BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00019354
         (1303 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...    59   1e-16
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...    59   4e-16
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...    59   4e-16
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                              58   4e-16
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]            58   5e-16
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]               61   2e-15
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]               61   3e-15
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...    59   3e-15
gb|AFB73912.1| polyprotein [Citrus sinensis]                           58   9e-15
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]               61   9e-15
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]               60   1e-14
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...    55   5e-14
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...    52   9e-14
gb|AFB73911.1| polyprotein [Citrus sinensis]                           54   2e-13
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]    52   2e-12
ref|XP_003635668.1| PREDICTED: uncharacterized protein LOC100854...    52   2e-12
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                   60   2e-12
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]         50   3e-12
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote...    55   3e-12
emb|CCO30981.1| Retrovirus-related Pol polyprotein from transpos...    63   3e-12

>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score = 59.3 bits (142), Expect(2) = 1e-16
 Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 10/170 (5%)
 Frame = -3

Query: 482 QKRTYNGKN------SKTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDGRYN 321
           + RT N KN      SK+       +C  C   NHN   C             +   R N
Sbjct: 206 ENRTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDEC----------KKVQAKERKN 255

Query: 320 KSDKNLAEANIA---DFTNNQFYVFLTKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPV 150
           K D  ++ A+ A   D + +   VF   G +     W LDS C+ H+   +  F++ +PV
Sbjct: 256 KKDGKVSVASAAASDDDSGDCLVVFA--GCVAGHDEWILDSACSFHICTKRNWFSSYKPV 313

Query: 149 NKVIFVKIVGQEKLPIVGVGDIQLNFGK-TTIQLKNTYLVEGLRRSLISL 3
            K   V++       IVG+G +Q+      T  LKN   + G+ R+LISL
Sbjct: 314 QKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISL 363



 Score = 55.5 bits (132), Expect(2) = 1e-16
 Identities = 35/132 (26%), Positives = 65/132 (49%)
 Frame = -2

Query: 933 LRKDKLTKAFLKSSISTSILGLIQIEKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKL 754
           +RKD+   A ++  +   IL    IEK S  +W KL +I       +   ++ KL+ LK+
Sbjct: 50  IRKDQKALALIQLHLHNDILQECLIEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKM 109

Query: 753 PKNGSIAELVQSVTKIRDKLDKSGEPATPIDLFYSTLEALPDDWEHYKDNLLLLKNNMTF 574
            +  S+   +    KI   L          DL    L +LP+ + +++D +LL ++ +T 
Sbjct: 110 KEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTL 169

Query: 573 DDLCEALLDKEE 538
            ++ +AL +KE+
Sbjct: 170 KEVYDALQNKEK 181


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549942|gb|ABA92739.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1373

 Score = 59.3 bits (142), Expect(2) = 4e-16
 Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 10/170 (5%)
 Frame = -3

Query: 482 QKRTYNGKN------SKTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDGRYN 321
           + RT N KN      SK+       +C  C   NHN   C             +   R N
Sbjct: 206 ENRTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDEC----------KKVQAKERKN 255

Query: 320 KSDKNLAEANIA---DFTNNQFYVFLTKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPV 150
           K D  ++ A+ A   D + +   VF   G +     W LDS C+ H+   +  F++ +PV
Sbjct: 256 KKDGKVSVASAAASDDDSGDCLVVFA--GCVAGHDEWILDSACSFHICTKRNWFSSYKPV 313

Query: 149 NKVIFVKIVGQEKLPIVGVGDIQLNFGK-TTIQLKNTYLVEGLRRSLISL 3
            K   V++       IVG+G +Q+      T  LKN   + G+ R+LISL
Sbjct: 314 QKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISL 363



 Score = 53.5 bits (127), Expect(2) = 4e-16
 Identities = 34/132 (25%), Positives = 64/132 (48%)
 Frame = -2

Query: 933 LRKDKLTKAFLKSSISTSILGLIQIEKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKL 754
           +RKD+   A ++  +   IL     EK S  +W KL +I       +   ++ KL+ LK+
Sbjct: 50  IRKDQKALALIQLHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKM 109

Query: 753 PKNGSIAELVQSVTKIRDKLDKSGEPATPIDLFYSTLEALPDDWEHYKDNLLLLKNNMTF 574
            +  S+   +    KI   L          DL    L +LP+ + +++D +LL ++ +T 
Sbjct: 110 KEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTL 169

Query: 573 DDLCEALLDKEE 538
            ++ +AL +KE+
Sbjct: 170 KEVYDALQNKEK 181


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score = 59.3 bits (142), Expect(2) = 4e-16
 Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 10/170 (5%)
 Frame = -3

Query: 482 QKRTYNGKN------SKTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDGRYN 321
           + RT N KN      SK+       +C  C   NHN   C             +   R N
Sbjct: 206 ENRTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDEC----------KKVQAKERKN 255

Query: 320 KSDKNLAEANIA---DFTNNQFYVFLTKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPV 150
           K D  ++ A+ A   D + +   VF   G +     W LDS C+ H+   +  F++ +PV
Sbjct: 256 KKDGKVSVASAAASDDDSGDCLVVFA--GCVAGHDEWILDSACSFHICTKRNWFSSYKPV 313

Query: 149 NKVIFVKIVGQEKLPIVGVGDIQLNFGK-TTIQLKNTYLVEGLRRSLISL 3
            K   V++       IVG+G +Q+      T  LKN   + G+ R+LISL
Sbjct: 314 QKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISL 363



 Score = 53.5 bits (127), Expect(2) = 4e-16
 Identities = 34/132 (25%), Positives = 64/132 (48%)
 Frame = -2

Query: 933 LRKDKLTKAFLKSSISTSILGLIQIEKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKL 754
           +RKD+   A ++  +   IL     EK S  +W KL +I       +   ++ KL+ LK+
Sbjct: 50  IRKDQKALALIQLHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKM 109

Query: 753 PKNGSIAELVQSVTKIRDKLDKSGEPATPIDLFYSTLEALPDDWEHYKDNLLLLKNNMTF 574
            +  S+   +    KI   L          DL    L +LP+ + +++D +LL ++ +T 
Sbjct: 110 KEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTL 169

Query: 573 DDLCEALLDKEE 538
            ++ +AL +KE+
Sbjct: 170 KEVYDALQNKEK 181


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score = 58.2 bits (139), Expect(2) = 4e-16
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 4/167 (2%)
 Frame = -3

Query: 494 TQHKQKRTYNGKNS---KTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDGRY 324
           T  + + T  G++S   ++ + K+N  C+ CGK  H  K+C+  A   N  P        
Sbjct: 201 TVMRGRSTERGQSSGRGRSKSSKKNLTCYNCGKKGHLKKDCWNLAQNSN--PQGNVASTS 258

Query: 323 NKSDKNLAEANIADFTNNQFYVFLTKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPVNK 144
           +       EA+IA            +G  +   +W +DSG   HMT  K  F +  P++ 
Sbjct: 259 DDGSALCCEASIA-----------REGRKRFADIWLIDSGATYHMTSRKEWFHHYEPISG 307

Query: 143 VIFVKIVGQEKLPIVGVGDIQLNFGKTTIQ-LKNTYLVEGLRRSLIS 6
              V       L I+G+G I+L     T+Q +++   V+GL+++L+S
Sbjct: 308 G-SVYSCDDHALEIIGIGTIKLKMYDGTVQTVQDVRHVKGLKKNLLS 353



 Score = 54.7 bits (130), Expect(2) = 4e-16
 Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 4/174 (2%)
 Frame = -2

Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKID--AWLRKDKLTKAFLKSSISTSILGLIQIEK 853
            LW   ++  L  ++ L   + E P+   D   W   ++   A L  SI+  +L  I+ +K
Sbjct: 17   LWKLKVKAILRKDNCLAA-ISERPVDFTDDKKWSEMNEDAMADLYLSIADGVLSSIEEKK 75

Query: 852  YSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGEPA 673
             +  IW  L  +    S      L++KLY L++ ++ S+ E + ++  +  +L       
Sbjct: 76   TANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTEHLNTLNTLFSQLTSLSCKI 135

Query: 672  TPIDLFYSTLEALPDDWEHYKDNLL--LLKNNMTFDDLCEALLDKEETLKRKKN 517
             P +     L++LPD ++    NL   +L + + FDD+  A+L++E   K K++
Sbjct: 136  EPQERAELLLQSLPDSYDQLIINLTNNILTDYLVFDDVAAAVLEEESRRKNKED 189


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score = 58.2 bits (139), Expect(2) = 5e-16
 Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 10/170 (5%)
 Frame = -3

Query: 482 QKRTYNGKN------SKTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDGRYN 321
           + +T N KN      SK+       +C  C   NHN   C             +   R N
Sbjct: 208 ENKTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDEC----------KKVQAKERKN 257

Query: 320 KSDKNLAEANIA---DFTNNQFYVFLTKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPV 150
           K D  ++ A+ A   D + +   VF   G +     W LDS C+ H+   +  F++ +PV
Sbjct: 258 KKDGKVSVASAAVSDDDSGDCLVVFA--GCVAGHDEWILDSACSFHICTKRNWFSSYKPV 315

Query: 149 NKVIFVKIVGQEKLPIVGVGDIQLNFGK-TTIQLKNTYLVEGLRRSLISL 3
            K   V++       IVG+G +Q+      T  LKN   + G+ R+LISL
Sbjct: 316 QKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISL 365



 Score = 54.3 bits (129), Expect(2) = 5e-16
 Identities = 34/132 (25%), Positives = 64/132 (48%)
 Frame = -2

Query: 933 LRKDKLTKAFLKSSISTSILGLIQIEKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKL 754
           +RKD+   A ++  +   IL     EK S  +W KL +I       +   ++ KL+ LK+
Sbjct: 52  IRKDQKALALIQLHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKM 111

Query: 753 PKNGSIAELVQSVTKIRDKLDKSGEPATPIDLFYSTLEALPDDWEHYKDNLLLLKNNMTF 574
            +  S+   +    KI   L          DL    L +LP+ + +++D +LL ++ +T 
Sbjct: 112 KEEDSVITHIAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTL 171

Query: 573 DDLCEALLDKEE 538
            ++ +AL +KE+
Sbjct: 172 KEVYDALQNKEK 183


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 60.8 bits (146), Expect(2) = 2e-15
 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 6/175 (3%)
 Frame = -3

Query: 509 TEAYFTQHKQKRTYNGKNSKTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDG 330
           T    T+     + N   SK+  KK N  C+ CG   H  K C+          + KK+G
Sbjct: 202 TRGRSTERGPSGSQNHGRSKSRRKK-NIKCYGCGMKGHVKKECW----------NIKKNG 250

Query: 329 RYNKSDKNLAEANIADFTNNQFYVFL-----TKGELQITGMWYLDSGCNTHMTEDKTLFT 165
             N S+ + ++  +A  +++   ++      +KGE ++  +W +DSG   HMT  +  F 
Sbjct: 251 EKN-SEASTSQGCVASTSDDGEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFY 309

Query: 164 NLRPVNKVIFVKIVGQEKLPIVGVGDIQLNFGKTTI-QLKNTYLVEGLRRSLISL 3
           +  P+++   V +     L I GVG I+L     T+ +++    V+GL+++L+S+
Sbjct: 310 SYEPISEG-SVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSV 363



 Score = 49.7 bits (117), Expect(2) = 2e-15
 Identities = 40/177 (22%), Positives = 80/177 (45%), Gaps = 2/177 (1%)
 Frame = -2

Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWLRKDKLTKAFLKSSISTSILGLIQIEKYS 847
            LW   +   L  ++ L      L  +  + W   D    A L  +++ S+L  I  +K +
Sbjct: 17   LWKLKIRAILRKDNCLDAIDGRLADITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTA 76

Query: 846  FNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGEPATP 667
              IW  L  +    S      L+++LY L++ ++ S+ + + ++  +  +L  S      
Sbjct: 77   KEIWDTLIKLYEVKSLHNRIFLKRRLYTLQMGESTSVTDHINTLNTLFSQLTASDFKIAK 136

Query: 666  IDLFYSTLEALPDDWEHYKDNLL--LLKNNMTFDDLCEALLDKEETLKRKKNYRYRS 502
             +     L++LPD ++    N+    + + + FDD+  A+L++E    R+KN   RS
Sbjct: 137  NERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEE---SRRKNKEERS 190


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 60.8 bits (146), Expect(2) = 3e-15
 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 6/175 (3%)
 Frame = -3

Query: 509 TEAYFTQHKQKRTYNGKNSKTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDG 330
           T    T+     + N   SK+  KK N  C+ CG   H  K C+          + KK+G
Sbjct: 202 TRGRSTERGPSGSQNHGRSKSRRKK-NIKCYGCGMKGHVKKECW----------NIKKNG 250

Query: 329 RYNKSDKNLAEANIADFTNNQFYVFL-----TKGELQITGMWYLDSGCNTHMTEDKTLFT 165
             N S+ + ++  +A  +++   ++      +KGE ++  +W +DSG   HMT  +  F 
Sbjct: 251 EKN-SEASTSQGCVASTSDDGEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFF 309

Query: 164 NLRPVNKVIFVKIVGQEKLPIVGVGDIQLNFGKTTI-QLKNTYLVEGLRRSLISL 3
           +  P+++   V +     L I GVG I+L     T+ +++    V+GL+++L+S+
Sbjct: 310 SYEPISEG-SVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSV 363



 Score = 48.9 bits (115), Expect(2) = 3e-15
 Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 4/179 (2%)
 Frame = -2

Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWLRKDKLTKAFLKSSISTSILGLIQIEKYS 847
            LW   +   L  ++ L         +  + W   D    A L  +++ S+L  I  +K +
Sbjct: 17   LWKLKIRAILRKDNCLDAIDGRPADITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTA 76

Query: 846  FNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGEPATP 667
              IW  L  +    S      L+++LY L++ ++ S+ + + ++  +  +L  S      
Sbjct: 77   KEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAE 136

Query: 666  IDLFYSTLEALPDDWEHYKDNLLLLKNNMT----FDDLCEALLDKEETLKRKKNYRYRS 502
             +     L++LPD ++    N  +  NN+T    FDD+  A+L++E    R+KN   RS
Sbjct: 137  NERAELLLQSLPDSYDQLIIN--ITNNNITDTLHFDDVAGAILEEE---SRRKNKEERS 190


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score = 58.9 bits (141), Expect(2) = 3e-15
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 4/167 (2%)
 Frame = -2

Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWL----RKDKLTKAFLKSSISTSILGLIQI 859
            LW   M   L     L   L+     K   W     RKD+   + ++  +S  IL  +  
Sbjct: 19   LWQVKMRAVLAQTSDLDEALESFGKKKTTEWTTGEKRKDRKALSLIQLHLSNDILQEVLQ 78

Query: 858  EKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGE 679
            EK +  +W KL +I       +   ++ KL++ KL ++GS+   +    +I   L     
Sbjct: 79   EKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHISVFKEIVADLVSMEV 138

Query: 678  PATPIDLFYSTLEALPDDWEHYKDNLLLLKNNMTFDDLCEALLDKEE 538
                 DL    L +LP  +E+++D +LL ++ +T  ++ EAL ++E+
Sbjct: 139  QFDDEDLGLLLLCSLPSSYENFRDTILLSRDELTLAEVYEALQNREK 185



 Score = 50.8 bits (120), Expect(2) = 3e-15
 Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 8/168 (4%)
 Frame = -3

Query: 482 QKRTYNGKNSKTTNKKRNY-------YCHICGKNNHNTKNCFFNATGPNFKPSFKKDGRY 324
           ++RTYN  N +  +K R         +C  C K  H  K C+             ++   
Sbjct: 209 EQRTYNDSNDRDKSKSRGRSKSRGKKFCKYCKKKIHFIKECWK-----------LQNKEK 257

Query: 323 NKSDKNLAEANIADFTNNQFYVFLTKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPVNK 144
            KSD   +    A  +++   + +  G +     W LD+ C+ H+  ++  F++ + V  
Sbjct: 258 RKSDGKASVVTSAKNSDSGDCLVVFAGCVASHDEWILDTACSFHIYINRDWFSSYKSVQN 317

Query: 143 VIFVKIVGQEKLPIVGVGDIQL-NFGKTTIQLKNTYLVEGLRRSLISL 3
              V++       IVG+G +Q+      T  LK+   + G+ R+LISL
Sbjct: 318 GDVVRMGNDNPREIVGIGSVQIKTHDGITRTLKDVRHIPGMARNLISL 365


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score = 57.8 bits (138), Expect(2) = 9e-15
 Identities = 44/175 (25%), Positives = 84/175 (48%), Gaps = 6/175 (3%)
 Frame = -3

Query: 509 TEAYFTQHKQKRTYNGKNSKTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDG 330
           T    T+     + N   SK+ +KK N  C+ CGK  H  K C+ N          +++G
Sbjct: 202 TRGRSTERGPSGSQNHGRSKSRSKK-NVKCYNCGKKGHVKKECWSNQK--------RREG 252

Query: 329 RYNKSDKNLAEANIADFTNNQFYVF-----LTKGELQITGMWYLDSGCNTHMTEDKTLFT 165
           +  +S    A+  +A  +++   ++     +++G  +++ +W +DSG   HMT  +  F 
Sbjct: 253 KEPESSN--AQGCVASTSDDGEILYSEATIVSEGRKRLSDVWLIDSGATWHMTSRREWFH 310

Query: 164 NLRPVNKVIFVKIVGQEKLPIVGVGDIQLNFGKTTIQ-LKNTYLVEGLRRSLISL 3
              P++    V +     L I G+G I++     TI+ ++    V GL+++L+SL
Sbjct: 311 TYEPISGG-SVYMGNDHALEIAGIGTIKIKMFDGTIRTIEEVRHVNGLKKNLLSL 364



 Score = 50.4 bits (119), Expect(2) = 9e-15
 Identities = 38/174 (21%), Positives = 76/174 (43%), Gaps = 4/174 (2%)
 Frame = -2

Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWLRKDKLTKAFLKSSISTSILGLIQIEKYS 847
            LW   M+  L  N+ L    +    +  D W   D    + L  +++  +L  +  +  +
Sbjct: 17   LWKMKMKAVLRKNNCLAAIGERPMEITDDKWNEVDSNAISDLHLALADGVLSSVAEKNTA 76

Query: 846  FNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGEPATP 667
              IW  L  +    S      L++KLY L++ ++  + + + ++  +  +L   G     
Sbjct: 77   KEIWDTLTKLYEAKSLHNKIFLKRKLYTLRMAESTMVTDHINTLKTLFSQLTTLGHNIEE 136

Query: 666  IDLFYSTLEALPDDWEHYKDNLLLLKNN----MTFDDLCEALLDKEETLKRKKN 517
             +     L++LPD ++    N  L  NN    + FDD+  ++L++E   K K+N
Sbjct: 137  NERAELLLQSLPDSYDQLIIN--LTNNNPVDSLVFDDVAASVLNEESRRKNKEN 188


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 60.8 bits (146), Expect(2) = 9e-15
 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 6/175 (3%)
 Frame = -3

Query: 509 TEAYFTQHKQKRTYNGKNSKTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDG 330
           T    T+     + N   SK+  KK N  C+ CG   H  K C+          + KK+G
Sbjct: 202 TRGRSTERGPSGSQNHGRSKSRRKK-NIKCYGCGMKGHVKKECW----------NIKKNG 250

Query: 329 RYNKSDKNLAEANIADFTNNQFYVFL-----TKGELQITGMWYLDSGCNTHMTEDKTLFT 165
             N S+ + ++  +A  +++   ++      +KGE ++  +W +DSG   HMT  +  F 
Sbjct: 251 EKN-SEASTSQGCVASTSDDGEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFF 309

Query: 164 NLRPVNKVIFVKIVGQEKLPIVGVGDIQLNFGKTTI-QLKNTYLVEGLRRSLISL 3
           +  P+++   V +     L I GVG I+L     T+ +++    V+GL+++L+S+
Sbjct: 310 SYEPISEG-SVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSV 363



 Score = 47.4 bits (111), Expect(2) = 9e-15
 Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 2/177 (1%)
 Frame = -2

Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWLRKDKLTKAFLKSSISTSILGLIQIEKYS 847
            LW   +   L  ++ L         +  + W   D    A L  +++ S+L  I  +K +
Sbjct: 17   LWKLKIRAILRKDNCLDAIDGRPADITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTA 76

Query: 846  FNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGEPATP 667
              IW  L  +    S      L+++LY L++ ++ S+ + + ++  +  +L  S      
Sbjct: 77   KEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAE 136

Query: 666  IDLFYSTLEALPDDWEHYKDNLL--LLKNNMTFDDLCEALLDKEETLKRKKNYRYRS 502
             +     L++LPD ++    N+    + + + FDD+  A+L++E    R+KN   RS
Sbjct: 137  NERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEE---SRRKNKEERS 190


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 60.5 bits (145), Expect(2) = 1e-14
 Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 6/175 (3%)
 Frame = -3

Query: 509 TEAYFTQHKQKRTYNGKNSKTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDG 330
           T    T+     + N   SK+  +K N  C+ CG   H  K C+ N          KK+G
Sbjct: 202 TRGRSTERGPSGSQNHGRSKS-RRKNNIKCYGCGMKGHVKKECWNN----------KKNG 250

Query: 329 RYNKSDKNLAEANIADFTNNQFYVFL-----TKGELQITGMWYLDSGCNTHMTEDKTLFT 165
             N S+   ++  +A  +++   ++      ++GE Q+  +W +DSG   HMT  +  F 
Sbjct: 251 EKN-SEATTSQGCVASTSDDGEILYSEAATSSEGERQLNDVWIMDSGATWHMTPHRDWFY 309

Query: 164 NLRPVNKVIFVKIVGQEKLPIVGVGDIQLNFGKTTI-QLKNTYLVEGLRRSLISL 3
           +  P+++   V +     L I GVG I+L     T+ +++    V+GL+++L+S+
Sbjct: 310 SYEPISEG-SVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSV 363



 Score = 47.4 bits (111), Expect(2) = 1e-14
 Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 2/177 (1%)
 Frame = -2

Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWLRKDKLTKAFLKSSISTSILGLIQIEKYS 847
            LW   +   L  ++ L         +  + W   D    A L  +++ S+L  I  +K +
Sbjct: 17   LWKLKIRAILRKDNCLDAIDGRPADITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTA 76

Query: 846  FNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGEPATP 667
              IW  L  +    S      L+++LY L++ ++ S+ + + ++  +  +L  S      
Sbjct: 77   KEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAE 136

Query: 666  IDLFYSTLEALPDDWEHYKDNLL--LLKNNMTFDDLCEALLDKEETLKRKKNYRYRS 502
             +     L++LPD ++    N+    + + + FDD+  A+L++E    R+KN   RS
Sbjct: 137  NERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEE---SRRKNKEERS 190


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
            gi|108708632|gb|ABF96427.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1326

 Score = 55.1 bits (131), Expect(2) = 5e-14
 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 4/167 (2%)
 Frame = -2

Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWL----RKDKLTKAFLKSSISTSILGLIQI 859
            LW   M   L     L   L+     K   W     RKD+     ++  +S  IL  +  
Sbjct: 19   LWQVKMRAILAQTSDLDEALESFGKKKSTEWTAEEKRKDRKALLLIQLHLSNDILQEVLQ 78

Query: 858  EKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGE 679
            EK +  +W KL +I       +   ++ KL++ KL ++GS+   +    +I   L     
Sbjct: 79   EKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHISVFKEIVVDLVSIEV 138

Query: 678  PATPIDLFYSTLEALPDDWEHYKDNLLLLKNNMTFDDLCEALLDKEE 538
                 DL    L +LP  + +++D +LL ++ +T  ++ EAL ++E+
Sbjct: 139  QFDDEDLGLLLLCSLPSSYANFRDTILLSRDELTLAEVYEALQNREK 185



 Score = 50.4 bits (119), Expect(2) = 5e-14
 Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 8/168 (4%)
 Frame = -3

Query: 482 QKRTYNGKNSKTTNKKRNY-------YCHICGKNNHNTKNCFFNATGPNFKPSFKKDGRY 324
           ++RTYN  + +  ++ R         +C  C K NH  + C+             ++   
Sbjct: 209 EQRTYNDSSDRDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWK-----------LQNKEK 257

Query: 323 NKSDKNLAEANIADFTNNQFYVFLTKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPVNK 144
            KSD   +    A+ +++   + +  G +     W LD+ C+ H+  ++  F++ + V  
Sbjct: 258 RKSDGKASVVTSAENSDSGDCLVVFAGCVASHDEWILDTACSFHICINRDWFSSYKSVQN 317

Query: 143 VIFVKIVGQEKLPIVGVGDIQL-NFGKTTIQLKNTYLVEGLRRSLISL 3
              V++       IVG+G +Q+      T  LK+   + G+ R+LISL
Sbjct: 318 GDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISL 365


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score = 52.4 bits (124), Expect(2) = 9e-14
 Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 4/175 (2%)
 Frame = -2

Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWL----RKDKLTKAFLKSSISTSILGLIQI 859
            LW   M   L     L   L+     K   W     RKD+   + ++  +S  IL  +  
Sbjct: 19   LWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLIQLHLSNDILQEVLQ 78

Query: 858  EKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGE 679
            +K +  +W KL +I       +   ++ KL++ KL ++GS+   +    +I   L     
Sbjct: 79   KKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLHESGSVLNHISVFKEIVADLVSMEV 138

Query: 678  PATPIDLFYSTLEALPDDWEHYKDNLLLLKNNMTFDDLCEALLDKEETLKRKKNY 514
                 DL    L +LP  + +++  +LL ++ +T  ++ EAL ++E+     ++Y
Sbjct: 139  QFDDEDLGLLLLCSLPSSYANFRHTILLSRDELTLAEVYEALQNREKMKGMVQSY 193



 Score = 52.4 bits (124), Expect(2) = 9e-14
 Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 8/168 (4%)
 Frame = -3

Query: 482 QKRTYNGKNSKTTNKKRNY-------YCHICGKNNHNTKNCFFNATGPNFKPSFKKDGRY 324
           ++RTYN  N    ++ R         +C  C K NH  + C+             ++   
Sbjct: 209 EQRTYNDSNDHDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWK-----------LQNKEK 257

Query: 323 NKSDKNLAEANIADFTNNQFYVFLTKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPVNK 144
            KSD   +    A+ +++   + +  G +     W LD+ C+ H+  ++  F++ + V  
Sbjct: 258 RKSDGKASVVTSAENSDSGDCLVVFAGYVASHDEWILDTACSFHICINRDWFSSYKSVQN 317

Query: 143 VIFVKIVGQEKLPIVGVGDIQL-NFGKTTIQLKNTYLVEGLRRSLISL 3
              V++       IVG+G +Q+      T  LK+   + G+ R+LISL
Sbjct: 318 EDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISL 365


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score = 54.3 bits (129), Expect(2) = 2e-13
 Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 6/175 (3%)
 Frame = -3

Query: 509 TEAYFTQHKQKRTYNGKNSKTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDG 330
           T    T+     + N   SK   KK N  C+ CGK  H  K C+ N          +++G
Sbjct: 202 TRGRSTERGPSGSQNQGRSKFRGKK-NVKCYNCGKKGHVKKECWSNQK--------RREG 252

Query: 329 RYNKSDKNLAEANIADFTNNQFYVF-----LTKGELQITGMWYLDSGCNTHMTEDKTLFT 165
           +  + + + A+  +A  +++   ++     +++G  +++ +W +DSG   HMT  +  F 
Sbjct: 253 K--EPETSNAQGCVASTSDDGEILYSEATTVSEGRKRLSDVWLIDSGATWHMTSRREWFH 310

Query: 164 NLRPVNKVIFVKIVGQEKLPIVGVGDIQLNFGKTTIQ-LKNTYLVEGLRRSLISL 3
              P++    V +     L I G+G I++     TI+ +     V GL+++L+SL
Sbjct: 311 TYEPISGG-SVYMGNDHALEIAGIGTIKIKMFDGTIRTIGEVRHVNGLKKNLLSL 364



 Score = 49.7 bits (117), Expect(2) = 2e-13
 Identities = 38/174 (21%), Positives = 76/174 (43%), Gaps = 4/174 (2%)
 Frame = -2

Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWLRKDKLTKAFLKSSISTSILGLIQIEKYS 847
            LW   M+  L  N+ L    +    +  D W   D    + L  +++  +L  +  +  +
Sbjct: 17   LWKMKMKAVLRKNNCLAAIGERPMEITDDKWNEVDGNAISDLHLALADGVLSSVAEKNTA 76

Query: 846  FNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGEPATP 667
              IW  L  +    S      L++KLY L++ ++  + + + ++  +  +L   G     
Sbjct: 77   KEIWDTLTKLYEAKSLHNKIFLKRKLYTLRMAESTMVTDHINTLKTLFSQLTTLGHNIEE 136

Query: 666  IDLFYSTLEALPDDWEHYKDNLLLLKNN----MTFDDLCEALLDKEETLKRKKN 517
             +     L++LPD ++    N  L  NN    + FDD+  ++L++E   K K+N
Sbjct: 137  NERAELLLQSLPDSYDQLIIN--LTNNNPVESLVFDDVAASVLNEESRRKNKEN 188


>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
          Length = 1316

 Score = 52.4 bits (124), Expect(2) = 2e-12
 Identities = 37/179 (20%), Positives = 77/179 (43%), Gaps = 11/179 (6%)
 Frame = -2

Query: 1023 WSQTMETFLDANDMLKFFLQELPILK-----------IDAWLRKDKLTKAFLKSSISTSI 877
            W Q M  +L   ++ +F  ++ P LK           IDAW   D L + ++ + ++ S+
Sbjct: 52   WQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSL 111

Query: 876  LGLIQIEKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDK 697
              +   +K +  +W  L        A A   +  +  + K+  + ++   VQ +  I  +
Sbjct: 112  YNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHE 171

Query: 696  LDKSGEPATPIDLFYSTLEALPDDWEHYKDNLLLLKNNMTFDDLCEALLDKEETLKRKK 520
            +   G   +      + +E LP  W+ +K+ L   +  M+ +DL   L  +E+  + +K
Sbjct: 172  IHAEGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEK 230



 Score = 48.1 bits (113), Expect(2) = 2e-12
 Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 20/189 (10%)
 Frame = -3

Query: 512 DTEAYFTQHKQK---RTYN--GKNSKT-----TNKKRNYY--CHICGKNNHNTKNCFFNA 369
           + +A F +H Q    +T N  GK SK       +KK  +   C  CGK  H + +C    
Sbjct: 238 EAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDC---- 293

Query: 368 TGPNFKPSFKKDGRYNKSDKNLAEANIADFTNNQFYVFLTK--GELQITGM----WYLDS 207
                        R  K +K      I D T N + + LT    E+ + G     W++D+
Sbjct: 294 -------------RLPKKNKPKEANVIDDITKNVYDIDLTAVVSEVNLVGSNPKEWWIDT 340

Query: 206 GCNTHMTEDKTLFTNLRPVNKVIFVKIVGQEKLPIVGVGDI--QLNFGKTTIQLKNTYLV 33
           G   H+  DK +F+   P+     V +       I G G +  ++  GK  + L N   V
Sbjct: 341 GATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKMTSGK-ELTLTNVLYV 399

Query: 32  EGLRRSLIS 6
             +R++L+S
Sbjct: 400 PEIRKNLVS 408


>ref|XP_003635668.1| PREDICTED: uncharacterized protein LOC100854178, partial [Vitis
            vinifera]
          Length = 478

 Score = 52.4 bits (124), Expect(2) = 2e-12
 Identities = 37/179 (20%), Positives = 77/179 (43%), Gaps = 11/179 (6%)
 Frame = -2

Query: 1023 WSQTMETFLDANDMLKFFLQELPILK-----------IDAWLRKDKLTKAFLKSSISTSI 877
            W Q M  +L   ++ +F  ++ P LK           IDAW   D L + ++ + ++ S+
Sbjct: 52   WQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSL 111

Query: 876  LGLIQIEKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDK 697
              +   +K +  +W  L        A A   +  +  + K+  + ++   VQ +  I  +
Sbjct: 112  YNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHE 171

Query: 696  LDKSGEPATPIDLFYSTLEALPDDWEHYKDNLLLLKNNMTFDDLCEALLDKEETLKRKK 520
            +   G   +      + +E LP  W+ +K+ L   +  M+ +DL   L  +E+  + +K
Sbjct: 172  IHAEGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEK 230



 Score = 48.1 bits (113), Expect(2) = 2e-12
 Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 20/189 (10%)
 Frame = -3

Query: 512 DTEAYFTQHKQK---RTYN--GKNSKT-----TNKKRNYY--CHICGKNNHNTKNCFFNA 369
           + +A F +H Q    +T N  GK SK       +KK  +   C  CGK  H + +C    
Sbjct: 238 EAKANFVEHGQSSNAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDC---- 293

Query: 368 TGPNFKPSFKKDGRYNKSDKNLAEANIADFTNNQFYVFLTK--GELQITGM----WYLDS 207
                        R  K +K      I D T N + + LT    E+ + G     W++D+
Sbjct: 294 -------------RLPKKNKPKEANVIDDITKNVYDIDLTTVVSEVNLVGSNPKEWWIDT 340

Query: 206 GCNTHMTEDKTLFTNLRPVNKVIFVKIVGQEKLPIVGVGDI--QLNFGKTTIQLKNTYLV 33
           G   H+  DK +F+   P+     V +       I G G +  ++  GK  + L N   V
Sbjct: 341 GATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKMTSGK-ELTLTNVLYV 399

Query: 32  EGLRRSLIS 6
             +R++L+S
Sbjct: 400 PEIRKNLVS 408


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score = 60.1 bits (144), Expect(2) = 2e-12
 Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 6/155 (3%)
 Frame = -3

Query: 449 TTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDGRYNKSDKNLAEANIADFTNN 270
           T+ +K N  C+ CGK  H  K+C+ N          KK G    S+ + ++  +A  +++
Sbjct: 221 TSRRKTNLKCYNCGKRGHLKKDCWSN----------KKSGE-KSSEASTSQGCVASTSDD 269

Query: 269 QFYVFL-----TKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPVNKVIFVKIVGQEKLP 105
              ++      TKG+ ++T +W +DSG   HMT  +  F    PV++   V +     L 
Sbjct: 270 GEVLYSEAAVSTKGKNRLTDVWIVDSGATWHMTPRRDWFCTYEPVSEG-NVFMGNDHALE 328

Query: 104 IVGVGDIQLNFGKTTIQ-LKNTYLVEGLRRSLISL 3
           IVG+G +++     TI+ L+    V+ L ++L+S+
Sbjct: 329 IVGIGTVKIKMYDGTIRTLQEVRHVKELAKNLLSV 363



 Score = 40.0 bits (92), Expect(2) = 2e-12
 Identities = 34/172 (19%), Positives = 77/172 (44%), Gaps = 2/172 (1%)
 Frame = -2

Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWLRKDKLTKAFLKSSISTSILGLIQIEKYS 847
            LW   ++  L  ++ L         +  D     D    A L  +++ S+L  I  +K +
Sbjct: 17   LWKLKIKAILRKDNCLPAIDGRPADITDDKRKEMDDNAVANLHLAVADSVLSSIAEKKTA 76

Query: 846  FNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGEPATP 667
              IW  L  +    S      L+++LY  ++ ++ S+ + + ++  +  +L  S      
Sbjct: 77   KKIWDTLIQLYEVKSLHNRIFLKRRLYTFRMSESTSMPDHINNLNTMFAQLSASDFTIGE 136

Query: 666  IDLFYSTLEALPDDWEHYKDNLL--LLKNNMTFDDLCEALLDKEETLKRKKN 517
             +     L++LPD ++    N+    + + ++F+D+  A+L++E   K K++
Sbjct: 137  NERAEVLLQSLPDSYDQLVINITNNNIVDRLSFNDVAGAILEEESRRKNKED 188


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score = 50.1 bits (118), Expect(2) = 3e-12
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
 Frame = -2

Query: 894 SISTSILGLIQIEKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSV 715
           S+  SIL  I  EK +  IW K+ T+    S A    L+K+LY   + +  +I + + + 
Sbjct: 68  SLGDSILREISEEKTALGIWNKVETLCMKKSLAHRLFLKKRLYTFSMREGVTIQDHIDTF 127

Query: 714 TKIRDKLDKSGEPATPI---DLFYSTLEALPDDWEHYKDNLLLLKNNMTFDDLCEALLDK 544
            KI   LD  G     I   D  +  L +LP  +E + D +L  +  +T +D+  +L  K
Sbjct: 128 NKI--ILDLEGVENVKICDEDKAFFLLSSLPKSYEGFVDTMLYGRTTLTLEDVKASLSSK 185

Query: 543 E 541
           E
Sbjct: 186 E 186



 Score = 49.7 bits (117), Expect(2) = 3e-12
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
 Frame = -3

Query: 491 QHKQKRTYNGKNSKTTNKKRNYY-CHICGKNNHNTKNCFFNATGPNFKPSFKKDGRYNKS 315
           ++K +   +GKN +T +KK+    C  C K  H  ++CF            KK+ +    
Sbjct: 212 KNKNQGKGHGKNQETADKKKKKRKCFYCRKEGHYIRDCFEKK---------KKESQEKSG 262

Query: 314 DKNLAEANIADFTNNQFYVFLTKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPVN 147
           D  +A  + +D    Q    L        G W +DSGC+ H+  +KTLF     V+
Sbjct: 263 DAAVASDDGSD--GYQSADLLVASNSNTKGQWVIDSGCSFHLCPEKTLFYKYEAVD 316


>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
            Group] gi|22655747|gb|AAN04164.1| Putative
            retrotransposon protein [Oryza sativa Japonica Group]
            gi|31431214|gb|AAP53029.1| retrotransposon protein,
            putative, Ty1-copia subclass, expressed [Oryza sativa
            Japonica Group]
          Length = 1229

 Score = 55.1 bits (131), Expect(2) = 3e-12
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 4/167 (2%)
 Frame = -2

Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWL----RKDKLTKAFLKSSISTSILGLIQI 859
            LW   M   L     L   L+     K   W     RKD+   + ++  +S  IL  +  
Sbjct: 16   LWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLIQLHLSNDILQKVLQ 75

Query: 858  EKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGE 679
            EK +  +W KL +I       +   ++ KL++ KL ++GS+   +    +I   L     
Sbjct: 76   EKTAAELWFKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHISVFKEIIADLVSMEV 135

Query: 678  PATPIDLFYSTLEALPDDWEHYKDNLLLLKNNMTFDDLCEALLDKEE 538
                 DL    L +LP  + +++D +LL ++ +T  ++ EAL ++E+
Sbjct: 136  QFDDEDLGLLLLCSLPSLYANFRDTILLSRDELTLAEVYEALQNREK 182



 Score = 44.7 bits (104), Expect(2) = 3e-12
 Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 8/168 (4%)
 Frame = -3

Query: 482 QKRTYNGKNSKTTNKKRNY-------YCHICGKNNHNTKNCFFNATGPNFKPSFKKDGRY 324
           ++RTYN  N +  ++ R         +C  C K NH  + C+             ++   
Sbjct: 206 EQRTYNDSNDRDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWK-----------LQNKEK 254

Query: 323 NKSDKNLAEANIADFTNNQFYVFLTKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPVNK 144
            KSD   +    A+ +++   +    G +     W LD+ C   +  ++  F++ + V  
Sbjct: 255 RKSDGKASVVTSAENSDSADCLVFFAGCVASHDEWILDTACLFLICINRDWFSSHKSVQN 314

Query: 143 VIFVKIVGQEKLPIVGVGDIQL-NFGKTTIQLKNTYLVEGLRRSLISL 3
              V++       I+G+G +Q+      T  LK+   + G+ R+LISL
Sbjct: 315 GDVVRMGDNNPREIMGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISL 362


>emb|CCO30981.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           Includes: RecName: Full=Protease [Rhizoctonia solani
           AG-1 IB]
          Length = 621

 Score = 62.8 bits (151), Expect(2) = 3e-12
 Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 20/187 (10%)
 Frame = -3

Query: 503 AYFTQHKQKRTYNGKNSKTTNKKRNYY-----CHICGKNNHNTKNCFFNA-----TGPNF 354
           A F+QH  K   +  N K++NKK+N       C  CGK  H+   C+        TGP+ 
Sbjct: 220 AMFSQHLSKSKQS--NGKSSNKKKNKKDKGPACLNCGKGGHSKAECWAKGGGAEGTGPHQ 277

Query: 353 KPSFKKDGRYNKSDKNLAE-----ANIADFTNNQFYVFLTKGELQITGMWYLDSGCNTHM 189
           +   +K  +  +S           A  ++    Q Y          T  W LDSG + HM
Sbjct: 278 RKKAEKQAKDKESSSTTKSESAKVAVTSEPIQTQLYALPAIDSYSPTDSWLLDSGASRHM 337

Query: 188 TEDKTLFTNLRPVNKVIFVKIVGQEKLPIVGVGDIQLNF----GK-TTIQLKNTYLVEGL 24
           T ++  F    P+   + V+I   +++P  G+G I +      GK T   +K    V  L
Sbjct: 338 TPNRQWFATYCPLASPVSVRIGNGKQIPAAGIGRIFVTLRNRQGKDTEAVIKEVLHVPDL 397

Query: 23  RRSLISL 3
           + +LIS+
Sbjct: 398 QANLISV 404



 Score = 37.0 bits (84), Expect(2) = 3e-12
 Identities = 19/105 (18%), Positives = 49/105 (46%)
 Frame = -2

Query: 936 WLRKDKLTKAFLKSSISTSILGLIQIEKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLK 757
           W ++D+   A +  ++    +  +   + + + W+K+     G    +++ L ++L   K
Sbjct: 75  WKKRDREAYAQITLNMEDEAMADVMRTRTARDAWKKVIERWEGKGVQSLSFLYQQLTTAK 134

Query: 756 LPKNGSIAELVQSVTKIRDKLDKSGEPATPIDLFYSTLEALPDDW 622
           + ++  IA    ++  +  K++  GEP + + L    + ALP  +
Sbjct: 135 IEEDEDIATAFNNIRSLAKKMETLGEPISDLMLAQMMMTALPPSY 179