BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00018509
         (887 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR17440.1| unknown [Picea sitchensis]                             293   4e-77
ref|XP_001754105.1| predicted protein [Physcomitrella patens] gi...   225   2e-56
ref|XP_001700791.1| hypothetical protein CHLREDRAFT_155892 [Chla...   194   4e-47
ref|XP_002503679.1| RNA polymerase [Micromonas sp. RCC299] gi|22...   187   4e-45
ref|XP_003055453.1| predicted protein [Micromonas pusilla CCMP15...   179   9e-43
ref|XP_001422238.1| predicted protein [Ostreococcus lucimarinus ...   177   6e-42
ref|XP_003084167.1| RNA polymerase III, subunit C34 (ISS) [Ostre...   177   6e-42
ref|XP_006845803.1| hypothetical protein AMTR_s00019p00255850 [A...   169   1e-39
ref|XP_005849549.1| hypothetical protein CHLNCDRAFT_59631 [Chlor...   169   2e-39
ref|XP_005649155.1| RNA polymerase Rpc34 [Coccomyxa subellipsoid...   167   6e-39
ref|XP_003551792.1| PREDICTED: DNA-directed RNA polymerase III s...   165   2e-38
ref|XP_785983.3| PREDICTED: DNA-directed RNA polymerase III subu...   163   9e-38
gb|ESW11339.1| hypothetical protein PHAVU_008G021700g [Phaseolus...   162   2e-37
ref|XP_002954233.1| hypothetical protein VOLCADRAFT_118667 [Volv...   162   2e-37
gb|EXB67305.1| DNA-directed RNA polymerase III subunit RPC6 [Mor...   159   1e-36
gb|EMJ10006.1| hypothetical protein PRUPE_ppa024742mg [Prunus pe...   157   6e-36
ref|XP_003635403.1| PREDICTED: DNA-directed RNA polymerase III s...   155   1e-35
emb|CBI36309.3| unnamed protein product [Vitis vinifera]              155   2e-35
ref|XP_002266428.1| PREDICTED: DNA-directed RNA polymerase III s...   155   2e-35
ref|XP_002731250.1| PREDICTED: DNA-directed RNA polymerase III s...   154   3e-35

>gb|ABR17440.1| unknown [Picea sitchensis]
          Length = 262

 Score =  293 bits (751), Expect = 4e-77
 Identities = 143/247 (57%), Positives = 187/247 (75%), Gaps = 2/247 (0%)
 Frame = -1

Query: 737 MEENLRDVSLEVRVQAINRLSKAGQLEFYKQGSFNVYKILRKELSDKLSGLSQEDRIVYQ 558
           MEENL+DV L VR QA+N L +  QL+ +KQG F VYK   KE S +  GLS ED ++YQ
Sbjct: 1   MEENLKDVDLNVRAQALNALLQKRQLQIFKQGDFIVYKQQTKEESVRFKGLSSEDMLIYQ 60

Query: 557 AIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIK--NSQGKKVFMLAELSP 384
           AI+ AGN GIWT  +KRETNL +PQ  KALKNLE R +IK +K  ++Q KKV+MLAEL+P
Sbjct: 61  AIKNAGNMGIWTKDMKRETNLQQPQVNKALKNLEARGLIKGVKCVSNQAKKVYMLAELTP 120

Query: 383 SDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIADLVKSSGILKEQIKIDA 204
           S ++TGG +YT    D E  NIVK  CL+ V Q+ +AT+ES+AD V+ SGI K ++K++ 
Sbjct: 121 SKEITGGAWYTGQNFDTEFTNIVKQQCLQFVLQQGVATIESVADFVRKSGISKVELKVEE 180

Query: 203 VKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQIRAQETSAFTNVPCGICPVLH 24
           +KQ++DML++D +VEEV STG G+F++IP+N  CYR SQ R QE+SAFTN+PCG+CPVL 
Sbjct: 181 LKQILDMLVLDGDVEEVISTGTGDFAAIPINKLCYRGSQARIQESSAFTNIPCGVCPVLR 240

Query: 23  ECTEDGL 3
           ECT+DGL
Sbjct: 241 ECTDDGL 247


>ref|XP_001754105.1| predicted protein [Physcomitrella patens]
           gi|162694659|gb|EDQ81006.1| predicted protein
           [Physcomitrella patens]
          Length = 361

 Score =  225 bits (573), Expect = 2e-56
 Identities = 117/253 (46%), Positives = 171/253 (67%), Gaps = 2/253 (0%)
 Frame = -1

Query: 755 GLTDKMMEENLRDVSLEVRVQAINRLSKAGQLEFYKQGSFNVYKILRKELSDKLSGLSQE 576
           GL  ++++E + D  LE+  QA+N L    +L  + QG   VYK    +++ K  GLS E
Sbjct: 101 GLPQRVLDEEIPD--LEMLSQALNFLLSKQKLVVFTQGDNIVYKEQSADVAVKFKGLSSE 158

Query: 575 DRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKN--SQGKKVFM 402
           D +VYQ+I+ A N GIWT  +KR TNL +PQ  KALKNLE R+++K +K   ++ +KV+M
Sbjct: 159 DMLVYQSIEAAANQGIWTADLKRRTNLQQPQINKALKNLEGRSLVKAVKTVTNKNRKVYM 218

Query: 401 LAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIADLVKSSGILKE 222
           L +L+PS ++TGG +YT+   D E +++VK  CL+ + ++ LA LE+IAD +K SGI + 
Sbjct: 219 LFDLTPSREVTGGAWYTEQDYDAEFVDVVKQQCLQFITRQGLADLEAIADAIKKSGITQV 278

Query: 221 QIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQIRAQETSAFTNVPCG 42
           ++ ++  KQ+MD L++D +VEE  + G G +SS   +T CYRV++ R  ETSA TNVPCG
Sbjct: 279 ELGLEEFKQIMDTLVLDGDVEE--TMGGGTYSS---DTLCYRVAKARIPETSALTNVPCG 333

Query: 41  ICPVLHECTEDGL 3
           ICPVLHEC   GL
Sbjct: 334 ICPVLHECQPGGL 346


>ref|XP_001700791.1| hypothetical protein CHLREDRAFT_155892 [Chlamydomonas reinhardtii]
           gi|158281290|gb|EDP07045.1| predicted protein
           [Chlamydomonas reinhardtii]
          Length = 285

 Score =  194 bits (493), Expect = 4e-47
 Identities = 100/276 (36%), Positives = 168/276 (60%), Gaps = 3/276 (1%)
 Frame = -1

Query: 821 VSAAQLNSAINQILELSKAHPNGLTDKMMEENLRDVSLEVRVQAINRLSKAGQLEFYKQG 642
           ++AA+      Q+L+L + HP G+TD  +E  L  V L+ RV A+N L  A +L+  K  
Sbjct: 1   MAAAKEKQLEEQLLQLLRQHPQGMTDDALESALPAVPLQERVHAVNSLLAASRLQLLKTS 60

Query: 641 SFN-VYKILRKELSDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALK 465
           +   VYK +  E + K  GLS E+ ++YQ I+ AGN G+WT  ++  TNLA+PQ  K LK
Sbjct: 61  NGKLVYKEVAVEEAAKFKGLSPEELLIYQCIKTAGNTGVWTKDMRIRTNLAQPQITKILK 120

Query: 464 NLETRAMIKQIKN--SQGKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIV 291
            LE R ++K +KN  S  +KV+MLAEL PS +LTGG +YT+N+ D E IN++++ C   +
Sbjct: 121 VLEGRKLVKAVKNVNSPSRKVYMLAELEPSRELTGGAWYTENQFDSEFINVLREACFSYI 180

Query: 290 AQKKLATLESIADLVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMN 111
           +++   +L ++A  +++ G  K +++ + ++ ++  L+ D  V+EV   G+ +      N
Sbjct: 181 SRQGDVSLSAVAAFIRAKGFSKVELRTEDIQTIVMTLVYDGRVDEVEPEGEDD------N 234

Query: 110 TQCYRVSQIRAQETSAFTNVPCGICPVLHECTEDGL 3
              YR + +   +++  T+VPCG+CPV  +C + G+
Sbjct: 235 DDHYRPAVLPVPDSTPLTDVPCGVCPVAGQCHDGGV 270


>ref|XP_002503679.1| RNA polymerase [Micromonas sp. RCC299] gi|226518946|gb|ACO64937.1|
           RNA polymerase [Micromonas sp. RCC299]
          Length = 307

 Score =  187 bits (475), Expect = 4e-45
 Identities = 98/280 (35%), Positives = 163/280 (58%), Gaps = 19/280 (6%)
 Frame = -1

Query: 785 ILELSKAHPNGLTDKMMEENLRDVSLEVRVQAINRLSKAGQLEFYKQGSFNVYKILRKEL 606
           ILE  + HP G+ D+ + + +  + +  R QAIN L  + +L+ YK G   VY+++ +E 
Sbjct: 6   ILEQCRLHPEGIPDQDLAQKISHIPVNDRAQAINSLLSSRKLQIYKDGDTIVYRMVMQEE 65

Query: 605 SDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKN 426
           + K  GL+ ED +VYQ IQ++GN+GIWT  +K+ +NLA+ Q  K  K+LE+R +IK +K+
Sbjct: 66  AVKFRGLASEDLLVYQIIQQSGNSGIWTKELKQRSNLAQAQITKIFKSLESRKLIKAVKS 125

Query: 425 --SQGKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIAD 252
              Q +KV+ML EL PS ++TGG +YT+++ D E IN++++ C + +  +   TL+ ++D
Sbjct: 126 VSQQNRKVYMLYELEPSREITGGAWYTEHEYDAEFINVLREQCEKFIVGQGKVTLDQVSD 185

Query: 251 LVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMN------------- 111
            VK + +   ++  + V Q+++ L+ D +V++     KGE  +                 
Sbjct: 186 FVKKTKLSHVELGKEEVLQIVNTLVYDGKVDQFDEHEKGEGDADDAKGDGDVGNDERDYG 245

Query: 110 ----TQCYRVSQIRAQETSAFTNVPCGICPVLHECTEDGL 3
                  Y  +     E SAFT+VPCG+CPV +EC   GL
Sbjct: 246 DGEKVTYYVPAAYPVPEKSAFTSVPCGVCPVFNECRPGGL 285


>ref|XP_003055453.1| predicted protein [Micromonas pusilla CCMP1545]
           gi|226463427|gb|EEH60705.1| predicted protein
           [Micromonas pusilla CCMP1545]
          Length = 294

 Score =  179 bits (455), Expect = 9e-43
 Identities = 94/271 (34%), Positives = 154/271 (56%), Gaps = 10/271 (3%)
 Frame = -1

Query: 785 ILELSKAHPNGLTDKMMEENLRDVSLEVRVQAINRLSKAGQLEFYKQGSFNVYKILRKEL 606
           ILE  + HP G+ D  +   +  + +  R  AIN L  + +++ YK G   +Y+ ++K+ 
Sbjct: 6   ILEQCRLHPQGIPDADLAMEIAHIPVNERASAINALLSSRKIQVYKDGDSLIYREVQKDE 65

Query: 605 SDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKN 426
           + K  GLS ED +VYQ IQ +GN GIWT  +K+++NL + Q  K  K LE R +IK +KN
Sbjct: 66  AVKFKGLSSEDLLVYQIIQSSGNTGIWTKELKQKSNLPQTQITKIFKVLEARKLIKSVKN 125

Query: 425 --SQGKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIAD 252
              Q +KV+ML EL PS ++TGG +YT+++ D E I+++++ C + +  +  ATL+ + D
Sbjct: 126 VAQQNRKVYMLFELEPSREITGGAWYTEHEYDAEFISVLREQCDKFINSRGKATLDDVWD 185

Query: 251 LVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEV--------TSTGKGEFSSIPMNTQCYR 96
            VK + +    +  + V Q+++ L+ D +++ +         +  KG+        + Y 
Sbjct: 186 FVKRAKLSNVDLGKEEVLQIVNTLVYDGKIDAIEVPDPNFKPTAKKGKDIDAGHEGEDYS 245

Query: 95  VSQIRAQETSAFTNVPCGICPVLHECTEDGL 3
            + I     SA TNVPCG+CPV  EC   GL
Sbjct: 246 PAAIPIPSESALTNVPCGLCPVFEECVPGGL 276


>ref|XP_001422238.1| predicted protein [Ostreococcus lucimarinus CCE9901]
           gi|144582478|gb|ABP00555.1| predicted protein
           [Ostreococcus lucimarinus CCE9901]
          Length = 259

 Score =  177 bits (448), Expect = 6e-42
 Identities = 88/244 (36%), Positives = 151/244 (61%), Gaps = 6/244 (2%)
 Frame = -1

Query: 716 VSLEVRVQAINRLSKAGQLEFYKQGSFNVYKILRKELSDKLSGLSQEDRIVYQAIQRAGN 537
           +S+E R +AIN L +  +++ + +G   VY  +R+  + K  GLS ED +VYQ IQ AGN
Sbjct: 1   MSVEERAEAINTLLREKKIDVFGRGGGLVYARVREAQAAKFKGLSTEDMLVYQIIQHAGN 60

Query: 536 NGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKN--SQGKKVFMLAELSPSDDLTGG 363
            G+WT  +K+ +NL  PQ  K  K LE R +IK +K+   Q +KV+ML EL PS ++TGG
Sbjct: 61  AGMWTKELKQRSNLPVPQITKIFKTLEARKLIKSVKHVAQQNRKVYMLYELEPSREITGG 120

Query: 362 VFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIADLVKSSGILKEQIKIDAVKQVMDM 183
            +YT+ + D E I+++++ C++ +  ++  TL+ ++D V++S + +  +  D V Q+++ 
Sbjct: 121 AWYTEQEYDAEFISVLREQCVKFIYSRERVTLKEVSDFVRASELSRIDLGQDEVLQIVNT 180

Query: 182 LIIDHEVEEV----TSTGKGEFSSIPMNTQCYRVSQIRAQETSAFTNVPCGICPVLHECT 15
           L+ D +V+E+       G G+          Y  + +   E++A+T++PCG+CPV++EC 
Sbjct: 181 LVYDGKVDEIKDESQDDGMGKADEDFQPITFYTRAALPVPESNAYTDIPCGVCPVINECR 240

Query: 14  EDGL 3
            DGL
Sbjct: 241 PDGL 244


>ref|XP_003084167.1| RNA polymerase III, subunit C34 (ISS) [Ostreococcus tauri]
           gi|116056050|emb|CAL58583.1| RNA polymerase III, subunit
           C34 (ISS) [Ostreococcus tauri]
          Length = 371

 Score =  177 bits (448), Expect = 6e-42
 Identities = 91/259 (35%), Positives = 155/259 (59%), Gaps = 7/259 (2%)
 Frame = -1

Query: 758 NGLTDKMMEENLRDV-SLEVRVQAINRLSKAGQLEFYKQGSFNVYKILRKELSDKLSGLS 582
           NG+ ++ +   L  V S+  R +AIN L    ++E +K+G   VY  +R+E + K  GLS
Sbjct: 98  NGVREQDLATMLHGVMSVNERAEAINALLSERKIEIFKRGDSLVYARVREERAAKFKGLS 157

Query: 581 QEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKN--SQGKKV 408
            ED +VYQ IQ AGN G+WT  +K+ +NL  PQ  K  K LE R +IK +K+   Q +KV
Sbjct: 158 TEDMLVYQIIQHAGNAGMWTKELKQRSNLPVPQITKIFKTLEARKLIKAVKHVTQQNRKV 217

Query: 407 FMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIADLVKSSGIL 228
           +ML EL PS ++TGG +YT+   D E IN++++ C++ +  +   TL  +++ V+SS + 
Sbjct: 218 YMLYELEPSREITGGAWYTEGTHDDEFINVLREQCVKFIYSRDRVTLSEVSEFVRSSKLS 277

Query: 227 KEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIP----MNTQCYRVSQIRAQETSAF 60
             ++  D V Q+++ L+ D +V+E     + +  ++        + Y  + +   +++ +
Sbjct: 278 HVELGTDEVLQIVNTLVFDGKVDENEDESQDDGMTVADEDFKAVKYYSRAALPVPDSNPY 337

Query: 59  TNVPCGICPVLHECTEDGL 3
           T++PCG+CPV++EC  DGL
Sbjct: 338 TDIPCGVCPVINECRPDGL 356


>ref|XP_006845803.1| hypothetical protein AMTR_s00019p00255850 [Amborella trichopoda]
           gi|548848375|gb|ERN07478.1| hypothetical protein
           AMTR_s00019p00255850 [Amborella trichopoda]
          Length = 230

 Score =  169 bits (429), Expect = 1e-39
 Identities = 83/197 (42%), Positives = 132/197 (67%), Gaps = 2/197 (1%)
 Frame = -1

Query: 587 LSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKNSQG--K 414
           L+ +D+ VY+ I+++GN GIW+  +K+   + E    K+LK L ++ +IK + N     +
Sbjct: 21  LAHDDKKVYEMIEKSGNKGIWSAEMKKY--IPENILNKSLKLLLSKNLIKLVANVHNPRR 78

Query: 413 KVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIADLVKSSG 234
           KV+MLA L PS++++GG +Y+  + D ELI+++K   LR + + K+  L+ IAD +K+S 
Sbjct: 79  KVYMLANLQPSEEISGGTWYSGKEFDTELIDVLKQHTLRFITKMKVVILDKIADSIKTSE 138

Query: 233 ILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQIRAQETSAFTN 54
           ILK +++I  VKQV+D LI+D E+E V S G  EF SIP    CYR  ++   E ++F +
Sbjct: 139 ILKVEVRIQEVKQVVDSLILDREIEAVLSNGSAEFLSIPKGKVCYRCRKMGHLEPASFVS 198

Query: 53  VPCGICPVLHECTEDGL 3
           VPCG+CPV++ECT DG+
Sbjct: 199 VPCGVCPVINECTPDGV 215


>ref|XP_005849549.1| hypothetical protein CHLNCDRAFT_59631 [Chlorella variabilis]
           gi|307109209|gb|EFN57447.1| hypothetical protein
           CHLNCDRAFT_59631 [Chlorella variabilis]
          Length = 281

 Score =  169 bits (427), Expect = 2e-39
 Identities = 96/265 (36%), Positives = 152/265 (57%), Gaps = 5/265 (1%)
 Frame = -1

Query: 785 ILELSKAHPNGLTDKMMEENLRDVSLEVRVQAINRLSKAGQLEFY---KQGSFNVYKILR 615
           IL + + HP G+ D  +E  L  V++  R  AIN L  + +L+        S ++YK   
Sbjct: 9   ILTVCRKHPEGVQDTALEAELPSVAVNDRAVAINSLLASLKLQILVNPADPSSHIYKASA 68

Query: 614 KELSDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQ 435
              + +  GL+ ED +VYQ IQ AGN GIWT  +K+ TNL +P+  K LK LE R ++K 
Sbjct: 69  VGDATRFKGLTAEDMLVYQCIQGAGNMGIWTRDMKQRTNLQQPKINKILKTLEERCLVKS 128

Query: 434 IKNSQ--GKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLES 261
           IK+ Q   +KV+ML EL P+ +LTGG +Y  +  D E I ++++  +  +  K  ATL  
Sbjct: 129 IKSVQNASRKVYMLYELEPAKELTGGPWYGPDAFDSEFITVLQEATMSYINTKGDATLAD 188

Query: 260 IADLVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQIR 81
           I   +K +GI K+ ++ D V+++++ L  D ++E V    +G+   +P     YR+  + 
Sbjct: 189 IVRFIKETGISKQALQEDDVERIINTLECDGKIEGV----EGDEDGLPH----YRLPLMS 240

Query: 80  AQETSAFTNVPCGICPVLHECTEDG 6
             E + FT++PCG+CPV +EC E G
Sbjct: 241 IPEATPFTSIPCGVCPVFNECVEGG 265


>ref|XP_005649155.1| RNA polymerase Rpc34 [Coccomyxa subellipsoidea C-169]
           gi|384251133|gb|EIE24611.1| RNA polymerase Rpc34
           [Coccomyxa subellipsoidea C-169]
          Length = 275

 Score =  167 bits (422), Expect = 6e-39
 Identities = 94/265 (35%), Positives = 155/265 (58%), Gaps = 4/265 (1%)
 Frame = -1

Query: 785 ILELSKAHPNGLTDKMMEENLRDVSLEVRVQAINRLSKAGQLEFYKQGSFN--VYKILRK 612
           IL L + HP GL + ++E+ +       R  A+N L    +L   +    N  VY+ + +
Sbjct: 9   ILALCRQHPEGLPEAVLEQYIPATQ---RTTAMNNLLAKHRLRILQHPRDNSLVYQEVIQ 65

Query: 611 ELSDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQI 432
           E + KL GLS ED +VYQ I +AG+ GIWT  +K  TNL +PQ  K LKNL+ R+++K +
Sbjct: 66  EEAAKLKGLSAEDLLVYQHIAQAGDTGIWTKDLKNRTNLQQPQITKILKNLDQRSLVKSV 125

Query: 431 KN--SQGKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESI 258
           K+  +  +KV++L EL P+ +LTGG +YT    D E I +++  C + +  + +ATLE +
Sbjct: 126 KSVINPSRKVYILFELEPARELTGGAWYTGQDFDAEFIQVLQQACHKYIENEGVATLEEV 185

Query: 257 ADLVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQIRA 78
           AD V++ G  + +++   V  ++  L  D  VE          SS+  + + YR ++   
Sbjct: 186 ADFVRTKGFSRVELRDADVLCILRTLEFDGLVE----------SSLSDDGEVYRPARHVV 235

Query: 77  QETSAFTNVPCGICPVLHECTEDGL 3
            +TS FT++PCG+CPV++EC++ G+
Sbjct: 236 PKTSPFTSMPCGVCPVINECSDGGV 260


>ref|XP_003551792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
           [Glycine max]
          Length = 239

 Score =  165 bits (417), Expect = 2e-38
 Identities = 82/221 (37%), Positives = 139/221 (62%), Gaps = 6/221 (2%)
 Frame = -1

Query: 647 QGSFNVYKILRKELSDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKAL 468
           QGS ++ K  R++L+     L+  +R++Y  I    + GIWT  +KRETNL +   +K+L
Sbjct: 5   QGSSSL-KRKRQDLALVTGSLTDGERVLYNLIHSKKDMGIWTGDMKRETNLPDSIVKKSL 63

Query: 467 KNLETRAMIKQIKNSQ--GKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRI 294
           K L+++ +IK++ N Q  G+K +M AE  PS ++TGGV+Y   +LD + IN+VKDVCL+ 
Sbjct: 64  KLLQSKNLIKEVVNIQNKGRKHYMAAEFEPSKEITGGVWYNQGRLDTDFINLVKDVCLKY 123

Query: 293 VAQKKLATLESIADLVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPM 114
           + ++K+AT + + +  + SG+   ++    + +++  L++D E+ EV STG G+FSS+P+
Sbjct: 124 IFRQKVATRDGVMEWSRKSGVFNVEVTTQQIDEILRTLVLDDEIVEVKSTGFGDFSSVPV 183

Query: 113 NTQCYRVSQIRA----QETSAFTNVPCGICPVLHECTEDGL 3
              CYR          Q+  A  ++PCG+CP ++ CT DG+
Sbjct: 184 GRICYRCKSKGGNRGEQKPGAMASIPCGVCPRINFCTPDGI 224


>ref|XP_785983.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
           isoform 1 [Strongylocentrotus purpuratus]
          Length = 311

 Score =  163 bits (412), Expect = 9e-38
 Identities = 90/280 (32%), Positives = 151/280 (53%), Gaps = 19/280 (6%)
 Frame = -1

Query: 788 QILELSKAHPNGLTDKMMEENLRDVSLEVRVQAINRLSKAGQLEFYKQGSFNVYKILRKE 609
           +ILEL K +P+G+ D  +++ L +V    RV A+NRL  +G+++  K  +  VY++    
Sbjct: 18  RILELCKQNPDGIADSTLQKELPNVDTRQRVSAVNRLLSSGKIDLVKTSNELVYRLKDPG 77

Query: 608 LSDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIK 429
           +  K+ G   ++R+VYQ I+++GN GIWT  I+ ++NL   Q  K LKNLE+R +IK +K
Sbjct: 78  VVSKIKGADNQERLVYQIIEQSGNKGIWTRDIRLKSNLQLTQLNKILKNLESRKLIKAVK 137

Query: 428 N--SQGKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQK--------- 282
           +  +  KK +ML  L+P   +TGG +Y+D + + E + ++   C + + QK         
Sbjct: 138 SVGAARKKAYMLFNLTPDPSVTGGTWYSDQEFESEFVEVLNHQCFKFLQQKVESVSALQL 197

Query: 281 --------KLATLESIADLVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFS 126
                      + E +   +    I K  + +D +  +++ LI D +VE   S G G  S
Sbjct: 198 DPLLKRNRSFVSPEEVWKFITELRISKVDLSVDDINTILNTLIYDGKVEMTISAGAGT-S 256

Query: 125 SIPMNTQCYRVSQIRAQETSAFTNVPCGICPVLHECTEDG 6
           S   +++ YR  Q   Q T    + PCG+CPV ++C E G
Sbjct: 257 SSDSSSKLYRAIQPLTQPTGLMRS-PCGVCPVFNQCYEGG 295


>gb|ESW11339.1| hypothetical protein PHAVU_008G021700g [Phaseolus vulgaris]
          Length = 239

 Score =  162 bits (409), Expect = 2e-37
 Identities = 77/211 (36%), Positives = 133/211 (63%), Gaps = 6/211 (2%)
 Frame = -1

Query: 617 RKELSDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIK 438
           R++L+     ++  +R++Y  I    + GIWT  +KRETNL +   +K+LK L+++ +IK
Sbjct: 14  RQDLALVSGSMTDGERVLYNLIHSKKDMGIWTGDMKRETNLPDSIVKKSLKLLQSKNLIK 73

Query: 437 QIKNSQ--GKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLE 264
           ++ N Q  G+K +M AE  PS ++TGG +YT   LD + IN+VK+VCL+ + ++K+AT +
Sbjct: 74  EVVNIQNKGRKHYMAAEFEPSKEITGGDWYTQGSLDTDFINLVKEVCLKCIFRQKVATHD 133

Query: 263 SIADLVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQI 84
            + +  + SG+   ++    + +++  L++D E+EEV STG G+FSS+P+   CYR    
Sbjct: 134 GVLEWSRKSGVFTVEVTAQQIDEILRALVLDDEIEEVKSTGLGDFSSVPVGRICYRCKSK 193

Query: 83  RA----QETSAFTNVPCGICPVLHECTEDGL 3
                 Q+  A  ++PCG+CP ++ CT DG+
Sbjct: 194 GGNRGEQKPGAMASIPCGVCPRINFCTPDGI 224


>ref|XP_002954233.1| hypothetical protein VOLCADRAFT_118667 [Volvox carteri f.
           nagariensis] gi|300260438|gb|EFJ44657.1| hypothetical
           protein VOLCADRAFT_118667 [Volvox carteri f.
           nagariensis]
          Length = 271

 Score =  162 bits (409), Expect = 2e-37
 Identities = 94/275 (34%), Positives = 153/275 (55%), Gaps = 5/275 (1%)
 Frame = -1

Query: 812 AQLNSAINQILELSKAHPNGLTDKMMEENLRDVSLEVRVQAINRLSKAGQLEFYKQGSFN 633
           A   S    +L L + +P G+TD+ +   L  V +E RV A+N L  A +L+  K  S  
Sbjct: 2   AAARSVEEDLLRLLRQNPQGVTDEALSAALPGVPIEERVNAVNSLLAANRLQLLKNSSNK 61

Query: 632 -VYKILRKELSDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLE 456
            VYK +  E + K  GLS E+ ++YQ I+ AGN G+             P   K LK LE
Sbjct: 62  IVYKEVAAEEAAKFKGLSTEELLLYQCIKAAGNTGM-------------PGITKILKVLE 108

Query: 455 TRAMIKQIKN--SQGKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQK 282
           +R ++K +KN  +  +KV+ML+EL PS +LTGG +YT+N+ D E IN++++ C   + +K
Sbjct: 109 SRRLVKSVKNVNNPSRKVYMLSELEPSRELTGGAWYTENQFDSEFINVLREACYSYIKRK 168

Query: 281 K--LATLESIADLVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNT 108
               ++L  IA  ++S G  K +++I+ +  ++  L+ D  V+EV   G  +        
Sbjct: 169 DKVSSSLGEIAAFIRSRGFSKVELRIEDIHTIIMTLVYDGRVDEVEPEGDED-------E 221

Query: 107 QCYRVSQIRAQETSAFTNVPCGICPVLHECTEDGL 3
             YR++ +   ++++ T+VPCG+CPV  EC E G+
Sbjct: 222 DHYRLAVLGIPDSTSLTDVPCGVCPVAGECAEGGV 256


>gb|EXB67305.1| DNA-directed RNA polymerase III subunit RPC6 [Morus notabilis]
          Length = 238

 Score =  159 bits (402), Expect = 1e-36
 Identities = 76/203 (37%), Positives = 133/203 (65%), Gaps = 5/203 (2%)
 Frame = -1

Query: 596 LSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKNSQ- 420
           L  L++ +RI+Y  I+   + GIW   +KR   + +  + KALK+LET+ +IK++ N Q 
Sbjct: 21  LDSLTEHERIIYNVIRSKQDMGIWMQDMKRVAKVPDNVANKALKSLETKKLIKEVVNIQK 80

Query: 419 -GKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIADLVK 243
            GKK ++ AE  P+ ++TGG +Y++ K+D  +INI+KD CL+ + ++++ATLE I D ++
Sbjct: 81  RGKKHYVAAEFEPATEITGGAWYSNGKMDFVVINILKDQCLKWIYKQRVATLEGILDAIR 140

Query: 242 SSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQIRAQ---E 72
            SGI   ++    +++++  L++D+EV EV S G GEF SIP+   CY+ +   ++   +
Sbjct: 141 KSGISNVELTTVQIEELVRALVLDNEVVEVKSNGMGEFDSIPVGKVCYKSTSKGSRGDPK 200

Query: 71  TSAFTNVPCGICPVLHECTEDGL 3
             A +++PCG+CP + +CT DG+
Sbjct: 201 IGAMSSIPCGVCPRISDCTPDGI 223


>gb|EMJ10006.1| hypothetical protein PRUPE_ppa024742mg [Prunus persica]
          Length = 236

 Score =  157 bits (396), Expect = 6e-36
 Identities = 80/207 (38%), Positives = 127/207 (61%), Gaps = 6/207 (2%)
 Frame = -1

Query: 605 SDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKN 426
           S     L++ ++IVY  I+   + GIWT  +K+E NL +    K++K+L+ + +IK++ N
Sbjct: 15  SSPSESLTEHEKIVYSVIRSKQDMGIWTRDMKKEANLPDNLVGKSIKSLQAKNLIKEVVN 74

Query: 425 --SQGKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIAD 252
             S+G+K +M AE  PS +LTGG +Y++  LD   I+ VKD   +I+ Q K+ATLE I+D
Sbjct: 75  VQSKGRKHYMAAEFEPSKELTGGDWYSNGTLDKYYISCVKDGFAKIIYQLKVATLEGISD 134

Query: 251 LVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVS----QI 84
            VK SGI K       +++++ +L++D  V EV STG GEF S P+   CY+ +      
Sbjct: 135 EVKKSGIFKTSFTKQQIEEILRVLVLDKRVTEVKSTGMGEFGSFPVGKVCYKSTSKGGSK 194

Query: 83  RAQETSAFTNVPCGICPVLHECTEDGL 3
           R  +  A  ++PCG+CP + +CT DG+
Sbjct: 195 REPKVGAMASIPCGVCPRISQCTPDGI 221


>ref|XP_003635403.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
           vinifera]
          Length = 239

 Score =  155 bits (393), Expect = 1e-35
 Identities = 74/202 (36%), Positives = 124/202 (61%), Gaps = 7/202 (3%)
 Frame = -1

Query: 587 LSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKN--SQGK 414
           L   +R++Y  I+   + GIWT  +KRETNL +    K+LK L+ + +IK++ N  S+G+
Sbjct: 23  LLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQVKKLIKEVVNIQSKGR 82

Query: 413 KVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIADLVKSSG 234
           K +M  E  PS +LTGG +Y +  LD E I I+K+ C+R++++ K+AT E I++ +  +G
Sbjct: 83  KHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETCVRVLSKLKVATAEGISESINKTG 142

Query: 233 ILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQI-----RAQET 69
           +   +     + +++  L++D+E+ EV S+G GEFSSIP+   CYR +            
Sbjct: 143 LCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVCYRCTNKGGLGGGGPTI 202

Query: 68  SAFTNVPCGICPVLHECTEDGL 3
            A  ++PCG+CP + +CT DG+
Sbjct: 203 GAMASIPCGVCPRITQCTPDGI 224


>emb|CBI36309.3| unnamed protein product [Vitis vinifera]
          Length = 493

 Score =  155 bits (392), Expect = 2e-35
 Identities = 73/202 (36%), Positives = 125/202 (61%), Gaps = 7/202 (3%)
 Frame = -1

Query: 587 LSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKN--SQGK 414
           L   +R++Y  I+   + GIWT  +KRETNL +    K+LK L+ + +IK++ N  S+G+
Sbjct: 113 LLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQVKKLIKEVVNIQSKGR 172

Query: 413 KVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIADLVKSSG 234
           K +M  E  PS +LTGG +Y +  LD E I I+K+ C++++++ K+AT E I++ +  +G
Sbjct: 173 KHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETCVKVLSKLKVATAEGISESINKTG 232

Query: 233 ILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQI-----RAQET 69
           +   +     + +++  L++D+E+ EV S+G GEFSSIP+   CYR +          + 
Sbjct: 233 LCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVCYRCTNKGGLGGGGPKI 292

Query: 68  SAFTNVPCGICPVLHECTEDGL 3
            A  ++PCG+CP + +CT DG+
Sbjct: 293 GAMASIPCGVCPRITQCTPDGI 314


>ref|XP_002266428.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
           vinifera]
          Length = 239

 Score =  155 bits (392), Expect = 2e-35
 Identities = 73/202 (36%), Positives = 125/202 (61%), Gaps = 7/202 (3%)
 Frame = -1

Query: 587 LSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQIKN--SQGK 414
           L   +R++Y  I+   + GIWT  +KRETNL +    K+LK L+ + +IK++ N  S+G+
Sbjct: 23  LLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQVKKLIKEVVNIQSKGR 82

Query: 413 KVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKLATLESIADLVKSSG 234
           K +M  E  PS +LTGG +Y +  LD E I I+K+ C++++++ K+AT E I++ +  +G
Sbjct: 83  KHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETCVKVLSKLKVATAEGISESINKTG 142

Query: 233 ILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEFSSIPMNTQCYRVSQI-----RAQET 69
           +   +     + +++  L++D+E+ EV S+G GEFSSIP+   CYR +          + 
Sbjct: 143 LCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVCYRCTNKGGLGGGGPKI 202

Query: 68  SAFTNVPCGICPVLHECTEDGL 3
            A  ++PCG+CP + +CT DG+
Sbjct: 203 GAMASIPCGVCPRITQCTPDGI 224


>ref|XP_002731250.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
           [Saccoglossus kowalevskii]
          Length = 309

 Score =  154 bits (390), Expect = 3e-35
 Identities = 85/281 (30%), Positives = 152/281 (54%), Gaps = 19/281 (6%)
 Frame = -1

Query: 791 NQILELSKAHPNGLTDKMMEENLRDVSLEVRVQAINRLSKAGQLEFYKQGSFNVYKILRK 612
           N+I+EL ++ P G+ D +++E++  + +  R  AINRL  AG+++  K  +  VYK+   
Sbjct: 19  NRIIELCRSDPKGIGDAIIQEDMPHIDVRQRATAINRLLSAGRIDLLKTTAGLVYKLKDP 78

Query: 611 ELSDKLSGLSQEDRIVYQAIQRAGNNGIWTVLIKRETNLAEPQSRKALKNLETRAMIKQI 432
           + S K+ G   +++++YQ I+ AGN GIW   I+ ++NL   Q  K L+NLE++ +IK I
Sbjct: 79  QTSSKMKGSDNQEKLIYQIIEEAGNKGIWIRDIRYKSNLLMTQVSKILRNLESKKLIKAI 138

Query: 431 KN--SQGKKVFMLAELSPSDDLTGGVFYTDNKLDPELINIVKDVCLRIVAQKKL------ 276
           K+  +  KKV+ML  + P   +TGG +Y+D   + E + ++   C++ + Q ++      
Sbjct: 139 KSVGASKKKVYMLYNIDPDRSVTGGAWYSDQDFESEFVEVLNQQCMKFLHQTRVNAENSK 198

Query: 275 -----------ATLESIADLVKSSGILKEQIKIDAVKQVMDMLIIDHEVEEVTSTGKGEF 129
                      A+   +   +   GI K Q+ ++ ++ +++ LI D++V EVT     E 
Sbjct: 199 HDPITKRNASYASSNEVWKFISELGISKVQLSVEDIETILNTLIYDNKV-EVTVVASVES 257

Query: 128 SSIPMNTQCYRVSQIRAQETSAFTNVPCGICPVLHECTEDG 6
             I +    YR  ++  + T       CG+CPV +EC E G
Sbjct: 258 GQIKL----YRSIELLIEPT-GLMRTACGVCPVFNECQEGG 293