BLASTX nr result
ID: Ephedra26_contig00018046
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00018046
(409 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera] 96 7e-18
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi... 95 9e-18
emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera] 95 9e-18
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera] 95 9e-18
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi... 95 1e-17
gb|ABR16307.1| unknown [Picea sitchensis] 95 1e-17
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] 95 1e-17
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal... 95 1e-17
emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera] 93 3e-17
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A... 93 4e-17
gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsi... 91 1e-16
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi... 91 2e-16
emb|CAN66871.1| hypothetical protein VITISV_021425 [Vitis vinifera] 91 2e-16
emb|CAN79116.1| hypothetical protein VITISV_002093 [Vitis vinifera] 90 3e-16
ref|XP_006590044.1| PREDICTED: uncharacterized protein LOC102665... 90 4e-16
emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera] 89 5e-16
emb|CAN71445.1| hypothetical protein VITISV_042489 [Vitis vinifera] 89 5e-16
gb|AAT38797.2| Polyprotein, putative [Solanum demissum] 87 2e-15
dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana] gi... 86 4e-15
gb|AAG51247.1|AC055769_6 copia-type polyprotein, putative; 28768... 86 4e-15
>emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]
Length = 1430
Score = 95.5 bits (236), Expect = 7e-18
Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 4/134 (2%)
Frame = -3
Query: 392 NGIFVLNSINNAECHLTLAEE---SDMWHKRFGHANFKSLKKLKLETMEGPKIKVKDGNT 222
N +F L +++ E H + +E S++WH R+GH N K LK L + M K+ N
Sbjct: 525 NKLFPLE-VSSIEKHALVVKETSESNLWHLRYGHLNVKGLKLLSKKEMVFELPKIDSVNV 583
Query: 221 YEGFLAVKLHKFPYLE-RKWRCSKKLQTLHSDICGPIQPMSFGGKHYILTFTDDFSMMTW 45
EG + K K P+ + R R S L+ +H+D+CGP+Q SFGG Y L FTDD S M+W
Sbjct: 584 CEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSW 643
Query: 44 TFVIKSKDEVYRKF 3
+ ++SK E + F
Sbjct: 644 VYFLQSKAETFETF 657
>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 95.1 bits (235), Expect = 9e-18
Identities = 55/137 (40%), Positives = 75/137 (54%), Gaps = 4/137 (2%)
Frame = -3
Query: 401 LEQNGIFVLNSINN-AEC-HLTLAEESDMWHKRFGHANFKSLKKL-KLETMEGPKIKVKD 231
+ +N +FVLN N+ A+C + EES +WH RFGH NF L+ L + E + G
Sbjct: 439 MSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHP 498
Query: 230 GNTYEGFLAVKLHKFPY-LERKWRCSKKLQTLHSDICGPIQPMSFGGKHYILTFTDDFSM 54
EG L K K + E R K L+ +H+D+CGPI+P S G +Y L F DDFS
Sbjct: 499 NQVCEGCLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSR 558
Query: 53 MTWTFVIKSKDEVYRKF 3
TW + +K K EV+ F
Sbjct: 559 KTWVYFLKEKSEVFEIF 575
>emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]
Length = 1274
Score = 95.1 bits (235), Expect = 9e-18
Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 4/134 (2%)
Frame = -3
Query: 392 NGIFVLNSINNAECHLTLAEE---SDMWHKRFGHANFKSLKKLKLETMEGPKIKVKDGNT 222
N +F L +++ E H + +E S++WH R+GH N K LK L + M K+ N
Sbjct: 414 NKLFPLE-VSSIEKHALVVKETSESNLWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVNV 472
Query: 221 YEGFLAVKLHKFPYLE-RKWRCSKKLQTLHSDICGPIQPMSFGGKHYILTFTDDFSMMTW 45
EG + K K P+ + R R S L+ +H+D+CGP+Q SFGG Y L FTDD S M+W
Sbjct: 473 CEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSW 532
Query: 44 TFVIKSKDEVYRKF 3
+ ++SK E + F
Sbjct: 533 VYFLQSKAETFETF 546
>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
Length = 1472
Score = 95.1 bits (235), Expect = 9e-18
Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 4/134 (2%)
Frame = -3
Query: 392 NGIFVLNSINNAECHLTLAEE---SDMWHKRFGHANFKSLKKLKLETMEGPKIKVKDGNT 222
N +F L +++ E H + +E S++WH R+GH N K LK L + M K+ N
Sbjct: 399 NKLFPLE-VSSIEKHALVVKETSESNLWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVNV 457
Query: 221 YEGFLAVKLHKFPYLE-RKWRCSKKLQTLHSDICGPIQPMSFGGKHYILTFTDDFSMMTW 45
EG + K K P+ + R R S L+ +H+D+CGP+Q SFGG Y L FTDD S M+W
Sbjct: 458 CEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSW 517
Query: 44 TFVIKSKDEVYRKF 3
+ ++SK E + F
Sbjct: 518 VYFLQSKAETFETF 531
>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 94.7 bits (234), Expect = 1e-17
Identities = 55/137 (40%), Positives = 75/137 (54%), Gaps = 4/137 (2%)
Frame = -3
Query: 401 LEQNGIFVLNSINN-AEC-HLTLAEESDMWHKRFGHANFKSLKKL-KLETMEGPKIKVKD 231
+ +N +FVLN N+ A+C + EES +WH RFGH NF L+ L + E + G
Sbjct: 439 MSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHP 498
Query: 230 GNTYEGFLAVKLHKFPY-LERKWRCSKKLQTLHSDICGPIQPMSFGGKHYILTFTDDFSM 54
EG L K K + E R K L+ +H+D+CGPI+P S G +Y L F DDFS
Sbjct: 499 NQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSR 558
Query: 53 MTWTFVIKSKDEVYRKF 3
TW + +K K EV+ F
Sbjct: 559 KTWVYFLKEKSEVFEIF 575
>gb|ABR16307.1| unknown [Picea sitchensis]
Length = 407
Score = 94.7 bits (234), Expect = 1e-17
Identities = 52/139 (37%), Positives = 77/139 (55%), Gaps = 5/139 (3%)
Frame = -3
Query: 404 GLEQNGIFVLNSINNAECHLTLAEE--SDMWHKRFGHANFKSLKKLK-LETMEG-PKIKV 237
G +NG++ + E L + S +WH+R GH N+KSL +K E + G PKI
Sbjct: 45 GYVENGLYKFGRFTSNEKALVAEVDNVSRLWHERMGHLNYKSLSLMKRFEMVYGLPKISQ 104
Query: 236 KDGNTYEGFLAVKLHKFPYLERK-WRCSKKLQTLHSDICGPIQPMSFGGKHYILTFTDDF 60
G EG ++ K H +++ K WR L +HSD+ GP++ S G Y+LTF DD+
Sbjct: 105 SQG-VCEGCMSGKQHMEKFIKGKSWRAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDY 163
Query: 59 SMMTWTFVIKSKDEVYRKF 3
S W + +K+KDEV+ KF
Sbjct: 164 SRRIWVYFLKNKDEVFEKF 182
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
Length = 1352
Score = 94.7 bits (234), Expect = 1e-17
Identities = 55/137 (40%), Positives = 75/137 (54%), Gaps = 4/137 (2%)
Frame = -3
Query: 401 LEQNGIFVLNSINN-AEC-HLTLAEESDMWHKRFGHANFKSLKKL-KLETMEGPKIKVKD 231
+ +N +FVLN N+ A+C + EES +WH RFGH NF L+ L + E + G
Sbjct: 439 MSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHP 498
Query: 230 GNTYEGFLAVKLHKFPY-LERKWRCSKKLQTLHSDICGPIQPMSFGGKHYILTFTDDFSM 54
EG L K K + E R K L+ +H+D+CGPI+P S G +Y L F DDFS
Sbjct: 499 NQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSR 558
Query: 53 MTWTFVIKSKDEVYRKF 3
TW + +K K EV+ F
Sbjct: 559 KTWVYFLKEKSEVFEIF 575
>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
Length = 1352
Score = 94.7 bits (234), Expect = 1e-17
Identities = 55/137 (40%), Positives = 75/137 (54%), Gaps = 4/137 (2%)
Frame = -3
Query: 401 LEQNGIFVLNSINN-AEC-HLTLAEESDMWHKRFGHANFKSLKKL-KLETMEGPKIKVKD 231
+ +N +FVLN N+ A+C + EES +WH RFGH NF L+ L + E + G
Sbjct: 439 MSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHP 498
Query: 230 GNTYEGFLAVKLHKFPY-LERKWRCSKKLQTLHSDICGPIQPMSFGGKHYILTFTDDFSM 54
EG L K K + E R K L+ +H+D+CGPI+P S G +Y L F DDFS
Sbjct: 499 NQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSR 558
Query: 53 MTWTFVIKSKDEVYRKF 3
TW + +K K EV+ F
Sbjct: 559 KTWVYFLKEKSEVFEIF 575
>emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]
Length = 1183
Score = 93.2 bits (230), Expect = 3e-17
Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 4/134 (2%)
Frame = -3
Query: 392 NGIFVLNSINNAECHLTLAEE---SDMWHKRFGHANFKSLKKLKLETMEGPKIKVKDGNT 222
N +F L +++ E H + +E S++WH R+GH N K LK L + M K+ N
Sbjct: 348 NKLFPLE-VSSIEKHALVVKETSESNLWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVNV 406
Query: 221 YEGFLAVKLHKFPYLE-RKWRCSKKLQTLHSDICGPIQPMSFGGKHYILTFTDDFSMMTW 45
EG + K K P+ + R R S L+ +H+D+CGP+Q SFGG Y L FT+D S M+W
Sbjct: 407 CEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTNDHSRMSW 466
Query: 44 TFVIKSKDEVYRKF 3
+ ++SK E + F
Sbjct: 467 VYFLQSKAETFETF 480
>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1272
Score = 92.8 bits (229), Expect = 4e-17
Identities = 54/137 (39%), Positives = 74/137 (54%), Gaps = 4/137 (2%)
Frame = -3
Query: 401 LEQNGIFVLNSINN-AEC-HLTLAEESDMWHKRFGHANFKSLKKL-KLETMEGPKIKVKD 231
+ +N +FVLN N+ A+C + EES +WH RFGH NF L+ L + E + G
Sbjct: 439 MSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHP 498
Query: 230 GNTYEGFLAVKLHKFPY-LERKWRCSKKLQTLHSDICGPIQPMSFGGKHYILTFTDDFSM 54
EG L K + E R K L+ +H+D+CGPI+P S G +Y L F DDFS
Sbjct: 499 NQVCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSR 558
Query: 53 MTWTFVIKSKDEVYRKF 3
TW + +K K EV+ F
Sbjct: 559 KTWVYFLKEKSEVFEIF 575
>gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 822
Score = 91.3 bits (225), Expect = 1e-16
Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 4/134 (2%)
Frame = -3
Query: 392 NGIFVLNSINNAECHLTLAEES-DMWHKRFGHANFKSLKKLKLETMEG--PKIKVKDGNT 222
N F L ++N E + +E+ ++WHKR GH +LK L+ + M PK V++G
Sbjct: 135 NKSFHLRWLSNEETAMVAKDEATELWHKRLGHTGHSNLKILQSKEMVTGLPKFNVEEGKC 194
Query: 221 YEGFLAVKLHKFPY-LERKWRCSKKLQTLHSDICGPIQPMSFGGKHYILTFTDDFSMMTW 45
E + K + P+ E + R KL+ +HSD+CGP+Q S G YILTF DD + M W
Sbjct: 195 -ESCILSKHSRDPFPKESETRAKHKLELIHSDVCGPMQNSSINGSRYILTFIDDATRMVW 253
Query: 44 TFVIKSKDEVYRKF 3
+ +K+K EV++ F
Sbjct: 254 VYFLKAKSEVFQTF 267
>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1499
Score = 90.9 bits (224), Expect = 2e-16
Identities = 49/119 (41%), Positives = 66/119 (55%), Gaps = 8/119 (6%)
Frame = -3
Query: 335 EESDMWHKRFGHANFKSLKKLKLETMEGPKI--KVKDGNTYEGFLAV------KLHKFPY 180
E++D+WHKRFGH N+ K+ETM+ KI K+ +G A FP
Sbjct: 452 EQTDLWHKRFGHVNYD-----KIETMQTLKIVEKLPKFEVIKGICAACEMGKQSRRSFPK 506
Query: 179 LERKWRCSKKLQTLHSDICGPIQPMSFGGKHYILTFTDDFSMMTWTFVIKSKDEVYRKF 3
+ +K L+ +HSD+CGP+Q S G Y LTF DDFS MTW + +K+K EV KF
Sbjct: 507 KSQS-NTNKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVYFLKNKSEVITKF 564
>emb|CAN66871.1| hypothetical protein VITISV_021425 [Vitis vinifera]
Length = 338
Score = 90.5 bits (223), Expect = 2e-16
Identities = 52/138 (37%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Frame = -3
Query: 401 LEQNGIF--VLNSINNAECHLTLAEESDMWHKRFGHANFKSLKKLKLETM-EGPKIKVKD 231
+E+N F V N + EE+ +WH+RFGH NF SLK L M +G +++
Sbjct: 159 MEKNRSFPIVFKYAENVALRMEDVEEAWLWHRRFGHLNFNSLKMLYQRKMVQGLPNTIEE 218
Query: 230 GNTY-EGFLAVKLHKFPYLER-KWRCSKKLQTLHSDICGPIQPMSFGGKHYILTFTDDFS 57
N +G K H+ +L+ WR K L+ +H+DICGP+ S G Y + F DDF+
Sbjct: 219 KNEVCDGCALGKHHRQSFLKGVAWRAKKVLELIHTDICGPMSIPSQGNNKYFVLFIDDFT 278
Query: 56 MMTWTFVIKSKDEVYRKF 3
MTW F +K K EV+ F
Sbjct: 279 RMTWVFFMKQKSEVFSIF 296
>emb|CAN79116.1| hypothetical protein VITISV_002093 [Vitis vinifera]
Length = 1109
Score = 90.1 bits (222), Expect = 3e-16
Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 4/127 (3%)
Frame = -3
Query: 392 NGIFVLNSINNAECHLTLAEE---SDMWHKRFGHANFKSLKKLKLETMEGPKIKVKDGNT 222
N +F L +++ E H + +E S++WH R+GH N K LK L + M K+ N
Sbjct: 400 NKLFPLE-VSSIEKHALVVKETSESNLWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVNV 458
Query: 221 YEGFLAVKLHKFPYLE-RKWRCSKKLQTLHSDICGPIQPMSFGGKHYILTFTDDFSMMTW 45
EG + K K P+ + R R S L+ +H+D+CGP+Q SFGG Y L FTDD S M+W
Sbjct: 459 CEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQIASFGGSRYFLLFTDDHSRMSW 518
Query: 44 TFVIKSK 24
+ ++SK
Sbjct: 519 VYFLQSK 525
>ref|XP_006590044.1| PREDICTED: uncharacterized protein LOC102665857 [Glycine max]
Length = 678
Score = 89.7 bits (221), Expect = 4e-16
Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 4/137 (2%)
Frame = -3
Query: 401 LEQNGIFVLNSINNA-EC-HLTLAEESDMWHKRFGHANFKSLKKLKLETM--EGPKIKVK 234
+ +N +F+LN N+ +C + S +WH RFGH NF L++L + M + P I
Sbjct: 356 MSKNRMFLLNIQNDVGKCLKACYTDSSWLWHLRFGHLNFDGLERLAKKEMVRDLPSINHP 415
Query: 233 DGNTYEGFLAVKLHKFPYLERKWRCSKKLQTLHSDICGPIQPMSFGGKHYILTFTDDFSM 54
D + + K E R +K L+ +H+D+CGPI+P SFG Y L F DD+S
Sbjct: 416 DQLCERCLIGKQFRKSFPKESTTRATKPLELIHTDVCGPIKPNSFGKNKYFLLFIDDYSR 475
Query: 53 MTWTFVIKSKDEVYRKF 3
TW + +K K EV+ F
Sbjct: 476 KTWVYFLKEKSEVFENF 492
>emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]
Length = 1283
Score = 89.4 bits (220), Expect = 5e-16
Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
Frame = -3
Query: 392 NGIFVLNSINNAE-CHLT-LAEESDMWHKRFGHANFKSLKKLKLETM-EGPKIKVKDGNT 222
N +F L N + C T L +E +WH R+GH NF LK L+ + M G
Sbjct: 400 NRMFPLYLDNTTQNCFSTKLMDEGWLWHFRYGHLNFGGLKTLQQKNMVTGLPPIXTPSQI 459
Query: 221 YEGFLAVKLHKFPYLERK-WRCSKKLQTLHSDICGPIQPMSFGGKHYILTFTDDFSMMTW 45
E + K H++ + + K WR +K L+ +HSDICGPI P S GGK Y +TF D+S TW
Sbjct: 460 CEECVVGKQHRYQFPKGKSWRXNKVLELVHSDICGPINPTSNGGKRYFITFIXDYSXKTW 519
Query: 44 TFVIKSKDEVYRKF 3
+ ++ K E + F
Sbjct: 520 VYFLQEKSEAFSTF 533
>emb|CAN71445.1| hypothetical protein VITISV_042489 [Vitis vinifera]
Length = 1246
Score = 89.4 bits (220), Expect = 5e-16
Identities = 46/116 (39%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Frame = -3
Query: 341 LAEESDMWHKRFGHANFKSLKKLKLETMEG--PKIKVKDGNTYEGFLAVKLHKFPYLERK 168
L +E +WH R+GH NF LK L+ + M P I+ E + K H++ + + K
Sbjct: 419 LMDEGWLWHFRYGHLNFXXLKTLQXKNMVTGLPXIQTXS-QICEECVXGKQHRYQFPKGK 477
Query: 167 -WRCSKKLQTLHSDICGPIQPMSFGGKHYILTFTDDFSMMTWTFVIKSKDEVYRKF 3
WR +K L+ +HSDICGPI P S GGK Y +TF D+S TW + ++ K E + F
Sbjct: 478 SWRXNKVLELVHSDICGPINPTSNGGKRYFITFIXDYSWKTWVYFLQEKSEAFSTF 533
>gb|AAT38797.2| Polyprotein, putative [Solanum demissum]
Length = 1793
Score = 87.0 bits (214), Expect = 2e-15
Identities = 43/117 (36%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Frame = -3
Query: 347 LTLAEESDMWHKRFGHANFKSLKKLKL-ETMEGPKIKVKDGNTYEGFLAVKLHKFPYLER 171
+TL +++WHKRFGH N +S+ ++K E +E + + E K K P+
Sbjct: 560 ITLQTCTNLWHKRFGHFNLRSIAEMKKKELVENMPEFLSNAQVCETCQQGKQTKLPFQAN 619
Query: 170 K-WRCSKKLQTLHSDICGPIQPMSFGGKHYILTFTDDFSMMTWTFVIKSKDEVYRKF 3
+ WR ++KLQ +H+D+CGPI+ S G Y L F DD++ M W + I+ K EV+ F
Sbjct: 620 QVWRANQKLQLIHTDVCGPIKTDSLSGNKYFLLFIDDYTRMCWVYFIRLKSEVFDVF 676
>dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana]
gi|13872710|emb|CAC37622.1| polyprotein [Arabidopsis
thaliana]
Length = 1334
Score = 86.3 bits (212), Expect = 4e-15
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Frame = -3
Query: 353 CHLTLAEESDMWHKRFGHANFKSLKKL-KLETMEG-PKIKVKDGNTYEGFL--AVKLHKF 186
C + + ++MWHKRFGH N + L+ L + E ++G PK + + ++ +
Sbjct: 424 CLQVIGKANNMWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRES 483
Query: 185 PYLERKWRCSKKLQTLHSDICGPIQPMSFGGKHYILTFTDDFSMMTWTFVIKSKDEVYRK 6
E W+ ++ LQ +H+DICGPI P S GK YIL F DDFS WT+++ K E ++
Sbjct: 484 IPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQF 543
Query: 5 F 3
F
Sbjct: 544 F 544
>gb|AAG51247.1|AC055769_6 copia-type polyprotein, putative; 28768-32772 [Arabidopsis
thaliana]
Length = 1334
Score = 86.3 bits (212), Expect = 4e-15
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Frame = -3
Query: 353 CHLTLAEESDMWHKRFGHANFKSLKKL-KLETMEG-PKIKVKDGNTYEGFL--AVKLHKF 186
C + + ++MWHKRFGH N + L+ L + E ++G PK + + ++ +
Sbjct: 424 CLQVIGKANNMWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRES 483
Query: 185 PYLERKWRCSKKLQTLHSDICGPIQPMSFGGKHYILTFTDDFSMMTWTFVIKSKDEVYRK 6
E W+ ++ LQ +H+DICGPI P S GK YIL F DDFS WT+++ K E ++
Sbjct: 484 IPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQF 543
Query: 5 F 3
F
Sbjct: 544 F 544