BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00019041
         (1040 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum de...   263   8e-68
gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum de...   263   8e-68
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   263   1e-67
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...   260   7e-67
gb|AAT38699.2| RNA dependent RNA polymerase family protein [Sola...   260   7e-67
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...   259   9e-67
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   258   2e-66
ref|XP_006469266.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   258   3e-66
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   258   3e-66
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola...   258   3e-66
gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tu...   257   6e-66
gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum de...   256   8e-66
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   255   2e-65
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   254   5e-65
emb|CBI26820.3| unnamed protein product [Vitis vinifera]              252   1e-64
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   252   1e-64
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]   252   1e-64
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       252   2e-64
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   251   3e-64
emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]       250   7e-64

>gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1139

 Score =  263 bits (672), Expect = 8e-68
 Identities = 137/253 (54%), Positives = 178/253 (70%), Gaps = 1/253 (0%)
 Frame = -3

Query: 1038 NDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPD 859
            ND+LGII+  H VFAD EP+MA S  C  LA+LF++AVDFPKTGVPAE+PS L PKEYPD
Sbjct: 878  NDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPD 937

Query: 858  FMEKEDKPTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDA 679
            FM+K DK TY+S+RVIG L+R +KD A Q+ SI+ FTR+VA R+YD DLE   + +YID 
Sbjct: 938  FMDKPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDVDLEVDGFEDYIDE 997

Query: 678  AFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKEL 499
            AF+ K  YD+ L ++M +YGIK EAEI+SG I   SK    R  + +AI + V+ALRKE 
Sbjct: 998  AFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFD-RRKDAEAISIAVRALRKEA 1056

Query: 498  RSFFETNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWIVHDKLL 322
            R++F+   +  + D    ASAWYH+TYHP YWG Y    ++D    HFISFPW V+D+L+
Sbjct: 1057 RTWFKR--RNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRD----HFISFPWCVYDQLI 1110

Query: 321  TIKRNKTKGSKLL 283
             IK+ K     +L
Sbjct: 1111 QIKKEKALNRPVL 1123


>gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1180

 Score =  263 bits (672), Expect = 8e-68
 Identities = 137/253 (54%), Positives = 178/253 (70%), Gaps = 1/253 (0%)
 Frame = -3

Query: 1038 NDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPD 859
            ND+LGII+  H VFAD EP+MA S  C  LA+LF++AVDFPKTGVPAE+PS L PKEYPD
Sbjct: 919  NDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPD 978

Query: 858  FMEKEDKPTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDA 679
            FM+K DK TY+S+RVIG L+R +KD A Q+ SI+ FTR+VA R+YD DLE   + +YID 
Sbjct: 979  FMDKPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDADLEVDGFEDYIDE 1038

Query: 678  AFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKEL 499
            AF+ K  YD+ L ++M +YGIK EAEI+SG I   SK    R  + +AI + V+ALRKE 
Sbjct: 1039 AFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFD-RRKDAEAISVAVRALRKEA 1097

Query: 498  RSFFETNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWIVHDKLL 322
            R++F+   +  + D    ASAWYH+TYHP YWG Y    ++D    HFISFPW V+D+L+
Sbjct: 1098 RTWFKR--RNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRD----HFISFPWCVYDQLI 1151

Query: 321  TIKRNKTKGSKLL 283
             IK+ K     +L
Sbjct: 1152 QIKKEKALNRPVL 1164


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score =  263 bits (671), Expect = 1e-67
 Identities = 134/252 (53%), Positives = 180/252 (71%)
 Frame = -3

Query: 1038 NDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPD 859
            ND+LGII+  H VFAD EP+MA S  C  LA+LF++AVDFPKTGVPAE+PS L PKEYPD
Sbjct: 853  NDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPD 912

Query: 858  FMEKEDKPTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDA 679
            FM+K DK +Y+S+RVIG L+R +KD A Q+ SI++FTR+VA R+YD D+E   + +YID 
Sbjct: 913  FMDKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDVARRSYDADMEVDGFEDYIDE 972

Query: 678  AFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKEL 499
            AF+ K  YD+ L ++M +YGIK EAEI+SG I   SK    R  + +AI + V+ALRKE 
Sbjct: 973  AFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFD-RRKDAEAISVAVRALRKEA 1031

Query: 498  RSFFETNVKALVADEYEMASAWYHITYHPQYWGYGDYTEKDRSKPHFISFPWIVHDKLLT 319
            R++F+   +  + D    ASAWYH+TYHP YWG  +   K   + HFISFPW V+D+L+ 
Sbjct: 1032 RAWFKR--RNDIDDMLPKASAWYHVTYHPTYWGCYNQGLK---RAHFISFPWCVYDQLIQ 1086

Query: 318  IKRNKTKGSKLL 283
            IK++K +   +L
Sbjct: 1087 IKKDKARNRPVL 1098


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score =  260 bits (664), Expect = 7e-67
 Identities = 137/254 (53%), Positives = 179/254 (70%), Gaps = 2/254 (0%)
 Frame = -3

Query: 1038 NDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPD 859
            ND+LGII+  H VFAD EP+MA S  C  LA+LF++AVDFPKTGVPAE+PS L PKEYPD
Sbjct: 853  NDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPD 912

Query: 858  FMEKE-DKPTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYID 682
            FM+K  DK TY+S+RVIG L+R +KD A Q+ SI+ FTR+VA R+YD DLE   + +YID
Sbjct: 913  FMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDADLEVDGFEDYID 972

Query: 681  AAFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKE 502
             AF+ K  YD+ L ++M +YGIK EAEI+SG I   SK    R  + +AI + V+ALRKE
Sbjct: 973  EAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFD-RRKDAEAISVAVRALRKE 1031

Query: 501  LRSFFETNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWIVHDKL 325
             R++F+   +  + D    ASAWYH+TYHP YWG Y    ++D    HFISFPW V+D+L
Sbjct: 1032 ARTWFKR--RNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRD----HFISFPWCVYDQL 1085

Query: 324  LTIKRNKTKGSKLL 283
            + IK+ K +   +L
Sbjct: 1086 IQIKKEKARNRPVL 1099


>gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  260 bits (664), Expect = 7e-67
 Identities = 137/254 (53%), Positives = 179/254 (70%), Gaps = 2/254 (0%)
 Frame = -3

Query: 1038 NDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPD 859
            ND+LGII+  H VFAD EP+MA S  C  LA+LF++AVDFPKTGVPAE+PS L PKEYPD
Sbjct: 701  NDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPD 760

Query: 858  FMEKE-DKPTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYID 682
            FM+K  DK TY+S+RVIG L+R +KD A Q+ SI+ FTR+VA R+YD DLE   + +YID
Sbjct: 761  FMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDADLEVDGFEDYID 820

Query: 681  AAFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKE 502
             AF+ K  YD+ L ++M +YGIK EAEI+SG I   SK    R  + +AI + V+ALRKE
Sbjct: 821  EAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFD-RRKDAEAISVAVRALRKE 879

Query: 501  LRSFFETNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWIVHDKL 325
             R++F+   +  + D    ASAWYH+TYHP YWG Y    ++D    HFISFPW V+D+L
Sbjct: 880  ARTWFKR--RNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRD----HFISFPWCVYDQL 933

Query: 324  LTIKRNKTKGSKLL 283
            + IK+ K +   +L
Sbjct: 934  IQIKKEKARNRPVL 947


>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
            gi|548853371|gb|ERN11375.1| hypothetical protein
            AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score =  259 bits (663), Expect = 9e-67
 Identities = 137/255 (53%), Positives = 178/255 (69%), Gaps = 10/255 (3%)
 Frame = -3

Query: 1038 NDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPD 859
            ND+LGII+  HTVFAD EP  A S  C+DLA LF++AVDFPKTGVPA++P  L  KEYPD
Sbjct: 938  NDSLGIIANAHTVFADKEPMKADSTPCVDLANLFSVAVDFPKTGVPADIPQHLYVKEYPD 997

Query: 858  FMEKEDKPTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDA 679
            FM+K DKPTY S+RVIG L+R +KD    + +I+SFT+ VA ++YD D+E   +  Y+D 
Sbjct: 998  FMDKTDKPTYQSRRVIGKLFREVKDLPPHTSAITSFTKSVALKSYDLDMEVDGFELYLDD 1057

Query: 678  AFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKEL 499
            A   K+ YD  LA +M HYGIK EAEIVSGNI S +K    R  + +AI + +++LRKE+
Sbjct: 1058 AHWYKSEYDFKLAGLMDHYGIKTEAEIVSGNILSLAKSFTKR-RDAEAIALAMRSLRKEV 1116

Query: 498  RSFFETNVKALVADE---------YEMASAWYHITYHPQYWGYGDYTEKD-RSKPHFISF 349
            R +F+   K  V DE         Y  ASAWYHITYHP+YW  G Y E+D R++ HFISF
Sbjct: 1117 RGWFKE--KRSVVDEGDYSLDDDVYAKASAWYHITYHPEYW--GSYFEEDGRNRAHFISF 1172

Query: 348  PWIVHDKLLTIKRNK 304
            PW ++DKL+ IKR++
Sbjct: 1173 PWCIYDKLIHIKRHR 1187


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  258 bits (660), Expect = 2e-66
 Identities = 137/254 (53%), Positives = 177/254 (69%), Gaps = 2/254 (0%)
 Frame = -3

Query: 1038 NDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPD 859
            ND+LGII+  H VFAD EP+MA S  C  LA+LF++AVDFPKTGVPAE+PS L PKEYPD
Sbjct: 853  NDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPD 912

Query: 858  FMEKE-DKPTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYID 682
            FM+K  DK TY+S+RVIG LYR +KD A Q+ S + FTR+VA R+YD DLE   + +YID
Sbjct: 913  FMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYID 972

Query: 681  AAFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKE 502
             AF+ K  YD+ L ++M +YGIK EAEI+SG I   SK    R  + +AI + V+ALRKE
Sbjct: 973  EAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFD-RRKDAEAISIAVRALRKE 1031

Query: 501  LRSFFETNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWIVHDKL 325
             R++F+   +  + D    ASAWYH+TYHP YWG Y    ++D    HFISFPW V+D+L
Sbjct: 1032 ARTWFKR--RNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRD----HFISFPWCVYDQL 1085

Query: 324  LTIKRNKTKGSKLL 283
            + IK+ K     +L
Sbjct: 1086 IQIKKEKALNRPVL 1099


>ref|XP_006469266.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 292

 Score =  258 bits (659), Expect = 3e-66
 Identities = 135/256 (52%), Positives = 175/256 (68%), Gaps = 1/256 (0%)
 Frame = -3

Query: 1038 NDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPD 859
            ND+LGII+  HTVFAD EP  ARS+ CL LA+ F++AVDFPKTGVPAE+P  L  KEYPD
Sbjct: 30   NDSLGIIANAHTVFADREPHKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPD 89

Query: 858  FMEKEDKPTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDA 679
            FMEK DKPTY S+ VIG L+RA+KD A  +  I  FT+EVA R+YD D+E   + ++ID 
Sbjct: 90   FMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDD 149

Query: 678  AFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKEL 499
            A   K  YD  L ++M +YGIK EAEI++G+I   SK    R  + +AI M V+ALRKE 
Sbjct: 150  AIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKR-RDAEAIGMAVRALRKEA 208

Query: 498  RSFF-ETNVKALVADEYEMASAWYHITYHPQYWGYGDYTEKDRSKPHFISFPWIVHDKLL 322
            R++F E +      D Y  ASAWYH+TYHP YWG  ++     ++ HF+SFPW V+D+L+
Sbjct: 209  RAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNH---GMNRDHFLSFPWCVYDRLV 265

Query: 321  TIKRNKTKGSKLLPAL 274
             IK++KT      PAL
Sbjct: 266  EIKKDKTSIGNAFPAL 281


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  258 bits (659), Expect = 3e-66
 Identities = 135/256 (52%), Positives = 175/256 (68%), Gaps = 1/256 (0%)
 Frame = -3

Query: 1038 NDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPD 859
            ND+LGII+  HTVFAD EP  ARS+ CL LA+ F++AVDFPKTGVPAE+P  L  KEYPD
Sbjct: 870  NDSLGIIANAHTVFADREPHKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPD 929

Query: 858  FMEKEDKPTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDA 679
            FMEK DKPTY S+ VIG L+RA+KD A  +  I  FT+EVA R+YD D+E   + ++ID 
Sbjct: 930  FMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDD 989

Query: 678  AFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKEL 499
            A   K  YD  L ++M +YGIK EAEI++G+I   SK    R  + +AI M V+ALRKE 
Sbjct: 990  AIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKR-RDAEAIGMAVRALRKEA 1048

Query: 498  RSFF-ETNVKALVADEYEMASAWYHITYHPQYWGYGDYTEKDRSKPHFISFPWIVHDKLL 322
            R++F E +      D Y  ASAWYH+TYHP YWG  ++     ++ HF+SFPW V+D+L+
Sbjct: 1049 RAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNH---GMNRDHFLSFPWCVYDRLV 1105

Query: 321  TIKRNKTKGSKLLPAL 274
             IK++KT      PAL
Sbjct: 1106 EIKKDKTSIGNAFPAL 1121


>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  258 bits (659), Expect = 3e-66
 Identities = 137/254 (53%), Positives = 177/254 (69%), Gaps = 2/254 (0%)
 Frame = -3

Query: 1038 NDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPD 859
            ND+LGIIS  H VFAD EP+MA S  C  LA+L ++AVDFPKTGVPAE+PS L PKEYPD
Sbjct: 701  NDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPSQLRPKEYPD 760

Query: 858  FMEKE-DKPTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYID 682
            FM+K  DK TY+S+RVIG L+R +KD A Q+ S + FTR+VA R+YD DLE   + +YID
Sbjct: 761  FMDKPPDKTTYISERVIGKLFRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYID 820

Query: 681  AAFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKE 502
             AF+ K  YDS L ++M +YGIK EAEI+SG I   SK    R  + +AI + V+ALRKE
Sbjct: 821  EAFDYKTEYDSKLGNLMDYYGIKTEAEILSGGIMKTSKTFD-RRKDAEAISIAVRALRKE 879

Query: 501  LRSFFETNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWIVHDKL 325
             R++F+ +    + D    ASAWYH+TYHP YWG Y    ++D    HFISFPW V+D+L
Sbjct: 880  ARTWFKRHND--IDDMLPKASAWYHVTYHPTYWGCYNQGLKRD----HFISFPWCVYDQL 933

Query: 324  LTIKRNKTKGSKLL 283
            + IK+ K +   +L
Sbjct: 934  IQIKKEKARNRPVL 947


>gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tuberosum]
          Length = 1050

 Score =  257 bits (656), Expect = 6e-66
 Identities = 136/254 (53%), Positives = 177/254 (69%), Gaps = 2/254 (0%)
 Frame = -3

Query: 1038 NDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPD 859
            ND+LGIIS  H VFAD EP+MA S  C  LA+L ++AVDFPKTGVPAE+PS L PKEYPD
Sbjct: 788  NDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPSQLRPKEYPD 847

Query: 858  FMEKE-DKPTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYID 682
            FM+K  DK TY+S+RVIG L+R +KD A Q+ S + FTR+VA R+YD DLE   + +YID
Sbjct: 848  FMDKPPDKTTYISERVIGKLFRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYID 907

Query: 681  AAFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKE 502
             AF+ K  YD+ L ++M +YGIK EAEI+SG I   SK    R  + +AI + V+ALRKE
Sbjct: 908  EAFDYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKTSKTFD-RRKDAEAISIAVRALRKE 966

Query: 501  LRSFFETNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWIVHDKL 325
             R++F+   +  + D    ASAWYH+TYHP YWG Y    ++D    HFISFPW V+D+L
Sbjct: 967  ARTWFKR--RNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRD----HFISFPWCVYDQL 1020

Query: 324  LTIKRNKTKGSKLL 283
            + IK+ K +   +L
Sbjct: 1021 IQIKKEKARNRPVL 1034


>gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1021

 Score =  256 bits (655), Expect = 8e-66
 Identities = 136/254 (53%), Positives = 177/254 (69%), Gaps = 2/254 (0%)
 Frame = -3

Query: 1038 NDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPD 859
            ND+LGIIS  H VFAD EP+MA S  C  LA+L ++AVDFPKTGVPAE+PS L PKEYPD
Sbjct: 759  NDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPSQLRPKEYPD 818

Query: 858  FMEKE-DKPTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYID 682
            FM+K  DK TY+S+RVIG L+R +KD A Q+ S + FTR+VA R+YD DLE   + +YID
Sbjct: 819  FMDKPPDKTTYISERVIGKLFRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYID 878

Query: 681  AAFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKE 502
             AF+ K  YD+ L ++M +YGIK EAEI+SG I   SK    R  + +AI + V+ALRKE
Sbjct: 879  EAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFD-RRKDAEAISIAVRALRKE 937

Query: 501  LRSFFETNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWIVHDKL 325
             R++F+   +  + D    ASAWYH+TYHP YWG Y    ++D    HFISFPW V+D+L
Sbjct: 938  ARTWFKR--RNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRD----HFISFPWCVYDQL 991

Query: 324  LTIKRNKTKGSKLL 283
            + IK+ K +   +L
Sbjct: 992  IQIKKEKARNRPVL 1005


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
            tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
            tuberosum]
          Length = 1115

 Score =  255 bits (651), Expect = 2e-65
 Identities = 135/254 (53%), Positives = 176/254 (69%), Gaps = 2/254 (0%)
 Frame = -3

Query: 1038 NDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPD 859
            ND+LGII+  H VFAD EP+MA S  C  LA+L ++AVDFPKTGVPAE+P  L PKEYPD
Sbjct: 853  NDSLGIIANAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPPQLRPKEYPD 912

Query: 858  FMEKE-DKPTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYID 682
            FM+K  DK TY+S+RVIG LYR +KD A Q+ S + FTR+VA R+YD DLE   + +YID
Sbjct: 913  FMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYID 972

Query: 681  AAFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKE 502
             AF+ K  YD+ L ++M +YGIK EAEI+SG I   SK    R  + +AI + V+ALRKE
Sbjct: 973  EAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFD-RRKDAEAISIAVRALRKE 1031

Query: 501  LRSFFETNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWIVHDKL 325
             R++F+   +  + D    ASAWYH+TYHP YWG Y    ++D    HFISFPW V+D+L
Sbjct: 1032 ARTWFKR--RNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRD----HFISFPWCVYDQL 1085

Query: 324  LTIKRNKTKGSKLL 283
            + IK+ K +   +L
Sbjct: 1086 IQIKKEKARNRPVL 1099


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score =  254 bits (648), Expect = 5e-65
 Identities = 130/252 (51%), Positives = 177/252 (70%)
 Frame = -3

Query: 1038 NDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPD 859
            ND+LGII+  H VFAD EP+MA S  C  LA+LF++AVDFPKTGVPAE+PS L PKEYPD
Sbjct: 856  NDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPD 915

Query: 858  FMEKEDKPTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDA 679
            FMEK DKPTY S++VIG L++ +KD   Q+ SI++FT +VA ++YD D+    + +YID 
Sbjct: 916  FMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDVARKSYDGDMIVNGFEDYIDE 975

Query: 678  AFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKEL 499
            AF  K+ YD+ L ++M +YGIK EAEI+SG I   SK    R  + DAI + V++LRKE 
Sbjct: 976  AFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFD-RRKDADAIGVAVRSLRKEA 1034

Query: 498  RSFFETNVKALVADEYEMASAWYHITYHPQYWGYGDYTEKDRSKPHFISFPWIVHDKLLT 319
            R++F+   ++ + D    ASAWYH+TYH  YWG+  Y E    + HFISFPW ++D+L+ 
Sbjct: 1035 RTWFKR--RSDIDDMLAKASAWYHVTYHHTYWGF--YNE-GLKRDHFISFPWCIYDQLIQ 1089

Query: 318  IKRNKTKGSKLL 283
            IK+ K +   +L
Sbjct: 1090 IKKAKARKKPVL 1101


>emb|CBI26820.3| unnamed protein product [Vitis vinifera]
          Length = 919

 Score =  252 bits (644), Expect = 1e-64
 Identities = 134/257 (52%), Positives = 175/257 (68%), Gaps = 6/257 (2%)
 Frame = -3

Query: 1038 NDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPD 859
            ND+LGII+  HTVFAD E + A    C +LAKLF++AVDFPKTGVPAE+P  L  KEYPD
Sbjct: 654  NDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPD 713

Query: 858  FMEKEDKPTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDA 679
            FMEK DKPTY S+ VIG L+R +KD A  + +I SFTR+VA ++YD D+E   + +Y+  
Sbjct: 714  FMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSD 773

Query: 678  AFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKEL 499
            AF  K+ YD  L ++M +YGIK E+EI+SG+I   SK    R  + +AI + VK+LRKE 
Sbjct: 774  AFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFD-RRKDAEAIGLAVKSLRKEA 832

Query: 498  RSFF-----ETNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWIV 337
            R++F     ET+ +A   D Y  ASAWYH+TYHP YWG Y +  ++D    HF+SFPW V
Sbjct: 833  RTWFNKMGSETDSEA--DDVYAKASAWYHVTYHPDYWGCYNEGMDRD----HFLSFPWCV 886

Query: 336  HDKLLTIKRNKTKGSKL 286
            +DKL+  KR K  G  L
Sbjct: 887  YDKLIHTKRKKMSGRSL 903


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  252 bits (644), Expect = 1e-64
 Identities = 134/257 (52%), Positives = 175/257 (68%), Gaps = 6/257 (2%)
 Frame = -3

Query: 1038 NDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPD 859
            ND+LGII+  HTVFAD E + A    C +LAKLF++AVDFPKTGVPAE+P  L  KEYPD
Sbjct: 856  NDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPD 915

Query: 858  FMEKEDKPTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDA 679
            FMEK DKPTY S+ VIG L+R +KD A  + +I SFTR+VA ++YD D+E   + +Y+  
Sbjct: 916  FMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSD 975

Query: 678  AFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKEL 499
            AF  K+ YD  L ++M +YGIK E+EI+SG+I   SK    R  + +AI + VK+LRKE 
Sbjct: 976  AFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFD-RRKDAEAIGLAVKSLRKEA 1034

Query: 498  RSFF-----ETNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWIV 337
            R++F     ET+ +A   D Y  ASAWYH+TYHP YWG Y +  ++D    HF+SFPW V
Sbjct: 1035 RTWFNKMGSETDSEA--DDVYAKASAWYHVTYHPDYWGCYNEGMDRD----HFLSFPWCV 1088

Query: 336  HDKLLTIKRNKTKGSKL 286
            +DKL+  KR K  G  L
Sbjct: 1089 YDKLIHTKRKKMSGRSL 1105


>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
          Length = 654

 Score =  252 bits (644), Expect = 1e-64
 Identities = 134/257 (52%), Positives = 175/257 (68%), Gaps = 6/257 (2%)
 Frame = -3

Query: 1038 NDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPD 859
            ND+LGII+  HTVFAD E + A    C +LAKLF++AVDFPKTGVPAE+P  L  KEYPD
Sbjct: 389  NDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPD 448

Query: 858  FMEKEDKPTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDA 679
            FMEK DKPTY S+ VIG L+R +KD A  + +I SFTR+VA ++YD D+E   + +Y+  
Sbjct: 449  FMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSD 508

Query: 678  AFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKEL 499
            AF  K+ YD  L ++M +YGIK E+EI+SG+I   SK    R  + +AI + VK+LRKE 
Sbjct: 509  AFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFD-RRKDAEAIGLAVKSLRKEA 567

Query: 498  RSFF-----ETNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWIV 337
            R++F     ET+ +A   D Y  ASAWYH+TYHP YWG Y +  ++D    HF+SFPW V
Sbjct: 568  RTWFNKMGSETDSEA--DDVYAKASAWYHVTYHPDYWGCYNEGMDRD----HFLSFPWCV 621

Query: 336  HDKLLTIKRNKTKGSKL 286
            +DKL+  KR K  G  L
Sbjct: 622  YDKLIHTKRKKMSGRSL 638


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  252 bits (643), Expect = 2e-64
 Identities = 129/248 (52%), Positives = 176/248 (70%), Gaps = 1/248 (0%)
 Frame = -3

Query: 1038 NDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPD 859
            ND+LGII+  H VFAD EP+MA S  C  LA+LF++AVDFPKTGVPAE+PS L PKEYPD
Sbjct: 855  NDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPD 914

Query: 858  FMEKEDKPTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDA 679
            FMEK DKPTY S++VIG L++ +K+   Q+ SI++FTR+VA ++YD D+    + +YID 
Sbjct: 915  FMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDVARKSYDSDMIVDGFEDYIDE 974

Query: 678  AFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKEL 499
            AF  K+ YD+ L ++M +YGIK EAEI+SG I   SK    R  + +AI + V+ LRKE 
Sbjct: 975  AFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFD-RRKDAEAIGVAVRCLRKEA 1033

Query: 498  RSFFETNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWIVHDKLL 322
            R++F+   ++ + D    ASAWYH+TYH  YWG Y +  ++D    HFISFPW V+D+L+
Sbjct: 1034 RAWFKR--RSDIDDMLAKASAWYHVTYHHTYWGLYNEGLKRD----HFISFPWCVYDQLI 1087

Query: 321  TIKRNKTK 298
             IK+ K +
Sbjct: 1088 QIKKAKAR 1095


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 1119

 Score =  251 bits (641), Expect = 3e-64
 Identities = 136/263 (51%), Positives = 180/263 (68%), Gaps = 3/263 (1%)
 Frame = -3

Query: 1038 NDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPD 859
            ND+LGII+  HTVFADS+ + A S  CL LAKLF++AVDFPKTGVPAE+P  L  KEYPD
Sbjct: 855  NDSLGIIANAHTVFADSKLDKAMSHPCLQLAKLFSIAVDFPKTGVPAEIPPELYAKEYPD 914

Query: 858  FMEKEDKPTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDA 679
            FMEK DK TY+S  VIG L+R +KD A    SI+SFTR+VA + YD D+E   + +Y++ 
Sbjct: 915  FMEKPDKRTYISHNVIGQLFREVKDIAPHDSSIASFTRQVATKCYDPDMEVDGFEDYLED 974

Query: 678  AFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKEL 499
            AF  K  YD  L +++ +YGIK EAEI+SG+I + SK    R  + DAI + VK+LRKE 
Sbjct: 975  AFYHKGNYDYKLGNMLDYYGIKTEAEILSGSIMTLSKSFTKR-RDADAINVAVKSLRKEA 1033

Query: 498  RSFF---ETNVKALVADEYEMASAWYHITYHPQYWGYGDYTEKDRSKPHFISFPWIVHDK 328
            R++F   +T + +   D Y  ASAWYH+TYHP Y+G   Y E   ++ HFISFPW V DK
Sbjct: 1034 RAWFNEKDTGIDSGDDDVYAKASAWYHVTYHPNYFGL--YNE-GMNRAHFISFPWCVFDK 1090

Query: 327  LLTIKRNKTKGSKLLPALFSDLK 259
            L  IK+ K   ++L+ +L + L+
Sbjct: 1091 LGHIKKEKVNQARLISSLENRLR 1113


>emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
          Length = 775

 Score =  250 bits (638), Expect = 7e-64
 Identities = 127/237 (53%), Positives = 168/237 (70%), Gaps = 1/237 (0%)
 Frame = -3

Query: 1038 NDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPD 859
            ND LG+I+  H VFAD EP MA S  C++LA+LF++AVDFPKTGVPAE+PS L PKEYPD
Sbjct: 546  NDGLGVIANAHVVFADREPNMAMSDPCIELAQLFSIAVDFPKTGVPAEIPSQLRPKEYPD 605

Query: 858  FMEKEDKPTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDA 679
            FMEK DK TY S++VIG L+R +KD   Q+ SI++FTR+VA R+YD DLE   + +YID 
Sbjct: 606  FMEKPDKTTYHSEKVIGKLFREVKDKTTQASSITTFTRDVARRSYDTDLEVDGFEDYIDE 665

Query: 678  AFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKEL 499
            AF+ K+ YD  L ++M +YGIK EAE +SG I   SK    R  + +AI + V++LRKE 
Sbjct: 666  AFDYKSEYDKKLGNLMDYYGIKTEAETLSGGIMKASKTFD-RRRDAEAIGVAVRSLRKEA 724

Query: 498  RSFFETNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWIVHD 331
            R++F+   ++ + D    ASAWYH+ YHP YWG Y +  ++D    HFISFPW V+D
Sbjct: 725  RTWFKR--RSDIDDLLAKASAWYHVAYHPTYWGCYNEGLKRD----HFISFPWCVYD 775