BLASTX nr result
ID: Ephedra26_contig00018017
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra26_contig00018017 (1197 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E sub... 213 2e-52 gb|EMT23234.1| DNA-directed RNA polymerase II subunit RPB1-B [Ae... 207 7e-51 ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub... 206 2e-50 gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indi... 206 2e-50 ref|XP_006836567.1| hypothetical protein AMTR_s00131p00068700 [A... 205 3e-50 ref|XP_004951807.1| PREDICTED: DNA-directed RNA polymerase E sub... 205 3e-50 ref|XP_006646896.1| PREDICTED: DNA-directed RNA polymerase V sub... 204 4e-50 gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus... 202 2e-49 ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin... 201 5e-49 ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub... 200 1e-48 ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub... 199 1e-48 gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac... 199 1e-48 gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no... 199 2e-48 gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus pe... 198 3e-48 gb|EMT07542.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi... 197 9e-48 gb|EOY19811.1| DNA-directed RNA polymerase E subunit 1, putative... 193 1e-46 gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative... 193 1e-46 gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japo... 193 1e-46 ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 192 2e-46 ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag... 191 5e-46 >ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Brachypodium distachyon] Length = 1935 Score = 213 bits (541), Expect = 2e-52 Identities = 138/390 (35%), Positives = 211/390 (54%), Gaps = 13/390 (3%) Frame = -2 Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISKLIRYMGVGSYQTN-- 1014 AL+ L++L+ +L+E+L GFSVS++DF +P K L E+ K I+ + Q+ Sbjct: 580 ALQFLNALQPLLMEYLLLDGFSVSLQDFNVP-----KVLLEEVHKSIQEQSLVLEQSRCS 634 Query: 1013 ----ILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGK 846 + +V+ +KD++ +I + S+ +ID S S S++VQQ+GF+G+Q + Sbjct: 635 KSQFVEMRVDNNLKDVKQQISDFVVESSHLGLLIDPKSEPSMSKVVQQLGFVGLQLYREG 694 Query: 845 NAIPSDWQKRLHTRLPCGESSFLQEY-----EVESPEVHGFITSSFISGLNPCEAFIHSV 681 S + SSF+ ++ PE +G + +S+ GLNP E +HS+ Sbjct: 695 KFYSSRLVEDCF-------SSFVDKHPPIVGNQHPPEAYGLVQNSYFHGLNPYEELVHSI 747 Query: 680 HSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXX 501 +RE ++ GL EPG LFKNLMA LRDV +CYDGTVRN C N ++Q +Y + D Sbjct: 748 STREAIVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNICSNSIMQLKYNEDDAT--- 804 Query: 500 XXXXSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGV 321 TPG+PVG+LAAT+I++PAYKA DAS + S W ++E L+ + + Sbjct: 805 ------DIPSALTPGEPVGVLAATAISNPAYKAVLDASQSNNTS-WASMKEILQTKVSYK 857 Query: 320 LKHRDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNI 141 DRKV+L++ +C KKF C EK A +Q+ LK+ LE A +I Sbjct: 858 NDTNDRKVILFLNDCS-----CPKKF---------CKEKAAIAVQNRLKRVTLEDCATDI 903 Query: 140 FVEYQERWFD--AELRAPLLGHIQLDAKRL 57 +EY ++ D +E L+GHI L+ RL Sbjct: 904 CIEYHKQILDGSSEATPALVGHIHLEKARL 933 >gb|EMT23234.1| DNA-directed RNA polymerase II subunit RPB1-B [Aegilops tauschii] Length = 2017 Score = 207 bits (527), Expect = 7e-51 Identities = 134/394 (34%), Positives = 214/394 (54%), Gaps = 11/394 (2%) Frame = -2 Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISK---LIRYMGVGSYQT 1017 AL+ L++L+ +L+E+L GFSVS++DF +P L + E K L+ S Sbjct: 695 ALKFLNALQPLLMEFLLLDGFSVSLQDFSVPKP--LLEEAQECIKKQSLVLEQSRCSSSQ 752 Query: 1016 NILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQF-----FH 852 ++ ++V+ +KD++ +I + S+ +ID S S S++VQQ+ F+G Q F+ Sbjct: 753 SVETRVDNNLKDVKQQIADFVVKSSRLGLLIDPKSDSSVSKVVQQLAFVGPQLYREGKFY 812 Query: 851 GKNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSR 672 + + + ++ P +++ PE +G + S++ GLNP E +HS+ +R Sbjct: 813 SRRLVDDCFSSFVNRHPP------IEDGVQHPPEAYGLVQSAYFHGLNPYEELVHSICTR 866 Query: 671 EGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXX 492 E ++ GL EPG LFK+LMA LRDV +CYDGTVRN C N ++Q +Y + DD Sbjct: 867 ETIVRSSRGLTEPGTLFKSLMAILRDVVICYDGTVRNICSNSIMQLKYKEEDDT------ 920 Query: 491 XSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKH 312 F PG+PVG+LAAT+I++PAYK D+S + S WE+++E LK + + Sbjct: 921 ---DFPSAIAPGEPVGVLAATAISNPAYKTVLDSSQSNNTS-WELMKEILKTKVSYKNDA 976 Query: 311 RDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVE 132 +DRKV+L++ +C KKF C EK A +Q LK+ LE A +I +E Sbjct: 977 KDRKVILFLNDCS-----CPKKF---------CKEKAAIAVQGCLKRVTLEDCATDICIE 1022 Query: 131 YQER-WFDA--ELRAPLLGHIQLDAKRLMGASLS 39 Y+++ DA E +GHI L+ L ++S Sbjct: 1023 YKKQVSLDAISEATPAFVGHIHLEKAHLEKINVS 1056 >ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria vesca subsp. vesca] Length = 1991 Score = 206 bits (523), Expect = 2e-50 Identities = 141/396 (35%), Positives = 217/396 (54%), Gaps = 11/396 (2%) Frame = -2 Query: 1196 SERALECLHSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSY 1023 +E L +S++ +L+E L S GFSV +EDF LP ++ ++ L EIS L+ +M Y Sbjct: 593 AEDVLSFFNSMQPLLMENLFSEGFSVGLEDFALPRASIQDIQKGLKEISPLLFHMRT-VY 651 Query: 1022 QTNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGKN 843 + Q+E ++ ++ + I +S++ +ID S + +++VQQVGFLG Q + Sbjct: 652 NELVEMQLENHIRKVKEPVSNFILNSSALGDLIDSKSDSAMNKVVQQVGFLGRQLYD--- 708 Query: 842 AIPSDWQKRLHTRLPCGESSFLQEYEVESPEVH------GFITSSFISGLNPCEAFIHSV 681 Q +L+++ + S L + + S V G + F+ GL+P E IHS+ Sbjct: 709 ------QGKLYSKTLVEDVSSLYQNKYPSDIVDYPSAEFGLVHRGFVHGLDPVEGMIHSI 762 Query: 680 HSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXX 501 +RE ++ GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG +G Sbjct: 763 ATREVIVRSSRGLSEPGTLFKNLMATLRDVVICYDGTVRNVCSNSIIQFEYGVKSGSGP- 821 Query: 500 XXXXSGHFVEKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNG 324 E P G+PVG+LAAT++++PAYKA D ST S S W++++E L + N Sbjct: 822 ---------ENLFPAGEPVGVLAATAMSNPAYKAVLD-STPSSNSSWDLMKEILLCKVNF 871 Query: 323 VLKHRDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVN 144 + DR+VVLY+ N CG G +K+ C E A +++ LKK L+ AV Sbjct: 872 KNELIDRRVVLYL-NDCGCG----RKY---------CREHAAYLVKNRLKKVSLKDTAVE 917 Query: 143 IFVEYQERWF--DAELRAPLLGHIQLDAKRLMGASL 42 +EYQ+ E+ + L+GH+ L+ L +L Sbjct: 918 FMIEYQKERAAGSMEIDSGLVGHVHLNEMLLRELNL 953 >gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indica Group] Length = 1867 Score = 206 bits (523), Expect = 2e-50 Identities = 135/394 (34%), Positives = 211/394 (53%), Gaps = 11/394 (2%) Frame = -2 Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISKLIRYMGVGSYQTN-- 1014 AL+ L+ L+ +L+E + GFSVS++DF +P L+ I K + + N Sbjct: 600 ALQFLNVLQPLLMELILLDGFSVSLQDFNVP-KVLLEEAQKNIEKQSLILEQSRFAENQV 658 Query: 1013 ILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGKNAIP 834 + +V+ +KD++ +I + + +ID S S S++VQQ+GF+G+Q + Sbjct: 659 VEMRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYR------ 712 Query: 833 SDWQKRLHTRLPCGES--SFLQEY----EVESPEVHGFITSSFISGLNPCEAFIHSVHSR 672 + + ++R + +F+ ++ E SPE +G + SS+ GLNP E +H++ +R Sbjct: 713 ---EGKFYSRRLVEDCYYTFVNKHPAVREEHSPEAYGLVRSSYFHGLNPYEELVHAISTR 769 Query: 671 EGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXX 492 E ++ GL EPG LFKNLMA LRDV +CYDGTVRN C ++Q Y + D Sbjct: 770 EAIVRSSRGLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLNYTEDD-------- 821 Query: 491 XSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKH 312 + F PG+PVG+LAAT+I++PAYKA DAS + S WE ++E L+ Sbjct: 822 -ALDFPSAIGPGEPVGVLAATAISNPAYKAVLDASQSNNTS-WERMKEILQTTSRYKNDM 879 Query: 311 RDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVE 132 +DRKV+L++ +C A KKF C EK A +Q L++ LE A +I +E Sbjct: 880 KDRKVILFLNDCSCA-----KKF---------CKEKAAIAVQGCLRRITLEDCATDICIE 925 Query: 131 YQERW---FDAELRAPLLGHIQLDAKRLMGASLS 39 YQ++ +E L+GHI LD L ++S Sbjct: 926 YQKQIGLDGTSEAAPALVGHIHLDRAHLERINIS 959 >ref|XP_006836567.1| hypothetical protein AMTR_s00131p00068700 [Amborella trichopoda] gi|548839106|gb|ERM99420.1| hypothetical protein AMTR_s00131p00068700 [Amborella trichopoda] Length = 1916 Score = 205 bits (521), Expect = 3e-50 Identities = 137/392 (34%), Positives = 213/392 (54%), Gaps = 7/392 (1%) Frame = -2 Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSYQ 1020 + AL+ +SL+ + +E L G+S+ + DF +P +K+ + IS L+++M + Sbjct: 605 KEALKVFNSLQPLFMEILFMEGYSIGLGDFNVPKPIMDHIKSKIKSISPLLKHMRSTDNE 664 Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGKNA 840 I SQV + + D + I++ I S+S +ID +SS++ +++V+Q+GFLG+Q F Sbjct: 665 L-IESQVAKSLDDAKLPIVKFILKSSSLGGLIDSSSSQAVNKVVEQIGFLGLQLFSRGKY 723 Query: 839 IPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSREGLL 660 D L + + + +Y ES G I S GLNP E ++SV REG + Sbjct: 724 YTKDLVDDLISFIQSKHVAKGFDYPTES---FGLIKSCLFHGLNPYEELVYSVSVREGSV 780 Query: 659 SQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXSGH 480 GL EPG+LFK+LMA LRDV +CYDGTVRN C N LVQF+YG G Sbjct: 781 RSSKGLSEPGILFKHLMAVLRDVVICYDGTVRNVCSNLLVQFEYG-----GNRKTVDV-- 833 Query: 479 FVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRDRK 300 ++ G+PVGILAAT++++PAY A +S+Q + S W +++E L + N + DR+ Sbjct: 834 ---SASAGEPVGILAATAVSNPAYAAVL-SSSQSNTSSWNLMKEILFCKQNSSEELDDRR 889 Query: 299 VVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEYQE 123 VV+Y+++C CG KK+ C E +A +Q LK L+ F FV Y Sbjct: 890 VVVYLQDCHCG------KKY---------CKENMACMVQRHLKGVPLKDFTAEFFVVYDN 934 Query: 122 RWFDA----ELRAPLLGHIQLDAKRLMGASLS 39 + ++ A L+GHI LD +L G +++ Sbjct: 935 QIPTTSEIRQIEANLVGHIHLDKMQLSGLNVT 966 >ref|XP_004951807.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Setaria italica] Length = 2038 Score = 205 bits (521), Expect = 3e-50 Identities = 132/392 (33%), Positives = 208/392 (53%), Gaps = 9/392 (2%) Frame = -2 Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISKLIRYMGVGSYQTNIL 1008 AL+ L+ L+ +L+E+L GFSV+++DF +P K L E+ K I+ + Q+ Sbjct: 601 ALQFLNVLQPLLMEFLLLDGFSVTLKDFNVP-----KAILEEVHKNIQKQSLILEQSRFS 655 Query: 1007 S------QVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGK 846 +VE +K ++ +I + + +ID S S++VQQ+GF+G+Q +H Sbjct: 656 KSQIAEMRVENNLKGVKQQISEFVIKCSDLGLLIDPKKEASMSKVVQQLGFVGLQLYHEG 715 Query: 845 NAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSREG 666 S + + S E+ PE +G + SS+ GLNP E +HS+ +RE Sbjct: 716 KLYSSRLVEDCFSNFVNKHSDIGDEHP---PEAYGLVQSSYFHGLNPYEELVHSISTREA 772 Query: 665 LLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXS 486 ++ GL EPG LFKNLMA LRDV +CYDGTVRN C N ++Q +Y + D+ Sbjct: 773 IVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNTCSNSIIQLKYKEDDET-------- 824 Query: 485 GHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRD 306 F PG+PVG+LAAT+I++PAY+A D+S + S WE ++E L+ + +D Sbjct: 825 -DFPSALPPGEPVGVLAATAISTPAYRAVLDSSQSNNAS-WESMKEILQTKVGYKNDMKD 882 Query: 305 RKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEYQ 126 RKV+L++ +C KKF C E+ A +Q L++ L A +I +E+Q Sbjct: 883 RKVILFLNDCS-----CPKKF---------CKERAALTVQSCLRRVTLADCATDISIEHQ 928 Query: 125 ERW---FDAELRAPLLGHIQLDAKRLMGASLS 39 ++ +E L+GHI LD +L ++S Sbjct: 929 KQINLDETSEAAPTLVGHIHLDKAQLERINIS 960 >ref|XP_006646896.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Oryza brachyantha] Length = 1993 Score = 204 bits (520), Expect = 4e-50 Identities = 135/398 (33%), Positives = 212/398 (53%), Gaps = 15/398 (3%) Frame = -2 Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISKLIRYMGVGSYQTN-- 1014 AL+ L+ L+ +L+E + GFSVS++DF +P K L E K I + Q+ Sbjct: 600 ALQFLNVLQPLLMELILLDGFSVSLQDFNVP-----KVHLQEAQKNIEKQSIILEQSRCA 654 Query: 1013 ----ILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGK 846 + +V+ +KD++ +I + + +ID S S S++VQQ+GF+G+Q + Sbjct: 655 ENQFVEMRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDPSVSKVVQQLGFVGLQLYR-- 712 Query: 845 NAIPSDWQKRLHTRLPCGE--SSFLQEYEV----ESPEVHGFITSSFISGLNPCEAFIHS 684 + + ++R + S+F+ ++ SPE +G + SS+ GLNP E +H+ Sbjct: 713 -------EGKFYSRRLVEDCFSNFVNKHPAVRKEHSPEAYGLVRSSYFHGLNPYEELVHA 765 Query: 683 VHSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGX 504 + +RE ++ GL EPG LFKNLMA LRDV +CYDGTVRN C ++Q +Y + D Sbjct: 766 ISTREAIVRSSRGLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLKYKEED---- 821 Query: 503 XXXXXSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNG 324 + F PG+PVG+LAAT+I++PAYKA DAS + S WE ++E L+ Sbjct: 822 -----ALDFPSAIAPGEPVGVLAATAISNPAYKAVLDASQSNNTS-WERMKEILQTTTRY 875 Query: 323 VLKHRDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVN 144 +DRK++L++ +C A KKF C EK A +Q L++ LE A + Sbjct: 876 KNDTKDRKIILFLNDCSCA-----KKF---------CKEKAAIAVQGCLRRITLEDCATD 921 Query: 143 IFVEYQERWF---DAELRAPLLGHIQLDAKRLMGASLS 39 I +EYQ++ +E L+GHI D L ++S Sbjct: 922 ICIEYQKQISLDGTSEASPALVGHIHFDRAHLERINVS 959 >gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris] Length = 2052 Score = 202 bits (515), Expect = 2e-49 Identities = 134/401 (33%), Positives = 206/401 (51%), Gaps = 14/401 (3%) Frame = -2 Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSYQ 1020 + AL+ L+ L E + + GFSVS++DF + + + + ++S L+ + Y Sbjct: 598 KEALKFFDVLQPFLTESIFADGFSVSLQDFSISRATKRIISRSIGKVSSLLHQLR-SIYN 656 Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHG--- 849 + Q+E+ ++D+++ +I S +ID S + ++VQQ+GFLG Q F Sbjct: 657 ELVAQQLEKLIRDIEHPVINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRF 716 Query: 848 -KNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSR 672 + D H + C + E +G + SF +GL+P E +HS+ +R Sbjct: 717 YSKGLVEDVASHFHVKC-CYDGDGYPSAE------YGLLKGSFFNGLDPYEEMVHSISTR 769 Query: 671 EGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXX 492 E ++ GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG Sbjct: 770 EVMVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYG----------- 818 Query: 491 XSGHFVEKS----TPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNG 324 +EK+ G+PVG+LAAT++++PAYKA DAS S S WE+++E L + N Sbjct: 819 -----LEKTEHLFPAGEPVGVLAATAMSNPAYKAVLDAS-PNSNSSWELMKEILLCKVNF 872 Query: 323 VLKHRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAV 147 + DR+V+LY+ +C CG C E A ++D L+K L+ AV Sbjct: 873 RNEPVDRRVILYLNDCDCGGNY---------------CRENAAYKVKDQLRKVNLKDAAV 917 Query: 146 NIFVEYQERWF---DAELRAPLLGHIQLDAKRLMGASLSPA 33 +EYQE+ ++E A L+GHI LD L +S A Sbjct: 918 EFVIEYQEQRIQKGNSETDAGLVGHIYLDEMMLEELKISMA 958 >ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis] gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase, putative [Ricinus communis] Length = 991 Score = 201 bits (511), Expect = 5e-49 Identities = 138/386 (35%), Positives = 209/386 (54%), Gaps = 8/386 (2%) Frame = -2 Query: 1172 HSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSYQTNILSQV 999 +SL+ +L+E L S GFSV +EDF + +A + D IS L+ + +Y + Q+ Sbjct: 605 NSLQPLLMESLFSEGFSVGLEDFYISRAAIGGTRRDFKVISSLLSQLR-STYNELMALQL 663 Query: 998 ERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQF-----FHGKNAIP 834 E ++ + + I +S +ID S + +++VQQ+GFLG+Q F+ K + Sbjct: 664 ENHIRRAKLPVADFIVRLSSIGDLIDYKSDSAMTKVVQQIGFLGLQISDRGKFYTKTLVE 723 Query: 833 SDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSREGLLSQ 654 LH ES + + + S + HG I S F GL+P E +HS+ +RE ++ Sbjct: 724 D---MALHF-----ESKYPSDIDYPSAK-HGLIQSCFFHGLDPYEEMVHSISAREVMVRS 774 Query: 653 KMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXSGHFV 474 GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG +G Sbjct: 775 TRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYG----------MKAGIKA 824 Query: 473 EKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRDRKV 297 + P G+PVG+LAAT++++PAYKA D ST S S WE+++E L+ R N DR+V Sbjct: 825 QSLFPAGEPVGVLAATAMSNPAYKAVLD-STPSSNSSWELMKEILQCRVNFKNDITDRRV 883 Query: 296 VLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEYQERW 117 +LY N CG G F C E++A +++ L+K IL+ A+ EY+ + Sbjct: 884 ILYF-NYCGCGKF-------------YCQERLAYSVKNHLEKVILKDIALCFMCEYKSQP 929 Query: 116 FDAELRAPLLGHIQLDAKRLMGASLS 39 A+ A L+GH+ L +L ++S Sbjct: 930 TIAD--AGLVGHVHLKKTKLQELNVS 953 >ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max] Length = 2020 Score = 200 bits (508), Expect = 1e-48 Identities = 137/399 (34%), Positives = 208/399 (52%), Gaps = 12/399 (3%) Frame = -2 Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSYQTN 1014 AL+ L+ L+E L + GFSVS+E+F + + ++ + + S L+ Y Y Sbjct: 601 ALKFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRRSIGKASSLL-YQLRSLYNEL 659 Query: 1013 ILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHG----K 846 + Q+E+ ++D++ II S +ID S + ++VQQVGFLG Q F Sbjct: 660 VAQQLEKHIQDVELPIINFALKSTKLGDLIDSKSKSTIDKVVQQVGFLGQQLFDRGRFYS 719 Query: 845 NAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSREG 666 + D H + C + E +G + F +GL+P E +HS+ +RE Sbjct: 720 KGLVDDVASHFHAKC-CYDGDGYPSAE------YGLLKGCFFNGLDPYEEMVHSISTREI 772 Query: 665 LLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXS 486 ++ GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG + Sbjct: 773 MVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYG----------IQA 822 Query: 485 GHFVEKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHR 309 G E P G+PVG+LAAT++++PAYKA DAS S S WE+++E L + N + Sbjct: 823 GDKTEHLFPAGEPVGVLAATAMSNPAYKAVLDAS-PNSNSSWELMKEILLCKVNFRNEPV 881 Query: 308 DRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCC-EKIAAGIQDALKKEILESFAVNIFV 135 DR+V+LY+ +C CG +CC E A +++ L+K L++ AV + Sbjct: 882 DRRVILYLNDCDCGG----------------SCCRENAAYSVKNQLRKVSLKNAAVEFII 925 Query: 134 EYQERWF---DAELRAPLLGHIQLDAKRLMGASLSPATL 27 EYQ++ ++E A L+GHI LD L +S A + Sbjct: 926 EYQQQRTQKENSETDAGLVGHIYLDEMMLEELKISMANV 964 >ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max] Length = 2082 Score = 199 bits (507), Expect = 1e-48 Identities = 135/398 (33%), Positives = 204/398 (51%), Gaps = 11/398 (2%) Frame = -2 Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSYQ 1020 + AL L+ L+E L + GFSVS+E+F + + ++ + ++S L+ Y Y Sbjct: 599 KEALNFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLL-YQLRSLYN 657 Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHG--- 849 + Q+E+ ++D++ II S +ID S + ++VQQ+GFLG Q F Sbjct: 658 ELVAQQLEKHIRDVELPIINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRF 717 Query: 848 -KNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSR 672 + D H + C + E +G + F +GL+P E +HS+ +R Sbjct: 718 YSKGLVDDVASHFHAKC-CYDGDGYPSAE------YGLLKGCFFNGLDPYEEMVHSISTR 770 Query: 671 EGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXX 492 E ++ GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG Sbjct: 771 EIMVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYG----------I 820 Query: 491 XSGHFVEKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLK 315 +G E P G+PVG+LAAT++++PAYKA DAS S S WE+++E L + N + Sbjct: 821 QAGDKSEHLFPAGEPVGVLAATAMSNPAYKAVLDAS-PSSNSSWELMKEILLCKVNFRNE 879 Query: 314 HRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIF 138 DR+V+LY+ +C CG C E A ++D L+K L+ AV Sbjct: 880 LVDRRVILYLNDCDCGGSY---------------CRENAAYSVKDQLRKVSLKDAAVEFI 924 Query: 137 VEYQERWF---DAELRAPLLGHIQLDAKRLMGASLSPA 33 +EYQ++ ++E L+GHI LD L +S A Sbjct: 925 IEYQQQRTQKENSETDVGLVGHIYLDEMMLEELKISMA 962 >gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea] Length = 1902 Score = 199 bits (507), Expect = 1e-48 Identities = 133/393 (33%), Positives = 209/393 (53%), Gaps = 11/393 (2%) Frame = -2 Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASA--TLKNDLSEISKLIRYMGVGSYQTN 1014 AL+ SL+ +L+E L S GFSVS+ DF P S ++ ++ ++S L+ + S+ Sbjct: 398 ALDFFDSLQPLLMENLFSEGFSVSLHDFFFPKSELQNIQRNIQDLSPLLLQLR-SSFNEL 456 Query: 1013 ILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQF-----FHG 849 + Q E +++ ++ + I S++ MID S + +IVQQ+GFLG+Q F+ Sbjct: 457 VQVQFENHIREFKSPVGNFILISSALGSMIDSRSDSAIDKIVQQIGFLGLQLSDRRKFYS 516 Query: 848 KNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSRE 669 + + D H + P + V E GF++ F GL+P E +HS+ +RE Sbjct: 517 RGLV-EDVASLFHQKYPFAD--------VYPSEEFGFVSRCFFHGLDPYEEIVHSIATRE 567 Query: 668 GLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXX 489 ++ GL EPG LFKNLMA LRDV +CYDGTVRN N ++QF+YG Sbjct: 568 VIVRSSKGLAEPGTLFKNLMAVLRDVVICYDGTVRNISSNSVIQFEYG-----------V 616 Query: 488 SGHFVEKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKH 312 G + P GDPVG+LAAT++++PAYKA D S+ S S W++++E L R N Sbjct: 617 GGMQSQNLFPAGDPVGVLAATAMSNPAYKAVLD-SSPNSNSSWDMMKEILFCRANFRNDI 675 Query: 311 RDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVE 132 DR+V+LY+ +CC +K+ C E + +++ LKK L A+ + +E Sbjct: 676 NDRRVILYLNDCC-----CGRKY---------CQENASCLVKNHLKKVSLRDAAIELAIE 721 Query: 131 YQERWFD---AELRAPLLGHIQLDAKRLMGASL 42 Y+ + E+ A L+GHI L++ L + + Sbjct: 722 YKRPKLEPESCEIDAGLVGHIHLNSGLLKASGI 754 >gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis] Length = 2054 Score = 199 bits (505), Expect = 2e-48 Identities = 136/386 (35%), Positives = 211/386 (54%), Gaps = 10/386 (2%) Frame = -2 Query: 1196 SERALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKN---DLSEISKLIRYMGVGS 1026 SE L+ ++L+ +L+E + + GFSV +EDF + + +KN D+ IS L+ ++ + Sbjct: 598 SEEVLKFFNALQPLLMENIFAQGFSVGLEDFSI-SQEVIKNITKDIQLISPLLYHLR-ST 655 Query: 1025 YQTNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQF---- 858 Y + Q+E ++ + + I S+S +ID S + +++VQQ+GFLG+Q Sbjct: 656 YNELVELQLENQIRFAKAPVTNFILKSSSMGNLIDPKSDSAINKVVQQIGFLGLQISDRG 715 Query: 857 -FHGKNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSV 681 F+ K + L+TR + + + S E HG I S F GL+P E +HS+ Sbjct: 716 KFYSKTLVED--VSCLYTR------KYPENVDYPSAE-HGLIRSCFFHGLDPYEEIVHSI 766 Query: 680 HSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXX 501 +RE ++ GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG+ Sbjct: 767 STREVIVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGR------- 819 Query: 500 XXXXSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGV 321 G G+PVG+LAAT++++PAYKA D S+ S S WE+++E L + Sbjct: 820 -----GSARNLYPAGEPVGVLAATAMSNPAYKAVLD-SSPSSNSSWELMKEILLCKAIFR 873 Query: 320 LKHRDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNI 141 + DR+V+LY+ N CG G +K+ C E+ +Q+ LKK L+ AV Sbjct: 874 NELIDRRVILYL-NHCGCG----RKY---------CREQATYLVQNQLKKVSLKDTAVEF 919 Query: 140 FVEY--QERWFDAELRAPLLGHIQLD 69 +EY Q + ++ A L+GHI L+ Sbjct: 920 MIEYKNQSSFSAVDMNAGLVGHIHLN 945 >gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica] Length = 1855 Score = 198 bits (504), Expect = 3e-48 Identities = 134/392 (34%), Positives = 212/392 (54%), Gaps = 13/392 (3%) Frame = -2 Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSYQ 1020 E L+ SL+ +L+E L S GFSV +EDF + ++ ++ ++ + S L+ ++ +Y Sbjct: 598 EDVLKFFDSLQPLLMENLFSEGFSVGLEDFYMSRTSIQDIQKNIQDSSDLLYHLR-STYN 656 Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQF-----F 855 + Q++ ++ ++ + I S++ +ID S + ++IVQQ+GFLG+Q F Sbjct: 657 EFVEFQLQNRIRSVKVPVSHFILESSALGDLIDSKSDSAINKIVQQIGFLGLQLSDKGRF 716 Query: 854 HGKNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEV-HGFITSSFISGLNPCEAFIHSVH 678 + K + D H++ P +++ P +G + S F GL+P EA +HS+ Sbjct: 717 YSKTLV-EDVASLCHSKYPS---------DIDYPSAEYGLVQSCFFHGLDPYEAIVHSIA 766 Query: 677 SREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXX 498 +RE ++ GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG Sbjct: 767 TREVIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYG--------- 817 Query: 497 XXXSGHFVEKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGV 321 G + P G+PVG+LAAT++++PAYKA D ST S S WE+++E L + N Sbjct: 818 -VNIGSRPQHLFPAGEPVGVLAATAMSNPAYKAVLD-STPSSNSSWELMKEILLCKVNFK 875 Query: 320 LKHRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVN 144 + DR+V+LY+ NC CG +K+ C E+ A +++ LKK L+ AV Sbjct: 876 NELIDRRVILYLNNCGCG------RKY---------CRERAACLVKNQLKKVSLKDTAVE 920 Query: 143 IFVEYQERWFDAEL---RAPLLGHIQLDAKRL 57 +EY + A L+GHI L+ L Sbjct: 921 FMIEYNNQLSGLGSLINDAGLVGHIHLNEDML 952 >gb|EMT07542.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii] Length = 817 Score = 197 bits (500), Expect = 9e-48 Identities = 132/391 (33%), Positives = 209/391 (53%), Gaps = 8/391 (2%) Frame = -2 Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISKLIRYMGVGSYQTNIL 1008 AL+ L++L+ + +E+L GFS++++DF +P L E K + S + Sbjct: 430 ALKFLNALQPLFMEFLLLDGFSLTLQDFSVPK--LLLEGAQECIKEQSSVFEQSRRCFKS 487 Query: 1007 SQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFH-GK----N 843 V+ +K+++ KI + S+ ++D S S S++VQQ+GF+G+Q +H GK Sbjct: 488 HSVDYNLKNIKEKISNFVVKSSRLGLLVDPKSDPSMSKVVQQLGFVGLQLYHEGKLYSGR 547 Query: 842 AIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSREGL 663 + S + ++ P GE +PE +G + SS+ GLNP E +H++ +RE + Sbjct: 548 LVESCFSNFVNRHPPIGEGI------QHAPEAYGLVQSSYFHGLNPYEELVHAISTRETI 601 Query: 662 LSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXSG 483 + GL E G LFK LMA LRDV VCYDGTVRN C N ++Q +Y K D + Sbjct: 602 VRSSRGLPEAGTLFKGLMAILRDVVVCYDGTVRNICSNSIMQLKY-KEDPSAI------- 653 Query: 482 HFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRDR 303 TPG+PVG LAAT+I++PAYK+ DAS + S WE+++E L+ + + ++R Sbjct: 654 ------TPGEPVGALAATAISNPAYKSVLDASQSNNTS-WELMKEILQTKVSYKNDAKNR 706 Query: 302 KVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEYQE 123 KV+L++ +C KKF C EK A +Q LK+ LE +I +EYQ+ Sbjct: 707 KVILFLNDCS-----CPKKF---------CKEKAAIAVQGCLKRVTLEDCTTDICIEYQK 752 Query: 122 RWF---DAELRAPLLGHIQLDAKRLMGASLS 39 + +E +GHI L+ + L ++S Sbjct: 753 QVSLKGTSEATPAFVGHIHLEKEHLEQINVS 783 >gb|EOY19811.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3 [Theobroma cacao] Length = 1675 Score = 193 bits (491), Expect = 1e-46 Identities = 134/390 (34%), Positives = 210/390 (53%), Gaps = 5/390 (1%) Frame = -2 Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASA--TLKNDLSEISKLIRYMGVGSYQ 1020 + L SL+ +L+E + + GFSVS+EDF + ++ D+ +IS L+ Y +Y Sbjct: 596 KEVLNFFDSLQPLLMENVFAEGFSVSLEDFSVSREVIQNIQKDIQDISPLL-YQLRSTYN 654 Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFH-GKN 843 + Q+E ++ + + I +S++ +ID S + +++VQQ+GFLG+Q + GK Sbjct: 655 ELVGLQMENHIRVAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKF 714 Query: 842 AIPSDWQKRLHTRLPCGESSFLQEYEVESPEVH-GFITSSFISGLNPCEAFIHSVHSREG 666 + K L + S V+ P G I S F GL+P E +HS+ +RE Sbjct: 715 -----YSKTLVEDVAYQFQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREV 769 Query: 665 LLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXS 486 ++ GL EPG LFKNLMA LRDV +CYDGTVRN N ++QFQYG + Sbjct: 770 IVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNISSNSIIQFQYG-----------LN 818 Query: 485 GHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRD 306 + G+PVG+LAAT++++PAYKA D ST S S WE+++E L + + D Sbjct: 819 ARTKPQFPAGEPVGVLAATAMSNPAYKAVLD-STPSSNSSWELMKEILLCKVSLKNDLVD 877 Query: 305 RKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEY 129 R+V+LY+K+C CG +K+ C E A +++ L+K L+ AV + EY Sbjct: 878 RRVILYLKDCDCG------RKY---------CQENAAYLVKNHLRKVKLKDTAVELIFEY 922 Query: 128 QERWFDAELRAPLLGHIQLDAKRLMGASLS 39 +++ +E A L+GHI L+ L ++S Sbjct: 923 KQQQTVSESEAGLVGHILLNKAVLKELNIS 952 >gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1 [Theobroma cacao] gi|508727913|gb|EOY19810.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1 [Theobroma cacao] Length = 1788 Score = 193 bits (491), Expect = 1e-46 Identities = 134/390 (34%), Positives = 210/390 (53%), Gaps = 5/390 (1%) Frame = -2 Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASA--TLKNDLSEISKLIRYMGVGSYQ 1020 + L SL+ +L+E + + GFSVS+EDF + ++ D+ +IS L+ Y +Y Sbjct: 596 KEVLNFFDSLQPLLMENVFAEGFSVSLEDFSVSREVIQNIQKDIQDISPLL-YQLRSTYN 654 Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFH-GKN 843 + Q+E ++ + + I +S++ +ID S + +++VQQ+GFLG+Q + GK Sbjct: 655 ELVGLQMENHIRVAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKF 714 Query: 842 AIPSDWQKRLHTRLPCGESSFLQEYEVESPEVH-GFITSSFISGLNPCEAFIHSVHSREG 666 + K L + S V+ P G I S F GL+P E +HS+ +RE Sbjct: 715 -----YSKTLVEDVAYQFQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREV 769 Query: 665 LLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXS 486 ++ GL EPG LFKNLMA LRDV +CYDGTVRN N ++QFQYG + Sbjct: 770 IVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNISSNSIIQFQYG-----------LN 818 Query: 485 GHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRD 306 + G+PVG+LAAT++++PAYKA D ST S S WE+++E L + + D Sbjct: 819 ARTKPQFPAGEPVGVLAATAMSNPAYKAVLD-STPSSNSSWELMKEILLCKVSLKNDLVD 877 Query: 305 RKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEY 129 R+V+LY+K+C CG +K+ C E A +++ L+K L+ AV + EY Sbjct: 878 RRVILYLKDCDCG------RKY---------CQENAAYLVKNHLRKVKLKDTAVELIFEY 922 Query: 128 QERWFDAELRAPLLGHIQLDAKRLMGASLS 39 +++ +E A L+GHI L+ L ++S Sbjct: 923 KQQQTVSESEAGLVGHILLNKAVLKELNIS 952 >gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japonica Group] Length = 2017 Score = 193 bits (491), Expect = 1e-46 Identities = 124/360 (34%), Positives = 194/360 (53%), Gaps = 8/360 (2%) Frame = -2 Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISKLIRYMGVGSYQTN-- 1014 AL+ L+ L+ +L+E + GFSVS++DF +P L+ I K + + N Sbjct: 600 ALQFLNVLQPLLMELILLDGFSVSLQDFNVP-KVLLEEAQKNIEKQSLILEQSRFAENQV 658 Query: 1013 ILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGKNAIP 834 + +V+ +KD++ +I + + +ID S S S++VQQ+GF+G+Q + Sbjct: 659 VEMRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYR------ 712 Query: 833 SDWQKRLHTRLPCGES--SFLQEY----EVESPEVHGFITSSFISGLNPCEAFIHSVHSR 672 + + ++R + +F+ ++ E SPE +G + SS+ GLNP E +H++ +R Sbjct: 713 ---EGKFYSRRLVEDCYYTFVNKHPAVREEHSPEAYGLVRSSYFHGLNPYEELVHAISTR 769 Query: 671 EGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXX 492 E ++ GL EPG LFKNLMA LRDV +CYDGTVRN C ++Q Y + D Sbjct: 770 EAIVRSSRGLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLNYTEDD-------- 821 Query: 491 XSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKH 312 + F PG+PVG+LAAT+I++PAYKA DAS + S WE ++E L+ Sbjct: 822 -ALDFPSAIGPGEPVGVLAATAISNPAYKAVLDASQSNNTS-WERMKEILQTTSRYKNDM 879 Query: 311 RDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVE 132 +DRKV+L++ +C A KKF C EK A +Q L++ LE A +I +E Sbjct: 880 KDRKVILFLNDCSCA-----KKF---------CKEKAAIAVQGCLRRITLEDCATDICIE 925 >ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit 1-like [Cucumis sativus] Length = 2019 Score = 192 bits (489), Expect = 2e-46 Identities = 128/391 (32%), Positives = 207/391 (52%), Gaps = 11/391 (2%) Frame = -2 Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPAS--ATLKNDLSEISKLIRYMGVGSYQ 1020 E L+ SL+ +L+E + S GFSV ++D+ +P + L+ ++ +S L+ Y ++ Sbjct: 625 EEVLKFFDSLQPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLL-YQLRSTFN 683 Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQF-----F 855 + Q+E ++ ++ I +S K+ D S + +++VQQ+GFLG+Q F Sbjct: 684 ELVELQLENHLRSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRF 743 Query: 854 HGKNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVH-GFITSSFISGLNPCEAFIHSVH 678 + K+ I D H R + ++ P G + F GL+P E +HS+ Sbjct: 744 YSKSLI-EDVASLFHNRYSSDK--------IDYPSAEFGLVKGCFFHGLDPYEEMVHSIS 794 Query: 677 SREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXX 498 +RE ++ GL EPG LFKNLMA LRDV +CYDGTVRN C N ++Q +YG Sbjct: 795 TREVMVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQLEYG--------- 845 Query: 497 XXXSGHFVEKS--TPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNG 324 +G S PG+PVG+LAAT++++PAYKA D ST S S W++++E L + + Sbjct: 846 -MKAGMMQPYSLFPPGEPVGVLAATAMSTPAYKAVLD-STPSSNSSWDMMKEILLCKVSF 903 Query: 323 VLKHRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAV 147 + DR+V+LY+ NC CG +K+ C E A ++ LKK L+ A+ Sbjct: 904 KNEPIDRRVILYLNNCACG------RKY---------CNENAAYVVKSHLKKVTLKDAAM 948 Query: 146 NIFVEYQERWFDAELRAPLLGHIQLDAKRLM 54 + +EY + + L L+GH+ L+ R++ Sbjct: 949 DFMIEYNRQPTPSGLGPGLVGHVHLNRVRML 979 >ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula] gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase subunit [Medicago truncatula] Length = 2032 Score = 191 bits (485), Expect = 5e-46 Identities = 131/387 (33%), Positives = 201/387 (51%), Gaps = 8/387 (2%) Frame = -2 Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASA--TLKNDLSEISKLIRYMGVGSYQ 1020 + AL ++ L+E + + GFSV ++DF + + + + ++S L+R + G Y+ Sbjct: 681 QEALNFFDVIQPFLMENIFAHGFSVGLQDFSISRAVKRVINRSIGKVSPLLRQLR-GMYK 739 Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGKNA 840 + Q+E+ ++D++ +I S +ID S + +++QQ+GFLG Q F Sbjct: 740 ELVAQQLEKVIQDIELPVINFALKSTKLGDLIDSKSKSAVDKVIQQIGFLGQQLFERGKF 799 Query: 839 IPSDWQKRL--HTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSREG 666 + + H +L C F + + S E G + F GL+P E +HS+ +RE Sbjct: 800 YSKGLVEDVASHFQLKC----FYDKDDYPSAEF-GLLKGCFFHGLDPYEELVHSIATREI 854 Query: 665 LLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXS 486 + GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG S Sbjct: 855 IDRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYG----------IQS 904 Query: 485 GHFVEKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHR 309 G + P G+PVG+LAATS+++PAYKA DAS S S W ++E L + N + Sbjct: 905 GDAAQHLFPAGEPVGVLAATSMSNPAYKAVLDAS-PSSNSSWGFMKEILLCKVNFRNEPN 963 Query: 308 DRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVE 132 DR+V+LY+ +C CG C E A +Q+ L+K L+ A++ VE Sbjct: 964 DRRVILYLNDCDCGRNY---------------CRENAAYLVQNQLRKVSLKDAALDFIVE 1008 Query: 131 YQE--RWFDAELRAPLLGHIQLDAKRL 57 YQ+ R D A L+ HI+L +L Sbjct: 1009 YQQQRRRRDGTEDAGLVCHIRLKEVKL 1035