BLASTX nr result
ID: Ephedra26_contig00018706
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00018706
(1059 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN65095.1| hypothetical protein VITISV_011639 [Vitis vinifera] 152 3e-43
emb|CAN61004.1| hypothetical protein VITISV_015023 [Vitis vinifera] 149 2e-42
emb|CAN76465.1| hypothetical protein VITISV_007267 [Vitis vinifera] 149 2e-42
emb|CAN75466.1| hypothetical protein VITISV_025054 [Vitis vinifera] 150 5e-42
emb|CAN73399.1| hypothetical protein VITISV_006541 [Vitis vinifera] 148 5e-42
emb|CAN82483.1| hypothetical protein VITISV_006799 [Vitis vinifera] 148 6e-42
gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana] 136 1e-41
emb|CAN69715.1| hypothetical protein VITISV_011263 [Vitis vinifera] 145 3e-41
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 137 4e-41
emb|CAN82851.1| hypothetical protein VITISV_027998 [Vitis vinifera] 146 5e-41
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 133 6e-41
gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subc... 134 1e-40
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 132 2e-40
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g... 138 2e-40
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz... 137 3e-40
gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subc... 137 3e-40
emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group] 140 4e-40
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-... 130 7e-40
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 130 7e-40
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 130 7e-40
>emb|CAN65095.1| hypothetical protein VITISV_011639 [Vitis vinifera]
Length = 1377
Score = 152 bits (383), Expect(2) = 3e-43
Identities = 96/266 (36%), Positives = 143/266 (53%), Gaps = 9/266 (3%)
Frame = +2
Query: 56 IEGFDESEIET---------SEKENILEIKETNVTRPEQNDEVPNDQDHSSQEEIIQNEP 208
+E F+ES I T ++ E+I+++ + + E +E + Q H + EP
Sbjct: 804 LESFNESPITTENHIPPESFNQPESIVDLWDKEHIQEEMEEEALSQQTHEA-------EP 856
Query: 209 YISHSNQEGDIQNEPHEDSVLEENPVQNKKIPLWAKKTFEDVNGGVFRNYEGYLTRGRKK 388
+ S G+ + DS LE N + N +P+ +K N+ Y
Sbjct: 857 GPNPSKLPGNNAPDGTVDSELE-NDILN--MPIAWRKGVRSCTQHPIGNFISY------D 907
Query: 389 K*DTYFICCVSKI*NLEGPKNIKEALSNID*KATMDNEIRMLLDKQTWELTKLPKDK*VI 568
K F S I + P+NI+EA KA +D E+R L TWE+T LP+ K I
Sbjct: 908 KLSPTFRAFTSSITEIPVPRNIQEAFKYPKWKAVVDEEVRALEKNGTWEITDLPRGKKPI 967
Query: 569 CCRWVYTIKHLPNGEIDKYKAKLEAKGFYQKEGINYKETFAPIANIRIIRMLLKLATNKR 748
C+W++TIK+ +G +D+YKA+L AKGF Q GI+Y+ETFAP+A + +R+LL LA N
Sbjct: 968 RCKWIFTIKYKADGNVDRYKARLVAKGFTQSYGIDYQETFAPVAKLNTVRVLLSLAANLD 1027
Query: 749 WDVFYLDVKSAFIHGNLEEEVYMSQP 826
W + LDVK+AF++G+LEEEVYM P
Sbjct: 1028 WSLHQLDVKNAFLNGDLEEEVYMDIP 1053
Score = 51.2 bits (121), Expect(2) = 3e-43
Identities = 25/62 (40%), Positives = 40/62 (64%)
Frame = +3
Query: 867 KKSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDKRRPIILAFHVDDIIIT 1046
+KSLYGLKQ+ + W++R T +K GF + D L+ + + + II+ + VDDII+T
Sbjct: 1069 RKSLYGLKQSPRAWFERFTKVVKGYGFVQCQSDHTLFVKHFPEGKLTIIIVY-VDDIILT 1127
Query: 1047 GE 1052
G+
Sbjct: 1128 GD 1129
>emb|CAN61004.1| hypothetical protein VITISV_015023 [Vitis vinifera]
Length = 1010
Score = 149 bits (376), Expect(2) = 2e-42
Identities = 93/266 (34%), Positives = 142/266 (53%), Gaps = 9/266 (3%)
Frame = +2
Query: 56 IEGFDESEIET---------SEKENILEIKETNVTRPEQNDEVPNDQDHSSQEEIIQNEP 208
+E F ES I T ++ E+I+++ + + E + + Q H + EP
Sbjct: 377 LESFSESPITTENHIPPESFNQPESIVDLWDKEHIQEETEERALSQQTHEA-------EP 429
Query: 209 YISHSNQEGDIQNEPHEDSVLEENPVQNKKIPLWAKKTFEDVNGGVFRNYEGYLTRGRKK 388
+ S G+ + DS LE N + N +P+ +K N+ Y
Sbjct: 430 GPNPSKLPGNNAPDGTVDSELE-NDILN--MPIAWRKGVRSCTQHPIGNFISY------D 480
Query: 389 K*DTYFICCVSKI*NLEGPKNIKEALSNID*KATMDNEIRMLLDKQTWELTKLPKDK*VI 568
K F S I ++ P+NI+EA KA +D E+R L TWE+T LP+ K +
Sbjct: 481 KLSPTFRAFTSSITEIQVPQNIQEAFKYPKWKAAVDEEVRALEKNGTWEITDLPRGKKPV 540
Query: 569 CCRWVYTIKHLPNGEIDKYKAKLEAKGFYQKEGINYKETFAPIANIRIIRMLLKLATNKR 748
C+W++T+K+ +G +D+YKA+L AKGF Q GI+Y+ETFAP+A + +R+LL LA N
Sbjct: 541 GCKWIFTVKYKADGNVDRYKARLVAKGFTQSYGIDYQETFAPVAKLNTVRVLLSLAANLD 600
Query: 749 WDVFYLDVKSAFIHGNLEEEVYMSQP 826
W + LDVK+AF++G+LEEEVYM P
Sbjct: 601 WSLHQLDVKNAFLNGDLEEEVYMDIP 626
Score = 51.2 bits (121), Expect(2) = 2e-42
Identities = 25/62 (40%), Positives = 40/62 (64%)
Frame = +3
Query: 867 KKSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDKRRPIILAFHVDDIIIT 1046
+KSLYGLKQ+ + W++R T +K GF + D L+ + + + II+ + VDDII+T
Sbjct: 642 RKSLYGLKQSPRAWFERFTKVVKGYGFVQCQSDHTLFVKHFPEGKLAIIIVY-VDDIILT 700
Query: 1047 GE 1052
G+
Sbjct: 701 GD 702
>emb|CAN76465.1| hypothetical protein VITISV_007267 [Vitis vinifera]
Length = 701
Score = 149 bits (376), Expect(2) = 2e-42
Identities = 93/266 (34%), Positives = 142/266 (53%), Gaps = 9/266 (3%)
Frame = +2
Query: 56 IEGFDESEIET---------SEKENILEIKETNVTRPEQNDEVPNDQDHSSQEEIIQNEP 208
+E F ES I T ++ E+I+++ + + E + + Q H + EP
Sbjct: 112 LESFSESPITTENHIPPESFNQPESIVDLWDKEHIQEETEERALSQQTHEA-------EP 164
Query: 209 YISHSNQEGDIQNEPHEDSVLEENPVQNKKIPLWAKKTFEDVNGGVFRNYEGYLTRGRKK 388
+ S G+ + DS LE N + N +P+ +K N+ Y
Sbjct: 165 GPNPSKLPGNNAPDGTVDSELE-NDILN--MPIAWRKGVRSCTQHPIGNFISY------D 215
Query: 389 K*DTYFICCVSKI*NLEGPKNIKEALSNID*KATMDNEIRMLLDKQTWELTKLPKDK*VI 568
K F S I ++ P+NI+EA KA +D E+R L TWE+T LP+ K +
Sbjct: 216 KLSPTFRAFTSSITEIQVPQNIQEAFKYPKWKAAVDEEVRALEKNGTWEITDLPRGKKPV 275
Query: 569 CCRWVYTIKHLPNGEIDKYKAKLEAKGFYQKEGINYKETFAPIANIRIIRMLLKLATNKR 748
C+W++T+K+ +G +D+YKA+L AKGF Q GI+Y+ETFAP+A + +R+LL LA N
Sbjct: 276 GCKWIFTVKYKADGNVDRYKARLVAKGFTQSYGIDYQETFAPVAKLNTVRVLLSLAANLD 335
Query: 749 WDVFYLDVKSAFIHGNLEEEVYMSQP 826
W + LDVK+AF++G+LEEEVYM P
Sbjct: 336 WSLHQLDVKNAFLNGDLEEEVYMDIP 361
Score = 51.2 bits (121), Expect(2) = 2e-42
Identities = 25/62 (40%), Positives = 40/62 (64%)
Frame = +3
Query: 867 KKSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDKRRPIILAFHVDDIIIT 1046
+KSLYGLKQ+ + W++R T +K GF + D L+ + + + II+ + VDDII+T
Sbjct: 377 RKSLYGLKQSPRAWFERFTKVVKGYGFVQCQSDHTLFVKHFPEGKLAIIIVY-VDDIILT 435
Query: 1047 GE 1052
G+
Sbjct: 436 GD 437
>emb|CAN75466.1| hypothetical protein VITISV_025054 [Vitis vinifera]
Length = 1576
Score = 150 bits (378), Expect(2) = 5e-42
Identities = 93/266 (34%), Positives = 143/266 (53%), Gaps = 9/266 (3%)
Frame = +2
Query: 56 IEGFDESEIET---------SEKENILEIKETNVTRPEQNDEVPNDQDHSSQEEIIQNEP 208
+E F ES I T ++ E+I+++ + + E + + Q H + EP
Sbjct: 943 LESFSESPITTENHIPPESFNQPESIVDLWDKEHIQEETEERALSQQTHEA-------EP 995
Query: 209 YISHSNQEGDIQNEPHEDSVLEENPVQNKKIPLWAKKTFEDVNGGVFRNYEGYLTRGRKK 388
+ S G+ + DS LE N + N +P+ +K + N+ Y
Sbjct: 996 GPNPSKLPGNNAPDGTVDSELE-NDILN--MPIAWRKEVKSCTQHPIGNFISY------D 1046
Query: 389 K*DTYFICCVSKI*NLEGPKNIKEALSNID*KATMDNEIRMLLDKQTWELTKLPKDK*VI 568
K F S I ++ P+NI+EA KA +D E+R L TWE+T LP+ K +
Sbjct: 1047 KLSPTFRAFTSSITEIQVPQNIQEAFKYPKWKAAVDEEVRALEKNGTWEITDLPRGKKPV 1106
Query: 569 CCRWVYTIKHLPNGEIDKYKAKLEAKGFYQKEGINYKETFAPIANIRIIRMLLKLATNKR 748
C+W++T+K+ +G +D+YKA+L AKGF Q GI+Y+ETFAP+A + +R+LL LA N
Sbjct: 1107 GCKWIFTVKYKADGNVDRYKARLVAKGFTQSYGIDYQETFAPVAKLNTVRVLLSLAANLD 1166
Query: 749 WDVFYLDVKSAFIHGNLEEEVYMSQP 826
W + LDVK+AF++G+LEEEVYM P
Sbjct: 1167 WSLHQLDVKNAFLNGDLEEEVYMDIP 1192
Score = 49.3 bits (116), Expect(2) = 5e-42
Identities = 24/62 (38%), Positives = 40/62 (64%)
Frame = +3
Query: 867 KKSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDKRRPIILAFHVDDIIIT 1046
+KSLYGLKQ+ + W++R T +K GF + D L+ + + + II+ + VD+II+T
Sbjct: 1208 RKSLYGLKQSPRAWFERFTKVVKGYGFVQCQSDHTLFVKHFPEGKLAIIIVY-VDNIILT 1266
Query: 1047 GE 1052
G+
Sbjct: 1267 GD 1268
>emb|CAN73399.1| hypothetical protein VITISV_006541 [Vitis vinifera]
Length = 834
Score = 148 bits (373), Expect(2) = 5e-42
Identities = 92/266 (34%), Positives = 142/266 (53%), Gaps = 9/266 (3%)
Frame = +2
Query: 56 IEGFDESEIET---------SEKENILEIKETNVTRPEQNDEVPNDQDHSSQEEIIQNEP 208
+E F ES I T ++ E+I+++ + + E + + Q H ++ P
Sbjct: 201 LESFSESPITTENHIPPESFNQPESIVDLWDKEHIQEETEERALSQQTHEAK-------P 253
Query: 209 YISHSNQEGDIQNEPHEDSVLEENPVQNKKIPLWAKKTFEDVNGGVFRNYEGYLTRGRKK 388
+ S G+ + DS LE N + N +P+ +K N+ Y
Sbjct: 254 GPNPSKLPGNNAPDGTXDSELE-NDILN--MPIAWRKGVRSCTQHPIGNFISY------D 304
Query: 389 K*DTYFICCVSKI*NLEGPKNIKEALSNID*KATMDNEIRMLLDKQTWELTKLPKDK*VI 568
K F S I ++ P+NI+EA KA +D E+R L TWE+T LP+ K +
Sbjct: 305 KLSPTFRAFTSSITEIQVPQNIQEAFKYPKWKAAVDEEVRALEKNGTWEITDLPRGKKPV 364
Query: 569 CCRWVYTIKHLPNGEIDKYKAKLEAKGFYQKEGINYKETFAPIANIRIIRMLLKLATNKR 748
C+W++T+K+ +G +D+YKA+L AKGF Q GI+Y+ETFAP+A + +R+LL LA N
Sbjct: 365 GCKWIFTVKYKADGNVDRYKARLVAKGFTQSYGIDYQETFAPVAKLNTVRVLLSLAANLD 424
Query: 749 WDVFYLDVKSAFIHGNLEEEVYMSQP 826
W + LDVK+AF++G+LEEEVYM P
Sbjct: 425 WSLHQLDVKNAFLNGDLEEEVYMDIP 450
Score = 51.2 bits (121), Expect(2) = 5e-42
Identities = 25/62 (40%), Positives = 40/62 (64%)
Frame = +3
Query: 867 KKSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDKRRPIILAFHVDDIIIT 1046
+KSLYGLKQ+ + W++R T +K GF + D L+ + + + II+ + VDDII+T
Sbjct: 466 RKSLYGLKQSPRAWFERFTKVVKGYGFVQCQSDHTLFVKHFPEGKLAIIIVY-VDDIILT 524
Query: 1047 GE 1052
G+
Sbjct: 525 GD 526
>emb|CAN82483.1| hypothetical protein VITISV_006799 [Vitis vinifera]
Length = 1180
Score = 148 bits (373), Expect(2) = 6e-42
Identities = 93/266 (34%), Positives = 141/266 (53%), Gaps = 9/266 (3%)
Frame = +2
Query: 56 IEGFDESEIET---------SEKENILEIKETNVTRPEQNDEVPNDQDHSSQEEIIQNEP 208
+E F ES I T ++ E+I+++ + + E + + Q H + EP
Sbjct: 547 LESFSESPITTENHIPPESFNQPESIVDLWDKEHIQEETEERXLSQQTHEA-------EP 599
Query: 209 YISHSNQEGDIQNEPHEDSVLEENPVQNKKIPLWAKKTFEDVNGGVFRNYEGYLTRGRKK 388
+ S G+ + DS LE N + N +P+ +K N+ Y
Sbjct: 600 GPNPSKLPGNNAPDGTVDSELE-NDILN--MPIAWRKGVRSCTQHPIGNFISY------D 650
Query: 389 K*DTYFICCVSKI*NLEGPKNIKEALSNID*KATMDNEIRMLLDKQTWELTKLPKDK*VI 568
K F S I ++ P+NI EA KA +D E+R L TWE+T LP+ K +
Sbjct: 651 KLSPTFRAFTSSITEIQVPQNIHEAFKYPKWKAAVDEEVRALEKNGTWEITDLPRGKKPV 710
Query: 569 CCRWVYTIKHLPNGEIDKYKAKLEAKGFYQKEGINYKETFAPIANIRIIRMLLKLATNKR 748
C+W++T+K+ +G +D+YKA+L AKGF Q GI+Y+ETFAP+A + +R+LL LA N
Sbjct: 711 GCKWIFTVKYKADGNVDRYKARLVAKGFTQSYGIDYQETFAPVAKLNTVRVLLSLAANLD 770
Query: 749 WDVFYLDVKSAFIHGNLEEEVYMSQP 826
W + LDVK+AF++G+LEEEVYM P
Sbjct: 771 WSLHQLDVKNAFLNGDLEEEVYMDIP 796
Score = 50.8 bits (120), Expect(2) = 6e-42
Identities = 25/62 (40%), Positives = 40/62 (64%)
Frame = +3
Query: 867 KKSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDKRRPIILAFHVDDIIIT 1046
+KSLYGLKQ+ + W++R T +K GF + D L+ + + + II+ + VDDII+T
Sbjct: 812 RKSLYGLKQSPRAWFERFTKVVKRYGFVQCQSDHTLFVKHFPEGKLAIIIVY-VDDIILT 870
Query: 1047 GE 1052
G+
Sbjct: 871 GD 872
>gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]
Length = 1453
Score = 136 bits (342), Expect(2) = 1e-41
Identities = 87/245 (35%), Positives = 136/245 (55%), Gaps = 4/245 (1%)
Frame = +2
Query: 167 QDHSSQEEIIQNEPYISHSNQEGDIQNEPHEDSVLEENPVQNKKIPLWAKKTFEDVNGGV 346
QD ++Q I+ + + +E D E +S+ EE QN + A+ T E+
Sbjct: 799 QDTTTQPAILTEG--VLNEEEEEDSFEETETESLNEETHTQNDE----AEVTVEEEVQQE 852
Query: 347 FRNYEGYLTRGRK--KK*DTYFICCVSKI*NLEGPKNIKEALSNID*KATMDNEIRMLLD 520
N TR + K +T + SK ++E PK+I EAL++ +++E+R +
Sbjct: 853 PENTHPMTTRSKAGIHKSNTRYALLTSKF-SVEEPKSIDEALNHPGWNNAVNDEMRTIHM 911
Query: 521 KQTWELTKLPKDK*VICCRWVYTIKHLPNGEIDKYKAKLEAKGFYQKEGINYKETFAPIA 700
TW L + +D ++ CRWV+ K P+G +DK KA+L AKGF+Q+EG++Y ETF+P+
Sbjct: 912 LHTWSLVQPTEDMNILGCRWVFKTKLKPDGSVDKLKARLVAKGFHQEEGLDYLETFSPVV 971
Query: 701 NIRIIRMLLKLATNKRWDVFYLDVKSAFIHGNLEEEVYMSQPP*Y--NEKSYLV*KLKKI 874
IR++L +AT K W++ LDV +AF+HG L+E VYM QPP + EK V +L K
Sbjct: 972 RTATIRLVLDVATAKGWNIKQLDVSNAFLHGELKEPVYMLQPPGFVDQEKPSYVCRLTKA 1031
Query: 875 IIWFK 889
+ K
Sbjct: 1032 LYGLK 1036
Score = 62.0 bits (149), Expect(2) = 1e-41
Identities = 28/62 (45%), Positives = 43/62 (69%)
Frame = +3
Query: 870 KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDKRRPIILAFHVDDIIITG 1049
K+LYGLKQA + W+ ++++L D GF SK DP+L+ +K K ++L +VDDI++TG
Sbjct: 1030 KALYGLKQAPRAWFDTISNYLLDFGFSCSKSDPSLFTYHKNGK--TLVLLLYVDDILLTG 1087
Query: 1050 ED 1055
D
Sbjct: 1088 SD 1089
>emb|CAN69715.1| hypothetical protein VITISV_011263 [Vitis vinifera]
Length = 1040
Score = 145 bits (366), Expect(2) = 3e-41
Identities = 87/246 (35%), Positives = 136/246 (55%)
Frame = +2
Query: 89 SEKENILEIKETNVTRPEQNDEVPNDQDHSSQEEIIQNEPYISHSNQEGDIQNEPHEDSV 268
++ E+I+++ + + E + + Q H + EP + S G+ + DS
Sbjct: 427 NQPESIVDLWDKEHIQEEXEERALSQQTHEA-------EPGPNPSKLPGNNAPDRTVDSE 479
Query: 269 LEENPVQNKKIPLWAKKTFEDVNGGVFRNYEGYLTRGRKKK*DTYFICCVSKI*NLEGPK 448
LE N + N +P+ +K N+ Y K F S I +++ P+
Sbjct: 480 LE-NDILN--MPIAWRKGVRSCTQHPIGNFISY------DKLSPTFXAFTSSITDIQVPQ 530
Query: 449 NIKEALSNID*KATMDNEIRMLLDKQTWELTKLPKDK*VICCRWVYTIKHLPNGEIDKYK 628
NI+EA KA ++ E+R L TWE+T LP+ K + C+WV+T+K+ +G +D+YK
Sbjct: 531 NIQEAFKYPKWKAAVNEEVRALEKNGTWEITDLPRGKKPVGCKWVFTVKYKADGNVDRYK 590
Query: 629 AKLEAKGFYQKEGINYKETFAPIANIRIIRMLLKLATNKRWDVFYLDVKSAFIHGNLEEE 808
A+L AKGF Q GI+Y+ETFAP+A + +R+LL LA N W + LDVK+AF++G+LEEE
Sbjct: 591 ARLVAKGFTQSYGIDYQETFAPVAKLNTVRVLLSLAANLDWSLHQLDVKNAFLNGDLEEE 650
Query: 809 VYMSQP 826
VYM P
Sbjct: 651 VYMDIP 656
Score = 51.2 bits (121), Expect(2) = 3e-41
Identities = 25/62 (40%), Positives = 39/62 (62%)
Frame = +3
Query: 867 KKSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDKRRPIILAFHVDDIIIT 1046
+KSLYGLKQ+ + W++R T +K GF + D L ++ K + I+ +VDDII+T
Sbjct: 672 RKSLYGLKQSPRAWFERFTKVVKGYGFVQCQSDHTL-FVKHFPKGKLAIIIVYVDDIILT 730
Query: 1047 GE 1052
G+
Sbjct: 731 GD 732
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 137 bits (346), Expect(2) = 4e-41
Identities = 68/151 (45%), Positives = 100/151 (66%), Gaps = 2/151 (1%)
Frame = +2
Query: 443 PKNIKEALSNID*KATMDNEIRMLLDKQTWELTKLPKDK*VICCRWVYTIKHLPNGEIDK 622
PKN+ +AL N + K MD E L++ +TW L + + VI C+WVY IK +G +D+
Sbjct: 939 PKNLTDALQNTNWKKAMDIEYEALMNNKTWHLVPPKQGRNVIDCKWVYKIKRKQDGSLDR 998
Query: 623 YKAKLEAKGFYQKEGINYKETFAPIANIRIIRMLLKLATNKRWDVFYLDVKSAFIHGNLE 802
YKA+L AKGF Q+ GI+Y++TF+P+ IR++L +A ++ W + LDV++AF+HG LE
Sbjct: 999 YKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSIAVSRGWCMRQLDVQNAFLHGFLE 1058
Query: 803 EEVYMSQPP*YNEKSY--LV*KLKKIIIWFK 889
EEVYM QPP Y ++S+ V KL K + K
Sbjct: 1059 EEVYMKQPPGYEDESFPGYVCKLDKALYGLK 1089
Score = 58.5 bits (140), Expect(2) = 4e-41
Identities = 30/59 (50%), Positives = 40/59 (67%)
Frame = +3
Query: 870 KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDKRRPIILAFHVDDIIIT 1046
K+LYGLKQA + WY RL+ L D GF+ SK D +L++ NKG I + +VDDII+T
Sbjct: 1083 KALYGLKQAPRAWYSRLSKKLYDLGFQGSKGDTSLFFYNKGG--LIIFVLIYVDDIIVT 1139
>emb|CAN82851.1| hypothetical protein VITISV_027998 [Vitis vinifera]
Length = 1239
Score = 146 bits (369), Expect(2) = 5e-41
Identities = 92/266 (34%), Positives = 139/266 (52%), Gaps = 9/266 (3%)
Frame = +2
Query: 56 IEGFDESEIET---------SEKENILEIKETNVTRPEQNDEVPNDQDHSSQEEIIQNEP 208
+E F ES I T ++ E+I+++ + + E + Q H + EP
Sbjct: 622 LESFSESPITTENHIPPESFNQPESIVDLWDKEHIQEETEXRALSQQTHEA-------EP 674
Query: 209 YISHSNQEGDIQNEPHEDSVLEENPVQNKKIPLWAKKTFEDVNGGVFRNYEGYLTRGRKK 388
+ S G+ + DS LE N + N +P+ +K N+ Y
Sbjct: 675 GPNPSKLPGNNAPDGTXDSELE-NDILN--MPIAXRKGVRSCTQHPIGNFISY------D 725
Query: 389 K*DTYFICCVSKI*NLEGPKNIKEALSNID*KATMDNEIRMLLDKQTWELTKLPKDK*VI 568
K F S I ++ P NI+EA KA +D E+R L TWE+T LP+ K +
Sbjct: 726 KLSPTFRAFTSSITEIQVPXNIQEAFKYPKWKAAVDEEVRALEKNGTWEITDLPRGKKPV 785
Query: 569 CCRWVYTIKHLPNGEIDKYKAKLEAKGFYQKEGINYKETFAPIANIRIIRMLLKLATNKR 748
C+W++T+K+ +G +D+YKA+L AKGF Q GI+Y+ETFAP+A + +R+LL LA N
Sbjct: 786 GCKWIFTVKYKADGNVDRYKARLVAKGFTQSYGIDYQETFAPVAKLNTVRVLLSLAANLD 845
Query: 749 WDVFYLDVKSAFIHGNLEEEVYMSQP 826
W + LDVK+ F++G+LEEEVYM P
Sbjct: 846 WSLHQLDVKNXFLNGDLEEEVYMDIP 871
Score = 49.3 bits (116), Expect(2) = 5e-41
Identities = 24/62 (38%), Positives = 39/62 (62%)
Frame = +3
Query: 867 KKSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDKRRPIILAFHVDDIIIT 1046
+KSLYG KQ+ + W++R T +K GF + D L+ + + + II+ + VDDII+T
Sbjct: 887 RKSLYGXKQSPRAWFERFTKVVKGYGFVQCQSDHTLFVKHFPEGKLAIIIVY-VDDIILT 945
Query: 1047 GE 1052
G+
Sbjct: 946 GD 947
>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108706314|gb|ABF94109.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1247
Score = 133 bits (335), Expect(2) = 6e-41
Identities = 68/151 (45%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Frame = +2
Query: 443 PKNIKEALSNID*KATMDNEIRMLLDKQTWELTKLPKDK*VICCRWVYTIKHLPNGEIDK 622
P+N+ +AL + + K MD E L + +TW L K + VI C+WVY IK +G +D+
Sbjct: 739 PENLDDALKDNNWKKAMDAEFMALQNNKTWHLVPPQKGRNVIDCKWVYKIKRKQDGSLDR 798
Query: 623 YKAKLEAKGFYQKEGINYKETFAPIANIRIIRMLLKLATNKRWDVFYLDVKSAFIHGNLE 802
YKA+L AKGF Q+ GI+Y++TF+P+ IR++L +A +K W + LDV++AF+HG LE
Sbjct: 799 YKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSKGWCMRQLDVQNAFLHGVLE 858
Query: 803 EEVYMSQPP*YNEKSY--LV*KLKKIIIWFK 889
EEVYM QPP Y + S V KL K + K
Sbjct: 859 EEVYMKQPPGYEDSSLPGYVCKLDKALYGLK 889
Score = 62.0 bits (149), Expect(2) = 6e-41
Identities = 31/59 (52%), Positives = 41/59 (69%)
Frame = +3
Query: 870 KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDKRRPIILAFHVDDIIIT 1046
K+LYGLKQA + WY RL+ L D GF+ SK D +L++ NKGD I + +VDDII+T
Sbjct: 883 KALYGLKQAPRAWYSRLSKKLYDMGFQGSKADTSLFFYNKGD--LIIFVLIYVDDIIVT 939
>gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1202
Score = 134 bits (336), Expect(2) = 1e-40
Identities = 63/149 (42%), Positives = 97/149 (65%)
Frame = +2
Query: 443 PKNIKEALSNID*KATMDNEIRMLLDKQTWELTKLPKDK*VICCRWVYTIKHLPNGEIDK 622
P+ + EAL + + K MD+E + L+ +TW L K + +I C+WVY +K +G +D+
Sbjct: 786 PQTLHEALGDKNWKEAMDSEYQALMKNKTWHLVPSKKGQNIIDCKWVYKVKQKADGSLDR 845
Query: 623 YKAKLEAKGFYQKEGINYKETFAPIANIRIIRMLLKLATNKRWDVFYLDVKSAFIHGNLE 802
YKA+L AKGF Q+ GI+Y++TF+P+ IR +L +A ++ W + LDV++AF+HG LE
Sbjct: 846 YKARLVAKGFKQRYGIDYEDTFSPVVKAATIRTILSIAISRGWTLRQLDVQNAFLHGVLE 905
Query: 803 EEVYMSQPP*YNEKSYLV*KLKKIIIWFK 889
E+V+M QPP Y +K V KL K + K
Sbjct: 906 EDVFMRQPPGYEQKDGYVCKLDKALYGLK 934
Score = 60.8 bits (146), Expect(2) = 1e-40
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = +3
Query: 870 KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDKRRPIILAFHVDDIII 1043
K+LYGLKQA + WY RL++ L + GFK+SK D +L++ +KGD I + +VDDII+
Sbjct: 928 KALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDV--TIFMLVYVDDIIV 983
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 132 bits (332), Expect(2) = 2e-40
Identities = 62/135 (45%), Positives = 90/135 (66%)
Frame = +2
Query: 443 PKNIKEALSNID*KATMDNEIRMLLDKQTWELTKLPKDK*VICCRWVYTIKHLPNGEIDK 622
P+N+++AL N + K MD E L+ TW L + + VI C+WVY IK +G +D+
Sbjct: 923 PENLQDALQNNNWKCAMDAEYMALIKNNTWHLVPPQQGRNVIDCKWVYKIKRKQDGSLDR 982
Query: 623 YKAKLEAKGFYQKEGINYKETFAPIANIRIIRMLLKLATNKRWDVFYLDVKSAFIHGNLE 802
YKA+L AKGF Q+ GI+Y++TF+P+ IR++L +A ++ W + LDV++AF+HG LE
Sbjct: 983 YKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWCLRQLDVQNAFLHGVLE 1042
Query: 803 EEVYMSQPP*YNEKS 847
EEVYM QPP Y S
Sbjct: 1043 EEVYMKQPPGYENPS 1057
Score = 61.2 bits (147), Expect(2) = 2e-40
Identities = 31/58 (53%), Positives = 39/58 (67%)
Frame = +3
Query: 870 KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDKRRPIILAFHVDDIII 1043
K+LYGLKQA + WY RL+ L D GFK SK D +L++ NKG I L +VDDII+
Sbjct: 1067 KALYGLKQAPRAWYSRLSGKLHDLGFKGSKADTSLFFYNKGS--LTIFLLIYVDDIIV 1122
>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
Japonica Group]
Length = 821
Score = 138 bits (348), Expect(2) = 2e-40
Identities = 69/151 (45%), Positives = 100/151 (66%), Gaps = 2/151 (1%)
Frame = +2
Query: 443 PKNIKEALSNID*KATMDNEIRMLLDKQTWELTKLPKDK*VICCRWVYTIKHLPNGEIDK 622
P++++EA++N K MD E L++ +TW L K + VI C+WVY +K +G +D+
Sbjct: 307 PQSLEEAVNNKHWKEAMDAEYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDR 366
Query: 623 YKAKLEAKGFYQKEGINYKETFAPIANIRIIRMLLKLATNKRWDVFYLDVKSAFIHGNLE 802
YKA+L AKGF Q+ GI+Y++TF+P+ IR++L LA ++ W + LDVK+AF+HG LE
Sbjct: 367 YKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLE 426
Query: 803 EEVYMSQPP*YNEKSY--LV*KLKKIIIWFK 889
EEVYM QPP Y +KS V KL K + K
Sbjct: 427 EEVYMEQPPGYEKKSMPNYVCKLDKALYGLK 457
Score = 55.1 bits (131), Expect(2) = 2e-40
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +3
Query: 870 KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDKRRPIILAFHVDDIII 1043
K+LYGLKQA + WY RL++ L + GF SK D +L++ KG + I L +VDDII+
Sbjct: 451 KALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKG--QVSIFLLIYVDDIIM 506
>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
Group]
Length = 1399
Score = 137 bits (345), Expect(2) = 3e-40
Identities = 69/150 (46%), Positives = 99/150 (66%), Gaps = 2/150 (1%)
Frame = +2
Query: 446 KNIKEALSNID*KATMDNEIRMLLDKQTWELTKLPKDK*VICCRWVYTIKHLPNGEIDKY 625
K+++EA++N K MD E L++ +TW L K + VI C+WVY +K +G +D+Y
Sbjct: 886 KSLEEAVNNKHWKEAMDAEYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDRY 945
Query: 626 KAKLEAKGFYQKEGINYKETFAPIANIRIIRMLLKLATNKRWDVFYLDVKSAFIHGNLEE 805
KA+L AKGF Q+ GI+Y++TF+P+ IR++L LA ++ W + LDVK+AF+HG LEE
Sbjct: 946 KARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEE 1005
Query: 806 EVYMSQPP*YNEKSY--LV*KLKKIIIWFK 889
EVYM QPP Y +KS V KL K + K
Sbjct: 1006 EVYMKQPPGYEKKSMPNYVCKLDKALYGLK 1035
Score = 55.8 bits (133), Expect(2) = 3e-40
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +3
Query: 870 KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDKRRPIILAFHVDDIII 1043
K+LYGLKQA + WY RL++ L + GF SK D +L++ KG + I L +VDDII+
Sbjct: 1029 KALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKG--QVSIFLLIYVDDIIV 1084
>gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1241
Score = 137 bits (345), Expect(2) = 3e-40
Identities = 69/150 (46%), Positives = 99/150 (66%), Gaps = 2/150 (1%)
Frame = +2
Query: 446 KNIKEALSNID*KATMDNEIRMLLDKQTWELTKLPKDK*VICCRWVYTIKHLPNGEIDKY 625
K+++EA++N K MD E L++ +TW L K + VI C+WVY +K +G +D+Y
Sbjct: 832 KSLEEAVNNKHWKEAMDAEYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDRY 891
Query: 626 KAKLEAKGFYQKEGINYKETFAPIANIRIIRMLLKLATNKRWDVFYLDVKSAFIHGNLEE 805
KA+L AKGF Q+ GI+Y++TF+P+ IR++L LA ++ W + LDVK+AF+HG LEE
Sbjct: 892 KARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEE 951
Query: 806 EVYMSQPP*YNEKSY--LV*KLKKIIIWFK 889
EVYM QPP Y +KS V KL K + K
Sbjct: 952 EVYMKQPPGYEKKSMPNYVCKLDKALYGLK 981
Score = 55.8 bits (133), Expect(2) = 3e-40
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +3
Query: 870 KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDKRRPIILAFHVDDIII 1043
K+LYGLKQA + WY RL++ L + GF SK D +L++ KG + I L +VDDII+
Sbjct: 975 KALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKG--QVSIFLLIYVDDIIV 1030
>emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]
Length = 1087
Score = 140 bits (353), Expect(2) = 4e-40
Identities = 72/151 (47%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Frame = +2
Query: 443 PKNIKEALSNID*KATMDNEIRMLLDKQTWELTKLPKDK*VICCRWVYTIKHLPNGEIDK 622
P +AL++ + K MD E L+ TW L P K +I C+WV+ IK +G ID+
Sbjct: 638 PTCFDDALADENWKKAMDEEYNALIKNNTWHLVPAPIGKYIIDCKWVFKIKRKSDGTIDR 697
Query: 623 YKAKLEAKGFYQKEGINYKETFAPIANIRIIRMLLKLATNKRWDVFYLDVKSAFIHGNLE 802
YKA+L AKGF Q+ GI+Y++TF+P+ I IR++L LA +K W + LDVK+AF+HG LE
Sbjct: 698 YKARLVAKGFKQRYGIDYEDTFSPVVKISTIRLVLSLAVSKGWSIRQLDVKNAFLHGILE 757
Query: 803 EEVYMSQPP*YNEK--SYLV*KLKKIIIWFK 889
EEVYM QPP Y +K SY V KL K + K
Sbjct: 758 EEVYMKQPPGYVDKSSSYYVCKLDKALYGLK 788
Score = 52.4 bits (124), Expect(2) = 4e-40
Identities = 28/58 (48%), Positives = 35/58 (60%)
Frame = +3
Query: 870 KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDKRRPIILAFHVDDIII 1043
K+LYGLKQA + WY RL L GF SK D +L++ KGD I +VDDII+
Sbjct: 782 KALYGLKQAPRAWYYRLYDKLCQLGFSASKADTSLFFYRKGDV--VIYFLVYVDDIIV 837
>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
Length = 1621
Score = 130 bits (328), Expect(2) = 7e-40
Identities = 67/151 (44%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Frame = +2
Query: 443 PKNIKEALSNID*KATMDNEIRMLLDKQTWELTKLPKDK*VICCRWVYTIKHLPNGEIDK 622
P N EAL + + K MD+E L+ +TW L + + +I C+WVY IK +G +D+
Sbjct: 667 PTNDLEALKDKNWKLAMDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDR 726
Query: 623 YKAKLEAKGFYQKEGINYKETFAPIANIRIIRMLLKLATNKRWDVFYLDVKSAFIHGNLE 802
YKA+L AKGF Q+ GI+Y++TF+P+ IR++L LA +K W + LDV++AF+HG LE
Sbjct: 727 YKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLE 786
Query: 803 EEVYMSQPP*YNE--KSYLV*KLKKIIIWFK 889
EEVYM QPP + + K + V KL K + K
Sbjct: 787 EEVYMLQPPGFEDPTKPHHVCKLDKALYGLK 817
Score = 61.2 bits (147), Expect(2) = 7e-40
Identities = 30/58 (51%), Positives = 42/58 (72%)
Frame = +3
Query: 870 KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDKRRPIILAFHVDDIII 1043
K+LYGLKQA + W+ RL+ L D GFK SK D +L++LNKGD +++ +VDDII+
Sbjct: 811 KALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGDITMFVLV--YVDDIIV 866
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 130 bits (328), Expect(2) = 7e-40
Identities = 67/151 (44%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Frame = +2
Query: 443 PKNIKEALSNID*KATMDNEIRMLLDKQTWELTKLPKDK*VICCRWVYTIKHLPNGEIDK 622
P N EAL + + K MD+E L+ +TW L + + +I C+WVY IK +G +D+
Sbjct: 938 PTNDLEALKDKNWKLAMDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDR 997
Query: 623 YKAKLEAKGFYQKEGINYKETFAPIANIRIIRMLLKLATNKRWDVFYLDVKSAFIHGNLE 802
YKA+L AKGF Q+ GI+Y++TF+P+ IR++L LA +K W + LDV++AF+HG LE
Sbjct: 998 YKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLE 1057
Query: 803 EEVYMSQPP*YNE--KSYLV*KLKKIIIWFK 889
EEVYM QPP + + K + V KL K + K
Sbjct: 1058 EEVYMLQPPGFEDPTKPHHVCKLDKALYGLK 1088
Score = 61.2 bits (147), Expect(2) = 7e-40
Identities = 30/58 (51%), Positives = 42/58 (72%)
Frame = +3
Query: 870 KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDKRRPIILAFHVDDIII 1043
K+LYGLKQA + W+ RL+ L D GFK SK D +L++LNKGD +++ +VDDII+
Sbjct: 1082 KALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGDITMFVLV--YVDDIIV 1137
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 130 bits (328), Expect(2) = 7e-40
Identities = 67/151 (44%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Frame = +2
Query: 443 PKNIKEALSNID*KATMDNEIRMLLDKQTWELTKLPKDK*VICCRWVYTIKHLPNGEIDK 622
P N EAL + + K MD+E L+ +TW L + + +I C+WVY IK +G +D+
Sbjct: 945 PTNDLEALKDKNWKLAMDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDR 1004
Query: 623 YKAKLEAKGFYQKEGINYKETFAPIANIRIIRMLLKLATNKRWDVFYLDVKSAFIHGNLE 802
YKA+L AKGF Q+ GI+Y++TF+P+ IR++L LA +K W + LDV++AF+HG LE
Sbjct: 1005 YKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLE 1064
Query: 803 EEVYMSQPP*YNE--KSYLV*KLKKIIIWFK 889
EEVYM QPP + + K + V KL K + K
Sbjct: 1065 EEVYMLQPPGFEDPTKPHHVCKLDKALYGLK 1095
Score = 61.2 bits (147), Expect(2) = 7e-40
Identities = 30/58 (51%), Positives = 42/58 (72%)
Frame = +3
Query: 870 KSLYGLKQASKTWYKRLTSFLKDKGFKTSKQDPNLWYLNKGDKRRPIILAFHVDDIII 1043
K+LYGLKQA + W+ RL+ L D GFK SK D +L++LNKGD +++ +VDDII+
Sbjct: 1089 KALYGLKQAPRAWFSRLSKKLMDLGFKGSKPDTSLFFLNKGDITMFVLV--YVDDIIV 1144