BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00018653
         (1123 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADE76416.1| unknown [Picea sitchensis]                             311   4e-82
dbj|BAD45865.1| pseudouridylate synthase-like [Oryza sativa Japo...   269   1e-69
gb|EAZ01977.1| hypothetical protein OsI_24011 [Oryza sativa Indi...   269   1e-69
gb|EMT12212.1| Protein kinase APK1B, chloroplastic [Aegilops tau...   265   2e-68
ref|XP_003630601.1| tRNA pseudouridine synthase A [Medicago trun...   265   3e-68
ref|XP_006850975.1| hypothetical protein AMTR_s00025p00208060 [A...   263   1e-67
ref|XP_006372225.1| tRNA pseudouridine synthase family protein [...   260   6e-67
ref|XP_006372224.1| hypothetical protein POPTR_0018s14400g [Popu...   260   6e-67
ref|XP_002331405.1| predicted protein [Populus trichocarpa]           260   6e-67
gb|AFK45334.1| unknown [Medicago truncatula]                          260   8e-67
gb|EMJ23926.1| hypothetical protein PRUPE_ppa006478mg [Prunus pe...   259   2e-66
gb|EOY32188.1| Pseudouridine synthase isoform 3 [Theobroma cacao]     258   2e-66
gb|EOY32186.1| Pseudouridine synthase isoform 1 [Theobroma cacao]     258   2e-66
ref|XP_004965639.1| PREDICTED: uncharacterized protein LOC101778...   258   3e-66
gb|EOY32187.1| Pseudouridine synthase isoform 2 [Theobroma cacao]     258   3e-66
ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus ...   258   3e-66
gb|EXC12817.1| tRNA pseudouridine synthase A [Morus notabilis]        258   4e-66
ref|XP_004503558.1| PREDICTED: tRNA pseudouridine synthase A-lik...   258   4e-66
ref|XP_006656336.1| PREDICTED: tRNA pseudouridine synthase A, mi...   257   7e-66
ref|XP_002438801.1| hypothetical protein SORBIDRAFT_10g026490 [S...   257   7e-66

>gb|ADE76416.1| unknown [Picea sitchensis]
          Length = 448

 Score =  311 bits (796), Expect = 4e-82
 Identities = 167/287 (58%), Positives = 199/287 (69%), Gaps = 21/287 (7%)
 Frame = -2

Query: 1122 KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 943
            KK +ELEAK   +EAA++VAGRTDKGVSA  QVCSFYTWRKD +  ++E+EINA A   L
Sbjct: 164  KKAQELEAKKASVEAAVAVAGRTDKGVSAFQQVCSFYTWRKDTSLEDIESEINAAALGKL 223

Query: 942  KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEG-------------DGMC--------N 826
            KV S+ EV REFHPNFSAKWRRYLYILPL +GEG             D +C        +
Sbjct: 224  KVVSISEVSREFHPNFSAKWRRYLYILPLKDGEGNKTVVDGGSPVTYDSLCLADEGGNQS 283

Query: 825  STKEILKMEKVSATAESECKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSS 646
            +   ++ ME ++ +A  + +   KP+NF+V  VNQ LQQLEG+ LSY+IFARDTQASRS 
Sbjct: 284  TDMNVINMEAMNISATGKHQASVKPHNFNVDTVNQLLQQLEGQSLSYRIFARDTQASRSR 343

Query: 645  GPATECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXX 466
            GPATEC M+HARAAVATLP +G+    + + VMCVELVANRFLRKM              
Sbjct: 344  GPATECFMHHARAAVATLPYMGQDHTSKGRTVMCVELVANRFLRKMVRVLVATAVREAAA 403

Query: 465  XADPNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDINNENSIFLI 325
             A P+  L LM ATCRRASAPPAPP+GLCLVD+GY DIN EN  FLI
Sbjct: 404  GATPDNLLKLMHATCRRASAPPAPPEGLCLVDIGYTDINQEN--FLI 448


>dbj|BAD45865.1| pseudouridylate synthase-like [Oryza sativa Japonica Group]
          Length = 495

 Score =  269 bits (688), Expect = 1e-69
 Identities = 144/261 (55%), Positives = 176/261 (67%), Gaps = 1/261 (0%)
 Frame = -2

Query: 1122 KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 943
            KK K+LEA+ +P+E    VAGRTDKGV+AL QVCSFYTWRKDV + +++  IN  A + L
Sbjct: 161  KKAKQLEARSLPLEGCAVVAGRTDKGVTALQQVCSFYTWRKDVKSSDIKDAINKAAPDKL 220

Query: 942  KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGMCNSTKEILKMEKVSATAES-ECK 766
            +   V +V REFHPNF+AKWRRYLYI PL E          K I   E+ + T E  EC 
Sbjct: 221  RPLHVSQVSREFHPNFAAKWRRYLYIFPLDE--------DVKLISGEEQSAKTVEGPECN 272

Query: 765  QLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTMYHARAAVATLPC 586
               KP +FDV  V++ ++QLEG+ LSYK+FARDTQASRS GP TEC M+H+RAAVA L  
Sbjct: 273  --IKPQSFDVGKVDKIIRQLEGKSLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHT 330

Query: 585  IGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEATCRRASA 406
              ++    T   +C+ELVANRFLRKM               A+ +  LNLMEATCRRA+A
Sbjct: 331  ADENCEEGTTRAICIELVANRFLRKMVRVLVATAIREAAAGAEEDALLNLMEATCRRATA 390

Query: 405  PPAPPDGLCLVDVGYEDINNE 343
            PPAPPDGLCLVDVGYED N +
Sbjct: 391  PPAPPDGLCLVDVGYEDFNRQ 411


>gb|EAZ01977.1| hypothetical protein OsI_24011 [Oryza sativa Indica Group]
            gi|125598125|gb|EAZ37905.1| hypothetical protein
            OsJ_22255 [Oryza sativa Japonica Group]
          Length = 417

 Score =  269 bits (688), Expect = 1e-69
 Identities = 144/261 (55%), Positives = 176/261 (67%), Gaps = 1/261 (0%)
 Frame = -2

Query: 1122 KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 943
            KK K+LEA+ +P+E    VAGRTDKGV+AL QVCSFYTWRKDV + +++  IN  A + L
Sbjct: 161  KKAKQLEARSLPLEGCAVVAGRTDKGVTALQQVCSFYTWRKDVKSSDIKDAINKAAPDKL 220

Query: 942  KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGMCNSTKEILKMEKVSATAES-ECK 766
            +   V +V REFHPNF+AKWRRYLYI PL E          K I   E+ + T E  EC 
Sbjct: 221  RPLHVSQVSREFHPNFAAKWRRYLYIFPLDE--------DVKLISGEEQSAKTVEGPECN 272

Query: 765  QLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTMYHARAAVATLPC 586
               KP +FDV  V++ ++QLEG+ LSYK+FARDTQASRS GP TEC M+H+RAAVA L  
Sbjct: 273  --IKPQSFDVGKVDKIIRQLEGKSLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHT 330

Query: 585  IGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEATCRRASA 406
              ++    T   +C+ELVANRFLRKM               A+ +  LNLMEATCRRA+A
Sbjct: 331  ADENCEEGTTRAICIELVANRFLRKMVRVLVATAIREAAAGAEEDALLNLMEATCRRATA 390

Query: 405  PPAPPDGLCLVDVGYEDINNE 343
            PPAPPDGLCLVDVGYED N +
Sbjct: 391  PPAPPDGLCLVDVGYEDFNRQ 411


>gb|EMT12212.1| Protein kinase APK1B, chloroplastic [Aegilops tauschii]
          Length = 914

 Score =  265 bits (678), Expect = 2e-68
 Identities = 148/267 (55%), Positives = 181/267 (67%)
 Frame = -2

Query: 1122 KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 943
            +K K+L+ + +PIE   +VAGRTDKGV+AL QVCSFYTWRKDV   +++  IN  A + +
Sbjct: 660  RKAKQLQERSLPIEGCATVAGRTDKGVTALQQVCSFYTWRKDVQPGDIKDTINEAAPDKI 719

Query: 942  KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGMCNSTKEILKMEKVSATAESECKQ 763
            K   V EV REFHPNFSAKWRRYLYI PL     DG   S  E    ++ S+T   E  +
Sbjct: 720  KSLVVSEVSREFHPNFSAKWRRYLYIFPL-----DGDATSISE----DEQSSTI-LENPE 769

Query: 762  LNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTMYHARAAVATLPCI 583
            L  P +FDVA V++ ++QLEG+ LSYKIFARDTQASRS GPATEC MYH+RAAV  L   
Sbjct: 770  LKAPQSFDVAKVDKIIRQLEGKMLSYKIFARDTQASRSDGPATECFMYHSRAAVTKLYSA 829

Query: 582  GKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEATCRRASAP 403
             ++    T  VMCVELVANRFLRKM               AD +  LNLM+ATCRRA+AP
Sbjct: 830  DENCKEGT-TVMCVELVANRFLRKMVRVLVATTIREAAAGADEDALLNLMDATCRRATAP 888

Query: 402  PAPPDGLCLVDVGYEDINNENSIFLIN 322
            PAP +GLCLVDVGYED  +E   F+++
Sbjct: 889  PAPAEGLCLVDVGYEDF-DEQRCFIVD 914


>ref|XP_003630601.1| tRNA pseudouridine synthase A [Medicago truncatula]
            gi|355524623|gb|AET05077.1| tRNA pseudouridine synthase A
            [Medicago truncatula]
          Length = 400

 Score =  265 bits (676), Expect = 3e-68
 Identities = 141/268 (52%), Positives = 176/268 (65%), Gaps = 4/268 (1%)
 Frame = -2

Query: 1119 KVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLK 940
            K + L+ KG+PI+   +VAGRTDKGV+AL QVCSFYTW+KD+   E+E  IN  A   L+
Sbjct: 134  KTQLLKDKGLPIQGCAAVAGRTDKGVTALQQVCSFYTWKKDIKPREIEDAINDAAPGKLR 193

Query: 939  VASVYEVPREFHPNFSAKWRRYLYILPLHEG----EGDGMCNSTKEILKMEKVSATAESE 772
            V SVYEV R FHPNFSAKWRRYLYI PL +G    +  G   S    +  E   + ++ E
Sbjct: 194  VVSVYEVSRAFHPNFSAKWRRYLYIFPLTDGQDKDQSGGNGESCDSFIYNEICDSDSKDE 253

Query: 771  CKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTMYHARAAVATL 592
             ++ NK Y F V  VN+ LQ+LEG+ LSYK+FARDT+ASR+ GP TEC ++HARA  A L
Sbjct: 254  LEKENKSYVFGVRKVNRLLQKLEGKMLSYKMFARDTKASRNDGPPTECFVHHARAMEAKL 313

Query: 591  PCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEATCRRA 412
            P     +G  T+ VMC+ELVANRFLRKM               A+ +  L LM+ATCRRA
Sbjct: 314  PI--TENGEETR-VMCIELVANRFLRKMVRVLVATTIREAAAGAEDDALLKLMDATCRRA 370

Query: 411  SAPPAPPDGLCLVDVGYEDINNENSIFL 328
            +APPAPPDGLCLVDVGY +   E    +
Sbjct: 371  TAPPAPPDGLCLVDVGYAEFEREKCFIM 398


>ref|XP_006850975.1| hypothetical protein AMTR_s00025p00208060 [Amborella trichopoda]
            gi|548854646|gb|ERN12556.1| hypothetical protein
            AMTR_s00025p00208060 [Amborella trichopoda]
          Length = 371

 Score =  263 bits (671), Expect = 1e-67
 Identities = 147/280 (52%), Positives = 176/280 (62%), Gaps = 18/280 (6%)
 Frame = -2

Query: 1122 KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 943
            KK ++L  K +P+E   +VAGRTDKGVSAL QVCSFYTWR DV   E+E  IN +A   L
Sbjct: 91   KKAQQLRDKSLPVEGCATVAGRTDKGVSALQQVCSFYTWRTDVKTQEIEHAINTVAPGQL 150

Query: 942  KVASVYEVPREFHPNFSAKWRRYLYILPL----------HEGEGDGMCNSTKEILKMEKV 793
            +   V EV R FHPNFSAKWR YLYI PL          + G G   CN+  E  K E V
Sbjct: 151  RAVYVSEVSRAFHPNFSAKWRHYLYIFPLKVEEESLGLENIGGGFIQCNNHDEERK-EWV 209

Query: 792  SATAESECK--------QLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPA 637
                E+ C         + +KP  F V+ V++ L+QLEGR LSYK+FARDT++SR+ GP 
Sbjct: 210  ENGLENGCSIMVDEDYLERSKPMRFSVSKVDRILRQLEGRLLSYKMFARDTKSSRNEGPP 269

Query: 636  TECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXAD 457
            TEC +YHARAA   LPC  + DG+    VMCVELVANRFLRKM               A 
Sbjct: 270  TECFLYHARAAETRLPCPDEVDGNGL-GVMCVELVANRFLRKMVRVLVATSIREAAAGAG 328

Query: 456  PNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDINNENS 337
             ++ L LM+ATCRRA+APPAPPDGLCLVDVGYED    N+
Sbjct: 329  DDVLLRLMDATCRRATAPPAPPDGLCLVDVGYEDFKPGNT 368


>ref|XP_006372225.1| tRNA pseudouridine synthase family protein [Populus trichocarpa]
            gi|550318756|gb|ERP50022.1| tRNA pseudouridine synthase
            family protein [Populus trichocarpa]
          Length = 457

 Score =  260 bits (665), Expect = 6e-67
 Identities = 147/285 (51%), Positives = 176/285 (61%), Gaps = 22/285 (7%)
 Frame = -2

Query: 1122 KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 943
            KK ++L+ +  P+E   SVAGRTDKGVSAL QVCSFYTWRKDV   E+E  IN +A   +
Sbjct: 174  KKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVCSFYTWRKDVKPHEIEDAINDVAPGKV 233

Query: 942  KVASVYEVPREFHPNFSAKWRRYLYILPLHEG------EGDG-------------MCNST 820
            +V S+ EV R FHPNFSAKWRRYLYI PL++G      EG+G               N  
Sbjct: 234  RVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREEIEGEGGIENFSSHENCEKQRNEC 293

Query: 819  KEILKMEKVS---ATAESECKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRS 649
             E+   E V     + E E +   KP +F V  VNQ LQQLEG+ LSYK+FARDT+ASR+
Sbjct: 294  GELASEENVENSIISDEDELQGAKKPRSFSVCRVNQLLQQLEGKLLSYKMFARDTKASRN 353

Query: 648  SGPATECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXX 469
             GP TEC +YHARA    LP      G R   VMCVEL+ANRFLRKM             
Sbjct: 354  VGPPTECFLYHARATETRLPSPDHEKGIR---VMCVELIANRFLRKMVRVLVATSVREAA 410

Query: 468  XXADPNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDINNENSI 334
              A  +  L LM+ATCRRA+APPAPPDGLCLVDVGY + +  N +
Sbjct: 411  AGAQEDALLKLMDATCRRATAPPAPPDGLCLVDVGYTEFDPRNCL 455


>ref|XP_006372224.1| hypothetical protein POPTR_0018s14400g [Populus trichocarpa]
            gi|550318755|gb|ERP50021.1| hypothetical protein
            POPTR_0018s14400g [Populus trichocarpa]
          Length = 448

 Score =  260 bits (665), Expect = 6e-67
 Identities = 147/285 (51%), Positives = 176/285 (61%), Gaps = 22/285 (7%)
 Frame = -2

Query: 1122 KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 943
            KK ++L+ +  P+E   SVAGRTDKGVSAL QVCSFYTWRKDV   E+E  IN +A   +
Sbjct: 165  KKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVCSFYTWRKDVKPHEIEDAINDVAPGKV 224

Query: 942  KVASVYEVPREFHPNFSAKWRRYLYILPLHEG------EGDG-------------MCNST 820
            +V S+ EV R FHPNFSAKWRRYLYI PL++G      EG+G               N  
Sbjct: 225  RVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREEIEGEGGIENFSSHENCEKQRNEC 284

Query: 819  KEILKMEKVS---ATAESECKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRS 649
             E+   E V     + E E +   KP +F V  VNQ LQQLEG+ LSYK+FARDT+ASR+
Sbjct: 285  GELASEENVENSIISDEDELQGAKKPRSFSVCRVNQLLQQLEGKLLSYKMFARDTKASRN 344

Query: 648  SGPATECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXX 469
             GP TEC +YHARA    LP      G R   VMCVEL+ANRFLRKM             
Sbjct: 345  VGPPTECFLYHARATETRLPSPDHEKGIR---VMCVELIANRFLRKMVRVLVATSVREAA 401

Query: 468  XXADPNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDINNENSI 334
              A  +  L LM+ATCRRA+APPAPPDGLCLVDVGY + +  N +
Sbjct: 402  AGAQEDALLKLMDATCRRATAPPAPPDGLCLVDVGYTEFDPRNCL 446


>ref|XP_002331405.1| predicted protein [Populus trichocarpa]
          Length = 428

 Score =  260 bits (665), Expect = 6e-67
 Identities = 147/285 (51%), Positives = 176/285 (61%), Gaps = 22/285 (7%)
 Frame = -2

Query: 1122 KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 943
            KK ++L+ +  P+E   SVAGRTDKGVSAL QVCSFYTWRKDV   E+E  IN +A   +
Sbjct: 145  KKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVCSFYTWRKDVKPHEIEDAINDVAPGKV 204

Query: 942  KVASVYEVPREFHPNFSAKWRRYLYILPLHEG------EGDG-------------MCNST 820
            +V S+ EV R FHPNFSAKWRRYLYI PL++G      EG+G               N  
Sbjct: 205  RVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREEIEGEGGIENFSSHENCEKQRNEC 264

Query: 819  KEILKMEKVS---ATAESECKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRS 649
             E+   E V     + E E +   KP +F V  VNQ LQQLEG+ LSYK+FARDT+ASR+
Sbjct: 265  GELASEENVENSIISDEDELQGAKKPRSFSVCRVNQLLQQLEGKLLSYKMFARDTKASRN 324

Query: 648  SGPATECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXX 469
             GP TEC +YHARA    LP      G R   VMCVEL+ANRFLRKM             
Sbjct: 325  VGPPTECFLYHARATETRLPSPDHEKGIR---VMCVELIANRFLRKMVRVLVATSVREAA 381

Query: 468  XXADPNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDINNENSI 334
              A  +  L LM+ATCRRA+APPAPPDGLCLVDVGY + +  N +
Sbjct: 382  AGAQEDALLKLMDATCRRATAPPAPPDGLCLVDVGYTEFDPRNCL 426


>gb|AFK45334.1| unknown [Medicago truncatula]
          Length = 400

 Score =  260 bits (664), Expect = 8e-67
 Identities = 140/268 (52%), Positives = 175/268 (65%), Gaps = 4/268 (1%)
 Frame = -2

Query: 1119 KVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLK 940
            K + L+ KG+PI+   +VAGRTDKGV+AL QVCSFYTW+KD+   E+E  IN  A   L+
Sbjct: 134  KTQLLKDKGLPIQGCAAVAGRTDKGVTALQQVCSFYTWKKDIKPREIEDAINDAAPGKLR 193

Query: 939  VASVYEVPREFHPNFSAKWRRYLYILPLHEG----EGDGMCNSTKEILKMEKVSATAESE 772
            V SVYEV R FHPNFSAKWRRYLYI PL +G    +  G   S    +  E   + ++ E
Sbjct: 194  VVSVYEVSRAFHPNFSAKWRRYLYIFPLTDGQDKDQSGGNGESCDSFIYNEICDSDSKDE 253

Query: 771  CKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTMYHARAAVATL 592
             ++ NK Y F V  VN+ LQ+LEG+ LSYK+FARDT+ASR+ GP TEC ++HARA  A L
Sbjct: 254  LEKENKSYVFGVRKVNRLLQKLEGKMLSYKMFARDTKASRNDGPPTECFVHHARAMEAKL 313

Query: 591  PCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEATCRRA 412
            P     +G  T+ VMC+ELVANRFLRKM               A+ +  L LM+ATCRRA
Sbjct: 314  PI--TENGEETR-VMCIELVANRFLRKMVRVLVATTIREAAAGAEDDALLKLMDATCRRA 370

Query: 411  SAPPAPPDGLCLVDVGYEDINNENSIFL 328
            +APPAPPDGL LVDVGY +   E    +
Sbjct: 371  TAPPAPPDGLGLVDVGYAEFEREKCFIM 398


>gb|EMJ23926.1| hypothetical protein PRUPE_ppa006478mg [Prunus persica]
          Length = 409

 Score =  259 bits (661), Expect = 2e-66
 Identities = 141/286 (49%), Positives = 178/286 (62%), Gaps = 21/286 (7%)
 Frame = -2

Query: 1122 KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 943
            +K + L+ KG+P+E A  VAGRTDKGV+A+HQVCSFYTWRKDV + ++   IN+ A   L
Sbjct: 125  RKAQMLKDKGLPLEGAALVAGRTDKGVTAVHQVCSFYTWRKDVKSQDITDAINSAAPGKL 184

Query: 942  KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGMCNSTKEILKMEKVSAT---AESE 772
            +V SV EV R FHPNF+AKWR YLYI P ++ E     N + E  +  K        ++ 
Sbjct: 185  RVVSVTEVSRAFHPNFTAKWRHYLYIFPFNDEEDMEQSNQSGENAQNFKSLENYHEHKNG 244

Query: 771  CKQLN------------------KPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSS 646
            C Q N                  KP  F V+ VNQ LQ+LEG+ LSYK+FARDT+ SR+ 
Sbjct: 245  CDQCNEANVGNLVINDNEDLETLKPREFTVSRVNQLLQKLEGKLLSYKMFARDTKPSRNE 304

Query: 645  GPATECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXX 466
            GP TEC +YHARA  + LPC     G R   VMC+ELVANRFLR+M              
Sbjct: 305  GPPTECFLYHARAKESKLPCSEHEKGRR---VMCIELVANRFLRRMVRVLVATSIREAAA 361

Query: 465  XADPNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDINNENSIFL 328
             AD +  L LM+ATCRRA+APPAPPDGLCLVDVGYE+ + ++ + L
Sbjct: 362  GADEDALLKLMDATCRRATAPPAPPDGLCLVDVGYEEFDPQDCLIL 407


>gb|EOY32188.1| Pseudouridine synthase isoform 3 [Theobroma cacao]
          Length = 303

 Score =  258 bits (660), Expect = 2e-66
 Identities = 146/286 (51%), Positives = 176/286 (61%), Gaps = 23/286 (8%)
 Frame = -2

Query: 1122 KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 943
            KK + L+ K  P+E    VAGRTDKGVSA+ QVCSFYTWRKDV   ++E  IN++A   L
Sbjct: 19   KKAQLLKEKSKPLEGCAVVAGRTDKGVSAIRQVCSFYTWRKDVKPWDIEDAINSVAPGKL 78

Query: 942  KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGM-CNSTKEI--------------- 811
            +V SV EV R FHPNFSAKWR YLYI PL   E +   C + KE+               
Sbjct: 79   RVVSVSEVSRVFHPNFSAKWRHYLYIFPLSNQEIEKQSCENKKEVENFISDGNYNEQRNG 138

Query: 810  ----LKMEKVSATAESE---CKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASR 652
                ++ E V     S+    +  NKP  F V  VNQ LQQLE + LSYK+FARDT+ASR
Sbjct: 139  YLENIRWENVENLIISDNMGLEAANKPTRFSVCRVNQLLQQLERKLLSYKMFARDTKASR 198

Query: 651  SSGPATECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXX 472
            + GP TEC MYHARAA A +PC    +G   + VMCVELVANRFLRKM            
Sbjct: 199  NIGPPTECFMYHARAAEARIPCSDHGEG---REVMCVELVANRFLRKMVRVLVATSIREA 255

Query: 471  XXXADPNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDINNENSI 334
               A+ +  L LM ATCRRA+APPAPPDGLCLVDVGY + + +N +
Sbjct: 256  AAGAEEDALLKLMGATCRRATAPPAPPDGLCLVDVGYTEFDPQNCL 301


>gb|EOY32186.1| Pseudouridine synthase isoform 1 [Theobroma cacao]
          Length = 444

 Score =  258 bits (660), Expect = 2e-66
 Identities = 146/286 (51%), Positives = 176/286 (61%), Gaps = 23/286 (8%)
 Frame = -2

Query: 1122 KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 943
            KK + L+ K  P+E    VAGRTDKGVSA+ QVCSFYTWRKDV   ++E  IN++A   L
Sbjct: 160  KKAQLLKEKSKPLEGCAVVAGRTDKGVSAIRQVCSFYTWRKDVKPWDIEDAINSVAPGKL 219

Query: 942  KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGM-CNSTKEI--------------- 811
            +V SV EV R FHPNFSAKWR YLYI PL   E +   C + KE+               
Sbjct: 220  RVVSVSEVSRVFHPNFSAKWRHYLYIFPLSNQEIEKQSCENKKEVENFISDGNYNEQRNG 279

Query: 810  ----LKMEKVSATAESE---CKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASR 652
                ++ E V     S+    +  NKP  F V  VNQ LQQLE + LSYK+FARDT+ASR
Sbjct: 280  YLENIRWENVENLIISDNMGLEAANKPTRFSVCRVNQLLQQLERKLLSYKMFARDTKASR 339

Query: 651  SSGPATECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXX 472
            + GP TEC MYHARAA A +PC    +G   + VMCVELVANRFLRKM            
Sbjct: 340  NIGPPTECFMYHARAAEARIPCSDHGEG---REVMCVELVANRFLRKMVRVLVATSIREA 396

Query: 471  XXXADPNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDINNENSI 334
               A+ +  L LM ATCRRA+APPAPPDGLCLVDVGY + + +N +
Sbjct: 397  AAGAEEDALLKLMGATCRRATAPPAPPDGLCLVDVGYTEFDPQNCL 442


>ref|XP_004965639.1| PREDICTED: uncharacterized protein LOC101778125 [Setaria italica]
          Length = 422

 Score =  258 bits (659), Expect = 3e-66
 Identities = 139/260 (53%), Positives = 171/260 (65%)
 Frame = -2

Query: 1122 KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 943
            +K K+LEA+ +PIE    VAGRTDKGV+AL QVCSFYTWRKDV + +++  I   A + L
Sbjct: 168  RKAKQLEARSLPIEGGAIVAGRTDKGVTALQQVCSFYTWRKDVKSEDIKDAIKEAAPDKL 227

Query: 942  KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGMCNSTKEILKMEKVSATAESECKQ 763
            K   V EV REFHPNF+AKWRRY+YI PL E     +     E+LK            + 
Sbjct: 228  KPLHVSEVAREFHPNFAAKWRRYMYIFPLDEDAKSIIGEGHSEVLK----------NSEH 277

Query: 762  LNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTMYHARAAVATLPCI 583
            + KP +FDVA V++ L++L G+ LSYK+FARDTQASRS GP TEC M+H+RAA A L C 
Sbjct: 278  IIKPQSFDVAKVDEILRKLAGKTLSYKMFARDTQASRSVGPPTECFMFHSRAAAAKLYC- 336

Query: 582  GKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEATCRRASAP 403
               D     +VMCVELVANRFLRKM               A  +  LNLMEAT RRA+AP
Sbjct: 337  ANEDYKEGLSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLNLMEATDRRATAP 396

Query: 402  PAPPDGLCLVDVGYEDINNE 343
            PAPP+GLCLVDVGY+D + +
Sbjct: 397  PAPPEGLCLVDVGYKDFSKQ 416


>gb|EOY32187.1| Pseudouridine synthase isoform 2 [Theobroma cacao]
          Length = 446

 Score =  258 bits (659), Expect = 3e-66
 Identities = 146/286 (51%), Positives = 176/286 (61%), Gaps = 23/286 (8%)
 Frame = -2

Query: 1122 KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 943
            KK + L+ K  P+E    VAGRTDKGVSA+ QVCSFYTWRKDV   ++E  IN++A   L
Sbjct: 160  KKAQLLKEKSKPLEGCAVVAGRTDKGVSAIRQVCSFYTWRKDVKPWDIEDAINSVAPGKL 219

Query: 942  KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGM-CNSTKEI--------------- 811
            +V SV EV R FHPNFSAKWR YLYI PL   E +   C + KE+               
Sbjct: 220  RVVSVSEVSRVFHPNFSAKWRHYLYIFPLSNQEIEKQSCENKKEVENFISDGNYNEQRNG 279

Query: 810  ----LKMEKVSATAESE---CKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASR 652
                ++ E V     S+    +  NKP  F V  VNQ LQQLE + LSYK+FARDT+ASR
Sbjct: 280  YLENIRWENVENLIISDNMGLEAANKPTRFSVCRVNQLLQQLERKLLSYKMFARDTKASR 339

Query: 651  SSGPATECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXX 472
            + GP TEC MYHARAA A +PC   +D    + VMCVELVANRFLRKM            
Sbjct: 340  NIGPPTECFMYHARAAEARIPC-SVNDHGEGREVMCVELVANRFLRKMVRVLVATSIREA 398

Query: 471  XXXADPNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDINNENSI 334
               A+ +  L LM ATCRRA+APPAPPDGLCLVDVGY + + +N +
Sbjct: 399  AAGAEEDALLKLMGATCRRATAPPAPPDGLCLVDVGYTEFDPQNCL 444


>ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223536579|gb|EEF38224.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 443

 Score =  258 bits (659), Expect = 3e-66
 Identities = 145/280 (51%), Positives = 172/280 (61%), Gaps = 22/280 (7%)
 Frame = -2

Query: 1122 KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 943
            KK ++L+    P+E    VAGRTDKGVSAL QVCSFYTWRKDV   E+E  IN+ A   +
Sbjct: 160  KKAQQLKEACKPLEGCAVVAGRTDKGVSALRQVCSFYTWRKDVRPHEIEDAINSSAPGKI 219

Query: 942  KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEG-------------------DGMCNST 820
            +V SV EV R FHPNFSAKWRRYLYI P+++GE                    D   N  
Sbjct: 220  RVISVSEVSRVFHPNFSAKWRRYLYIFPINDGEDSEQSFDSEDLENLRSYEKYDEQRNGC 279

Query: 819  KEILKMEKVSATAESECKQL---NKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRS 649
             E+   E V     S+  +L    KP  F +  VNQ LQQLEG+ LSYKIFARDT+ASR+
Sbjct: 280  AELTSEEHVEELITSDKDELEGAKKPRIFSICRVNQLLQQLEGKLLSYKIFARDTKASRN 339

Query: 648  SGPATECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXX 469
             GP TEC +YHARA  A LPC    +G   + VMCVELVANRFLRKM             
Sbjct: 340  VGPPTECFIYHARATEARLPCPDHGEG---RKVMCVELVANRFLRKMVRVLVATSIREAA 396

Query: 468  XXADPNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDIN 349
              A+ +  L LM+A+CRRASAPPAPPDGLCL DVGY + +
Sbjct: 397  AGAEDDALLKLMDASCRRASAPPAPPDGLCLFDVGYTEFD 436


>gb|EXC12817.1| tRNA pseudouridine synthase A [Morus notabilis]
          Length = 446

 Score =  258 bits (658), Expect = 4e-66
 Identities = 145/283 (51%), Positives = 177/283 (62%), Gaps = 20/283 (7%)
 Frame = -2

Query: 1122 KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 943
            KK + L+ K +P+EA   VAGRTDKGV+AL QVCSFYTWRKD+T  ++E  IN  A   L
Sbjct: 167  KKAQLLKDKCLPLEACTVVAGRTDKGVTALQQVCSFYTWRKDITCQDIEEAINNAALGKL 226

Query: 942  KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGMCNSTKEILK-MEKVSATAESECK 766
            K  SV EV R FHPNFSAKWRRYLYI P ++ E +   N   E L+  EK+    ES C 
Sbjct: 227  KAKSVSEVSRVFHPNFSAKWRRYLYIFPFNDEEDEEQSNKNGENLETYEKI----ESGCG 282

Query: 765  QLN-------------------KPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSG 643
            + N                   KP +F V+ V+Q L+ LEG+ LSYK+FARDT+ASR+ G
Sbjct: 283  EWNDESFGNLIIDDSEELESGKKPSSFSVSRVDQLLRLLEGKLLSYKMFARDTKASRNEG 342

Query: 642  PATECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXX 463
            P TEC +YHARAA A LP     +G   + +MCVELVANRFLRKM               
Sbjct: 343  PPTECFIYHARAAEARLPTSDCTEG---RKIMCVELVANRFLRKMVRVLVATSIREAAAG 399

Query: 462  ADPNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDINNENSI 334
            A+ +  L LM+ATCRRA+APPAPPDGLCLVDVGY +    N +
Sbjct: 400  AEEDALLKLMDATCRRATAPPAPPDGLCLVDVGYSEFKPNNCL 442


>ref|XP_004503558.1| PREDICTED: tRNA pseudouridine synthase A-like [Cicer arietinum]
          Length = 422

 Score =  258 bits (658), Expect = 4e-66
 Identities = 140/269 (52%), Positives = 174/269 (64%), Gaps = 5/269 (1%)
 Frame = -2

Query: 1119 KVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLK 940
            K + L+ KG+PIE   SVAGRTDKGV+AL QVCSFYTW+KD+   ++E  IN  A   L+
Sbjct: 157  KTQLLKEKGLPIEGCASVAGRTDKGVTALQQVCSFYTWKKDINPRDIEDAINDGAPGKLR 216

Query: 939  VASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGMCNSTKE-----ILKMEKVSATAES 775
            V SV+EV R FHPNFSAKWRRYLYI PL + EGD   + + E      +  E   + ++ 
Sbjct: 217  VISVHEVSRAFHPNFSAKWRRYLYIFPLTD-EGDKDQSGSNEESCDRFIYNEVCDSVSKD 275

Query: 774  ECKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTMYHARAAVAT 595
            E +   K Y F V  VN+ LQ+LEG+ LSYK+FARDT+ASR+ GP TEC +YHARA  A 
Sbjct: 276  ELENEMKSYVFSVRKVNRLLQKLEGKLLSYKMFARDTKASRNDGPPTECFVYHARAMEAR 335

Query: 594  LPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEATCRR 415
            LP     +      VMC+ELVANRFLRKM               A+ +  L LM+ATCRR
Sbjct: 336  LPTTDNGEA----RVMCIELVANRFLRKMVRVLVATTIREAAAGAEDDALLRLMDATCRR 391

Query: 414  ASAPPAPPDGLCLVDVGYEDINNENSIFL 328
            A+APPAPPDGLCLVDVGY + + +    L
Sbjct: 392  ATAPPAPPDGLCLVDVGYAEFDQKKCFIL 420


>ref|XP_006656336.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Oryza
            brachyantha]
          Length = 364

 Score =  257 bits (656), Expect = 7e-66
 Identities = 139/262 (53%), Positives = 175/262 (66%), Gaps = 2/262 (0%)
 Frame = -2

Query: 1122 KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 943
            KK K+LEA+ +PIE    VAGRTDKGV+AL QVCSFYTWRKDV + +++  IN    + L
Sbjct: 109  KKAKQLEARSLPIEGCAIVAGRTDKGVTALQQVCSFYTWRKDVKSRDIKDAINKATPDKL 168

Query: 942  KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGMCNSTKEILKMEKVSATAESECKQ 763
            ++  V EV REFHPNF+AKWRRYLYI PL E          K I   E+ S   E     
Sbjct: 169  RLLHVSEVSREFHPNFAAKWRRYLYIFPLDE--------DAKPISGEEQPSKILEGSEYN 220

Query: 762  LNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTMYHARAAVATLPCI 583
            + KP +F+V  V++ ++QLEG+ LSYK+FARDTQASRS GP TEC M+H+RA+V  L   
Sbjct: 221  I-KPQSFNVVKVDKIIRQLEGKSLSYKMFARDTQASRSVGPPTECFMFHSRASVVKLHSA 279

Query: 582  GKH--DGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEATCRRAS 409
             ++  +G R    +C+ELVANRFLRKM               A+ +  LNLMEATCRRA+
Sbjct: 280  DENCEEGMR---AICIELVANRFLRKMVRVLVATAIREAAAGAEEDALLNLMEATCRRAT 336

Query: 408  APPAPPDGLCLVDVGYEDINNE 343
            APPAPP+GLCLVDVGY+D N +
Sbjct: 337  APPAPPEGLCLVDVGYDDFNRQ 358


>ref|XP_002438801.1| hypothetical protein SORBIDRAFT_10g026490 [Sorghum bicolor]
            gi|241917024|gb|EER90168.1| hypothetical protein
            SORBIDRAFT_10g026490 [Sorghum bicolor]
          Length = 318

 Score =  257 bits (656), Expect = 7e-66
 Identities = 141/260 (54%), Positives = 169/260 (65%)
 Frame = -2

Query: 1122 KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 943
            +K K+LEA+ +PIE    VAGRTDKGV+AL QVCSFYTWRKDV + +++  IN  A + L
Sbjct: 63   RKAKQLEARSLPIEGCAVVAGRTDKGVTALQQVCSFYTWRKDVKSGDIKDAINEAAPDKL 122

Query: 942  KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGMCNSTKEILKMEKVSATAESECKQ 763
            K   V EVPREFHPNFSAKWRRY+YI PL E            ++  E  S+      + 
Sbjct: 123  KPLHVSEVPREFHPNFSAKWRRYMYIFPLDE---------DANLILGEAHSSKILENSEH 173

Query: 762  LNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTMYHARAAVATLPCI 583
              KP +FDVA V++ L+ L G+ LSYK+FARDTQASRS GP TEC M+H+RAAVA L   
Sbjct: 174  NIKPQSFDVAKVDKILKTLAGKTLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLH-Y 232

Query: 582  GKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEATCRRASAP 403
               D      VMCVELVANRFLRKM               A  +  LNLMEAT RRA+AP
Sbjct: 233  ANEDYKEGMMVMCVELVANRFLRKMVRVLVATAIREAAAGAGDDALLNLMEATDRRATAP 292

Query: 402  PAPPDGLCLVDVGYEDINNE 343
            PAPP+GLCL+DVGYED   +
Sbjct: 293  PAPPEGLCLIDVGYEDFTKQ 312