BLASTX nr result
ID: Ephedra26_contig00018017
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00018017
(1197 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E sub... 213 2e-52
gb|EMT23234.1| DNA-directed RNA polymerase II subunit RPB1-B [Ae... 207 7e-51
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub... 206 2e-50
gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indi... 206 2e-50
ref|XP_006836567.1| hypothetical protein AMTR_s00131p00068700 [A... 205 3e-50
ref|XP_004951807.1| PREDICTED: DNA-directed RNA polymerase E sub... 205 3e-50
ref|XP_006646896.1| PREDICTED: DNA-directed RNA polymerase V sub... 204 4e-50
gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus... 202 2e-49
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin... 201 5e-49
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub... 200 1e-48
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub... 199 1e-48
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac... 199 1e-48
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no... 199 2e-48
gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus pe... 198 3e-48
gb|EMT07542.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi... 197 9e-48
gb|EOY19811.1| DNA-directed RNA polymerase E subunit 1, putative... 193 1e-46
gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative... 193 1e-46
gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japo... 193 1e-46
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 192 2e-46
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag... 191 5e-46
>ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Brachypodium
distachyon]
Length = 1935
Score = 213 bits (541), Expect = 2e-52
Identities = 138/390 (35%), Positives = 211/390 (54%), Gaps = 13/390 (3%)
Frame = -2
Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISKLIRYMGVGSYQTN-- 1014
AL+ L++L+ +L+E+L GFSVS++DF +P K L E+ K I+ + Q+
Sbjct: 580 ALQFLNALQPLLMEYLLLDGFSVSLQDFNVP-----KVLLEEVHKSIQEQSLVLEQSRCS 634
Query: 1013 ----ILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGK 846
+ +V+ +KD++ +I + S+ +ID S S S++VQQ+GF+G+Q +
Sbjct: 635 KSQFVEMRVDNNLKDVKQQISDFVVESSHLGLLIDPKSEPSMSKVVQQLGFVGLQLYREG 694
Query: 845 NAIPSDWQKRLHTRLPCGESSFLQEY-----EVESPEVHGFITSSFISGLNPCEAFIHSV 681
S + SSF+ ++ PE +G + +S+ GLNP E +HS+
Sbjct: 695 KFYSSRLVEDCF-------SSFVDKHPPIVGNQHPPEAYGLVQNSYFHGLNPYEELVHSI 747
Query: 680 HSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXX 501
+RE ++ GL EPG LFKNLMA LRDV +CYDGTVRN C N ++Q +Y + D
Sbjct: 748 STREAIVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNICSNSIMQLKYNEDDAT--- 804
Query: 500 XXXXSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGV 321
TPG+PVG+LAAT+I++PAYKA DAS + S W ++E L+ + +
Sbjct: 805 ------DIPSALTPGEPVGVLAATAISNPAYKAVLDASQSNNTS-WASMKEILQTKVSYK 857
Query: 320 LKHRDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNI 141
DRKV+L++ +C KKF C EK A +Q+ LK+ LE A +I
Sbjct: 858 NDTNDRKVILFLNDCS-----CPKKF---------CKEKAAIAVQNRLKRVTLEDCATDI 903
Query: 140 FVEYQERWFD--AELRAPLLGHIQLDAKRL 57
+EY ++ D +E L+GHI L+ RL
Sbjct: 904 CIEYHKQILDGSSEATPALVGHIHLEKARL 933
>gb|EMT23234.1| DNA-directed RNA polymerase II subunit RPB1-B [Aegilops tauschii]
Length = 2017
Score = 207 bits (527), Expect = 7e-51
Identities = 134/394 (34%), Positives = 214/394 (54%), Gaps = 11/394 (2%)
Frame = -2
Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISK---LIRYMGVGSYQT 1017
AL+ L++L+ +L+E+L GFSVS++DF +P L + E K L+ S
Sbjct: 695 ALKFLNALQPLLMEFLLLDGFSVSLQDFSVPKP--LLEEAQECIKKQSLVLEQSRCSSSQ 752
Query: 1016 NILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQF-----FH 852
++ ++V+ +KD++ +I + S+ +ID S S S++VQQ+ F+G Q F+
Sbjct: 753 SVETRVDNNLKDVKQQIADFVVKSSRLGLLIDPKSDSSVSKVVQQLAFVGPQLYREGKFY 812
Query: 851 GKNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSR 672
+ + + ++ P +++ PE +G + S++ GLNP E +HS+ +R
Sbjct: 813 SRRLVDDCFSSFVNRHPP------IEDGVQHPPEAYGLVQSAYFHGLNPYEELVHSICTR 866
Query: 671 EGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXX 492
E ++ GL EPG LFK+LMA LRDV +CYDGTVRN C N ++Q +Y + DD
Sbjct: 867 ETIVRSSRGLTEPGTLFKSLMAILRDVVICYDGTVRNICSNSIMQLKYKEEDDT------ 920
Query: 491 XSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKH 312
F PG+PVG+LAAT+I++PAYK D+S + S WE+++E LK + +
Sbjct: 921 ---DFPSAIAPGEPVGVLAATAISNPAYKTVLDSSQSNNTS-WELMKEILKTKVSYKNDA 976
Query: 311 RDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVE 132
+DRKV+L++ +C KKF C EK A +Q LK+ LE A +I +E
Sbjct: 977 KDRKVILFLNDCS-----CPKKF---------CKEKAAIAVQGCLKRVTLEDCATDICIE 1022
Query: 131 YQER-WFDA--ELRAPLLGHIQLDAKRLMGASLS 39
Y+++ DA E +GHI L+ L ++S
Sbjct: 1023 YKKQVSLDAISEATPAFVGHIHLEKAHLEKINVS 1056
>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1991
Score = 206 bits (523), Expect = 2e-50
Identities = 141/396 (35%), Positives = 217/396 (54%), Gaps = 11/396 (2%)
Frame = -2
Query: 1196 SERALECLHSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSY 1023
+E L +S++ +L+E L S GFSV +EDF LP ++ ++ L EIS L+ +M Y
Sbjct: 593 AEDVLSFFNSMQPLLMENLFSEGFSVGLEDFALPRASIQDIQKGLKEISPLLFHMRT-VY 651
Query: 1022 QTNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGKN 843
+ Q+E ++ ++ + I +S++ +ID S + +++VQQVGFLG Q +
Sbjct: 652 NELVEMQLENHIRKVKEPVSNFILNSSALGDLIDSKSDSAMNKVVQQVGFLGRQLYD--- 708
Query: 842 AIPSDWQKRLHTRLPCGESSFLQEYEVESPEVH------GFITSSFISGLNPCEAFIHSV 681
Q +L+++ + S L + + S V G + F+ GL+P E IHS+
Sbjct: 709 ------QGKLYSKTLVEDVSSLYQNKYPSDIVDYPSAEFGLVHRGFVHGLDPVEGMIHSI 762
Query: 680 HSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXX 501
+RE ++ GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG +G
Sbjct: 763 ATREVIVRSSRGLSEPGTLFKNLMATLRDVVICYDGTVRNVCSNSIIQFEYGVKSGSGP- 821
Query: 500 XXXXSGHFVEKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNG 324
E P G+PVG+LAAT++++PAYKA D ST S S W++++E L + N
Sbjct: 822 ---------ENLFPAGEPVGVLAATAMSNPAYKAVLD-STPSSNSSWDLMKEILLCKVNF 871
Query: 323 VLKHRDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVN 144
+ DR+VVLY+ N CG G +K+ C E A +++ LKK L+ AV
Sbjct: 872 KNELIDRRVVLYL-NDCGCG----RKY---------CREHAAYLVKNRLKKVSLKDTAVE 917
Query: 143 IFVEYQERWF--DAELRAPLLGHIQLDAKRLMGASL 42
+EYQ+ E+ + L+GH+ L+ L +L
Sbjct: 918 FMIEYQKERAAGSMEIDSGLVGHVHLNEMLLRELNL 953
>gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indica Group]
Length = 1867
Score = 206 bits (523), Expect = 2e-50
Identities = 135/394 (34%), Positives = 211/394 (53%), Gaps = 11/394 (2%)
Frame = -2
Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISKLIRYMGVGSYQTN-- 1014
AL+ L+ L+ +L+E + GFSVS++DF +P L+ I K + + N
Sbjct: 600 ALQFLNVLQPLLMELILLDGFSVSLQDFNVP-KVLLEEAQKNIEKQSLILEQSRFAENQV 658
Query: 1013 ILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGKNAIP 834
+ +V+ +KD++ +I + + +ID S S S++VQQ+GF+G+Q +
Sbjct: 659 VEMRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYR------ 712
Query: 833 SDWQKRLHTRLPCGES--SFLQEY----EVESPEVHGFITSSFISGLNPCEAFIHSVHSR 672
+ + ++R + +F+ ++ E SPE +G + SS+ GLNP E +H++ +R
Sbjct: 713 ---EGKFYSRRLVEDCYYTFVNKHPAVREEHSPEAYGLVRSSYFHGLNPYEELVHAISTR 769
Query: 671 EGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXX 492
E ++ GL EPG LFKNLMA LRDV +CYDGTVRN C ++Q Y + D
Sbjct: 770 EAIVRSSRGLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLNYTEDD-------- 821
Query: 491 XSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKH 312
+ F PG+PVG+LAAT+I++PAYKA DAS + S WE ++E L+
Sbjct: 822 -ALDFPSAIGPGEPVGVLAATAISNPAYKAVLDASQSNNTS-WERMKEILQTTSRYKNDM 879
Query: 311 RDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVE 132
+DRKV+L++ +C A KKF C EK A +Q L++ LE A +I +E
Sbjct: 880 KDRKVILFLNDCSCA-----KKF---------CKEKAAIAVQGCLRRITLEDCATDICIE 925
Query: 131 YQERW---FDAELRAPLLGHIQLDAKRLMGASLS 39
YQ++ +E L+GHI LD L ++S
Sbjct: 926 YQKQIGLDGTSEAAPALVGHIHLDRAHLERINIS 959
>ref|XP_006836567.1| hypothetical protein AMTR_s00131p00068700 [Amborella trichopoda]
gi|548839106|gb|ERM99420.1| hypothetical protein
AMTR_s00131p00068700 [Amborella trichopoda]
Length = 1916
Score = 205 bits (521), Expect = 3e-50
Identities = 137/392 (34%), Positives = 213/392 (54%), Gaps = 7/392 (1%)
Frame = -2
Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSYQ 1020
+ AL+ +SL+ + +E L G+S+ + DF +P +K+ + IS L+++M +
Sbjct: 605 KEALKVFNSLQPLFMEILFMEGYSIGLGDFNVPKPIMDHIKSKIKSISPLLKHMRSTDNE 664
Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGKNA 840
I SQV + + D + I++ I S+S +ID +SS++ +++V+Q+GFLG+Q F
Sbjct: 665 L-IESQVAKSLDDAKLPIVKFILKSSSLGGLIDSSSSQAVNKVVEQIGFLGLQLFSRGKY 723
Query: 839 IPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSREGLL 660
D L + + + +Y ES G I S GLNP E ++SV REG +
Sbjct: 724 YTKDLVDDLISFIQSKHVAKGFDYPTES---FGLIKSCLFHGLNPYEELVYSVSVREGSV 780
Query: 659 SQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXSGH 480
GL EPG+LFK+LMA LRDV +CYDGTVRN C N LVQF+YG G
Sbjct: 781 RSSKGLSEPGILFKHLMAVLRDVVICYDGTVRNVCSNLLVQFEYG-----GNRKTVDV-- 833
Query: 479 FVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRDRK 300
++ G+PVGILAAT++++PAY A +S+Q + S W +++E L + N + DR+
Sbjct: 834 ---SASAGEPVGILAATAVSNPAYAAVL-SSSQSNTSSWNLMKEILFCKQNSSEELDDRR 889
Query: 299 VVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEYQE 123
VV+Y+++C CG KK+ C E +A +Q LK L+ F FV Y
Sbjct: 890 VVVYLQDCHCG------KKY---------CKENMACMVQRHLKGVPLKDFTAEFFVVYDN 934
Query: 122 RWFDA----ELRAPLLGHIQLDAKRLMGASLS 39
+ ++ A L+GHI LD +L G +++
Sbjct: 935 QIPTTSEIRQIEANLVGHIHLDKMQLSGLNVT 966
>ref|XP_004951807.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Setaria
italica]
Length = 2038
Score = 205 bits (521), Expect = 3e-50
Identities = 132/392 (33%), Positives = 208/392 (53%), Gaps = 9/392 (2%)
Frame = -2
Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISKLIRYMGVGSYQTNIL 1008
AL+ L+ L+ +L+E+L GFSV+++DF +P K L E+ K I+ + Q+
Sbjct: 601 ALQFLNVLQPLLMEFLLLDGFSVTLKDFNVP-----KAILEEVHKNIQKQSLILEQSRFS 655
Query: 1007 S------QVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGK 846
+VE +K ++ +I + + +ID S S++VQQ+GF+G+Q +H
Sbjct: 656 KSQIAEMRVENNLKGVKQQISEFVIKCSDLGLLIDPKKEASMSKVVQQLGFVGLQLYHEG 715
Query: 845 NAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSREG 666
S + + S E+ PE +G + SS+ GLNP E +HS+ +RE
Sbjct: 716 KLYSSRLVEDCFSNFVNKHSDIGDEHP---PEAYGLVQSSYFHGLNPYEELVHSISTREA 772
Query: 665 LLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXS 486
++ GL EPG LFKNLMA LRDV +CYDGTVRN C N ++Q +Y + D+
Sbjct: 773 IVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNTCSNSIIQLKYKEDDET-------- 824
Query: 485 GHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRD 306
F PG+PVG+LAAT+I++PAY+A D+S + S WE ++E L+ + +D
Sbjct: 825 -DFPSALPPGEPVGVLAATAISTPAYRAVLDSSQSNNAS-WESMKEILQTKVGYKNDMKD 882
Query: 305 RKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEYQ 126
RKV+L++ +C KKF C E+ A +Q L++ L A +I +E+Q
Sbjct: 883 RKVILFLNDCS-----CPKKF---------CKERAALTVQSCLRRVTLADCATDISIEHQ 928
Query: 125 ERW---FDAELRAPLLGHIQLDAKRLMGASLS 39
++ +E L+GHI LD +L ++S
Sbjct: 929 KQINLDETSEAAPTLVGHIHLDKAQLERINIS 960
>ref|XP_006646896.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Oryza
brachyantha]
Length = 1993
Score = 204 bits (520), Expect = 4e-50
Identities = 135/398 (33%), Positives = 212/398 (53%), Gaps = 15/398 (3%)
Frame = -2
Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISKLIRYMGVGSYQTN-- 1014
AL+ L+ L+ +L+E + GFSVS++DF +P K L E K I + Q+
Sbjct: 600 ALQFLNVLQPLLMELILLDGFSVSLQDFNVP-----KVHLQEAQKNIEKQSIILEQSRCA 654
Query: 1013 ----ILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGK 846
+ +V+ +KD++ +I + + +ID S S S++VQQ+GF+G+Q +
Sbjct: 655 ENQFVEMRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDPSVSKVVQQLGFVGLQLYR-- 712
Query: 845 NAIPSDWQKRLHTRLPCGE--SSFLQEYEV----ESPEVHGFITSSFISGLNPCEAFIHS 684
+ + ++R + S+F+ ++ SPE +G + SS+ GLNP E +H+
Sbjct: 713 -------EGKFYSRRLVEDCFSNFVNKHPAVRKEHSPEAYGLVRSSYFHGLNPYEELVHA 765
Query: 683 VHSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGX 504
+ +RE ++ GL EPG LFKNLMA LRDV +CYDGTVRN C ++Q +Y + D
Sbjct: 766 ISTREAIVRSSRGLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLKYKEED---- 821
Query: 503 XXXXXSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNG 324
+ F PG+PVG+LAAT+I++PAYKA DAS + S WE ++E L+
Sbjct: 822 -----ALDFPSAIAPGEPVGVLAATAISNPAYKAVLDASQSNNTS-WERMKEILQTTTRY 875
Query: 323 VLKHRDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVN 144
+DRK++L++ +C A KKF C EK A +Q L++ LE A +
Sbjct: 876 KNDTKDRKIILFLNDCSCA-----KKF---------CKEKAAIAVQGCLRRITLEDCATD 921
Query: 143 IFVEYQERWF---DAELRAPLLGHIQLDAKRLMGASLS 39
I +EYQ++ +E L+GHI D L ++S
Sbjct: 922 ICIEYQKQISLDGTSEASPALVGHIHFDRAHLERINVS 959
>gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
Length = 2052
Score = 202 bits (515), Expect = 2e-49
Identities = 134/401 (33%), Positives = 206/401 (51%), Gaps = 14/401 (3%)
Frame = -2
Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSYQ 1020
+ AL+ L+ L E + + GFSVS++DF + + + + ++S L+ + Y
Sbjct: 598 KEALKFFDVLQPFLTESIFADGFSVSLQDFSISRATKRIISRSIGKVSSLLHQLR-SIYN 656
Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHG--- 849
+ Q+E+ ++D+++ +I S +ID S + ++VQQ+GFLG Q F
Sbjct: 657 ELVAQQLEKLIRDIEHPVINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRF 716
Query: 848 -KNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSR 672
+ D H + C + E +G + SF +GL+P E +HS+ +R
Sbjct: 717 YSKGLVEDVASHFHVKC-CYDGDGYPSAE------YGLLKGSFFNGLDPYEEMVHSISTR 769
Query: 671 EGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXX 492
E ++ GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG
Sbjct: 770 EVMVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYG----------- 818
Query: 491 XSGHFVEKS----TPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNG 324
+EK+ G+PVG+LAAT++++PAYKA DAS S S WE+++E L + N
Sbjct: 819 -----LEKTEHLFPAGEPVGVLAATAMSNPAYKAVLDAS-PNSNSSWELMKEILLCKVNF 872
Query: 323 VLKHRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAV 147
+ DR+V+LY+ +C CG C E A ++D L+K L+ AV
Sbjct: 873 RNEPVDRRVILYLNDCDCGGNY---------------CRENAAYKVKDQLRKVNLKDAAV 917
Query: 146 NIFVEYQERWF---DAELRAPLLGHIQLDAKRLMGASLSPA 33
+EYQE+ ++E A L+GHI LD L +S A
Sbjct: 918 EFVIEYQEQRIQKGNSETDAGLVGHIYLDEMMLEELKISMA 958
>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
putative [Ricinus communis]
Length = 991
Score = 201 bits (511), Expect = 5e-49
Identities = 138/386 (35%), Positives = 209/386 (54%), Gaps = 8/386 (2%)
Frame = -2
Query: 1172 HSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSYQTNILSQV 999
+SL+ +L+E L S GFSV +EDF + +A + D IS L+ + +Y + Q+
Sbjct: 605 NSLQPLLMESLFSEGFSVGLEDFYISRAAIGGTRRDFKVISSLLSQLR-STYNELMALQL 663
Query: 998 ERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQF-----FHGKNAIP 834
E ++ + + I +S +ID S + +++VQQ+GFLG+Q F+ K +
Sbjct: 664 ENHIRRAKLPVADFIVRLSSIGDLIDYKSDSAMTKVVQQIGFLGLQISDRGKFYTKTLVE 723
Query: 833 SDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSREGLLSQ 654
LH ES + + + S + HG I S F GL+P E +HS+ +RE ++
Sbjct: 724 D---MALHF-----ESKYPSDIDYPSAK-HGLIQSCFFHGLDPYEEMVHSISAREVMVRS 774
Query: 653 KMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXSGHFV 474
GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG +G
Sbjct: 775 TRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYG----------MKAGIKA 824
Query: 473 EKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRDRKV 297
+ P G+PVG+LAAT++++PAYKA D ST S S WE+++E L+ R N DR+V
Sbjct: 825 QSLFPAGEPVGVLAATAMSNPAYKAVLD-STPSSNSSWELMKEILQCRVNFKNDITDRRV 883
Query: 296 VLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEYQERW 117
+LY N CG G F C E++A +++ L+K IL+ A+ EY+ +
Sbjct: 884 ILYF-NYCGCGKF-------------YCQERLAYSVKNHLEKVILKDIALCFMCEYKSQP 929
Query: 116 FDAELRAPLLGHIQLDAKRLMGASLS 39
A+ A L+GH+ L +L ++S
Sbjct: 930 TIAD--AGLVGHVHLKKTKLQELNVS 953
>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
Length = 2020
Score = 200 bits (508), Expect = 1e-48
Identities = 137/399 (34%), Positives = 208/399 (52%), Gaps = 12/399 (3%)
Frame = -2
Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSYQTN 1014
AL+ L+ L+E L + GFSVS+E+F + + ++ + + S L+ Y Y
Sbjct: 601 ALKFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRRSIGKASSLL-YQLRSLYNEL 659
Query: 1013 ILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHG----K 846
+ Q+E+ ++D++ II S +ID S + ++VQQVGFLG Q F
Sbjct: 660 VAQQLEKHIQDVELPIINFALKSTKLGDLIDSKSKSTIDKVVQQVGFLGQQLFDRGRFYS 719
Query: 845 NAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSREG 666
+ D H + C + E +G + F +GL+P E +HS+ +RE
Sbjct: 720 KGLVDDVASHFHAKC-CYDGDGYPSAE------YGLLKGCFFNGLDPYEEMVHSISTREI 772
Query: 665 LLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXS 486
++ GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG +
Sbjct: 773 MVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYG----------IQA 822
Query: 485 GHFVEKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHR 309
G E P G+PVG+LAAT++++PAYKA DAS S S WE+++E L + N +
Sbjct: 823 GDKTEHLFPAGEPVGVLAATAMSNPAYKAVLDAS-PNSNSSWELMKEILLCKVNFRNEPV 881
Query: 308 DRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCC-EKIAAGIQDALKKEILESFAVNIFV 135
DR+V+LY+ +C CG +CC E A +++ L+K L++ AV +
Sbjct: 882 DRRVILYLNDCDCGG----------------SCCRENAAYSVKNQLRKVSLKNAAVEFII 925
Query: 134 EYQERWF---DAELRAPLLGHIQLDAKRLMGASLSPATL 27
EYQ++ ++E A L+GHI LD L +S A +
Sbjct: 926 EYQQQRTQKENSETDAGLVGHIYLDEMMLEELKISMANV 964
>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
Length = 2082
Score = 199 bits (507), Expect = 1e-48
Identities = 135/398 (33%), Positives = 204/398 (51%), Gaps = 11/398 (2%)
Frame = -2
Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSYQ 1020
+ AL L+ L+E L + GFSVS+E+F + + ++ + ++S L+ Y Y
Sbjct: 599 KEALNFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLL-YQLRSLYN 657
Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHG--- 849
+ Q+E+ ++D++ II S +ID S + ++VQQ+GFLG Q F
Sbjct: 658 ELVAQQLEKHIRDVELPIINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRF 717
Query: 848 -KNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSR 672
+ D H + C + E +G + F +GL+P E +HS+ +R
Sbjct: 718 YSKGLVDDVASHFHAKC-CYDGDGYPSAE------YGLLKGCFFNGLDPYEEMVHSISTR 770
Query: 671 EGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXX 492
E ++ GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG
Sbjct: 771 EIMVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYG----------I 820
Query: 491 XSGHFVEKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLK 315
+G E P G+PVG+LAAT++++PAYKA DAS S S WE+++E L + N +
Sbjct: 821 QAGDKSEHLFPAGEPVGVLAATAMSNPAYKAVLDAS-PSSNSSWELMKEILLCKVNFRNE 879
Query: 314 HRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIF 138
DR+V+LY+ +C CG C E A ++D L+K L+ AV
Sbjct: 880 LVDRRVILYLNDCDCGGSY---------------CRENAAYSVKDQLRKVSLKDAAVEFI 924
Query: 137 VEYQERWF---DAELRAPLLGHIQLDAKRLMGASLSPA 33
+EYQ++ ++E L+GHI LD L +S A
Sbjct: 925 IEYQQQRTQKENSETDVGLVGHIYLDEMMLEELKISMA 962
>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
Length = 1902
Score = 199 bits (507), Expect = 1e-48
Identities = 133/393 (33%), Positives = 209/393 (53%), Gaps = 11/393 (2%)
Frame = -2
Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASA--TLKNDLSEISKLIRYMGVGSYQTN 1014
AL+ SL+ +L+E L S GFSVS+ DF P S ++ ++ ++S L+ + S+
Sbjct: 398 ALDFFDSLQPLLMENLFSEGFSVSLHDFFFPKSELQNIQRNIQDLSPLLLQLR-SSFNEL 456
Query: 1013 ILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQF-----FHG 849
+ Q E +++ ++ + I S++ MID S + +IVQQ+GFLG+Q F+
Sbjct: 457 VQVQFENHIREFKSPVGNFILISSALGSMIDSRSDSAIDKIVQQIGFLGLQLSDRRKFYS 516
Query: 848 KNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSRE 669
+ + D H + P + V E GF++ F GL+P E +HS+ +RE
Sbjct: 517 RGLV-EDVASLFHQKYPFAD--------VYPSEEFGFVSRCFFHGLDPYEEIVHSIATRE 567
Query: 668 GLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXX 489
++ GL EPG LFKNLMA LRDV +CYDGTVRN N ++QF+YG
Sbjct: 568 VIVRSSKGLAEPGTLFKNLMAVLRDVVICYDGTVRNISSNSVIQFEYG-----------V 616
Query: 488 SGHFVEKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKH 312
G + P GDPVG+LAAT++++PAYKA D S+ S S W++++E L R N
Sbjct: 617 GGMQSQNLFPAGDPVGVLAATAMSNPAYKAVLD-SSPNSNSSWDMMKEILFCRANFRNDI 675
Query: 311 RDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVE 132
DR+V+LY+ +CC +K+ C E + +++ LKK L A+ + +E
Sbjct: 676 NDRRVILYLNDCC-----CGRKY---------CQENASCLVKNHLKKVSLRDAAIELAIE 721
Query: 131 YQERWFD---AELRAPLLGHIQLDAKRLMGASL 42
Y+ + E+ A L+GHI L++ L + +
Sbjct: 722 YKRPKLEPESCEIDAGLVGHIHLNSGLLKASGI 754
>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
Length = 2054
Score = 199 bits (505), Expect = 2e-48
Identities = 136/386 (35%), Positives = 211/386 (54%), Gaps = 10/386 (2%)
Frame = -2
Query: 1196 SERALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKN---DLSEISKLIRYMGVGS 1026
SE L+ ++L+ +L+E + + GFSV +EDF + + +KN D+ IS L+ ++ +
Sbjct: 598 SEEVLKFFNALQPLLMENIFAQGFSVGLEDFSI-SQEVIKNITKDIQLISPLLYHLR-ST 655
Query: 1025 YQTNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQF---- 858
Y + Q+E ++ + + I S+S +ID S + +++VQQ+GFLG+Q
Sbjct: 656 YNELVELQLENQIRFAKAPVTNFILKSSSMGNLIDPKSDSAINKVVQQIGFLGLQISDRG 715
Query: 857 -FHGKNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSV 681
F+ K + L+TR + + + S E HG I S F GL+P E +HS+
Sbjct: 716 KFYSKTLVED--VSCLYTR------KYPENVDYPSAE-HGLIRSCFFHGLDPYEEIVHSI 766
Query: 680 HSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXX 501
+RE ++ GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG+
Sbjct: 767 STREVIVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGR------- 819
Query: 500 XXXXSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGV 321
G G+PVG+LAAT++++PAYKA D S+ S S WE+++E L +
Sbjct: 820 -----GSARNLYPAGEPVGVLAATAMSNPAYKAVLD-SSPSSNSSWELMKEILLCKAIFR 873
Query: 320 LKHRDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNI 141
+ DR+V+LY+ N CG G +K+ C E+ +Q+ LKK L+ AV
Sbjct: 874 NELIDRRVILYL-NHCGCG----RKY---------CREQATYLVQNQLKKVSLKDTAVEF 919
Query: 140 FVEY--QERWFDAELRAPLLGHIQLD 69
+EY Q + ++ A L+GHI L+
Sbjct: 920 MIEYKNQSSFSAVDMNAGLVGHIHLN 945
>gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
Length = 1855
Score = 198 bits (504), Expect = 3e-48
Identities = 134/392 (34%), Positives = 212/392 (54%), Gaps = 13/392 (3%)
Frame = -2
Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSYQ 1020
E L+ SL+ +L+E L S GFSV +EDF + ++ ++ ++ + S L+ ++ +Y
Sbjct: 598 EDVLKFFDSLQPLLMENLFSEGFSVGLEDFYMSRTSIQDIQKNIQDSSDLLYHLR-STYN 656
Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQF-----F 855
+ Q++ ++ ++ + I S++ +ID S + ++IVQQ+GFLG+Q F
Sbjct: 657 EFVEFQLQNRIRSVKVPVSHFILESSALGDLIDSKSDSAINKIVQQIGFLGLQLSDKGRF 716
Query: 854 HGKNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEV-HGFITSSFISGLNPCEAFIHSVH 678
+ K + D H++ P +++ P +G + S F GL+P EA +HS+
Sbjct: 717 YSKTLV-EDVASLCHSKYPS---------DIDYPSAEYGLVQSCFFHGLDPYEAIVHSIA 766
Query: 677 SREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXX 498
+RE ++ GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG
Sbjct: 767 TREVIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYG--------- 817
Query: 497 XXXSGHFVEKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGV 321
G + P G+PVG+LAAT++++PAYKA D ST S S WE+++E L + N
Sbjct: 818 -VNIGSRPQHLFPAGEPVGVLAATAMSNPAYKAVLD-STPSSNSSWELMKEILLCKVNFK 875
Query: 320 LKHRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVN 144
+ DR+V+LY+ NC CG +K+ C E+ A +++ LKK L+ AV
Sbjct: 876 NELIDRRVILYLNNCGCG------RKY---------CRERAACLVKNQLKKVSLKDTAVE 920
Query: 143 IFVEYQERWFDAEL---RAPLLGHIQLDAKRL 57
+EY + A L+GHI L+ L
Sbjct: 921 FMIEYNNQLSGLGSLINDAGLVGHIHLNEDML 952
>gb|EMT07542.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii]
Length = 817
Score = 197 bits (500), Expect = 9e-48
Identities = 132/391 (33%), Positives = 209/391 (53%), Gaps = 8/391 (2%)
Frame = -2
Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISKLIRYMGVGSYQTNIL 1008
AL+ L++L+ + +E+L GFS++++DF +P L E K + S +
Sbjct: 430 ALKFLNALQPLFMEFLLLDGFSLTLQDFSVPK--LLLEGAQECIKEQSSVFEQSRRCFKS 487
Query: 1007 SQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFH-GK----N 843
V+ +K+++ KI + S+ ++D S S S++VQQ+GF+G+Q +H GK
Sbjct: 488 HSVDYNLKNIKEKISNFVVKSSRLGLLVDPKSDPSMSKVVQQLGFVGLQLYHEGKLYSGR 547
Query: 842 AIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSREGL 663
+ S + ++ P GE +PE +G + SS+ GLNP E +H++ +RE +
Sbjct: 548 LVESCFSNFVNRHPPIGEGI------QHAPEAYGLVQSSYFHGLNPYEELVHAISTRETI 601
Query: 662 LSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXSG 483
+ GL E G LFK LMA LRDV VCYDGTVRN C N ++Q +Y K D +
Sbjct: 602 VRSSRGLPEAGTLFKGLMAILRDVVVCYDGTVRNICSNSIMQLKY-KEDPSAI------- 653
Query: 482 HFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRDR 303
TPG+PVG LAAT+I++PAYK+ DAS + S WE+++E L+ + + ++R
Sbjct: 654 ------TPGEPVGALAATAISNPAYKSVLDASQSNNTS-WELMKEILQTKVSYKNDAKNR 706
Query: 302 KVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEYQE 123
KV+L++ +C KKF C EK A +Q LK+ LE +I +EYQ+
Sbjct: 707 KVILFLNDCS-----CPKKF---------CKEKAAIAVQGCLKRVTLEDCTTDICIEYQK 752
Query: 122 RWF---DAELRAPLLGHIQLDAKRLMGASLS 39
+ +E +GHI L+ + L ++S
Sbjct: 753 QVSLKGTSEATPAFVGHIHLEKEHLEQINVS 783
>gb|EOY19811.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3
[Theobroma cacao]
Length = 1675
Score = 193 bits (491), Expect = 1e-46
Identities = 134/390 (34%), Positives = 210/390 (53%), Gaps = 5/390 (1%)
Frame = -2
Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASA--TLKNDLSEISKLIRYMGVGSYQ 1020
+ L SL+ +L+E + + GFSVS+EDF + ++ D+ +IS L+ Y +Y
Sbjct: 596 KEVLNFFDSLQPLLMENVFAEGFSVSLEDFSVSREVIQNIQKDIQDISPLL-YQLRSTYN 654
Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFH-GKN 843
+ Q+E ++ + + I +S++ +ID S + +++VQQ+GFLG+Q + GK
Sbjct: 655 ELVGLQMENHIRVAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKF 714
Query: 842 AIPSDWQKRLHTRLPCGESSFLQEYEVESPEVH-GFITSSFISGLNPCEAFIHSVHSREG 666
+ K L + S V+ P G I S F GL+P E +HS+ +RE
Sbjct: 715 -----YSKTLVEDVAYQFQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREV 769
Query: 665 LLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXS 486
++ GL EPG LFKNLMA LRDV +CYDGTVRN N ++QFQYG +
Sbjct: 770 IVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNISSNSIIQFQYG-----------LN 818
Query: 485 GHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRD 306
+ G+PVG+LAAT++++PAYKA D ST S S WE+++E L + + D
Sbjct: 819 ARTKPQFPAGEPVGVLAATAMSNPAYKAVLD-STPSSNSSWELMKEILLCKVSLKNDLVD 877
Query: 305 RKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEY 129
R+V+LY+K+C CG +K+ C E A +++ L+K L+ AV + EY
Sbjct: 878 RRVILYLKDCDCG------RKY---------CQENAAYLVKNHLRKVKLKDTAVELIFEY 922
Query: 128 QERWFDAELRAPLLGHIQLDAKRLMGASLS 39
+++ +E A L+GHI L+ L ++S
Sbjct: 923 KQQQTVSESEAGLVGHILLNKAVLKELNIS 952
>gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
[Theobroma cacao] gi|508727913|gb|EOY19810.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao]
Length = 1788
Score = 193 bits (491), Expect = 1e-46
Identities = 134/390 (34%), Positives = 210/390 (53%), Gaps = 5/390 (1%)
Frame = -2
Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASA--TLKNDLSEISKLIRYMGVGSYQ 1020
+ L SL+ +L+E + + GFSVS+EDF + ++ D+ +IS L+ Y +Y
Sbjct: 596 KEVLNFFDSLQPLLMENVFAEGFSVSLEDFSVSREVIQNIQKDIQDISPLL-YQLRSTYN 654
Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFH-GKN 843
+ Q+E ++ + + I +S++ +ID S + +++VQQ+GFLG+Q + GK
Sbjct: 655 ELVGLQMENHIRVAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKF 714
Query: 842 AIPSDWQKRLHTRLPCGESSFLQEYEVESPEVH-GFITSSFISGLNPCEAFIHSVHSREG 666
+ K L + S V+ P G I S F GL+P E +HS+ +RE
Sbjct: 715 -----YSKTLVEDVAYQFQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREV 769
Query: 665 LLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXS 486
++ GL EPG LFKNLMA LRDV +CYDGTVRN N ++QFQYG +
Sbjct: 770 IVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNISSNSIIQFQYG-----------LN 818
Query: 485 GHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRD 306
+ G+PVG+LAAT++++PAYKA D ST S S WE+++E L + + D
Sbjct: 819 ARTKPQFPAGEPVGVLAATAMSNPAYKAVLD-STPSSNSSWELMKEILLCKVSLKNDLVD 877
Query: 305 RKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEY 129
R+V+LY+K+C CG +K+ C E A +++ L+K L+ AV + EY
Sbjct: 878 RRVILYLKDCDCG------RKY---------CQENAAYLVKNHLRKVKLKDTAVELIFEY 922
Query: 128 QERWFDAELRAPLLGHIQLDAKRLMGASLS 39
+++ +E A L+GHI L+ L ++S
Sbjct: 923 KQQQTVSESEAGLVGHILLNKAVLKELNIS 952
>gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japonica Group]
Length = 2017
Score = 193 bits (491), Expect = 1e-46
Identities = 124/360 (34%), Positives = 194/360 (53%), Gaps = 8/360 (2%)
Frame = -2
Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISKLIRYMGVGSYQTN-- 1014
AL+ L+ L+ +L+E + GFSVS++DF +P L+ I K + + N
Sbjct: 600 ALQFLNVLQPLLMELILLDGFSVSLQDFNVP-KVLLEEAQKNIEKQSLILEQSRFAENQV 658
Query: 1013 ILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGKNAIP 834
+ +V+ +KD++ +I + + +ID S S S++VQQ+GF+G+Q +
Sbjct: 659 VEMRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYR------ 712
Query: 833 SDWQKRLHTRLPCGES--SFLQEY----EVESPEVHGFITSSFISGLNPCEAFIHSVHSR 672
+ + ++R + +F+ ++ E SPE +G + SS+ GLNP E +H++ +R
Sbjct: 713 ---EGKFYSRRLVEDCYYTFVNKHPAVREEHSPEAYGLVRSSYFHGLNPYEELVHAISTR 769
Query: 671 EGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXX 492
E ++ GL EPG LFKNLMA LRDV +CYDGTVRN C ++Q Y + D
Sbjct: 770 EAIVRSSRGLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLNYTEDD-------- 821
Query: 491 XSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKH 312
+ F PG+PVG+LAAT+I++PAYKA DAS + S WE ++E L+
Sbjct: 822 -ALDFPSAIGPGEPVGVLAATAISNPAYKAVLDASQSNNTS-WERMKEILQTTSRYKNDM 879
Query: 311 RDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVE 132
+DRKV+L++ +C A KKF C EK A +Q L++ LE A +I +E
Sbjct: 880 KDRKVILFLNDCSCA-----KKF---------CKEKAAIAVQGCLRRITLEDCATDICIE 925
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 192 bits (489), Expect = 2e-46
Identities = 128/391 (32%), Positives = 207/391 (52%), Gaps = 11/391 (2%)
Frame = -2
Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPAS--ATLKNDLSEISKLIRYMGVGSYQ 1020
E L+ SL+ +L+E + S GFSV ++D+ +P + L+ ++ +S L+ Y ++
Sbjct: 625 EEVLKFFDSLQPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLL-YQLRSTFN 683
Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQF-----F 855
+ Q+E ++ ++ I +S K+ D S + +++VQQ+GFLG+Q F
Sbjct: 684 ELVELQLENHLRSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRF 743
Query: 854 HGKNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVH-GFITSSFISGLNPCEAFIHSVH 678
+ K+ I D H R + ++ P G + F GL+P E +HS+
Sbjct: 744 YSKSLI-EDVASLFHNRYSSDK--------IDYPSAEFGLVKGCFFHGLDPYEEMVHSIS 794
Query: 677 SREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXX 498
+RE ++ GL EPG LFKNLMA LRDV +CYDGTVRN C N ++Q +YG
Sbjct: 795 TREVMVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQLEYG--------- 845
Query: 497 XXXSGHFVEKS--TPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNG 324
+G S PG+PVG+LAAT++++PAYKA D ST S S W++++E L + +
Sbjct: 846 -MKAGMMQPYSLFPPGEPVGVLAATAMSTPAYKAVLD-STPSSNSSWDMMKEILLCKVSF 903
Query: 323 VLKHRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAV 147
+ DR+V+LY+ NC CG +K+ C E A ++ LKK L+ A+
Sbjct: 904 KNEPIDRRVILYLNNCACG------RKY---------CNENAAYVVKSHLKKVTLKDAAM 948
Query: 146 NIFVEYQERWFDAELRAPLLGHIQLDAKRLM 54
+ +EY + + L L+GH+ L+ R++
Sbjct: 949 DFMIEYNRQPTPSGLGPGLVGHVHLNRVRML 979
>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
subunit [Medicago truncatula]
Length = 2032
Score = 191 bits (485), Expect = 5e-46
Identities = 131/387 (33%), Positives = 201/387 (51%), Gaps = 8/387 (2%)
Frame = -2
Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASA--TLKNDLSEISKLIRYMGVGSYQ 1020
+ AL ++ L+E + + GFSV ++DF + + + + ++S L+R + G Y+
Sbjct: 681 QEALNFFDVIQPFLMENIFAHGFSVGLQDFSISRAVKRVINRSIGKVSPLLRQLR-GMYK 739
Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGKNA 840
+ Q+E+ ++D++ +I S +ID S + +++QQ+GFLG Q F
Sbjct: 740 ELVAQQLEKVIQDIELPVINFALKSTKLGDLIDSKSKSAVDKVIQQIGFLGQQLFERGKF 799
Query: 839 IPSDWQKRL--HTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSREG 666
+ + H +L C F + + S E G + F GL+P E +HS+ +RE
Sbjct: 800 YSKGLVEDVASHFQLKC----FYDKDDYPSAEF-GLLKGCFFHGLDPYEELVHSIATREI 854
Query: 665 LLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXS 486
+ GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG S
Sbjct: 855 IDRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYG----------IQS 904
Query: 485 GHFVEKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHR 309
G + P G+PVG+LAATS+++PAYKA DAS S S W ++E L + N +
Sbjct: 905 GDAAQHLFPAGEPVGVLAATSMSNPAYKAVLDAS-PSSNSSWGFMKEILLCKVNFRNEPN 963
Query: 308 DRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVE 132
DR+V+LY+ +C CG C E A +Q+ L+K L+ A++ VE
Sbjct: 964 DRRVILYLNDCDCGRNY---------------CRENAAYLVQNQLRKVSLKDAALDFIVE 1008
Query: 131 YQE--RWFDAELRAPLLGHIQLDAKRL 57
YQ+ R D A L+ HI+L +L
Sbjct: 1009 YQQQRRRRDGTEDAGLVCHIRLKEVKL 1035