BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00019473
         (1329 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sat...    58   8e-06

>gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|108708461|gb|ABF96256.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 1167

 Score = 58.2 bits (139), Expect = 8e-06
 Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
 Frame = +2

Query: 95  NYEI*KDKLMTMLKANNLLDVVLKGKKDAS----LYEEEK---------DAAAHTLISLS 235
           NY+I   K+ T+L +  L D+V  G ++ S    L  E+K         DA A  LI   
Sbjct: 13  NYDIWSIKMRTLLLSQGLWDIVENGYQEYSAGETLTAEQKKSLAEDRMSDAKALFLIQQG 72

Query: 236 ICEDISPIIRKEKNTKDIWLKFSNQF--GRKILP-RLRMLMSKLQNLKLQEDESSDKFIR 406
           + E + P I   K +K+ W K   +F   +K+L  +L+ L  + QNL ++E E    +  
Sbjct: 73  VAESLFPRIIGAKKSKEAWDKLKEEFQGSQKVLAVKLQTLRRQFQNLLMKESEKVKDYFS 132

Query: 407 KILELQQ*IEDQEKILTDDDIFHYILKSLSSKYNKFV 517
           +++E+   I    + + D  +   IL SL  KY   V
Sbjct: 133 RVIEIVNQIRLYGEDINDQKVVEEILISLPEKYEYIV 169