BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00019226
         (1743 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006827132.1| hypothetical protein AMTR_s00010p00249150 [A...   528   e-147
tpg|DAA35758.1| TPA: putative DNA-directed RNA polymerase subuni...   526   e-146
gb|ADB19860.1| mutant required to maintain repression 7-3/RNA po...   526   e-146
ref|NP_001177299.1| required to maintain repression7 [Zea mays] ...   526   e-146
ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [S...   523   e-146
gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA p...   523   e-145
gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]    520   e-145
ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [S...   520   e-144
gb|AFW59623.1| putative DNA-directed RNA polymerase subunit fami...   516   e-143
gb|EEE61785.1| hypothetical protein OsJ_16357 [Oryza sativa Japo...   509   e-141
gb|EEC78111.1| hypothetical protein OsI_17620 [Oryza sativa Indi...   509   e-141
ref|NP_001054041.1| Os04g0641000 [Oryza sativa Japonica Group] g...   509   e-141
emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]         509   e-141
ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D sub...   508   e-141
ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerase D sub...   506   e-141
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...   505   e-140
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub...   503   e-140
ref|XP_006652896.1| PREDICTED: DNA-directed RNA polymerases IV a...   500   e-139
gb|EMS61833.1| DNA-directed RNA polymerase D subunit 2a [Triticu...   500   e-139
ref|XP_003580654.1| PREDICTED: DNA-directed RNA polymerase D sub...   497   e-138

>ref|XP_006827132.1| hypothetical protein AMTR_s00010p00249150 [Amborella trichopoda]
            gi|548831561|gb|ERM94369.1| hypothetical protein
            AMTR_s00010p00249150 [Amborella trichopoda]
          Length = 1221

 Score =  528 bits (1360), Expect = e-147
 Identities = 263/576 (45%), Positives = 380/576 (65%), Gaps = 2/576 (0%)
 Frame = -3

Query: 1723 FSKEASKAFFDEWGLLSHQLNSFNDFISHGLQRLFDSLGDIEIEPDYNPKNKGSDGNWRR 1544
            F  +AS +FF EWGL+SHQLNS+NDF+++G+     SLG+  ++P+YNP  KGS   W+ 
Sbjct: 59   FCTDASSSFFKEWGLISHQLNSYNDFVAYGIHEAIRSLGEFHVDPEYNPSFKGS--GWKY 116

Query: 1543 GIITLGEVTVEKPSYADKDGNRVDLKPSEARLRNMTYSSPVYVDAKIKTYLNDSPKVDSK 1364
              +    V+V++P+Y D+ G   +LKP +ARL+++TYSS V  D   K YL +  K D  
Sbjct: 117  ASVKFENVSVDRPTYMDQHGEICELKPKQARLQHITYSSRVTADVTTKVYLREIKKTDKY 176

Query: 1363 SKASTSFLSKGGKYSSNILDQSKR--ILIGRIPVMVKSKLCHLYGLGPEQLLKERDCYFD 1190
                  ++        N++ ++K   +L+GRIPVMVKS LC+L+GL PE L+++ +C  D
Sbjct: 177  KTGREQYVDV------NVISETKEKDVLVGRIPVMVKSNLCYLHGLKPEVLIRQGECPLD 230

Query: 1189 LGGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLNEDIK 1010
             GGYF++KG EK+FIAQE  C  R+WV   P W  +Y   N     K  +V V++ E  K
Sbjct: 231  FGGYFLVKGAEKIFIAQENMCLRRLWVSKTPSWSVLYRHGNS----KQKRVDVRIVESQK 286

Query: 1009 AKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICE 830
                         S    I + F + +VP+ ++F+ALG  SD E+VQMI     D  +  
Sbjct: 287  GDT---------LSGGKVINIYFQYASVPIWIMFFALGALSDKEIVQMIDLDPSDTNLAY 337

Query: 829  FILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKA 650
             +LS+IY A+ + + FR  ++ ++Y+D ++++AK+P   SVEE +D+ LFP ++ +++KA
Sbjct: 338  ILLSTIYDADEKCEGFRQGKNSIEYLDREIQSAKFPPKESVEECIDSLLFPSLRERKQKA 397

Query: 649  MLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKD 470
            + LGYMV CLL SY GRR+V+NKDD+RNKRL LA EL+ ++M   ++   ++++KAIQ+D
Sbjct: 398  LYLGYMVKCLLLSYFGRRKVDNKDDFRNKRLGLAAELIEKEMLAHIKNAGRRMVKAIQRD 457

Query: 469  LSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSE 290
            LS  + LK +ECY D S++TNGLARAFSTG W HP   + + +GVVA++K+ NPLQ ++ 
Sbjct: 458  LSADRILKPIECYFDGSIVTNGLARAFSTGNWCHPFKVSERISGVVATLKRTNPLQTMAH 517

Query: 289  MRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSVNSSEKPL 110
            MR+ RL VQY   +G+ARYPNPSYWG+VCF+STPDGENCGLVKNLA T +VS N  E PL
Sbjct: 518  MRQTRLQVQYTGNIGNARYPNPSYWGKVCFLSTPDGENCGLVKNLAATGLVSTNLRE-PL 576

Query: 109  IEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGIC 2
            ++ L + G+ KLD VS        KVF+NGE +G+C
Sbjct: 577  LDKLTRCGMDKLDRVSPPSLSGKDKVFLNGEWVGLC 612


>tpg|DAA35758.1| TPA: putative DNA-directed RNA polymerase subunit family protein [Zea
            mays]
          Length = 1063

 Score =  526 bits (1354), Expect = e-146
 Identities = 266/580 (45%), Positives = 384/580 (66%), Gaps = 1/580 (0%)
 Frame = -3

Query: 1738 KEMHAFSKEASKAFFDEWGLLSHQLNSFNDFISHGLQRLFDSLGDIEIEPDYNPKNKGSD 1559
            + +  F KEAS++FFDE GL+SHQ+NS+N+F+SHGLQ LFDSLG++ +EP Y+P  KGS 
Sbjct: 85   ESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPSKKGS- 143

Query: 1558 GNWRRGIITLGEVTVEKPSY-ADKDGNRVDLKPSEARLRNMTYSSPVYVDAKIKTYLNDS 1382
            G W+  II  G V +EKP +   KD   VD KP  ARL+NMTY+S + V+  I+ Y  + 
Sbjct: 144  GGWKHAIIKFGRVKLEKPVFWTGKDEGSVDFKPWHARLQNMTYASRLIVEVTIQVYSLE- 202

Query: 1381 PKVDSKSKASTSFLSKGGKYSSNILDQSKRILIGRIPVMVKSKLCHLYGLGPEQLLKERD 1202
             K D     +  F+ K      N ++++  I IG +PVMVKS LC L+ L       E +
Sbjct: 203  -KSDKSKTGNDGFVQK-----RNFMNETHWIFIGLLPVMVKSNLCLLHSLN------ESE 250

Query: 1201 CYFDLGGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLN 1022
            C FD GGYF++KG EKVFIAQE+RC  R+W+ ++P W   +     R      ++ +KL 
Sbjct: 251  CLFDAGGYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSEIKRR-----RIYIKLV 305

Query: 1021 EDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDR 842
            E  +++           SE   I +SF + T+PV LLF+ALGISSD E+  MI     D 
Sbjct: 306  ESTRSED---------FSESKIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDA 356

Query: 841  EICEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQ 662
             +   I ++I +++   +DFR  +   +Y+D+ +K++++P   S ++ +   LFP I G 
Sbjct: 357  SVINTISATIKESDKLCEDFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGN 416

Query: 661  REKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKA 482
            R KA+ LGYMV CLL ++ G+R+ +NKDD+RNKRL+L GELLGR+++  LR   K+++KA
Sbjct: 417  RNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKA 476

Query: 481  IQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQ 302
            IQ+DL+  ++L+ +E YID+S++TNGL RAFSTG+W HP   A +C+G+VA++++ NPLQ
Sbjct: 477  IQRDLNSDRELQDLERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQ 536

Query: 301  VLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSVNSS 122
            ++S++R+ R  V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT++VS +  
Sbjct: 537  MMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVS-SRV 595

Query: 121  EKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGIC 2
             +PLIE     G+ KL+D+       M K+F+NG  +G C
Sbjct: 596  MQPLIESFISCGMSKLNDIPTEHIQRMDKIFLNGNWVGSC 635


>gb|ADB19860.1| mutant required to maintain repression 7-3/RNA polymerase D second
            largest subunit 2-3 [Zea mays]
          Length = 1094

 Score =  526 bits (1354), Expect = e-146
 Identities = 266/580 (45%), Positives = 384/580 (66%), Gaps = 1/580 (0%)
 Frame = -3

Query: 1738 KEMHAFSKEASKAFFDEWGLLSHQLNSFNDFISHGLQRLFDSLGDIEIEPDYNPKNKGSD 1559
            + +  F KEAS++FFDE GL+SHQ+NS+N+F+SHGLQ LFDSLG++ +EP Y+P  KGS 
Sbjct: 85   ESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPSKKGS- 143

Query: 1558 GNWRRGIITLGEVTVEKPSY-ADKDGNRVDLKPSEARLRNMTYSSPVYVDAKIKTYLNDS 1382
            G W+  II  G V +EKP +   KD   VD KP  ARL+NMTY+S + V+  I+ Y  + 
Sbjct: 144  GGWKHAIIKFGRVKLEKPVFWTGKDEGSVDFKPWHARLQNMTYASRLIVEVTIQVYSLE- 202

Query: 1381 PKVDSKSKASTSFLSKGGKYSSNILDQSKRILIGRIPVMVKSKLCHLYGLGPEQLLKERD 1202
             K D     +  F+ K      N ++++  I IG +PVMVKS LC L+ L       E +
Sbjct: 203  -KSDKSKTGNDGFVQK-----RNFMNETHWIFIGLLPVMVKSNLCLLHSLN------ESE 250

Query: 1201 CYFDLGGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLN 1022
            C FD GGYF++KG EKVFIAQE+RC  R+W+ ++P W   +     R      ++ +KL 
Sbjct: 251  CLFDAGGYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSEIKRR-----RIYIKLV 305

Query: 1021 EDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDR 842
            E  +++           SE   I +SF + T+PV LLF+ALGISSD E+  MI     D 
Sbjct: 306  ESTRSED---------FSESKIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDA 356

Query: 841  EICEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQ 662
             +   I ++I +++   +DFR  +   +Y+D+ +K++++P   S ++ +   LFP I G 
Sbjct: 357  SVINTISATIKESDKLCEDFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGN 416

Query: 661  REKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKA 482
            R KA+ LGYMV CLL ++ G+R+ +NKDD+RNKRL+L GELLGR+++  LR   K+++KA
Sbjct: 417  RNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKA 476

Query: 481  IQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQ 302
            IQ+DL+  ++L+ +E YID+S++TNGL RAFSTG+W HP   A +C+G+VA++++ NPLQ
Sbjct: 477  IQRDLNSDRELQDLERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQ 536

Query: 301  VLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSVNSS 122
            ++S++R+ R  V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT++VS +  
Sbjct: 537  MMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVS-SRV 595

Query: 121  EKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGIC 2
             +PLIE     G+ KL+D+       M K+F+NG  +G C
Sbjct: 596  MQPLIESFISCGMSKLNDIPTEHIQRMDKIFLNGNWVGSC 635


>ref|NP_001177299.1| required to maintain repression7 [Zea mays]
            gi|283443696|gb|ADB19857.1| required to maintain
            repression 7/RNA polymerase D second largest subunit [Zea
            mays] gi|297185477|gb|ADI24118.1| RPD2/E2a [Zea mays]
            gi|414585188|tpg|DAA35759.1| TPA: putative DNA-directed
            RNA polymerase subunit family protein [Zea mays]
          Length = 1229

 Score =  526 bits (1354), Expect = e-146
 Identities = 266/580 (45%), Positives = 384/580 (66%), Gaps = 1/580 (0%)
 Frame = -3

Query: 1738 KEMHAFSKEASKAFFDEWGLLSHQLNSFNDFISHGLQRLFDSLGDIEIEPDYNPKNKGSD 1559
            + +  F KEAS++FFDE GL+SHQ+NS+N+F+SHGLQ LFDSLG++ +EP Y+P  KGS 
Sbjct: 85   ESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPSKKGS- 143

Query: 1558 GNWRRGIITLGEVTVEKPSY-ADKDGNRVDLKPSEARLRNMTYSSPVYVDAKIKTYLNDS 1382
            G W+  II  G V +EKP +   KD   VD KP  ARL+NMTY+S + V+  I+ Y  + 
Sbjct: 144  GGWKHAIIKFGRVKLEKPVFWTGKDEGSVDFKPWHARLQNMTYASRLIVEVTIQVYSLE- 202

Query: 1381 PKVDSKSKASTSFLSKGGKYSSNILDQSKRILIGRIPVMVKSKLCHLYGLGPEQLLKERD 1202
             K D     +  F+ K      N ++++  I IG +PVMVKS LC L+ L       E +
Sbjct: 203  -KSDKSKTGNDGFVQK-----RNFMNETHWIFIGLLPVMVKSNLCLLHSLN------ESE 250

Query: 1201 CYFDLGGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLN 1022
            C FD GGYF++KG EKVFIAQE+RC  R+W+ ++P W   +     R      ++ +KL 
Sbjct: 251  CLFDAGGYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSEIKRR-----RIYIKLV 305

Query: 1021 EDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDR 842
            E  +++           SE   I +SF + T+PV LLF+ALGISSD E+  MI     D 
Sbjct: 306  ESTRSED---------FSESKIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDA 356

Query: 841  EICEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQ 662
             +   I ++I +++   +DFR  +   +Y+D+ +K++++P   S ++ +   LFP I G 
Sbjct: 357  SVINTISATIKESDKLCEDFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGN 416

Query: 661  REKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKA 482
            R KA+ LGYMV CLL ++ G+R+ +NKDD+RNKRL+L GELLGR+++  LR   K+++KA
Sbjct: 417  RNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKA 476

Query: 481  IQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQ 302
            IQ+DL+  ++L+ +E YID+S++TNGL RAFSTG+W HP   A +C+G+VA++++ NPLQ
Sbjct: 477  IQRDLNSDRELQDLERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQ 536

Query: 301  VLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSVNSS 122
            ++S++R+ R  V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT++VS +  
Sbjct: 537  MMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVS-SRV 595

Query: 121  EKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGIC 2
             +PLIE     G+ KL+D+       M K+F+NG  +G C
Sbjct: 596  MQPLIESFISCGMSKLNDIPTEHIQRMDKIFLNGNWVGSC 635


>ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
            gi|241938382|gb|EES11527.1| hypothetical protein
            SORBIDRAFT_06g030300 [Sorghum bicolor]
          Length = 1239

 Score =  523 bits (1348), Expect = e-146
 Identities = 267/580 (46%), Positives = 382/580 (65%), Gaps = 1/580 (0%)
 Frame = -3

Query: 1738 KEMHAFSKEASKAFFDEWGLLSHQLNSFNDFISHGLQRLFDSLGDIEIEPDYNPKNKGSD 1559
            + +  F KEAS++FFDE GL+SHQ+NS+N+F+SHGLQ LFDSLG++ +EP Y+P  KGS 
Sbjct: 95   ESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPSKKGS- 153

Query: 1558 GNWRRGIITLGEVTVEKPSY-ADKDGNRVDLKPSEARLRNMTYSSPVYVDAKIKTYLNDS 1382
            G W+  II  G V +EKP +   KD   VD KP  ARL+NMTY+S + V+  I+ Y  + 
Sbjct: 154  GGWKHAIIKFGRVKLEKPVFWTGKDEGSVDFKPWHARLQNMTYASRLKVEVTIQVYSLE- 212

Query: 1381 PKVDSKSKASTSFLSKGGKYSSNILDQSKRILIGRIPVMVKSKLCHLYGLGPEQLLKERD 1202
             K D     +  F+ K      N ++++  I IG +PVMVKS LC L+ L      KE +
Sbjct: 213  -KSDKSKTGNEGFVQK-----RNFMNETHWIFIGLLPVMVKSNLCLLHSL------KESE 260

Query: 1201 CYFDLGGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLN 1022
            C FD GGYF++KG EKVFIAQE+RC  R+WV ++P WM  +     R      ++ +KL 
Sbjct: 261  CLFDAGGYFLVKGMEKVFIAQEQRCLKRLWVSDRPFWMISFMHEIKRR-----RIYIKLV 315

Query: 1021 EDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDR 842
            E  +++           S    I +SF + T+PV LLF+ALGISSD E   +I     D 
Sbjct: 316  ESTRSED---------FSGSKVISISFLYATMPVWLLFFALGISSDKEAFDVIDMQDCDA 366

Query: 841  EICEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQ 662
             +   I ++I +++   K FR  +   +Y+D+ +K++++P   S ++ +   LFP I G 
Sbjct: 367  SVINTISATIKESDELCKGFRKSDKARQYVDELVKSSRFPPAESFDDYVARFLFPDINGN 426

Query: 661  REKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKA 482
            R KA  LGYMV CLL ++ G+R+ +NKDD+RNKRL+L GELLGR+++  LR L ++++KA
Sbjct: 427  RNKAFFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLLERRMVKA 486

Query: 481  IQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQ 302
            IQ+DL+  ++L+ +E YID+S++TNGL RAFSTG+W HP   A +C+G+VA++++ NPLQ
Sbjct: 487  IQRDLNNDRELQDLERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQ 546

Query: 301  VLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSVNSS 122
            ++S++R+ R  V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT++VS    
Sbjct: 547  MMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLAVTAIVSSRVG 606

Query: 121  EKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGIC 2
            + PLIE     G+ KL+D+       M K+F+NG  +G C
Sbjct: 607  Q-PLIESFISCGMSKLNDIPTEHIQRMDKIFLNGNWVGSC 645


>gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA polymerase D second
            largest subunit 2-2 [Zea mays]
          Length = 1229

 Score =  523 bits (1346), Expect = e-145
 Identities = 265/580 (45%), Positives = 383/580 (66%), Gaps = 1/580 (0%)
 Frame = -3

Query: 1738 KEMHAFSKEASKAFFDEWGLLSHQLNSFNDFISHGLQRLFDSLGDIEIEPDYNPKNKGSD 1559
            + +  F KEAS++FFDE GL+SHQ+NS+N+F+SHGLQ LFDSLG++ +EP Y+P  KGS 
Sbjct: 85   ESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPSKKGS- 143

Query: 1558 GNWRRGIITLGEVTVEKPSY-ADKDGNRVDLKPSEARLRNMTYSSPVYVDAKIKTYLNDS 1382
            G W+  II  G V +EKP +   KD   VD KP  ARL+NMTY+S + V+  I+ Y  + 
Sbjct: 144  GGWKHAIIKFGRVKLEKPVFWTGKDEGSVDFKPWHARLQNMTYASRLIVEVTIQVYSLE- 202

Query: 1381 PKVDSKSKASTSFLSKGGKYSSNILDQSKRILIGRIPVMVKSKLCHLYGLGPEQLLKERD 1202
             K D     +  F+ K      N ++++  I IG +PVMVKS LC L+ L       E +
Sbjct: 203  -KSDKSKTGNDGFVQK-----RNFMNETHWIFIGLLPVMVKSNLCLLHSLN------ESE 250

Query: 1201 CYFDLGGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLN 1022
            C FD GGYF++KG EKVFIAQE+RC  R+W+ ++P W   +     R      ++ +KL 
Sbjct: 251  CLFDAGGYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSEIKRR-----RIYIKLV 305

Query: 1021 EDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDR 842
            E  +++           SE   I +SF + T+PV LLF+ALGISSD E+  MI     D 
Sbjct: 306  ESTRSED---------FSESKIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDA 356

Query: 841  EICEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQ 662
             +   I ++I +++   +DFR  +   +Y+D+ +K++++P   S ++ +   LFP I G 
Sbjct: 357  SVINTISATIKESDKLCEDFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGN 416

Query: 661  REKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKA 482
            R KA+ LGYMV CLL ++ G+R+ +NKDD+RNKRL+L GELLGR+++  LR   K+++KA
Sbjct: 417  RNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKA 476

Query: 481  IQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQ 302
            IQ+DL+  ++L+ +E YID+S++TNGL RAFSTG+W HP   A +C+G+VA++++ NPLQ
Sbjct: 477  IQRDLNSDRELQDLERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQ 536

Query: 301  VLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSVNSS 122
            ++S++R+ R  V YA K GDARYPNPSYW ++CF+STPDGENCGLVKNLAVT++VS +  
Sbjct: 537  MMSDLRKTRQRVAYAGKAGDARYPNPSYWEKLCFMSTPDGENCGLVKNLAVTAIVS-SRV 595

Query: 121  EKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGIC 2
             +PLIE     G+ KL+D+       M K+F+NG  +G C
Sbjct: 596  MQPLIESFISCGMSKLNDIPTEHIQRMDKIFLNGNWVGSC 635


>gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]
          Length = 1170

 Score =  520 bits (1340), Expect = e-145
 Identities = 264/575 (45%), Positives = 380/575 (66%), Gaps = 1/575 (0%)
 Frame = -3

Query: 1723 FSKEASKAFFDEWGLLSHQLNSFNDFISHGLQRLFDSLGDIEIEPDYNPKNKGSDGNWRR 1544
            F KEAS++FFDE GL+SHQ+NS+N+F+SHGLQ LFDSLG++ +EP Y+P  KGS G W+ 
Sbjct: 31   FCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPSKKGS-GGWKH 89

Query: 1543 GIITLGEVTVEKPSY-ADKDGNRVDLKPSEARLRNMTYSSPVYVDAKIKTYLNDSPKVDS 1367
             II  G V +EKP +   KD   VD KP  ARL+NMTY+S + V+  I+ Y  +  K D 
Sbjct: 90   AIIKFGRVKLEKPVFWTGKDEGSVDFKPWHARLQNMTYASRLIVEVTIQVYSLE--KSDK 147

Query: 1366 KSKASTSFLSKGGKYSSNILDQSKRILIGRIPVMVKSKLCHLYGLGPEQLLKERDCYFDL 1187
                +  F+ K      N ++++  I IG +PVMVKS LC L+ L       E +C FD 
Sbjct: 148  SKTGNDGFVQK-----RNFMNETHWIFIGLLPVMVKSNLCLLHSLN------ESECLFDA 196

Query: 1186 GGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLNEDIKA 1007
            GGYF++KG EKVFIAQE+RC  R+W+ ++P W   +     R      ++ +KL E  ++
Sbjct: 197  GGYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSEIKRR-----RIYIKLVESTRS 251

Query: 1006 KKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEF 827
            +           SE   I +SF + T+PV L  +ALGISSD E+  MI     D  +   
Sbjct: 252  ED---------FSESKIITISFLYATMPVWLXXFALGISSDKEVFDMIXMQDCDASVINT 302

Query: 826  ILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAM 647
            I ++I +++   +DFR  +   +Y+D+ +K++++P   S ++ +   LFP I G R KA+
Sbjct: 303  ISATIKESDKLCEDFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKAL 362

Query: 646  LLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDL 467
             LGYMV CLL ++ G+R+ +NKDD+RNKRL+L GELLGR+++  LR   K+++KAIQ+DL
Sbjct: 363  FLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDL 422

Query: 466  SGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEM 287
            +  ++L+ +E YID+S++TNGL RAFSTG+W HP   A +C+G+VA++++ NPLQ++S++
Sbjct: 423  NSDRELQDLERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDL 482

Query: 286  RRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSVNSSEKPLI 107
            R+ R  V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT++VS +   +PLI
Sbjct: 483  RKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVS-SRVMQPLI 541

Query: 106  EFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGIC 2
            E     G+ KL+D+       M K+F+NG  +G C
Sbjct: 542  ESFISCGMSKLNDIPTEHIQRMDKIFLNGNWVGSC 576


>ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor]
            gi|241922081|gb|EER95225.1| hypothetical protein
            SORBIDRAFT_01g042100 [Sorghum bicolor]
          Length = 1228

 Score =  520 bits (1338), Expect = e-144
 Identities = 265/580 (45%), Positives = 383/580 (66%), Gaps = 1/580 (0%)
 Frame = -3

Query: 1738 KEMHAFSKEASKAFFDEWGLLSHQLNSFNDFISHGLQRLFDSLGDIEIEPDYNPKNKGSD 1559
            + +  F KEAS++FFDE GL+SHQ+NS+NDF+SHGLQ LFDSLG++ +EP Y+P  KGS 
Sbjct: 84   ESLEKFCKEASRSFFDEVGLISHQINSYNDFVSHGLQELFDSLGEVIVEPGYDPSKKGS- 142

Query: 1558 GNWRRGIITLGEVTVEKPSY-ADKDGNRVDLKPSEARLRNMTYSSPVYVDAKIKTYLNDS 1382
            G W+  II  G V +EKP +   KD   VD KP  ARL+NMTY+S + V+  I+ Y  + 
Sbjct: 143  GGWKHAIIKFGRVKLEKPVFWTGKDEGSVDFKPWHARLQNMTYASRLIVEVNIQVYSLE- 201

Query: 1381 PKVDSKSKASTSFLSKGGKYSSNILDQSKRILIGRIPVMVKSKLCHLYGLGPEQLLKERD 1202
             K D     +  F+ K      + ++++  I IG +PVMVKS LC L+ L      KE +
Sbjct: 202  -KSDKSKTGNDGFVQK-----RDFMNETHWIFIGLLPVMVKSNLCLLHSL------KESE 249

Query: 1201 CYFDLGGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLN 1022
            C FD GGYF++KG EKVFIAQE RC  R+W+ ++P WM  +     R      ++ +KL 
Sbjct: 250  CLFDAGGYFLVKGMEKVFIAQELRCLKRLWIIDRPCWMISFMSEMKRR-----RIYIKLV 304

Query: 1021 EDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDR 842
            E  +++           S    I +SF + T+PV LLF+ALGISSD E   +I     D 
Sbjct: 305  ESTRSED---------FSGSKIISISFLYATMPVWLLFFALGISSDKEAFDVIDMQDCDA 355

Query: 841  EICEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQ 662
             +   I ++I +++   + FR  +   +Y+D+ +K++++P   S ++ +   LFP I G 
Sbjct: 356  SVINTISATIKESDELCEGFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGN 415

Query: 661  REKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKA 482
            R KA+ LGYMV CLL ++ G+R+ +NKDD+RNKRL+L GELLGR+++  LR   K+++KA
Sbjct: 416  RNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAHLRLAEKRMVKA 475

Query: 481  IQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQ 302
            IQ+DL+  ++L+ +E YID+S++TNGL+RAFSTG+W HP   A +C+G+VA++++ NPLQ
Sbjct: 476  IQRDLNSDRELQDLERYIDASIVTNGLSRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQ 535

Query: 301  VLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSVNSS 122
            ++S++R+ R  V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT++VS +  
Sbjct: 536  MMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVS-SRV 594

Query: 121  EKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGIC 2
             +PLIE     G+ KL+D+       M K+F+NG  +G C
Sbjct: 595  VQPLIESFISCGMSKLNDIPTEHIQRMDKIFLNGNWVGSC 634


>gb|AFW59623.1| putative DNA-directed RNA polymerase subunit family protein [Zea
            mays]
          Length = 2163

 Score =  516 bits (1328), Expect = e-143
 Identities = 266/580 (45%), Positives = 381/580 (65%), Gaps = 1/580 (0%)
 Frame = -3

Query: 1738 KEMHAFSKEASKAFFDEWGLLSHQLNSFNDFISHGLQRLFDSLGDIEIEPDYNPKNKGSD 1559
            + +  F KEAS++FFDE GL+SHQ+NS+N+F+SHGLQ LFDSLG++ +EP Y+P  KGS 
Sbjct: 1019 ESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPSKKGS- 1077

Query: 1558 GNWRRGIITLGEVTVEKPSY-ADKDGNRVDLKPSEARLRNMTYSSPVYVDAKIKTYLNDS 1382
            G+W+  II  G V +EKP +   KD   VD KP  ARL+NMTY+S + V+  I+ Y  + 
Sbjct: 1078 GSWKHAIIKFGRVKLEKPVFWTGKDEVSVDFKPWHARLQNMTYASRLRVEVTIQVYSLE- 1136

Query: 1381 PKVDSKSKASTSFLSKGGKYSSNILDQSKRILIGRIPVMVKSKLCHLYGLGPEQLLKERD 1202
             K D     +  F+ K      N ++++  I IG +PVMVKS LC L+ L      KE +
Sbjct: 1137 -KSDKSKTGNDGFVQK-----RNFMNETHWIFIGLLPVMVKSNLCLLHSL------KESE 1184

Query: 1201 CYFDLGGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLN 1022
            C FD GGYF++KG EKVFIAQE RC  R+W+ ++P W   +     R      ++ +KL 
Sbjct: 1185 CLFDAGGYFLVKGMEKVFIAQELRCLRRLWISDRPCWTISFMSEMKRR-----RIYIKLV 1239

Query: 1021 EDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDR 842
            E  +++           S    I +SF + T+PV LLF+ALGISSD E   +I     D 
Sbjct: 1240 ESTRSED---------FSGSKIISISFLYATMPVWLLFFALGISSDKEAFDVIDMQDCDA 1290

Query: 841  EICEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQ 662
             +   I ++I +++     FR  +   +Y+D+ +K++K+P   S ++ +   LFP I G 
Sbjct: 1291 SVINTISATIKESDELCGGFRKSDKARQYVDELVKSSKFPPVESFDDYIAKFLFPGISGN 1350

Query: 661  REKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKA 482
            R KA+ LGYMV CLL ++ G+R+ +NKDD+RNKRL+L GELLGR+++  LR   ++++KA
Sbjct: 1351 RNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAHLRQAERRMVKA 1410

Query: 481  IQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQ 302
            IQ+DL+  ++L+ +E YID+S++TNGL RAFSTG+W HP   A +C+G+VA++++ NPLQ
Sbjct: 1411 IQRDLNSDRELQDLERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQ 1470

Query: 301  VLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSVNSS 122
            ++S++R+ R  V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVTS+VS +  
Sbjct: 1471 MMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTSIVS-SKV 1529

Query: 121  EKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGIC 2
             +PLIE     G+ KL+D+       M K+F+NG  LG C
Sbjct: 1530 VQPLIESFISCGMNKLNDIPTEHIQRMDKIFLNGNWLGSC 1569


>gb|EEE61785.1| hypothetical protein OsJ_16357 [Oryza sativa Japonica Group]
          Length = 1185

 Score =  509 bits (1311), Expect = e-141
 Identities = 264/584 (45%), Positives = 381/584 (65%), Gaps = 7/584 (1%)
 Frame = -3

Query: 1732 MHAFSKEASKAFFDEWGLLSHQLNSFNDFISHGLQRLFDSLGDIEIEPDYNPKNKGSDGN 1553
            +  F KEAS++FFDE GL+SHQ+NS+N+F+SHGLQ LFDSLG++ +EP Y+P N+G  G 
Sbjct: 83   LEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSNRGP-GG 141

Query: 1552 WRRGIITLGEVTVEKPSY----ADKDGNRVDLKPSEARLRNMTYSSPVYVDAKIKTYLND 1385
            WR  II  G V +E+P +     D D   + LKP  ARL+NMTYSS + V+   + Y   
Sbjct: 142  WRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQVY--- 198

Query: 1384 SPKVDSKSKASTSFLSKGGKYSSNILDQSKRILIGRIPVMVKSKLCHLYGLGPEQLLKER 1205
               ++   KA T     G  Y  NI++++  I IGR+PVMV S LC L+ L      KE 
Sbjct: 199  --SMEKSDKAKTGNDKFG--YKRNIINETYYINIGRLPVMVMSNLCWLHKL------KES 248

Query: 1204 DCYFDLGGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVY-TPSNDR--YLKKWDKVI 1034
            DC FD GGYF+IKG EKVFIAQE++C TRIWV+++P WM  + +P   R  Y+K  D   
Sbjct: 249  DCQFDSGGYFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKLIDSAN 308

Query: 1033 VKLNEDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCS 854
               NED    K               I +SF +  +P+ L+F+ALGISSD ++  +I   
Sbjct: 309  ---NEDASGGKI--------------ISISFLYANMPIWLMFFALGISSDKDIFDVINME 351

Query: 853  HEDREICEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPF 674
              D  +   I ++I +++   + FR  +   +Y+D+ +KN+K+P     ++ +  +LFP 
Sbjct: 352  DCDACVINTITATIKESDELCEGFRKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPS 411

Query: 673  IKGQREKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKK 494
            I G R KA+ LGYMV CLL ++ G+R+ +NKDD+RNKRL+LAGELLGR+++  +R   + 
Sbjct: 412  ISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERL 471

Query: 493  ILKAIQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQV 314
            ++KA+Q+DL+ +++L+  + Y+D+S+ITNGL RAFSTG+W HP     +C G+VA++++ 
Sbjct: 472  MVKALQRDLNSERELQEFDHYLDASIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRT 531

Query: 313  NPLQVLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVS 134
            NPLQ++S++R+ R  V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT+ VS
Sbjct: 532  NPLQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVS 591

Query: 133  VNSSEKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGIC 2
             +    PLI+     G+ KL ++   +   M K+F+NG+ +G C
Sbjct: 592  -SRVAPPLIDRFISCGMNKLHEIPTEEVPRMDKIFLNGDWVGSC 634


>gb|EEC78111.1| hypothetical protein OsI_17620 [Oryza sativa Indica Group]
          Length = 1177

 Score =  509 bits (1311), Expect = e-141
 Identities = 264/584 (45%), Positives = 381/584 (65%), Gaps = 7/584 (1%)
 Frame = -3

Query: 1732 MHAFSKEASKAFFDEWGLLSHQLNSFNDFISHGLQRLFDSLGDIEIEPDYNPKNKGSDGN 1553
            +  F KEAS++FFDE GL+SHQ+NS+N+F+SHGLQ LFDSLG++ +EP Y+P N+G  G 
Sbjct: 83   LEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSNRGP-GG 141

Query: 1552 WRRGIITLGEVTVEKPSY----ADKDGNRVDLKPSEARLRNMTYSSPVYVDAKIKTYLND 1385
            WR  II  G V +E+P +     D D   + LKP  ARL+NMTYSS + V+   + Y   
Sbjct: 142  WRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQVY--- 198

Query: 1384 SPKVDSKSKASTSFLSKGGKYSSNILDQSKRILIGRIPVMVKSKLCHLYGLGPEQLLKER 1205
               ++   KA T     G  Y  NI++++  I IGR+PVMV S LC L+ L      KE 
Sbjct: 199  --SMEKSDKAKTGNDKFG--YKRNIINETYYINIGRLPVMVMSNLCWLHKL------KES 248

Query: 1204 DCYFDLGGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVY-TPSNDR--YLKKWDKVI 1034
            DC FD GGYF+IKG EKVFIAQE++C TRIWV+++P WM  + +P   R  Y+K  D   
Sbjct: 249  DCQFDSGGYFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKLIDSAN 308

Query: 1033 VKLNEDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCS 854
               NED    K               I +SF +  +P+ L+F+ALGISSD ++  +I   
Sbjct: 309  ---NEDASGGKI--------------ISISFLYANMPIWLMFFALGISSDKDIFDVINME 351

Query: 853  HEDREICEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPF 674
              D  +   I ++I +++   + FR  +   +Y+D+ +KN+K+P     ++ +  +LFP 
Sbjct: 352  DCDACVINTITATIKESDELCEGFRKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPS 411

Query: 673  IKGQREKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKK 494
            I G R KA+ LGYMV CLL ++ G+R+ +NKDD+RNKRL+LAGELLGR+++  +R   + 
Sbjct: 412  ISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERL 471

Query: 493  ILKAIQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQV 314
            ++KA+Q+DL+ +++L+  + Y+D+S+ITNGL RAFSTG+W HP     +C G+VA++++ 
Sbjct: 472  MVKALQRDLNSERELQEFDHYLDASIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRT 531

Query: 313  NPLQVLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVS 134
            NPLQ++S++R+ R  V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT+ VS
Sbjct: 532  NPLQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVS 591

Query: 133  VNSSEKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGIC 2
             +    PLI+     G+ KL ++   +   M K+F+NG+ +G C
Sbjct: 592  -SRVAPPLIDRFISCGMNKLHEIPTEEVPRMDKIFLNGDWVGSC 634


>ref|NP_001054041.1| Os04g0641000 [Oryza sativa Japonica Group]
            gi|113565612|dbj|BAF15955.1| Os04g0641000, partial [Oryza
            sativa Japonica Group]
          Length = 1270

 Score =  509 bits (1311), Expect = e-141
 Identities = 264/584 (45%), Positives = 381/584 (65%), Gaps = 7/584 (1%)
 Frame = -3

Query: 1732 MHAFSKEASKAFFDEWGLLSHQLNSFNDFISHGLQRLFDSLGDIEIEPDYNPKNKGSDGN 1553
            +  F KEAS++FFDE GL+SHQ+NS+N+F+SHGLQ LFDSLG++ +EP Y+P N+G  G 
Sbjct: 101  LEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSNRGP-GG 159

Query: 1552 WRRGIITLGEVTVEKPSY----ADKDGNRVDLKPSEARLRNMTYSSPVYVDAKIKTYLND 1385
            WR  II  G V +E+P +     D D   + LKP  ARL+NMTYSS + V+   + Y   
Sbjct: 160  WRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQVY--- 216

Query: 1384 SPKVDSKSKASTSFLSKGGKYSSNILDQSKRILIGRIPVMVKSKLCHLYGLGPEQLLKER 1205
               ++   KA T     G  Y  NI++++  I IGR+PVMV S LC L+ L      KE 
Sbjct: 217  --SMEKSDKAKTGNDKFG--YKRNIINETYYINIGRLPVMVMSNLCWLHKL------KES 266

Query: 1204 DCYFDLGGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVY-TPSNDR--YLKKWDKVI 1034
            DC FD GGYF+IKG EKVFIAQE++C TRIWV+++P WM  + +P   R  Y+K  D   
Sbjct: 267  DCQFDSGGYFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKLIDSAN 326

Query: 1033 VKLNEDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCS 854
               NED    K               I +SF +  +P+ L+F+ALGISSD ++  +I   
Sbjct: 327  ---NEDASGGKI--------------ISISFLYANMPIWLMFFALGISSDKDIFDVINME 369

Query: 853  HEDREICEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPF 674
              D  +   I ++I +++   + FR  +   +Y+D+ +KN+K+P     ++ +  +LFP 
Sbjct: 370  DCDACVINTITATIKESDELCEGFRKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPS 429

Query: 673  IKGQREKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKK 494
            I G R KA+ LGYMV CLL ++ G+R+ +NKDD+RNKRL+LAGELLGR+++  +R   + 
Sbjct: 430  ISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERL 489

Query: 493  ILKAIQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQV 314
            ++KA+Q+DL+ +++L+  + Y+D+S+ITNGL RAFSTG+W HP     +C G+VA++++ 
Sbjct: 490  MVKALQRDLNSERELQEFDHYLDASIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRT 549

Query: 313  NPLQVLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVS 134
            NPLQ++S++R+ R  V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT+ VS
Sbjct: 550  NPLQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVS 609

Query: 133  VNSSEKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGIC 2
             +    PLI+     G+ KL ++   +   M K+F+NG+ +G C
Sbjct: 610  -SRVAPPLIDRFISCGMNKLHEIPTEEVPRMDKIFLNGDWVGSC 652


>emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]
          Length = 1316

 Score =  509 bits (1311), Expect = e-141
 Identities = 264/584 (45%), Positives = 381/584 (65%), Gaps = 7/584 (1%)
 Frame = -3

Query: 1732 MHAFSKEASKAFFDEWGLLSHQLNSFNDFISHGLQRLFDSLGDIEIEPDYNPKNKGSDGN 1553
            +  F KEAS++FFDE GL+SHQ+NS+N+F+SHGLQ LFDSLG++ +EP Y+P N+G  G 
Sbjct: 147  LEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSNRGP-GG 205

Query: 1552 WRRGIITLGEVTVEKPSY----ADKDGNRVDLKPSEARLRNMTYSSPVYVDAKIKTYLND 1385
            WR  II  G V +E+P +     D D   + LKP  ARL+NMTYSS + V+   + Y   
Sbjct: 206  WRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQVY--- 262

Query: 1384 SPKVDSKSKASTSFLSKGGKYSSNILDQSKRILIGRIPVMVKSKLCHLYGLGPEQLLKER 1205
               ++   KA T     G  Y  NI++++  I IGR+PVMV S LC L+ L      KE 
Sbjct: 263  --SMEKSDKAKTGNDKFG--YKRNIINETYYINIGRLPVMVMSNLCWLHKL------KES 312

Query: 1204 DCYFDLGGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVY-TPSNDR--YLKKWDKVI 1034
            DC FD GGYF+IKG EKVFIAQE++C TRIWV+++P WM  + +P   R  Y+K  D   
Sbjct: 313  DCQFDSGGYFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKLIDSAN 372

Query: 1033 VKLNEDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCS 854
               NED    K               I +SF +  +P+ L+F+ALGISSD ++  +I   
Sbjct: 373  ---NEDASGGKI--------------ISISFLYANMPIWLMFFALGISSDKDIFDVINME 415

Query: 853  HEDREICEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPF 674
              D  +   I ++I +++   + FR  +   +Y+D+ +KN+K+P     ++ +  +LFP 
Sbjct: 416  DCDACVINTITATIKESDELCEGFRKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPS 475

Query: 673  IKGQREKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKK 494
            I G R KA+ LGYMV CLL ++ G+R+ +NKDD+RNKRL+LAGELLGR+++  +R   + 
Sbjct: 476  ISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERL 535

Query: 493  ILKAIQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQV 314
            ++KA+Q+DL+ +++L+  + Y+D+S+ITNGL RAFSTG+W HP     +C G+VA++++ 
Sbjct: 536  MVKALQRDLNSERELQEFDHYLDASIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRT 595

Query: 313  NPLQVLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVS 134
            NPLQ++S++R+ R  V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT+ VS
Sbjct: 596  NPLQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVS 655

Query: 133  VNSSEKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGIC 2
             +    PLI+     G+ KL ++   +   M K+F+NG+ +G C
Sbjct: 656  -SRVAPPLIDRFISCGMNKLHEIPTEEVPRMDKIFLNGDWVGSC 698


>ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
            [Brachypodium distachyon]
          Length = 1213

 Score =  508 bits (1309), Expect = e-141
 Identities = 264/584 (45%), Positives = 379/584 (64%), Gaps = 7/584 (1%)
 Frame = -3

Query: 1732 MHAFSKEASKAFFDEWGLLSHQLNSFNDFISHGLQRLFDSLGDIEIEPDYNPKNKGSDGN 1553
            +  F KEAS++FF+E GL+SHQ+NS+N+FISHGLQ LFDSLG++ +EP Y+P  KG  G 
Sbjct: 66   LEKFCKEASRSFFEEIGLISHQINSYNEFISHGLQELFDSLGEVTVEPGYDPSKKGP-GG 124

Query: 1552 WRRGIITLGEVTVEKPSY----ADKDGNRVDLKPSEARLRNMTYSSPVYVDAKIKTYLND 1385
            WR  II  G+V +E+P +     D D   + LKP  ARL+NMTYSS + V+  I+ Y   
Sbjct: 125  WRHAIIKFGKVKLEEPVFWSGKIDIDEESLKLKPRHARLQNMTYSSKMEVEVNIQVY--- 181

Query: 1384 SPKVDSKSKASTSFLSKGGKYSSNILDQSKRILIGRIPVMVKSKLCHLYGLGPEQLLKER 1205
               ++   KA T     G K   +I++++  + IGR+PVMV S LC L+ LG      E 
Sbjct: 182  --SMEKSDKAKTGNDHFGHK--RDIINETHWVTIGRLPVMVNSDLCWLHKLG------ES 231

Query: 1204 DCYFDLGGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDR---YLKKWDKVI 1034
            DC FD GGYF+IKG EK+FIAQE+RC TRIWV ++P W   Y     R   Y+K  D   
Sbjct: 232  DCLFDSGGYFLIKGMEKIFIAQEQRCLTRIWVADQPCWNVSYLSEMKRRRVYIKLIDSTT 291

Query: 1033 VKLNEDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCS 854
               N D+   K               I +SF +  +P+ LLF+ALG+SSD E+  MI   
Sbjct: 292  ---NNDLNGAKI--------------ISISFLYANMPIWLLFFALGVSSDKEVFDMIDMK 334

Query: 853  HEDREICEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPF 674
              D  +   I ++I +++   + FR  +   KY+DD +K++K+P      + +  +LFP 
Sbjct: 335  DCDASVINAIYATIRESDELCEGFRQSDKARKYVDDLVKSSKFPPAEPFTDYVAKYLFPG 394

Query: 673  IKGQREKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKK 494
            I G R K+  LGYMV CLL ++ G+R+ +NKDD+RNKRLEL G+LLGR+++  LR   + 
Sbjct: 395  ISGNRNKSFFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLELPGQLLGRELRAHLRHAERL 454

Query: 493  ILKAIQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQV 314
            ++KA+Q+DL+  +DL+    Y+D+S+ITNG+ RAF+TG+W HP     +C+G+VA++++ 
Sbjct: 455  MVKAMQRDLNSDRDLQFPLRYLDASIITNGINRAFATGSWSHPYIRNERCSGIVATLRRT 514

Query: 313  NPLQVLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVS 134
            NPLQ++S++R+ R  V YA K+GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT++VS
Sbjct: 515  NPLQMMSDLRKSRQQVAYAGKVGDARYPNPSYWGKMCFMSTPDGENCGLVKNLAVTAIVS 574

Query: 133  VNSSEKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGIC 2
             +   +PLI+     G+ KLD++S  +   M K+F+NG+ +G C
Sbjct: 575  -SRVVQPLIDRFVSCGMNKLDEISAKEIPKMDKIFLNGDWIGSC 617


>ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
            [Brachypodium distachyon]
          Length = 1213

 Score =  506 bits (1304), Expect = e-141
 Identities = 263/584 (45%), Positives = 378/584 (64%), Gaps = 7/584 (1%)
 Frame = -3

Query: 1732 MHAFSKEASKAFFDEWGLLSHQLNSFNDFISHGLQRLFDSLGDIEIEPDYNPKNKGSDGN 1553
            +  F KEAS++FF+E GL+SHQ+NS+N+F+SHGLQ LFDSLG++ +EP Y+P  KG  G 
Sbjct: 66   LEKFCKEASRSFFEEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPGYDPSKKGP-GG 124

Query: 1552 WRRGIITLGEVTVEKPSYADK----DGNRVDLKPSEARLRNMTYSSPVYVDAKIKTYLND 1385
            WR  II  G+V +E+P +       D   + LKP  ARL+NMTYSS + V+  I+ Y   
Sbjct: 125  WRHAIIKFGKVKLEEPVFWSGKIGIDEESLKLKPRHARLQNMTYSSKMEVEVNIQVY--- 181

Query: 1384 SPKVDSKSKASTSFLSKGGKYSSNILDQSKRILIGRIPVMVKSKLCHLYGLGPEQLLKER 1205
               ++   KA T     G K   +I++++  + IGR+PVMV S LC L+ LG      E 
Sbjct: 182  --SMEKSDKAKTGNDHFGHK--RDIINETHWVTIGRLPVMVNSDLCWLHKLG------ES 231

Query: 1204 DCYFDLGGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDR---YLKKWDKVI 1034
            DC FD GGYF+IKG EK+FIAQE+RC TRIWV ++P W   Y     R   Y+K  D   
Sbjct: 232  DCLFDSGGYFLIKGMEKIFIAQEQRCLTRIWVADRPCWNVSYLSEMKRRRVYIKLIDSTT 291

Query: 1033 VKLNEDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCS 854
               N D+   K               I +SF +  +P+ LLF+ALG+SSD E+  MI   
Sbjct: 292  ---NNDLNGAKI--------------ISISFLYANMPIWLLFFALGVSSDKEVFDMIDMK 334

Query: 853  HEDREICEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPF 674
              D  +   I ++I +++   + FR  +   KY+DD +K++K+P      + +  +LFP 
Sbjct: 335  DCDASVINAISATIRESDELCEGFRQSDKARKYVDDLVKSSKFPPAEPFTDYVAKYLFPG 394

Query: 673  IKGQREKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKK 494
            I G R KA  LGYMV CLL ++ G+R+ +NKDD+RNKRLEL G+LLGR+++  LR   + 
Sbjct: 395  ISGNRNKAFFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLELPGQLLGRELRAHLRHAERL 454

Query: 493  ILKAIQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQV 314
            ++KA+Q+DL+  +DL+    Y+D+S+ITNG+ RAF+TG+W HP     +C+G+VA++++ 
Sbjct: 455  MVKAMQRDLNSDRDLQFPLRYLDASIITNGINRAFATGSWSHPYIRNERCSGIVATLRRT 514

Query: 313  NPLQVLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVS 134
            NPLQ++S++R+ R  V YA K+GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT++VS
Sbjct: 515  NPLQMMSDLRKSRQQVAYAGKVGDARYPNPSYWGKMCFMSTPDGENCGLVKNLAVTAIVS 574

Query: 133  VNSSEKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGIC 2
             +   +PLI+     G+ KLD++S  +   M K+F+NG+ +G C
Sbjct: 575  -SRVVQPLIDRFVSCGMNKLDEISAKEIPKMDKIFLNGDWIGSC 617


>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1217

 Score =  505 bits (1301), Expect = e-140
 Identities = 254/587 (43%), Positives = 382/587 (65%), Gaps = 7/587 (1%)
 Frame = -3

Query: 1741 EKEMHAFSKEASKAFFDEWGLLSHQLNSFNDFISHGLQRLFDSLGDIEIEPDYNPKNKGS 1562
            E  +  F K+AS  FF+++GL+SHQ+NS+NDFI++G+QR+FDS+G+I +EP Y+P  +G 
Sbjct: 63   ETYLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRG- 121

Query: 1561 DGNWRRGIITLGEVTVEKPSY-------ADKDGNRVDLKPSEARLRNMTYSSPVYVDAKI 1403
            DG+W+   +  G+VT+E+P +       AD     +DL P  ARL+NMTYS+ + V+  +
Sbjct: 122  DGDWKHASVKFGKVTLERPKFWAGEKFSADGGKEYLDLLPRHARLQNMTYSARIMVETHV 181

Query: 1402 KTYLNDSPKVDSKSKASTSFLSKGGKYSSNILDQSKRILIGRIPVMVKSKLCHLYGLGPE 1223
            + Y     + D        F+ K  +     ++  + +LIGRIPVMV S+LC + G+   
Sbjct: 182  QVYTKKLVRSDKFKTGVDQFVDKECE-----VEDKRDVLIGRIPVMVNSELCWMNGVD-- 234

Query: 1222 QLLKERDCYFDLGGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWD 1043
                + DC FD GGYFI+KG EK FIAQE+ C  R+WV N P WM  Y P   R      
Sbjct: 235  ----KLDCEFDHGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKR-----K 285

Query: 1042 KVIVKLNEDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMI 863
            +V +KL E +K +         +    ++ +  +    +P+ +LF+ALG+SSD E+V +I
Sbjct: 286  RVYIKLTETLKLE---------HIKGGEKALSVYILAEMPIWVLFFALGVSSDREVVNLI 336

Query: 862  GCSHEDREICEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHL 683
                ED  I   +++SI++A+   +DFR  +  L Y+D  +KN K+P   SVEE ++A+L
Sbjct: 337  DVDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYL 396

Query: 682  FPFIKGQREKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFL 503
            FP + G ++KA  LGYMV CLL S++GRR+V+N+DD+RNKRLELAGELL R+++  ++  
Sbjct: 397  FPNLSGFKQKARFLGYMVKCLLHSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHA 456

Query: 502  RKKILKAIQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASM 323
             ++++KA+Q+DL G + ++ +E Y+D+S+ITNGL+RAFSTG W HP     + +GVVA++
Sbjct: 457  ERRMVKAMQRDLYGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATL 516

Query: 322  KQVNPLQVLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTS 143
            ++ NPLQ+ ++MR+ R  V Y  K+GDARYP+PS+WG++CF+STPDGENCGLVKNLA   
Sbjct: 517  RRTNPLQMTADMRKSRQQVTYTGKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMG 576

Query: 142  VVSVNSSEKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGIC 2
            +VS     KP +E L + G+ KL D   +  H   KV ++GE +G+C
Sbjct: 577  LVS-TIILKPFLETLFRCGMQKLVDDCATSLHGKQKVLLDGEWVGVC 622


>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
            lycopersicum]
          Length = 1217

 Score =  503 bits (1296), Expect = e-140
 Identities = 253/587 (43%), Positives = 381/587 (64%), Gaps = 7/587 (1%)
 Frame = -3

Query: 1741 EKEMHAFSKEASKAFFDEWGLLSHQLNSFNDFISHGLQRLFDSLGDIEIEPDYNPKNKGS 1562
            E  +  F K+AS  FF+++GL+SHQ+NS+NDFI++G+QR+FDS+G+I +EP Y+P  +G 
Sbjct: 63   ESFLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRG- 121

Query: 1561 DGNWRRGIITLGEVTVEKPSY-------ADKDGNRVDLKPSEARLRNMTYSSPVYVDAKI 1403
            DG+W+   +  G+VT+E+P +        D     +DL P  ARL+NMTYS+ + V+  +
Sbjct: 122  DGDWKHASVKFGKVTLERPKFWAGEKFSVDGGKEYLDLLPRHARLQNMTYSARIMVETHV 181

Query: 1402 KTYLNDSPKVDSKSKASTSFLSKGGKYSSNILDQSKRILIGRIPVMVKSKLCHLYGLGPE 1223
            + Y     + D        F+ K  +     ++  + +LIGRIPVMV S+LC + G+   
Sbjct: 182  QVYTKKLVRSDKFKTGVDRFVDKEWE-----VEDKRDVLIGRIPVMVNSELCWMNGVD-- 234

Query: 1222 QLLKERDCYFDLGGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWD 1043
                + DC FD GGYFI+KG EK FIAQE+ C  R+WV N P WM  Y P   R      
Sbjct: 235  ----KLDCEFDHGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKR-----K 285

Query: 1042 KVIVKLNEDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMI 863
            +V +KL E +K +         +    ++ +  +    +P+ +LF+ALG+SSD E+V +I
Sbjct: 286  RVYIKLTETLKLE---------HIKGGEKALSVYILAEMPIWVLFFALGVSSDREVVNLI 336

Query: 862  GCSHEDREICEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHL 683
                ED  I   +++SI++A+   +DFR  +  L Y+D  +KN K+P   SVEE ++A+L
Sbjct: 337  DVDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYL 396

Query: 682  FPFIKGQREKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFL 503
            FP + G ++KA  LGYMV CLL S++GRR+V+N+DD+RNKRLELAGELL R+++  ++  
Sbjct: 397  FPNLSGFKQKARFLGYMVKCLLHSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHA 456

Query: 502  RKKILKAIQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASM 323
             ++++KA+Q+DL G + ++ +E Y+D+S+ITNGL+RAFSTG W HP     + +GVVA++
Sbjct: 457  ERRMVKAMQRDLYGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATL 516

Query: 322  KQVNPLQVLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTS 143
            ++ NPLQ+ ++MR+ R  V Y  K+GDARYP+PS+WG++CF+STPDGENCGLVKNLA   
Sbjct: 517  RRTNPLQMTADMRKSRQQVTYTGKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMG 576

Query: 142  VVSVNSSEKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGIC 2
            +VS     KP +E L + G+ KL D   +  H   KV ++GE +G+C
Sbjct: 577  LVS-TIILKPFLETLFRCGMQKLVDDCSTSLHGKQKVLLDGEWVGVC 622


>ref|XP_006652896.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Oryza brachyantha]
          Length = 1250

 Score =  500 bits (1287), Expect = e-139
 Identities = 254/581 (43%), Positives = 380/581 (65%), Gaps = 4/581 (0%)
 Frame = -3

Query: 1732 MHAFSKEASKAFFDEWGLLSHQLNSFNDFISHGLQRLFDSLGDIEIEPDYNPKNKGSDGN 1553
            +  F KEAS++FFDE GL+SHQ+NS+NDF+++GLQ LFDSLG++ +EP Y+P N+G  G 
Sbjct: 83   LEKFCKEASRSFFDEIGLISHQINSYNDFVAYGLQELFDSLGEVTVEPSYDPSNRGP-GG 141

Query: 1552 WRRGIITLGEVTVEKPSY----ADKDGNRVDLKPSEARLRNMTYSSPVYVDAKIKTYLND 1385
            WR  II  G V +E+P +     D D   + LKP  ARL+NMTYSS + V+  I+ Y   
Sbjct: 142  WRHAIIKFGRVKLEEPVFWAHGYDIDEESLKLKPRHARLQNMTYSSKMKVEVHIQVY--- 198

Query: 1384 SPKVDSKSKASTSFLSKGGKYSSNILDQSKRILIGRIPVMVKSKLCHLYGLGPEQLLKER 1205
            S +   K+K      S    Y  +I++++  I  GR+PVMV S LC L+ L      KE 
Sbjct: 199  SMEKSDKAKTGNDKFS----YKKDIINETHYINFGRLPVMVMSNLCWLHKL------KES 248

Query: 1204 DCYFDLGGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKL 1025
            DC FD GGYF+IKG EKVFIAQE++C TRIWV+ +P W   +  +  R      ++ +KL
Sbjct: 249  DCQFDSGGYFLIKGMEKVFIAQEQKCLTRIWVEERPCWTVSFLSAIRRR-----RIYIKL 303

Query: 1024 NEDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHED 845
             +  K              ++  I +SF +  +P+ L+F+ALGI+SD ++  +I     D
Sbjct: 304  IDSTK------------NEDRKIISISFLYANMPIWLMFFALGITSDKDVFDVIDMQDCD 351

Query: 844  REICEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKG 665
              +   I ++I +++   + FR  +   +Y+D+ +K++K+P     ++ +  +LFP I G
Sbjct: 352  ACVINTISATIKESDELCEGFRKSDRARQYVDELIKDSKFPPGEPFDDYVARYLFPGISG 411

Query: 664  QREKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILK 485
             R KA+ LGYMV CLL ++ G+R+ +NKDD+RNKRL+LAGELLGR+++  +R   + ++K
Sbjct: 412  NRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVK 471

Query: 484  AIQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPL 305
            A+Q+DL+  ++L+ ++ Y+D+S+ITNGL RAFSTG+W HP     +C G+VA++++ NPL
Sbjct: 472  ALQRDLNSDRELQELDRYLDASIITNGLNRAFSTGSWCHPYKKNERCAGIVATLRRTNPL 531

Query: 304  QVLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSVNS 125
            Q++S++R+ R  V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT+VVS   
Sbjct: 532  QMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAVVSSRV 591

Query: 124  SEKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGIC 2
            ++ P+I      G+ KL ++   +   M K+F+NG+ +G C
Sbjct: 592  AQ-PVINRFISCGMNKLHEIPTEEVPKMDKIFLNGDWVGSC 631


>gb|EMS61833.1| DNA-directed RNA polymerase D subunit 2a [Triticum urartu]
          Length = 1269

 Score =  500 bits (1287), Expect = e-139
 Identities = 257/581 (44%), Positives = 380/581 (65%), Gaps = 4/581 (0%)
 Frame = -3

Query: 1732 MHAFSKEASKAFFDEWGLLSHQLNSFNDFISHGLQRLFDSLGDIEIEPDYNPKNKGSDGN 1553
            +  F KEAS++FFDE+GL+SHQ+NS+N+F+SHGLQ LFDSLG++ +EP Y+   KG  G 
Sbjct: 88   LEKFCKEASRSFFDEFGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDLSKKGP-GG 146

Query: 1552 WRRGIITLGEVTVEKPSY----ADKDGNRVDLKPSEARLRNMTYSSPVYVDAKIKTYLND 1385
            W+  +I  G V +EKP +     D D   + LKP  ARL+NMTYSS + V+  I+ Y   
Sbjct: 147  WKHAVIRFGRVKLEKPVFWSGRDDVDEESLKLKPRHARLQNMTYSSKMEVEVHIQIY--- 203

Query: 1384 SPKVDSKSKASTSFLSKGGKYSSNILDQSKRILIGRIPVMVKSKLCHLYGLGPEQLLKER 1205
               ++   K+ T     G K    ++D++  + IGR+PVMV S LC L      + L+E 
Sbjct: 204  --SMEKSDKSKTEKDPFGHKRV--LMDETHVVNIGRLPVMVNSNLCWL------RELRES 253

Query: 1204 DCYFDLGGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKL 1025
            DC +D GGYF+I+G EK+FIAQE+RC TRIW+ ++PVW   Y     R      ++ VKL
Sbjct: 254  DCLYDSGGYFLIRGMEKIFIAQEQRCLTRIWIADRPVWTVSYLSEIKRR-----RIYVKL 308

Query: 1024 NEDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHED 845
             +        K+N+    S    I +SF +  +P+ L+F+ALG+SSD E   MI     D
Sbjct: 309  IDS------TKNND---FSGSKIISISFLYANMPIWLMFFALGVSSDKEAFDMIDMGDCD 359

Query: 844  REICEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKG 665
              +   I ++I +++   + FR  +   + +DD +K++K+P   S ++ +  +LFP IKG
Sbjct: 360  ASVINAISATISESDELCEGFRKSDKARQCVDDLVKSSKFPPGESFDDYIAKYLFPGIKG 419

Query: 664  QREKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILK 485
             R KA+ LGYMV CLL ++ G+R+ +NKDD+RNKRLEL G+LLGR+++  LR   + ++K
Sbjct: 420  NRNKALFLGYMVKCLLMAFTGKRRCDNKDDFRNKRLELPGQLLGRELRAHLRHAERLMVK 479

Query: 484  AIQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPL 305
            A+Q+DL+  +DL+    Y+D+S+ITNG+ RAF+TG+W HP     +C+G+VA++++ NPL
Sbjct: 480  AMQRDLNSDRDLEFPTRYLDASIITNGINRAFATGSWCHPYKRNERCSGIVATLRRTNPL 539

Query: 304  QVLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSVNS 125
            Q++S++R+ R  V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT++VS   
Sbjct: 540  QMMSDLRKSRQQVAYAGKAGDARYPNPSYWGKMCFMSTPDGENCGLVKNLAVTAIVSSRV 599

Query: 124  SEKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGIC 2
            ++ PLI+     G+ KLD++       M K+F+NG+ +G C
Sbjct: 600  AQ-PLIDRFVSCGMNKLDEIPAKQIPKMDKIFLNGDWVGSC 639


>ref|XP_003580654.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
            [Brachypodium distachyon]
          Length = 1236

 Score =  497 bits (1280), Expect = e-138
 Identities = 261/582 (44%), Positives = 372/582 (63%), Gaps = 5/582 (0%)
 Frame = -3

Query: 1732 MHAFSKEASKAFFDEWGLLSHQLNSFNDFISHGLQRLFDSLGDIEIEPDYNPKNKGSDGN 1553
            +  F KEAS++FFDE GL+SHQ+NS+NDFISHGLQ LFDSLG++ +EP Y+P  KG  G 
Sbjct: 88   LEKFCKEASRSFFDEIGLISHQINSYNDFISHGLQELFDSLGEVTVEPSYDPSKKGP-GG 146

Query: 1552 WRRGIITLGEVTVEKPSY-----ADKDGNRVDLKPSEARLRNMTYSSPVYVDAKIKTYLN 1388
            WR  II  G+V +++P +      DK    + LKP  ARL+NMTYSS + V+  I+ Y  
Sbjct: 147  WRHAIIKFGKVKLQEPVFWSDKCEDKYEEALKLKPRHARLQNMTYSSKMEVEMNIQVY-- 204

Query: 1387 DSPKVDSKSKASTSFLSKGGKYSSNILDQSKRILIGRIPVMVKSKLCHLYGLGPEQLLKE 1208
                ++   KA T     G K   +I++++  + +GR+PVMV S LC L+ LG      E
Sbjct: 205  ---SMEKSDKAKTENDHFGHK--RDIINETHWVSVGRLPVMVNSNLCWLHKLG------E 253

Query: 1207 RDCYFDLGGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVK 1028
             DC FD GGYF+IKG EK+FIAQE+RC TRIWV ++P W   Y     R      +  VK
Sbjct: 254  SDCLFDSGGYFLIKGMEKIFIAQEQRCLTRIWVDDRPCWTVSYMSEIKR-----KRTYVK 308

Query: 1027 LNEDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHE 848
            L +  K+            SE   I +SF +  +PV L+F+ALGISSD E+  +I     
Sbjct: 309  LIDSTKSND---------FSESKIISISFLYANMPVWLMFFALGISSDKEVFDIIDFKDS 359

Query: 847  DREICEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIK 668
            D  +   I ++I ++    + FR  +   +Y+DD +K++K+P   S ++ +   LFP I 
Sbjct: 360  DASVINMISATISESNELCEGFRKSDKARQYVDDLVKSSKFPPAESFDDYVARFLFPGIS 419

Query: 667  GQREKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKIL 488
            G R KA  LGYMV  LL ++ G+ + +N+D +RNKRLEL GELLGR+++  LR   + ++
Sbjct: 420  GNRNKAFFLGYMVKYLLMAFTGKLKCDNRDAFRNKRLELPGELLGRELRAHLRHAERLMV 479

Query: 487  KAIQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNP 308
            KA+Q+DL+  +DL+    Y+D ++ITNG+ RAF+TG+W HP     +C+GVVA++++ NP
Sbjct: 480  KAMQRDLNSDRDLQFPLGYLDPTIITNGINRAFATGSWCHPYKRNERCSGVVATLRRTNP 539

Query: 307  LQVLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSVN 128
            LQ++S++R+ R  V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT++VS +
Sbjct: 540  LQMMSDLRKSRQQVAYAGKAGDARYPNPSYWGKMCFMSTPDGENCGLVKNLAVTAIVS-S 598

Query: 127  SSEKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGIC 2
               +PLI+     G+ KLD++       M K+F+NG  +G C
Sbjct: 599  RVVQPLIDRFVSCGMNKLDEIPAGQIPKMDKIFLNGNWVGSC 640