BLASTX nr result
ID: Ephedra26_contig00019354
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra26_contig00019354 (1303 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 59 1e-16 gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 59 4e-16 gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 59 4e-16 dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 58 4e-16 emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 58 5e-16 gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 61 2e-15 gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 61 3e-15 gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 59 3e-15 gb|AFB73912.1| polyprotein [Citrus sinensis] 58 9e-15 gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 61 9e-15 gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 60 1e-14 gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 55 5e-14 gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 52 9e-14 gb|AFB73911.1| polyprotein [Citrus sinensis] 54 2e-13 emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera] 52 2e-12 ref|XP_003635668.1| PREDICTED: uncharacterized protein LOC100854... 52 2e-12 gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 60 2e-12 emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 50 3e-12 gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote... 55 3e-12 emb|CCO30981.1| Retrovirus-related Pol polyprotein from transpos... 63 3e-12 >gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1333 Score = 59.3 bits (142), Expect(2) = 1e-16 Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 10/170 (5%) Frame = -3 Query: 482 QKRTYNGKN------SKTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDGRYN 321 + RT N KN SK+ +C C NHN C + R N Sbjct: 206 ENRTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDEC----------KKVQAKERKN 255 Query: 320 KSDKNLAEANIA---DFTNNQFYVFLTKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPV 150 K D ++ A+ A D + + VF G + W LDS C+ H+ + F++ +PV Sbjct: 256 KKDGKVSVASAAASDDDSGDCLVVFA--GCVAGHDEWILDSACSFHICTKRNWFSSYKPV 313 Query: 149 NKVIFVKIVGQEKLPIVGVGDIQLNFGK-TTIQLKNTYLVEGLRRSLISL 3 K V++ IVG+G +Q+ T LKN + G+ R+LISL Sbjct: 314 QKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISL 363 Score = 55.5 bits (132), Expect(2) = 1e-16 Identities = 35/132 (26%), Positives = 65/132 (49%) Frame = -2 Query: 933 LRKDKLTKAFLKSSISTSILGLIQIEKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKL 754 +RKD+ A ++ + IL IEK S +W KL +I + ++ KL+ LK+ Sbjct: 50 IRKDQKALALIQLHLHNDILQECLIEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKM 109 Query: 753 PKNGSIAELVQSVTKIRDKLDKSGEPATPIDLFYSTLEALPDDWEHYKDNLLLLKNNMTF 574 + S+ + KI L DL L +LP+ + +++D +LL ++ +T Sbjct: 110 KEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTL 169 Query: 573 DDLCEALLDKEE 538 ++ +AL +KE+ Sbjct: 170 KEVYDALQNKEK 181 >gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa Japonica Group] gi|77549942|gb|ABA92739.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1373 Score = 59.3 bits (142), Expect(2) = 4e-16 Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 10/170 (5%) Frame = -3 Query: 482 QKRTYNGKN------SKTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDGRYN 321 + RT N KN SK+ +C C NHN C + R N Sbjct: 206 ENRTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDEC----------KKVQAKERKN 255 Query: 320 KSDKNLAEANIA---DFTNNQFYVFLTKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPV 150 K D ++ A+ A D + + VF G + W LDS C+ H+ + F++ +PV Sbjct: 256 KKDGKVSVASAAASDDDSGDCLVVFA--GCVAGHDEWILDSACSFHICTKRNWFSSYKPV 313 Query: 149 NKVIFVKIVGQEKLPIVGVGDIQLNFGK-TTIQLKNTYLVEGLRRSLISL 3 K V++ IVG+G +Q+ T LKN + G+ R+LISL Sbjct: 314 QKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISL 363 Score = 53.5 bits (127), Expect(2) = 4e-16 Identities = 34/132 (25%), Positives = 64/132 (48%) Frame = -2 Query: 933 LRKDKLTKAFLKSSISTSILGLIQIEKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKL 754 +RKD+ A ++ + IL EK S +W KL +I + ++ KL+ LK+ Sbjct: 50 IRKDQKALALIQLHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKM 109 Query: 753 PKNGSIAELVQSVTKIRDKLDKSGEPATPIDLFYSTLEALPDDWEHYKDNLLLLKNNMTF 574 + S+ + KI L DL L +LP+ + +++D +LL ++ +T Sbjct: 110 KEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTL 169 Query: 573 DDLCEALLDKEE 538 ++ +AL +KE+ Sbjct: 170 KEVYDALQNKEK 181 >gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1333 Score = 59.3 bits (142), Expect(2) = 4e-16 Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 10/170 (5%) Frame = -3 Query: 482 QKRTYNGKN------SKTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDGRYN 321 + RT N KN SK+ +C C NHN C + R N Sbjct: 206 ENRTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDEC----------KKVQAKERKN 255 Query: 320 KSDKNLAEANIA---DFTNNQFYVFLTKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPV 150 K D ++ A+ A D + + VF G + W LDS C+ H+ + F++ +PV Sbjct: 256 KKDGKVSVASAAASDDDSGDCLVVFA--GCVAGHDEWILDSACSFHICTKRNWFSSYKPV 313 Query: 149 NKVIFVKIVGQEKLPIVGVGDIQLNFGK-TTIQLKNTYLVEGLRRSLISL 3 K V++ IVG+G +Q+ T LKN + G+ R+LISL Sbjct: 314 QKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISL 363 Score = 53.5 bits (127), Expect(2) = 4e-16 Identities = 34/132 (25%), Positives = 64/132 (48%) Frame = -2 Query: 933 LRKDKLTKAFLKSSISTSILGLIQIEKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKL 754 +RKD+ A ++ + IL EK S +W KL +I + ++ KL+ LK+ Sbjct: 50 IRKDQKALALIQLHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKM 109 Query: 753 PKNGSIAELVQSVTKIRDKLDKSGEPATPIDLFYSTLEALPDDWEHYKDNLLLLKNNMTF 574 + S+ + KI L DL L +LP+ + +++D +LL ++ +T Sbjct: 110 KEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTL 169 Query: 573 DDLCEALLDKEE 538 ++ +AL +KE+ Sbjct: 170 KEVYDALQNKEK 181 >dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] Length = 1298 Score = 58.2 bits (139), Expect(2) = 4e-16 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 4/167 (2%) Frame = -3 Query: 494 TQHKQKRTYNGKNS---KTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDGRY 324 T + + T G++S ++ + K+N C+ CGK H K+C+ A N P Sbjct: 201 TVMRGRSTERGQSSGRGRSKSSKKNLTCYNCGKKGHLKKDCWNLAQNSN--PQGNVASTS 258 Query: 323 NKSDKNLAEANIADFTNNQFYVFLTKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPVNK 144 + EA+IA +G + +W +DSG HMT K F + P++ Sbjct: 259 DDGSALCCEASIA-----------REGRKRFADIWLIDSGATYHMTSRKEWFHHYEPISG 307 Query: 143 VIFVKIVGQEKLPIVGVGDIQLNFGKTTIQ-LKNTYLVEGLRRSLIS 6 V L I+G+G I+L T+Q +++ V+GL+++L+S Sbjct: 308 G-SVYSCDDHALEIIGIGTIKLKMYDGTVQTVQDVRHVKGLKKNLLS 353 Score = 54.7 bits (130), Expect(2) = 4e-16 Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 4/174 (2%) Frame = -2 Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKID--AWLRKDKLTKAFLKSSISTSILGLIQIEK 853 LW ++ L ++ L + E P+ D W ++ A L SI+ +L I+ +K Sbjct: 17 LWKLKVKAILRKDNCLAA-ISERPVDFTDDKKWSEMNEDAMADLYLSIADGVLSSIEEKK 75 Query: 852 YSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGEPA 673 + IW L + S L++KLY L++ ++ S+ E + ++ + +L Sbjct: 76 TANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTEHLNTLNTLFSQLTSLSCKI 135 Query: 672 TPIDLFYSTLEALPDDWEHYKDNLL--LLKNNMTFDDLCEALLDKEETLKRKKN 517 P + L++LPD ++ NL +L + + FDD+ A+L++E K K++ Sbjct: 136 EPQERAELLLQSLPDSYDQLIINLTNNILTDYLVFDDVAAAVLEEESRRKNKED 189 >emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] Length = 1335 Score = 58.2 bits (139), Expect(2) = 5e-16 Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 10/170 (5%) Frame = -3 Query: 482 QKRTYNGKN------SKTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDGRYN 321 + +T N KN SK+ +C C NHN C + R N Sbjct: 208 ENKTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDEC----------KKVQAKERKN 257 Query: 320 KSDKNLAEANIA---DFTNNQFYVFLTKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPV 150 K D ++ A+ A D + + VF G + W LDS C+ H+ + F++ +PV Sbjct: 258 KKDGKVSVASAAVSDDDSGDCLVVFA--GCVAGHDEWILDSACSFHICTKRNWFSSYKPV 315 Query: 149 NKVIFVKIVGQEKLPIVGVGDIQLNFGK-TTIQLKNTYLVEGLRRSLISL 3 K V++ IVG+G +Q+ T LKN + G+ R+LISL Sbjct: 316 QKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISL 365 Score = 54.3 bits (129), Expect(2) = 5e-16 Identities = 34/132 (25%), Positives = 64/132 (48%) Frame = -2 Query: 933 LRKDKLTKAFLKSSISTSILGLIQIEKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKL 754 +RKD+ A ++ + IL EK S +W KL +I + ++ KL+ LK+ Sbjct: 52 IRKDQKALALIQLHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKM 111 Query: 753 PKNGSIAELVQSVTKIRDKLDKSGEPATPIDLFYSTLEALPDDWEHYKDNLLLLKNNMTF 574 + S+ + KI L DL L +LP+ + +++D +LL ++ +T Sbjct: 112 KEEDSVITHIAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTL 171 Query: 573 DDLCEALLDKEE 538 ++ +AL +KE+ Sbjct: 172 KEVYDALQNKEK 183 >gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] Length = 1305 Score = 60.8 bits (146), Expect(2) = 2e-15 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 6/175 (3%) Frame = -3 Query: 509 TEAYFTQHKQKRTYNGKNSKTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDG 330 T T+ + N SK+ KK N C+ CG H K C+ + KK+G Sbjct: 202 TRGRSTERGPSGSQNHGRSKSRRKK-NIKCYGCGMKGHVKKECW----------NIKKNG 250 Query: 329 RYNKSDKNLAEANIADFTNNQFYVFL-----TKGELQITGMWYLDSGCNTHMTEDKTLFT 165 N S+ + ++ +A +++ ++ +KGE ++ +W +DSG HMT + F Sbjct: 251 EKN-SEASTSQGCVASTSDDGEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFY 309 Query: 164 NLRPVNKVIFVKIVGQEKLPIVGVGDIQLNFGKTTI-QLKNTYLVEGLRRSLISL 3 + P+++ V + L I GVG I+L T+ +++ V+GL+++L+S+ Sbjct: 310 SYEPISEG-SVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSV 363 Score = 49.7 bits (117), Expect(2) = 2e-15 Identities = 40/177 (22%), Positives = 80/177 (45%), Gaps = 2/177 (1%) Frame = -2 Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWLRKDKLTKAFLKSSISTSILGLIQIEKYS 847 LW + L ++ L L + + W D A L +++ S+L I +K + Sbjct: 17 LWKLKIRAILRKDNCLDAIDGRLADITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTA 76 Query: 846 FNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGEPATP 667 IW L + S L+++LY L++ ++ S+ + + ++ + +L S Sbjct: 77 KEIWDTLIKLYEVKSLHNRIFLKRRLYTLQMGESTSVTDHINTLNTLFSQLTASDFKIAK 136 Query: 666 IDLFYSTLEALPDDWEHYKDNLL--LLKNNMTFDDLCEALLDKEETLKRKKNYRYRS 502 + L++LPD ++ N+ + + + FDD+ A+L++E R+KN RS Sbjct: 137 NERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEE---SRRKNKEERS 190 >gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] Length = 1305 Score = 60.8 bits (146), Expect(2) = 3e-15 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 6/175 (3%) Frame = -3 Query: 509 TEAYFTQHKQKRTYNGKNSKTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDG 330 T T+ + N SK+ KK N C+ CG H K C+ + KK+G Sbjct: 202 TRGRSTERGPSGSQNHGRSKSRRKK-NIKCYGCGMKGHVKKECW----------NIKKNG 250 Query: 329 RYNKSDKNLAEANIADFTNNQFYVFL-----TKGELQITGMWYLDSGCNTHMTEDKTLFT 165 N S+ + ++ +A +++ ++ +KGE ++ +W +DSG HMT + F Sbjct: 251 EKN-SEASTSQGCVASTSDDGEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFF 309 Query: 164 NLRPVNKVIFVKIVGQEKLPIVGVGDIQLNFGKTTI-QLKNTYLVEGLRRSLISL 3 + P+++ V + L I GVG I+L T+ +++ V+GL+++L+S+ Sbjct: 310 SYEPISEG-SVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSV 363 Score = 48.9 bits (115), Expect(2) = 3e-15 Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 4/179 (2%) Frame = -2 Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWLRKDKLTKAFLKSSISTSILGLIQIEKYS 847 LW + L ++ L + + W D A L +++ S+L I +K + Sbjct: 17 LWKLKIRAILRKDNCLDAIDGRPADITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTA 76 Query: 846 FNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGEPATP 667 IW L + S L+++LY L++ ++ S+ + + ++ + +L S Sbjct: 77 KEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAE 136 Query: 666 IDLFYSTLEALPDDWEHYKDNLLLLKNNMT----FDDLCEALLDKEETLKRKKNYRYRS 502 + L++LPD ++ N + NN+T FDD+ A+L++E R+KN RS Sbjct: 137 NERAELLLQSLPDSYDQLIIN--ITNNNITDTLHFDDVAGAILEEE---SRRKNKEERS 190 >gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1278 Score = 58.9 bits (141), Expect(2) = 3e-15 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 4/167 (2%) Frame = -2 Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWL----RKDKLTKAFLKSSISTSILGLIQI 859 LW M L L L+ K W RKD+ + ++ +S IL + Sbjct: 19 LWQVKMRAVLAQTSDLDEALESFGKKKTTEWTTGEKRKDRKALSLIQLHLSNDILQEVLQ 78 Query: 858 EKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGE 679 EK + +W KL +I + ++ KL++ KL ++GS+ + +I L Sbjct: 79 EKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHISVFKEIVADLVSMEV 138 Query: 678 PATPIDLFYSTLEALPDDWEHYKDNLLLLKNNMTFDDLCEALLDKEE 538 DL L +LP +E+++D +LL ++ +T ++ EAL ++E+ Sbjct: 139 QFDDEDLGLLLLCSLPSSYENFRDTILLSRDELTLAEVYEALQNREK 185 Score = 50.8 bits (120), Expect(2) = 3e-15 Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 8/168 (4%) Frame = -3 Query: 482 QKRTYNGKNSKTTNKKRNY-------YCHICGKNNHNTKNCFFNATGPNFKPSFKKDGRY 324 ++RTYN N + +K R +C C K H K C+ ++ Sbjct: 209 EQRTYNDSNDRDKSKSRGRSKSRGKKFCKYCKKKIHFIKECWK-----------LQNKEK 257 Query: 323 NKSDKNLAEANIADFTNNQFYVFLTKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPVNK 144 KSD + A +++ + + G + W LD+ C+ H+ ++ F++ + V Sbjct: 258 RKSDGKASVVTSAKNSDSGDCLVVFAGCVASHDEWILDTACSFHIYINRDWFSSYKSVQN 317 Query: 143 VIFVKIVGQEKLPIVGVGDIQL-NFGKTTIQLKNTYLVEGLRRSLISL 3 V++ IVG+G +Q+ T LK+ + G+ R+LISL Sbjct: 318 GDVVRMGNDNPREIVGIGSVQIKTHDGITRTLKDVRHIPGMARNLISL 365 >gb|AFB73912.1| polyprotein [Citrus sinensis] Length = 1309 Score = 57.8 bits (138), Expect(2) = 9e-15 Identities = 44/175 (25%), Positives = 84/175 (48%), Gaps = 6/175 (3%) Frame = -3 Query: 509 TEAYFTQHKQKRTYNGKNSKTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDG 330 T T+ + N SK+ +KK N C+ CGK H K C+ N +++G Sbjct: 202 TRGRSTERGPSGSQNHGRSKSRSKK-NVKCYNCGKKGHVKKECWSNQK--------RREG 252 Query: 329 RYNKSDKNLAEANIADFTNNQFYVF-----LTKGELQITGMWYLDSGCNTHMTEDKTLFT 165 + +S A+ +A +++ ++ +++G +++ +W +DSG HMT + F Sbjct: 253 KEPESSN--AQGCVASTSDDGEILYSEATIVSEGRKRLSDVWLIDSGATWHMTSRREWFH 310 Query: 164 NLRPVNKVIFVKIVGQEKLPIVGVGDIQLNFGKTTIQ-LKNTYLVEGLRRSLISL 3 P++ V + L I G+G I++ TI+ ++ V GL+++L+SL Sbjct: 311 TYEPISGG-SVYMGNDHALEIAGIGTIKIKMFDGTIRTIEEVRHVNGLKKNLLSL 364 Score = 50.4 bits (119), Expect(2) = 9e-15 Identities = 38/174 (21%), Positives = 76/174 (43%), Gaps = 4/174 (2%) Frame = -2 Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWLRKDKLTKAFLKSSISTSILGLIQIEKYS 847 LW M+ L N+ L + + D W D + L +++ +L + + + Sbjct: 17 LWKMKMKAVLRKNNCLAAIGERPMEITDDKWNEVDSNAISDLHLALADGVLSSVAEKNTA 76 Query: 846 FNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGEPATP 667 IW L + S L++KLY L++ ++ + + + ++ + +L G Sbjct: 77 KEIWDTLTKLYEAKSLHNKIFLKRKLYTLRMAESTMVTDHINTLKTLFSQLTTLGHNIEE 136 Query: 666 IDLFYSTLEALPDDWEHYKDNLLLLKNN----MTFDDLCEALLDKEETLKRKKN 517 + L++LPD ++ N L NN + FDD+ ++L++E K K+N Sbjct: 137 NERAELLLQSLPDSYDQLIIN--LTNNNPVDSLVFDDVAASVLNEESRRKNKEN 188 >gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] Length = 1305 Score = 60.8 bits (146), Expect(2) = 9e-15 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 6/175 (3%) Frame = -3 Query: 509 TEAYFTQHKQKRTYNGKNSKTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDG 330 T T+ + N SK+ KK N C+ CG H K C+ + KK+G Sbjct: 202 TRGRSTERGPSGSQNHGRSKSRRKK-NIKCYGCGMKGHVKKECW----------NIKKNG 250 Query: 329 RYNKSDKNLAEANIADFTNNQFYVFL-----TKGELQITGMWYLDSGCNTHMTEDKTLFT 165 N S+ + ++ +A +++ ++ +KGE ++ +W +DSG HMT + F Sbjct: 251 EKN-SEASTSQGCVASTSDDGEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFF 309 Query: 164 NLRPVNKVIFVKIVGQEKLPIVGVGDIQLNFGKTTI-QLKNTYLVEGLRRSLISL 3 + P+++ V + L I GVG I+L T+ +++ V+GL+++L+S+ Sbjct: 310 SYEPISEG-SVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSV 363 Score = 47.4 bits (111), Expect(2) = 9e-15 Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 2/177 (1%) Frame = -2 Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWLRKDKLTKAFLKSSISTSILGLIQIEKYS 847 LW + L ++ L + + W D A L +++ S+L I +K + Sbjct: 17 LWKLKIRAILRKDNCLDAIDGRPADITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTA 76 Query: 846 FNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGEPATP 667 IW L + S L+++LY L++ ++ S+ + + ++ + +L S Sbjct: 77 KEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAE 136 Query: 666 IDLFYSTLEALPDDWEHYKDNLL--LLKNNMTFDDLCEALLDKEETLKRKKNYRYRS 502 + L++LPD ++ N+ + + + FDD+ A+L++E R+KN RS Sbjct: 137 NERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEE---SRRKNKEERS 190 >gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] Length = 1305 Score = 60.5 bits (145), Expect(2) = 1e-14 Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 6/175 (3%) Frame = -3 Query: 509 TEAYFTQHKQKRTYNGKNSKTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDG 330 T T+ + N SK+ +K N C+ CG H K C+ N KK+G Sbjct: 202 TRGRSTERGPSGSQNHGRSKS-RRKNNIKCYGCGMKGHVKKECWNN----------KKNG 250 Query: 329 RYNKSDKNLAEANIADFTNNQFYVFL-----TKGELQITGMWYLDSGCNTHMTEDKTLFT 165 N S+ ++ +A +++ ++ ++GE Q+ +W +DSG HMT + F Sbjct: 251 EKN-SEATTSQGCVASTSDDGEILYSEAATSSEGERQLNDVWIMDSGATWHMTPHRDWFY 309 Query: 164 NLRPVNKVIFVKIVGQEKLPIVGVGDIQLNFGKTTI-QLKNTYLVEGLRRSLISL 3 + P+++ V + L I GVG I+L T+ +++ V+GL+++L+S+ Sbjct: 310 SYEPISEG-SVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSV 363 Score = 47.4 bits (111), Expect(2) = 1e-14 Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 2/177 (1%) Frame = -2 Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWLRKDKLTKAFLKSSISTSILGLIQIEKYS 847 LW + L ++ L + + W D A L +++ S+L I +K + Sbjct: 17 LWKLKIRAILRKDNCLDAIDGRPADITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTA 76 Query: 846 FNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGEPATP 667 IW L + S L+++LY L++ ++ S+ + + ++ + +L S Sbjct: 77 KEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAE 136 Query: 666 IDLFYSTLEALPDDWEHYKDNLL--LLKNNMTFDDLCEALLDKEETLKRKKNYRYRS 502 + L++LPD ++ N+ + + + FDD+ A+L++E R+KN RS Sbjct: 137 NERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEE---SRRKNKEERS 190 >gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group] gi|108708632|gb|ABF96427.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1326 Score = 55.1 bits (131), Expect(2) = 5e-14 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Frame = -2 Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWL----RKDKLTKAFLKSSISTSILGLIQI 859 LW M L L L+ K W RKD+ ++ +S IL + Sbjct: 19 LWQVKMRAILAQTSDLDEALESFGKKKSTEWTAEEKRKDRKALLLIQLHLSNDILQEVLQ 78 Query: 858 EKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGE 679 EK + +W KL +I + ++ KL++ KL ++GS+ + +I L Sbjct: 79 EKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHISVFKEIVVDLVSIEV 138 Query: 678 PATPIDLFYSTLEALPDDWEHYKDNLLLLKNNMTFDDLCEALLDKEE 538 DL L +LP + +++D +LL ++ +T ++ EAL ++E+ Sbjct: 139 QFDDEDLGLLLLCSLPSSYANFRDTILLSRDELTLAEVYEALQNREK 185 Score = 50.4 bits (119), Expect(2) = 5e-14 Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 8/168 (4%) Frame = -3 Query: 482 QKRTYNGKNSKTTNKKRNY-------YCHICGKNNHNTKNCFFNATGPNFKPSFKKDGRY 324 ++RTYN + + ++ R +C C K NH + C+ ++ Sbjct: 209 EQRTYNDSSDRDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWK-----------LQNKEK 257 Query: 323 NKSDKNLAEANIADFTNNQFYVFLTKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPVNK 144 KSD + A+ +++ + + G + W LD+ C+ H+ ++ F++ + V Sbjct: 258 RKSDGKASVVTSAENSDSGDCLVVFAGCVASHDEWILDTACSFHICINRDWFSSYKSVQN 317 Query: 143 VIFVKIVGQEKLPIVGVGDIQL-NFGKTTIQLKNTYLVEGLRRSLISL 3 V++ IVG+G +Q+ T LK+ + G+ R+LISL Sbjct: 318 GDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISL 365 >gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group] gi|53370655|gb|AAU89150.1| integrase core domain containing protein [Oryza sativa Japonica Group] gi|108710286|gb|ABF98081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1322 Score = 52.4 bits (124), Expect(2) = 9e-14 Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 4/175 (2%) Frame = -2 Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWL----RKDKLTKAFLKSSISTSILGLIQI 859 LW M L L L+ K W RKD+ + ++ +S IL + Sbjct: 19 LWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLIQLHLSNDILQEVLQ 78 Query: 858 EKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGE 679 +K + +W KL +I + ++ KL++ KL ++GS+ + +I L Sbjct: 79 KKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLHESGSVLNHISVFKEIVADLVSMEV 138 Query: 678 PATPIDLFYSTLEALPDDWEHYKDNLLLLKNNMTFDDLCEALLDKEETLKRKKNY 514 DL L +LP + +++ +LL ++ +T ++ EAL ++E+ ++Y Sbjct: 139 QFDDEDLGLLLLCSLPSSYANFRHTILLSRDELTLAEVYEALQNREKMKGMVQSY 193 Score = 52.4 bits (124), Expect(2) = 9e-14 Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 8/168 (4%) Frame = -3 Query: 482 QKRTYNGKNSKTTNKKRNY-------YCHICGKNNHNTKNCFFNATGPNFKPSFKKDGRY 324 ++RTYN N ++ R +C C K NH + C+ ++ Sbjct: 209 EQRTYNDSNDHDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWK-----------LQNKEK 257 Query: 323 NKSDKNLAEANIADFTNNQFYVFLTKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPVNK 144 KSD + A+ +++ + + G + W LD+ C+ H+ ++ F++ + V Sbjct: 258 RKSDGKASVVTSAENSDSGDCLVVFAGYVASHDEWILDTACSFHICINRDWFSSYKSVQN 317 Query: 143 VIFVKIVGQEKLPIVGVGDIQL-NFGKTTIQLKNTYLVEGLRRSLISL 3 V++ IVG+G +Q+ T LK+ + G+ R+LISL Sbjct: 318 EDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISL 365 >gb|AFB73911.1| polyprotein [Citrus sinensis] Length = 1309 Score = 54.3 bits (129), Expect(2) = 2e-13 Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 6/175 (3%) Frame = -3 Query: 509 TEAYFTQHKQKRTYNGKNSKTTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDG 330 T T+ + N SK KK N C+ CGK H K C+ N +++G Sbjct: 202 TRGRSTERGPSGSQNQGRSKFRGKK-NVKCYNCGKKGHVKKECWSNQK--------RREG 252 Query: 329 RYNKSDKNLAEANIADFTNNQFYVF-----LTKGELQITGMWYLDSGCNTHMTEDKTLFT 165 + + + + A+ +A +++ ++ +++G +++ +W +DSG HMT + F Sbjct: 253 K--EPETSNAQGCVASTSDDGEILYSEATTVSEGRKRLSDVWLIDSGATWHMTSRREWFH 310 Query: 164 NLRPVNKVIFVKIVGQEKLPIVGVGDIQLNFGKTTIQ-LKNTYLVEGLRRSLISL 3 P++ V + L I G+G I++ TI+ + V GL+++L+SL Sbjct: 311 TYEPISGG-SVYMGNDHALEIAGIGTIKIKMFDGTIRTIGEVRHVNGLKKNLLSL 364 Score = 49.7 bits (117), Expect(2) = 2e-13 Identities = 38/174 (21%), Positives = 76/174 (43%), Gaps = 4/174 (2%) Frame = -2 Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWLRKDKLTKAFLKSSISTSILGLIQIEKYS 847 LW M+ L N+ L + + D W D + L +++ +L + + + Sbjct: 17 LWKMKMKAVLRKNNCLAAIGERPMEITDDKWNEVDGNAISDLHLALADGVLSSVAEKNTA 76 Query: 846 FNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGEPATP 667 IW L + S L++KLY L++ ++ + + + ++ + +L G Sbjct: 77 KEIWDTLTKLYEAKSLHNKIFLKRKLYTLRMAESTMVTDHINTLKTLFSQLTTLGHNIEE 136 Query: 666 IDLFYSTLEALPDDWEHYKDNLLLLKNN----MTFDDLCEALLDKEETLKRKKN 517 + L++LPD ++ N L NN + FDD+ ++L++E K K+N Sbjct: 137 NERAELLLQSLPDSYDQLIIN--LTNNNPVESLVFDDVAASVLNEESRRKNKEN 188 >emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera] Length = 1316 Score = 52.4 bits (124), Expect(2) = 2e-12 Identities = 37/179 (20%), Positives = 77/179 (43%), Gaps = 11/179 (6%) Frame = -2 Query: 1023 WSQTMETFLDANDMLKFFLQELPILK-----------IDAWLRKDKLTKAFLKSSISTSI 877 W Q M +L ++ +F ++ P LK IDAW D L + ++ + ++ S+ Sbjct: 52 WQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSL 111 Query: 876 LGLIQIEKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDK 697 + +K + +W L A A + + + K+ + ++ VQ + I + Sbjct: 112 YNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHE 171 Query: 696 LDKSGEPATPIDLFYSTLEALPDDWEHYKDNLLLLKNNMTFDDLCEALLDKEETLKRKK 520 + G + + +E LP W+ +K+ L + M+ +DL L +E+ + +K Sbjct: 172 IHAEGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEK 230 Score = 48.1 bits (113), Expect(2) = 2e-12 Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 20/189 (10%) Frame = -3 Query: 512 DTEAYFTQHKQK---RTYN--GKNSKT-----TNKKRNYY--CHICGKNNHNTKNCFFNA 369 + +A F +H Q +T N GK SK +KK + C CGK H + +C Sbjct: 238 EAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDC---- 293 Query: 368 TGPNFKPSFKKDGRYNKSDKNLAEANIADFTNNQFYVFLTK--GELQITGM----WYLDS 207 R K +K I D T N + + LT E+ + G W++D+ Sbjct: 294 -------------RLPKKNKPKEANVIDDITKNVYDIDLTAVVSEVNLVGSNPKEWWIDT 340 Query: 206 GCNTHMTEDKTLFTNLRPVNKVIFVKIVGQEKLPIVGVGDI--QLNFGKTTIQLKNTYLV 33 G H+ DK +F+ P+ V + I G G + ++ GK + L N V Sbjct: 341 GATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKMTSGK-ELTLTNVLYV 399 Query: 32 EGLRRSLIS 6 +R++L+S Sbjct: 400 PEIRKNLVS 408 >ref|XP_003635668.1| PREDICTED: uncharacterized protein LOC100854178, partial [Vitis vinifera] Length = 478 Score = 52.4 bits (124), Expect(2) = 2e-12 Identities = 37/179 (20%), Positives = 77/179 (43%), Gaps = 11/179 (6%) Frame = -2 Query: 1023 WSQTMETFLDANDMLKFFLQELPILK-----------IDAWLRKDKLTKAFLKSSISTSI 877 W Q M +L ++ +F ++ P LK IDAW D L + ++ + ++ S+ Sbjct: 52 WQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSL 111 Query: 876 LGLIQIEKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDK 697 + +K + +W L A A + + + K+ + ++ VQ + I + Sbjct: 112 YNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHE 171 Query: 696 LDKSGEPATPIDLFYSTLEALPDDWEHYKDNLLLLKNNMTFDDLCEALLDKEETLKRKK 520 + G + + +E LP W+ +K+ L + M+ +DL L +E+ + +K Sbjct: 172 IHAEGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEK 230 Score = 48.1 bits (113), Expect(2) = 2e-12 Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 20/189 (10%) Frame = -3 Query: 512 DTEAYFTQHKQK---RTYN--GKNSKT-----TNKKRNYY--CHICGKNNHNTKNCFFNA 369 + +A F +H Q +T N GK SK +KK + C CGK H + +C Sbjct: 238 EAKANFVEHGQSSNAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDC---- 293 Query: 368 TGPNFKPSFKKDGRYNKSDKNLAEANIADFTNNQFYVFLTK--GELQITGM----WYLDS 207 R K +K I D T N + + LT E+ + G W++D+ Sbjct: 294 -------------RLPKKNKPKEANVIDDITKNVYDIDLTTVVSEVNLVGSNPKEWWIDT 340 Query: 206 GCNTHMTEDKTLFTNLRPVNKVIFVKIVGQEKLPIVGVGDI--QLNFGKTTIQLKNTYLV 33 G H+ DK +F+ P+ V + I G G + ++ GK + L N V Sbjct: 341 GATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKMTSGK-ELTLTNVLYV 399 Query: 32 EGLRRSLIS 6 +R++L+S Sbjct: 400 PEIRKNLVS 408 >gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] Length = 1305 Score = 60.1 bits (144), Expect(2) = 2e-12 Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 6/155 (3%) Frame = -3 Query: 449 TTNKKRNYYCHICGKNNHNTKNCFFNATGPNFKPSFKKDGRYNKSDKNLAEANIADFTNN 270 T+ +K N C+ CGK H K+C+ N KK G S+ + ++ +A +++ Sbjct: 221 TSRRKTNLKCYNCGKRGHLKKDCWSN----------KKSGE-KSSEASTSQGCVASTSDD 269 Query: 269 QFYVFL-----TKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPVNKVIFVKIVGQEKLP 105 ++ TKG+ ++T +W +DSG HMT + F PV++ V + L Sbjct: 270 GEVLYSEAAVSTKGKNRLTDVWIVDSGATWHMTPRRDWFCTYEPVSEG-NVFMGNDHALE 328 Query: 104 IVGVGDIQLNFGKTTIQ-LKNTYLVEGLRRSLISL 3 IVG+G +++ TI+ L+ V+ L ++L+S+ Sbjct: 329 IVGIGTVKIKMYDGTIRTLQEVRHVKELAKNLLSV 363 Score = 40.0 bits (92), Expect(2) = 2e-12 Identities = 34/172 (19%), Positives = 77/172 (44%), Gaps = 2/172 (1%) Frame = -2 Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWLRKDKLTKAFLKSSISTSILGLIQIEKYS 847 LW ++ L ++ L + D D A L +++ S+L I +K + Sbjct: 17 LWKLKIKAILRKDNCLPAIDGRPADITDDKRKEMDDNAVANLHLAVADSVLSSIAEKKTA 76 Query: 846 FNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGEPATP 667 IW L + S L+++LY ++ ++ S+ + + ++ + +L S Sbjct: 77 KKIWDTLIQLYEVKSLHNRIFLKRRLYTFRMSESTSMPDHINNLNTMFAQLSASDFTIGE 136 Query: 666 IDLFYSTLEALPDDWEHYKDNLL--LLKNNMTFDDLCEALLDKEETLKRKKN 517 + L++LPD ++ N+ + + ++F+D+ A+L++E K K++ Sbjct: 137 NERAEVLLQSLPDSYDQLVINITNNNIVDRLSFNDVAGAILEEESRRKNKED 188 >emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] Length = 1334 Score = 50.1 bits (118), Expect(2) = 3e-12 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Frame = -2 Query: 894 SISTSILGLIQIEKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSV 715 S+ SIL I EK + IW K+ T+ S A L+K+LY + + +I + + + Sbjct: 68 SLGDSILREISEEKTALGIWNKVETLCMKKSLAHRLFLKKRLYTFSMREGVTIQDHIDTF 127 Query: 714 TKIRDKLDKSGEPATPI---DLFYSTLEALPDDWEHYKDNLLLLKNNMTFDDLCEALLDK 544 KI LD G I D + L +LP +E + D +L + +T +D+ +L K Sbjct: 128 NKI--ILDLEGVENVKICDEDKAFFLLSSLPKSYEGFVDTMLYGRTTLTLEDVKASLSSK 185 Query: 543 E 541 E Sbjct: 186 E 186 Score = 49.7 bits (117), Expect(2) = 3e-12 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 1/116 (0%) Frame = -3 Query: 491 QHKQKRTYNGKNSKTTNKKRNYY-CHICGKNNHNTKNCFFNATGPNFKPSFKKDGRYNKS 315 ++K + +GKN +T +KK+ C C K H ++CF KK+ + Sbjct: 212 KNKNQGKGHGKNQETADKKKKKRKCFYCRKEGHYIRDCFEKK---------KKESQEKSG 262 Query: 314 DKNLAEANIADFTNNQFYVFLTKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPVN 147 D +A + +D Q L G W +DSGC+ H+ +KTLF V+ Sbjct: 263 DAAVASDDGSD--GYQSADLLVASNSNTKGQWVIDSGCSFHLCPEKTLFYKYEAVD 316 >gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica Group] gi|22655747|gb|AAN04164.1| Putative retrotransposon protein [Oryza sativa Japonica Group] gi|31431214|gb|AAP53029.1| retrotransposon protein, putative, Ty1-copia subclass, expressed [Oryza sativa Japonica Group] Length = 1229 Score = 55.1 bits (131), Expect(2) = 3e-12 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 4/167 (2%) Frame = -2 Query: 1026 LWSQTMETFLDANDMLKFFLQELPILKIDAWL----RKDKLTKAFLKSSISTSILGLIQI 859 LW M L L L+ K W RKD+ + ++ +S IL + Sbjct: 16 LWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLIQLHLSNDILQKVLQ 75 Query: 858 EKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLKLPKNGSIAELVQSVTKIRDKLDKSGE 679 EK + +W KL +I + ++ KL++ KL ++GS+ + +I L Sbjct: 76 EKTAAELWFKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHISVFKEIIADLVSMEV 135 Query: 678 PATPIDLFYSTLEALPDDWEHYKDNLLLLKNNMTFDDLCEALLDKEE 538 DL L +LP + +++D +LL ++ +T ++ EAL ++E+ Sbjct: 136 QFDDEDLGLLLLCSLPSLYANFRDTILLSRDELTLAEVYEALQNREK 182 Score = 44.7 bits (104), Expect(2) = 3e-12 Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 8/168 (4%) Frame = -3 Query: 482 QKRTYNGKNSKTTNKKRNY-------YCHICGKNNHNTKNCFFNATGPNFKPSFKKDGRY 324 ++RTYN N + ++ R +C C K NH + C+ ++ Sbjct: 206 EQRTYNDSNDRDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWK-----------LQNKEK 254 Query: 323 NKSDKNLAEANIADFTNNQFYVFLTKGELQITGMWYLDSGCNTHMTEDKTLFTNLRPVNK 144 KSD + A+ +++ + G + W LD+ C + ++ F++ + V Sbjct: 255 RKSDGKASVVTSAENSDSADCLVFFAGCVASHDEWILDTACLFLICINRDWFSSHKSVQN 314 Query: 143 VIFVKIVGQEKLPIVGVGDIQL-NFGKTTIQLKNTYLVEGLRRSLISL 3 V++ I+G+G +Q+ T LK+ + G+ R+LISL Sbjct: 315 GDVVRMGDNNPREIMGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISL 362 >emb|CCO30981.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 Includes: RecName: Full=Protease [Rhizoctonia solani AG-1 IB] Length = 621 Score = 62.8 bits (151), Expect(2) = 3e-12 Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 20/187 (10%) Frame = -3 Query: 503 AYFTQHKQKRTYNGKNSKTTNKKRNYY-----CHICGKNNHNTKNCFFNA-----TGPNF 354 A F+QH K + N K++NKK+N C CGK H+ C+ TGP+ Sbjct: 220 AMFSQHLSKSKQS--NGKSSNKKKNKKDKGPACLNCGKGGHSKAECWAKGGGAEGTGPHQ 277 Query: 353 KPSFKKDGRYNKSDKNLAE-----ANIADFTNNQFYVFLTKGELQITGMWYLDSGCNTHM 189 + +K + +S A ++ Q Y T W LDSG + HM Sbjct: 278 RKKAEKQAKDKESSSTTKSESAKVAVTSEPIQTQLYALPAIDSYSPTDSWLLDSGASRHM 337 Query: 188 TEDKTLFTNLRPVNKVIFVKIVGQEKLPIVGVGDIQLNF----GK-TTIQLKNTYLVEGL 24 T ++ F P+ + V+I +++P G+G I + GK T +K V L Sbjct: 338 TPNRQWFATYCPLASPVSVRIGNGKQIPAAGIGRIFVTLRNRQGKDTEAVIKEVLHVPDL 397 Query: 23 RRSLISL 3 + +LIS+ Sbjct: 398 QANLISV 404 Score = 37.0 bits (84), Expect(2) = 3e-12 Identities = 19/105 (18%), Positives = 49/105 (46%) Frame = -2 Query: 936 WLRKDKLTKAFLKSSISTSILGLIQIEKYSFNIWRKLFTILFGSSAAAIAGLRKKLYNLK 757 W ++D+ A + ++ + + + + + W+K+ G +++ L ++L K Sbjct: 75 WKKRDREAYAQITLNMEDEAMADVMRTRTARDAWKKVIERWEGKGVQSLSFLYQQLTTAK 134 Query: 756 LPKNGSIAELVQSVTKIRDKLDKSGEPATPIDLFYSTLEALPDDW 622 + ++ IA ++ + K++ GEP + + L + ALP + Sbjct: 135 IEEDEDIATAFNNIRSLAKKMETLGEPISDLMLAQMMMTALPPSY 179