RLS+ DM P+ GCS  F++S+  FL++Y+  ++KT+    L++    +   A L+NI
Sbjct: 949  VRSRLSEQDMTPDGGCSMGFKSSIEQFLDEYVKALRKTQEAFLLNQSPGWEVKSATLQNI 1008

Query: 1332 ALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVA 1153
              +I G T RQL+VFL+TCI RYHSK+++AG A+G IGAQSIGEPGTQMTLKTFHFAGVA
Sbjct: 1009 VQNISGVTPRQLKVFLDTCISRYHSKKVDAGTAIGVIGAQSIGEPGTQMTLKTFHFAGVA 1068

Query: 1152 SMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKT 973
            SMNVTLGVPRIKEIIN AKNI TPIIT  L  DN+   AR+V GRIEKT LG+VA+ I+ 
Sbjct: 1069 SMNVTLGVPRIKEIINGAKNIHTPIITTVLECDNNPMIARMVAGRIEKTNLGQVAECIEI 1128

Query: 972  VLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIFPP 793
            V+ P  A++ VKLDM +I+   L I A  V +SIL TP++K+K +++RV D++ + +   
Sbjct: 1129 VMSPRAAYVEVKLDMAVIQDAHLSIDANVVKQSILGTPRIKLKHEHIRVPDNQTVEVHSH 1188

Query: 792  EADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQ---------------DKGKYNLLV 658
            E DR K++F L+ L++ LP VIV+GI T+ER VI++               D+ KY L  
Sbjct: 1189 EKDRRKLHFHLYYLKSILPNVIVRGIKTIERVVIDEEKVKRDKKDIDIKCGDEKKYKLFA 1248

Query: 657  EGTNLAAVMGTQGVDGINTKSNHVIEIEQTLGIEAARKCIIDEIQYTMASHGMSIDLRHM 478
            EG  L AVM T+GVDG  T SN +IE++QTLGIEAAR CII+EI+YTM SHGM+ID RHM
Sbjct: 1249 EGKGLLAVMSTKGVDGCKTTSNDIIEVQQTLGIEAARTCIIEEIKYTMKSHGMNIDDRHM 1308

Query: 477  MLLADVMTFKGQVLGITRFGIAKMKDSVLMLASFEKTTDHLFDASVHGRVDQIEGVSECX 298
            MLLADVMTF+G VLGITRFG+ +M  SVLMLASFE+T DHLF+ASV G VD+IEGVSE  
Sbjct: 1309 MLLADVMTFRGLVLGITRFGVQQMGKSVLMLASFERTDDHLFNASVQGTVDKIEGVSESI 1368

Query: 297  XXXXXXXXGTGLLKVRQRVDHL 232
                    GTG+ K++QR+  +
Sbjct: 1369 IMGIPMPIGTGMFKIKQRLPEM 1390


>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1394

 Score =  915 bits (2365), Expect = 0.0
 Identities = 485/742 (65%), Positives = 563/742 (75%), Gaps = 19/742 (2%)
 Frame = -1

Query: 2412 LGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARL 2233
            LGKATLGNGNK GL+S+LLRDYNAYAAA+CMNRLAKLSARWIGNHGFSIGIDDVQPG +L
Sbjct: 654  LGKATLGNGNKDGLYSILLRDYNAYAAATCMNRLAKLSARWIGNHGFSIGIDDVQPGKKL 713

Query: 2232 TAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLR 2053
              +K + ++ GY  C+K I  YN G+L L+ GC+A QTLE EIT  LNK+RE AG VC++
Sbjct: 714  IDEKGKTISNGYRHCNKLIADYNGGRLALKSGCDATQTLETEITERLNKLREEAGDVCMK 773

Query: 2052 ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPA 1873
            ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGG RAP+GFIDRSLPHFPR  K PA
Sbjct: 774  ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGSRAPDGFIDRSLPHFPRKSKTPA 833

Query: 1872 AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGT 1693
            AKGFVANSFY+GL+ATEFFFHTMGGREGLVDTAVKTA+TGYM+RRL K LEDL   YD T
Sbjct: 834  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMARRLSKGLEDLCVQYDNT 893

Query: 1692 VRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKR 1513
            V+ A   IVQFLYGDD +DP  MEGK G PLN DRL MK KATC A     LS S++S  
Sbjct: 894  VQDAGGGIVQFLYGDDGLDPAIMEGKAGVPLNFDRLFMKVKATCGAEEDEYLSPSDISNI 953

Query: 1512 VDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVK-KTRLTLGLSEEK-NNDPDLAGL- 1342
            V   L K++   +  CS +FR SL +FL      ++   +L  G+  E   N  ++ GL 
Sbjct: 954  VQSLLLKHNGTLDGICSESFRKSLSSFLGDQAKRLECLMKLVDGVEVENFENIKNVEGLT 1013

Query: 1341 ------ENIALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTL 1180
                  E IA  + G T +QLEVFL+TC+ RY  KR+E G A+GAIGAQSIGEPGTQMTL
Sbjct: 1014 GISKNTEKIAQKVSGITEKQLEVFLKTCLDRYVWKRIEPGTAIGAIGAQSIGEPGTQMTL 1073

Query: 1179 KTFHFAGVASMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVL 1000
            KTFHFAGVASMN+T GVPRIKEIIN AK ISTPIIT +L  +++V AARI+KGRI+KTVL
Sbjct: 1074 KTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITVELEHNSNVNAARIIKGRIQKTVL 1133

Query: 999  GEVAKSIKTVLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLD 820
            G+VAKSIK V+    A + V LDM+ I   QL + A  V E IL+TPK+K K Q + VL+
Sbjct: 1134 GQVAKSIKIVMTSRSASVKVTLDMKTIREAQLSLDANIVRELILETPKIKRKLQRINVLE 1193

Query: 819  HEKLHIFPPEADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDK----------GKY 670
              KL +F P  DR K++F LHSL+N LP V+VKGI TVER VI Q K           KY
Sbjct: 1194 DGKLEVF-PGGDRNKLHFELHSLKNMLPAVVVKGIKTVERVVIAQKKLDDAENDQGGPKY 1252

Query: 669  NLLVEGTNLAAVMGTQGVDGINTKSNHVIEIEQTLGIEAARKCIIDEIQYTMASHGMSID 490
            N+ VEG  L AVMGT+GVDG  TKSNH+IE+++TLGIEAARKCIIDEI+ TM SHGMSID
Sbjct: 1253 NMFVEGMGLQAVMGTEGVDGRKTKSNHIIEVQETLGIEAARKCIIDEIKGTMESHGMSID 1312

Query: 489  LRHMMLLADVMTFKGQVLGITRFGIAKMKDSVLMLASFEKTTDHLFDASVHGRVDQIEGV 310
            +RHMMLLADVMT +G VLGITRFGI KM  SVLMLASFEKT+DHLF+ASV G+ D+IEGV
Sbjct: 1313 IRHMMLLADVMTSRGVVLGITRFGIQKMDKSVLMLASFEKTSDHLFNASVKGKDDKIEGV 1372

Query: 309  SECXXXXXXXXXGTGLLKVRQR 244
            SEC         GTG+LK++QR
Sbjct: 1373 SECIIMGIPVAIGTGVLKIQQR 1394