BLASTX nr result

ID: Ephedra26_contig00018017 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00018017
         (1197 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E sub...   213   2e-52
gb|EMT23234.1| DNA-directed RNA polymerase II subunit RPB1-B [Ae...   207   7e-51
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub...   206   2e-50
gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indi...   206   2e-50
ref|XP_006836567.1| hypothetical protein AMTR_s00131p00068700 [A...   205   3e-50
ref|XP_004951807.1| PREDICTED: DNA-directed RNA polymerase E sub...   205   3e-50
ref|XP_006646896.1| PREDICTED: DNA-directed RNA polymerase V sub...   204   4e-50
gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus...   202   2e-49
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...   201   5e-49
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub...   200   1e-48
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub...   199   1e-48
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...   199   1e-48
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no...   199   2e-48
gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus pe...   198   3e-48
gb|EMT07542.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi...   197   9e-48
gb|EOY19811.1| DNA-directed RNA polymerase E subunit 1, putative...   193   1e-46
gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative...   193   1e-46
gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japo...   193   1e-46
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   192   2e-46
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag...   191   5e-46

>ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Brachypodium
            distachyon]
          Length = 1935

 Score =  213 bits (541), Expect = 2e-52
 Identities = 138/390 (35%), Positives = 211/390 (54%), Gaps = 13/390 (3%)
 Frame = -2

Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISKLIRYMGVGSYQTN-- 1014
            AL+ L++L+ +L+E+L   GFSVS++DF +P     K  L E+ K I+   +   Q+   
Sbjct: 580  ALQFLNALQPLLMEYLLLDGFSVSLQDFNVP-----KVLLEEVHKSIQEQSLVLEQSRCS 634

Query: 1013 ----ILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGK 846
                +  +V+  +KD++ +I   +  S+    +ID  S  S S++VQQ+GF+G+Q +   
Sbjct: 635  KSQFVEMRVDNNLKDVKQQISDFVVESSHLGLLIDPKSEPSMSKVVQQLGFVGLQLYREG 694

Query: 845  NAIPSDWQKRLHTRLPCGESSFLQEY-----EVESPEVHGFITSSFISGLNPCEAFIHSV 681
                S   +          SSF+ ++         PE +G + +S+  GLNP E  +HS+
Sbjct: 695  KFYSSRLVEDCF-------SSFVDKHPPIVGNQHPPEAYGLVQNSYFHGLNPYEELVHSI 747

Query: 680  HSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXX 501
             +RE ++    GL EPG LFKNLMA LRDV +CYDGTVRN C N ++Q +Y + D     
Sbjct: 748  STREAIVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNICSNSIMQLKYNEDDAT--- 804

Query: 500  XXXXSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGV 321
                        TPG+PVG+LAAT+I++PAYKA  DAS   + S W  ++E L+ + +  
Sbjct: 805  ------DIPSALTPGEPVGVLAATAISNPAYKAVLDASQSNNTS-WASMKEILQTKVSYK 857

Query: 320  LKHRDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNI 141
                DRKV+L++ +C        KKF         C EK A  +Q+ LK+  LE  A +I
Sbjct: 858  NDTNDRKVILFLNDCS-----CPKKF---------CKEKAAIAVQNRLKRVTLEDCATDI 903

Query: 140  FVEYQERWFD--AELRAPLLGHIQLDAKRL 57
             +EY ++  D  +E    L+GHI L+  RL
Sbjct: 904  CIEYHKQILDGSSEATPALVGHIHLEKARL 933


>gb|EMT23234.1| DNA-directed RNA polymerase II subunit RPB1-B [Aegilops tauschii]
          Length = 2017

 Score =  207 bits (527), Expect = 7e-51
 Identities = 134/394 (34%), Positives = 214/394 (54%), Gaps = 11/394 (2%)
 Frame = -2

Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISK---LIRYMGVGSYQT 1017
            AL+ L++L+ +L+E+L   GFSVS++DF +P    L  +  E  K   L+      S   
Sbjct: 695  ALKFLNALQPLLMEFLLLDGFSVSLQDFSVPKP--LLEEAQECIKKQSLVLEQSRCSSSQ 752

Query: 1016 NILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQF-----FH 852
            ++ ++V+  +KD++ +I   +  S+    +ID  S  S S++VQQ+ F+G Q      F+
Sbjct: 753  SVETRVDNNLKDVKQQIADFVVKSSRLGLLIDPKSDSSVSKVVQQLAFVGPQLYREGKFY 812

Query: 851  GKNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSR 672
             +  +   +   ++   P      +++     PE +G + S++  GLNP E  +HS+ +R
Sbjct: 813  SRRLVDDCFSSFVNRHPP------IEDGVQHPPEAYGLVQSAYFHGLNPYEELVHSICTR 866

Query: 671  EGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXX 492
            E ++    GL EPG LFK+LMA LRDV +CYDGTVRN C N ++Q +Y + DD       
Sbjct: 867  ETIVRSSRGLTEPGTLFKSLMAILRDVVICYDGTVRNICSNSIMQLKYKEEDDT------ 920

Query: 491  XSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKH 312
                F     PG+PVG+LAAT+I++PAYK   D+S   + S WE+++E LK + +     
Sbjct: 921  ---DFPSAIAPGEPVGVLAATAISNPAYKTVLDSSQSNNTS-WELMKEILKTKVSYKNDA 976

Query: 311  RDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVE 132
            +DRKV+L++ +C        KKF         C EK A  +Q  LK+  LE  A +I +E
Sbjct: 977  KDRKVILFLNDCS-----CPKKF---------CKEKAAIAVQGCLKRVTLEDCATDICIE 1022

Query: 131  YQER-WFDA--ELRAPLLGHIQLDAKRLMGASLS 39
            Y+++   DA  E     +GHI L+   L   ++S
Sbjct: 1023 YKKQVSLDAISEATPAFVGHIHLEKAHLEKINVS 1056


>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1991

 Score =  206 bits (523), Expect = 2e-50
 Identities = 141/396 (35%), Positives = 217/396 (54%), Gaps = 11/396 (2%)
 Frame = -2

Query: 1196 SERALECLHSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSY 1023
            +E  L   +S++ +L+E L S GFSV +EDF LP ++   ++  L EIS L+ +M    Y
Sbjct: 593  AEDVLSFFNSMQPLLMENLFSEGFSVGLEDFALPRASIQDIQKGLKEISPLLFHMRT-VY 651

Query: 1022 QTNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGKN 843
               +  Q+E  ++ ++  +   I +S++   +ID  S  + +++VQQVGFLG Q +    
Sbjct: 652  NELVEMQLENHIRKVKEPVSNFILNSSALGDLIDSKSDSAMNKVVQQVGFLGRQLYD--- 708

Query: 842  AIPSDWQKRLHTRLPCGESSFLQEYEVESPEVH------GFITSSFISGLNPCEAFIHSV 681
                  Q +L+++    + S L + +  S  V       G +   F+ GL+P E  IHS+
Sbjct: 709  ------QGKLYSKTLVEDVSSLYQNKYPSDIVDYPSAEFGLVHRGFVHGLDPVEGMIHSI 762

Query: 680  HSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXX 501
             +RE ++    GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG    +G  
Sbjct: 763  ATREVIVRSSRGLSEPGTLFKNLMATLRDVVICYDGTVRNVCSNSIIQFEYGVKSGSGP- 821

Query: 500  XXXXSGHFVEKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNG 324
                     E   P G+PVG+LAAT++++PAYKA  D ST  S S W++++E L  + N 
Sbjct: 822  ---------ENLFPAGEPVGVLAATAMSNPAYKAVLD-STPSSNSSWDLMKEILLCKVNF 871

Query: 323  VLKHRDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVN 144
              +  DR+VVLY+ N CG G    +K+         C E  A  +++ LKK  L+  AV 
Sbjct: 872  KNELIDRRVVLYL-NDCGCG----RKY---------CREHAAYLVKNRLKKVSLKDTAVE 917

Query: 143  IFVEYQERWF--DAELRAPLLGHIQLDAKRLMGASL 42
              +EYQ+       E+ + L+GH+ L+   L   +L
Sbjct: 918  FMIEYQKERAAGSMEIDSGLVGHVHLNEMLLRELNL 953


>gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indica Group]
          Length = 1867

 Score =  206 bits (523), Expect = 2e-50
 Identities = 135/394 (34%), Positives = 211/394 (53%), Gaps = 11/394 (2%)
 Frame = -2

Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISKLIRYMGVGSYQTN-- 1014
            AL+ L+ L+ +L+E +   GFSVS++DF +P    L+     I K    +    +  N  
Sbjct: 600  ALQFLNVLQPLLMELILLDGFSVSLQDFNVP-KVLLEEAQKNIEKQSLILEQSRFAENQV 658

Query: 1013 ILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGKNAIP 834
            +  +V+  +KD++ +I   +   +    +ID  S  S S++VQQ+GF+G+Q +       
Sbjct: 659  VEMRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYR------ 712

Query: 833  SDWQKRLHTRLPCGES--SFLQEY----EVESPEVHGFITSSFISGLNPCEAFIHSVHSR 672
               + + ++R    +   +F+ ++    E  SPE +G + SS+  GLNP E  +H++ +R
Sbjct: 713  ---EGKFYSRRLVEDCYYTFVNKHPAVREEHSPEAYGLVRSSYFHGLNPYEELVHAISTR 769

Query: 671  EGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXX 492
            E ++    GL EPG LFKNLMA LRDV +CYDGTVRN C   ++Q  Y + D        
Sbjct: 770  EAIVRSSRGLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLNYTEDD-------- 821

Query: 491  XSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKH 312
             +  F     PG+PVG+LAAT+I++PAYKA  DAS   + S WE ++E L+         
Sbjct: 822  -ALDFPSAIGPGEPVGVLAATAISNPAYKAVLDASQSNNTS-WERMKEILQTTSRYKNDM 879

Query: 311  RDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVE 132
            +DRKV+L++ +C  A     KKF         C EK A  +Q  L++  LE  A +I +E
Sbjct: 880  KDRKVILFLNDCSCA-----KKF---------CKEKAAIAVQGCLRRITLEDCATDICIE 925

Query: 131  YQERW---FDAELRAPLLGHIQLDAKRLMGASLS 39
            YQ++      +E    L+GHI LD   L   ++S
Sbjct: 926  YQKQIGLDGTSEAAPALVGHIHLDRAHLERINIS 959


>ref|XP_006836567.1| hypothetical protein AMTR_s00131p00068700 [Amborella trichopoda]
            gi|548839106|gb|ERM99420.1| hypothetical protein
            AMTR_s00131p00068700 [Amborella trichopoda]
          Length = 1916

 Score =  205 bits (521), Expect = 3e-50
 Identities = 137/392 (34%), Positives = 213/392 (54%), Gaps = 7/392 (1%)
 Frame = -2

Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSYQ 1020
            + AL+  +SL+ + +E L   G+S+ + DF +P      +K+ +  IS L+++M     +
Sbjct: 605  KEALKVFNSLQPLFMEILFMEGYSIGLGDFNVPKPIMDHIKSKIKSISPLLKHMRSTDNE 664

Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGKNA 840
              I SQV + + D +  I++ I  S+S   +ID +SS++ +++V+Q+GFLG+Q F     
Sbjct: 665  L-IESQVAKSLDDAKLPIVKFILKSSSLGGLIDSSSSQAVNKVVEQIGFLGLQLFSRGKY 723

Query: 839  IPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSREGLL 660
               D    L + +     +   +Y  ES    G I S    GLNP E  ++SV  REG +
Sbjct: 724  YTKDLVDDLISFIQSKHVAKGFDYPTES---FGLIKSCLFHGLNPYEELVYSVSVREGSV 780

Query: 659  SQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXSGH 480
                GL EPG+LFK+LMA LRDV +CYDGTVRN C N LVQF+YG     G         
Sbjct: 781  RSSKGLSEPGILFKHLMAVLRDVVICYDGTVRNVCSNLLVQFEYG-----GNRKTVDV-- 833

Query: 479  FVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRDRK 300
                ++ G+PVGILAAT++++PAY A   +S+Q + S W +++E L  + N   +  DR+
Sbjct: 834  ---SASAGEPVGILAATAVSNPAYAAVL-SSSQSNTSSWNLMKEILFCKQNSSEELDDRR 889

Query: 299  VVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEYQE 123
            VV+Y+++C CG      KK+         C E +A  +Q  LK   L+ F    FV Y  
Sbjct: 890  VVVYLQDCHCG------KKY---------CKENMACMVQRHLKGVPLKDFTAEFFVVYDN 934

Query: 122  RWFDA----ELRAPLLGHIQLDAKRLMGASLS 39
            +        ++ A L+GHI LD  +L G +++
Sbjct: 935  QIPTTSEIRQIEANLVGHIHLDKMQLSGLNVT 966


>ref|XP_004951807.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Setaria
            italica]
          Length = 2038

 Score =  205 bits (521), Expect = 3e-50
 Identities = 132/392 (33%), Positives = 208/392 (53%), Gaps = 9/392 (2%)
 Frame = -2

Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISKLIRYMGVGSYQTNIL 1008
            AL+ L+ L+ +L+E+L   GFSV+++DF +P     K  L E+ K I+   +   Q+   
Sbjct: 601  ALQFLNVLQPLLMEFLLLDGFSVTLKDFNVP-----KAILEEVHKNIQKQSLILEQSRFS 655

Query: 1007 S------QVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGK 846
                   +VE  +K ++ +I   +   +    +ID     S S++VQQ+GF+G+Q +H  
Sbjct: 656  KSQIAEMRVENNLKGVKQQISEFVIKCSDLGLLIDPKKEASMSKVVQQLGFVGLQLYHEG 715

Query: 845  NAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSREG 666
                S   +   +      S    E+    PE +G + SS+  GLNP E  +HS+ +RE 
Sbjct: 716  KLYSSRLVEDCFSNFVNKHSDIGDEHP---PEAYGLVQSSYFHGLNPYEELVHSISTREA 772

Query: 665  LLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXS 486
            ++    GL EPG LFKNLMA LRDV +CYDGTVRN C N ++Q +Y + D+         
Sbjct: 773  IVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNTCSNSIIQLKYKEDDET-------- 824

Query: 485  GHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRD 306
              F     PG+PVG+LAAT+I++PAY+A  D+S   + S WE ++E L+ +       +D
Sbjct: 825  -DFPSALPPGEPVGVLAATAISTPAYRAVLDSSQSNNAS-WESMKEILQTKVGYKNDMKD 882

Query: 305  RKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEYQ 126
            RKV+L++ +C        KKF         C E+ A  +Q  L++  L   A +I +E+Q
Sbjct: 883  RKVILFLNDCS-----CPKKF---------CKERAALTVQSCLRRVTLADCATDISIEHQ 928

Query: 125  ERW---FDAELRAPLLGHIQLDAKRLMGASLS 39
            ++      +E    L+GHI LD  +L   ++S
Sbjct: 929  KQINLDETSEAAPTLVGHIHLDKAQLERINIS 960


>ref|XP_006646896.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Oryza
            brachyantha]
          Length = 1993

 Score =  204 bits (520), Expect = 4e-50
 Identities = 135/398 (33%), Positives = 212/398 (53%), Gaps = 15/398 (3%)
 Frame = -2

Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISKLIRYMGVGSYQTN-- 1014
            AL+ L+ L+ +L+E +   GFSVS++DF +P     K  L E  K I    +   Q+   
Sbjct: 600  ALQFLNVLQPLLMELILLDGFSVSLQDFNVP-----KVHLQEAQKNIEKQSIILEQSRCA 654

Query: 1013 ----ILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGK 846
                +  +V+  +KD++ +I   +   +    +ID  S  S S++VQQ+GF+G+Q +   
Sbjct: 655  ENQFVEMRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDPSVSKVVQQLGFVGLQLYR-- 712

Query: 845  NAIPSDWQKRLHTRLPCGE--SSFLQEYEV----ESPEVHGFITSSFISGLNPCEAFIHS 684
                   + + ++R    +  S+F+ ++       SPE +G + SS+  GLNP E  +H+
Sbjct: 713  -------EGKFYSRRLVEDCFSNFVNKHPAVRKEHSPEAYGLVRSSYFHGLNPYEELVHA 765

Query: 683  VHSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGX 504
            + +RE ++    GL EPG LFKNLMA LRDV +CYDGTVRN C   ++Q +Y + D    
Sbjct: 766  ISTREAIVRSSRGLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLKYKEED---- 821

Query: 503  XXXXXSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNG 324
                 +  F     PG+PVG+LAAT+I++PAYKA  DAS   + S WE ++E L+     
Sbjct: 822  -----ALDFPSAIAPGEPVGVLAATAISNPAYKAVLDASQSNNTS-WERMKEILQTTTRY 875

Query: 323  VLKHRDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVN 144
                +DRK++L++ +C  A     KKF         C EK A  +Q  L++  LE  A +
Sbjct: 876  KNDTKDRKIILFLNDCSCA-----KKF---------CKEKAAIAVQGCLRRITLEDCATD 921

Query: 143  IFVEYQERWF---DAELRAPLLGHIQLDAKRLMGASLS 39
            I +EYQ++      +E    L+GHI  D   L   ++S
Sbjct: 922  ICIEYQKQISLDGTSEASPALVGHIHFDRAHLERINVS 959


>gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
          Length = 2052

 Score =  202 bits (515), Expect = 2e-49
 Identities = 134/401 (33%), Positives = 206/401 (51%), Gaps = 14/401 (3%)
 Frame = -2

Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSYQ 1020
            + AL+    L+  L E + + GFSVS++DF +  +    +   + ++S L+  +    Y 
Sbjct: 598  KEALKFFDVLQPFLTESIFADGFSVSLQDFSISRATKRIISRSIGKVSSLLHQLR-SIYN 656

Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHG--- 849
              +  Q+E+ ++D+++ +I     S     +ID  S  +  ++VQQ+GFLG Q F     
Sbjct: 657  ELVAQQLEKLIRDIEHPVINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRF 716

Query: 848  -KNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSR 672
                +  D     H +  C +       E      +G +  SF +GL+P E  +HS+ +R
Sbjct: 717  YSKGLVEDVASHFHVKC-CYDGDGYPSAE------YGLLKGSFFNGLDPYEEMVHSISTR 769

Query: 671  EGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXX 492
            E ++    GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG           
Sbjct: 770  EVMVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYG----------- 818

Query: 491  XSGHFVEKS----TPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNG 324
                 +EK+      G+PVG+LAAT++++PAYKA  DAS   S S WE+++E L  + N 
Sbjct: 819  -----LEKTEHLFPAGEPVGVLAATAMSNPAYKAVLDAS-PNSNSSWELMKEILLCKVNF 872

Query: 323  VLKHRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAV 147
              +  DR+V+LY+ +C CG                  C E  A  ++D L+K  L+  AV
Sbjct: 873  RNEPVDRRVILYLNDCDCGGNY---------------CRENAAYKVKDQLRKVNLKDAAV 917

Query: 146  NIFVEYQERWF---DAELRAPLLGHIQLDAKRLMGASLSPA 33
               +EYQE+     ++E  A L+GHI LD   L    +S A
Sbjct: 918  EFVIEYQEQRIQKGNSETDAGLVGHIYLDEMMLEELKISMA 958


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 991

 Score =  201 bits (511), Expect = 5e-49
 Identities = 138/386 (35%), Positives = 209/386 (54%), Gaps = 8/386 (2%)
 Frame = -2

Query: 1172 HSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSYQTNILSQV 999
            +SL+ +L+E L S GFSV +EDF +  +A    + D   IS L+  +   +Y   +  Q+
Sbjct: 605  NSLQPLLMESLFSEGFSVGLEDFYISRAAIGGTRRDFKVISSLLSQLR-STYNELMALQL 663

Query: 998  ERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQF-----FHGKNAIP 834
            E  ++  +  +   I   +S   +ID  S  + +++VQQ+GFLG+Q      F+ K  + 
Sbjct: 664  ENHIRRAKLPVADFIVRLSSIGDLIDYKSDSAMTKVVQQIGFLGLQISDRGKFYTKTLVE 723

Query: 833  SDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSREGLLSQ 654
                  LH      ES +  + +  S + HG I S F  GL+P E  +HS+ +RE ++  
Sbjct: 724  D---MALHF-----ESKYPSDIDYPSAK-HGLIQSCFFHGLDPYEEMVHSISAREVMVRS 774

Query: 653  KMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXSGHFV 474
              GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG            +G   
Sbjct: 775  TRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYG----------MKAGIKA 824

Query: 473  EKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRDRKV 297
            +   P G+PVG+LAAT++++PAYKA  D ST  S S WE+++E L+ R N      DR+V
Sbjct: 825  QSLFPAGEPVGVLAATAMSNPAYKAVLD-STPSSNSSWELMKEILQCRVNFKNDITDRRV 883

Query: 296  VLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEYQERW 117
            +LY  N CG G F              C E++A  +++ L+K IL+  A+    EY+ + 
Sbjct: 884  ILYF-NYCGCGKF-------------YCQERLAYSVKNHLEKVILKDIALCFMCEYKSQP 929

Query: 116  FDAELRAPLLGHIQLDAKRLMGASLS 39
              A+  A L+GH+ L   +L   ++S
Sbjct: 930  TIAD--AGLVGHVHLKKTKLQELNVS 953


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2020

 Score =  200 bits (508), Expect = 1e-48
 Identities = 137/399 (34%), Positives = 208/399 (52%), Gaps = 12/399 (3%)
 Frame = -2

Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSYQTN 1014
            AL+    L+  L+E L + GFSVS+E+F +  +    ++  + + S L+ Y     Y   
Sbjct: 601  ALKFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRRSIGKASSLL-YQLRSLYNEL 659

Query: 1013 ILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHG----K 846
            +  Q+E+ ++D++  II     S     +ID  S  +  ++VQQVGFLG Q F       
Sbjct: 660  VAQQLEKHIQDVELPIINFALKSTKLGDLIDSKSKSTIDKVVQQVGFLGQQLFDRGRFYS 719

Query: 845  NAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSREG 666
              +  D     H +  C +       E      +G +   F +GL+P E  +HS+ +RE 
Sbjct: 720  KGLVDDVASHFHAKC-CYDGDGYPSAE------YGLLKGCFFNGLDPYEEMVHSISTREI 772

Query: 665  LLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXS 486
            ++    GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG            +
Sbjct: 773  MVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYG----------IQA 822

Query: 485  GHFVEKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHR 309
            G   E   P G+PVG+LAAT++++PAYKA  DAS   S S WE+++E L  + N   +  
Sbjct: 823  GDKTEHLFPAGEPVGVLAATAMSNPAYKAVLDAS-PNSNSSWELMKEILLCKVNFRNEPV 881

Query: 308  DRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCC-EKIAAGIQDALKKEILESFAVNIFV 135
            DR+V+LY+ +C CG                 +CC E  A  +++ L+K  L++ AV   +
Sbjct: 882  DRRVILYLNDCDCGG----------------SCCRENAAYSVKNQLRKVSLKNAAVEFII 925

Query: 134  EYQERWF---DAELRAPLLGHIQLDAKRLMGASLSPATL 27
            EYQ++     ++E  A L+GHI LD   L    +S A +
Sbjct: 926  EYQQQRTQKENSETDAGLVGHIYLDEMMLEELKISMANV 964


>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2082

 Score =  199 bits (507), Expect = 1e-48
 Identities = 135/398 (33%), Positives = 204/398 (51%), Gaps = 11/398 (2%)
 Frame = -2

Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSYQ 1020
            + AL     L+  L+E L + GFSVS+E+F +  +    ++  + ++S L+ Y     Y 
Sbjct: 599  KEALNFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLL-YQLRSLYN 657

Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHG--- 849
              +  Q+E+ ++D++  II     S     +ID  S  +  ++VQQ+GFLG Q F     
Sbjct: 658  ELVAQQLEKHIRDVELPIINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRF 717

Query: 848  -KNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSR 672
                +  D     H +  C +       E      +G +   F +GL+P E  +HS+ +R
Sbjct: 718  YSKGLVDDVASHFHAKC-CYDGDGYPSAE------YGLLKGCFFNGLDPYEEMVHSISTR 770

Query: 671  EGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXX 492
            E ++    GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG           
Sbjct: 771  EIMVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYG----------I 820

Query: 491  XSGHFVEKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLK 315
             +G   E   P G+PVG+LAAT++++PAYKA  DAS   S S WE+++E L  + N   +
Sbjct: 821  QAGDKSEHLFPAGEPVGVLAATAMSNPAYKAVLDAS-PSSNSSWELMKEILLCKVNFRNE 879

Query: 314  HRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIF 138
              DR+V+LY+ +C CG                  C E  A  ++D L+K  L+  AV   
Sbjct: 880  LVDRRVILYLNDCDCGGSY---------------CRENAAYSVKDQLRKVSLKDAAVEFI 924

Query: 137  VEYQERWF---DAELRAPLLGHIQLDAKRLMGASLSPA 33
            +EYQ++     ++E    L+GHI LD   L    +S A
Sbjct: 925  IEYQQQRTQKENSETDVGLVGHIYLDEMMLEELKISMA 962


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score =  199 bits (507), Expect = 1e-48
 Identities = 133/393 (33%), Positives = 209/393 (53%), Gaps = 11/393 (2%)
 Frame = -2

Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASA--TLKNDLSEISKLIRYMGVGSYQTN 1014
            AL+   SL+ +L+E L S GFSVS+ DF  P S    ++ ++ ++S L+  +   S+   
Sbjct: 398  ALDFFDSLQPLLMENLFSEGFSVSLHDFFFPKSELQNIQRNIQDLSPLLLQLR-SSFNEL 456

Query: 1013 ILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQF-----FHG 849
            +  Q E  +++ ++ +   I  S++   MID  S  +  +IVQQ+GFLG+Q      F+ 
Sbjct: 457  VQVQFENHIREFKSPVGNFILISSALGSMIDSRSDSAIDKIVQQIGFLGLQLSDRRKFYS 516

Query: 848  KNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSRE 669
            +  +  D     H + P  +        V   E  GF++  F  GL+P E  +HS+ +RE
Sbjct: 517  RGLV-EDVASLFHQKYPFAD--------VYPSEEFGFVSRCFFHGLDPYEEIVHSIATRE 567

Query: 668  GLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXX 489
             ++    GL EPG LFKNLMA LRDV +CYDGTVRN   N ++QF+YG            
Sbjct: 568  VIVRSSKGLAEPGTLFKNLMAVLRDVVICYDGTVRNISSNSVIQFEYG-----------V 616

Query: 488  SGHFVEKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKH 312
             G   +   P GDPVG+LAAT++++PAYKA  D S+  S S W++++E L  R N     
Sbjct: 617  GGMQSQNLFPAGDPVGVLAATAMSNPAYKAVLD-SSPNSNSSWDMMKEILFCRANFRNDI 675

Query: 311  RDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVE 132
             DR+V+LY+ +CC       +K+         C E  +  +++ LKK  L   A+ + +E
Sbjct: 676  NDRRVILYLNDCC-----CGRKY---------CQENASCLVKNHLKKVSLRDAAIELAIE 721

Query: 131  YQERWFD---AELRAPLLGHIQLDAKRLMGASL 42
            Y+    +    E+ A L+GHI L++  L  + +
Sbjct: 722  YKRPKLEPESCEIDAGLVGHIHLNSGLLKASGI 754


>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
          Length = 2054

 Score =  199 bits (505), Expect = 2e-48
 Identities = 136/386 (35%), Positives = 211/386 (54%), Gaps = 10/386 (2%)
 Frame = -2

Query: 1196 SERALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKN---DLSEISKLIRYMGVGS 1026
            SE  L+  ++L+ +L+E + + GFSV +EDF + +   +KN   D+  IS L+ ++   +
Sbjct: 598  SEEVLKFFNALQPLLMENIFAQGFSVGLEDFSI-SQEVIKNITKDIQLISPLLYHLR-ST 655

Query: 1025 YQTNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQF---- 858
            Y   +  Q+E  ++  +  +   I  S+S   +ID  S  + +++VQQ+GFLG+Q     
Sbjct: 656  YNELVELQLENQIRFAKAPVTNFILKSSSMGNLIDPKSDSAINKVVQQIGFLGLQISDRG 715

Query: 857  -FHGKNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSV 681
             F+ K  +       L+TR       + +  +  S E HG I S F  GL+P E  +HS+
Sbjct: 716  KFYSKTLVED--VSCLYTR------KYPENVDYPSAE-HGLIRSCFFHGLDPYEEIVHSI 766

Query: 680  HSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXX 501
             +RE ++    GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG+       
Sbjct: 767  STREVIVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGR------- 819

Query: 500  XXXXSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGV 321
                 G        G+PVG+LAAT++++PAYKA  D S+  S S WE+++E L  +    
Sbjct: 820  -----GSARNLYPAGEPVGVLAATAMSNPAYKAVLD-SSPSSNSSWELMKEILLCKAIFR 873

Query: 320  LKHRDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNI 141
             +  DR+V+LY+ N CG G    +K+         C E+    +Q+ LKK  L+  AV  
Sbjct: 874  NELIDRRVILYL-NHCGCG----RKY---------CREQATYLVQNQLKKVSLKDTAVEF 919

Query: 140  FVEY--QERWFDAELRAPLLGHIQLD 69
             +EY  Q  +   ++ A L+GHI L+
Sbjct: 920  MIEYKNQSSFSAVDMNAGLVGHIHLN 945


>gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
          Length = 1855

 Score =  198 bits (504), Expect = 3e-48
 Identities = 134/392 (34%), Positives = 212/392 (54%), Gaps = 13/392 (3%)
 Frame = -2

Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASAT--LKNDLSEISKLIRYMGVGSYQ 1020
            E  L+   SL+ +L+E L S GFSV +EDF +  ++   ++ ++ + S L+ ++   +Y 
Sbjct: 598  EDVLKFFDSLQPLLMENLFSEGFSVGLEDFYMSRTSIQDIQKNIQDSSDLLYHLR-STYN 656

Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQF-----F 855
              +  Q++  ++ ++  +   I  S++   +ID  S  + ++IVQQ+GFLG+Q      F
Sbjct: 657  EFVEFQLQNRIRSVKVPVSHFILESSALGDLIDSKSDSAINKIVQQIGFLGLQLSDKGRF 716

Query: 854  HGKNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEV-HGFITSSFISGLNPCEAFIHSVH 678
            + K  +  D     H++ P          +++ P   +G + S F  GL+P EA +HS+ 
Sbjct: 717  YSKTLV-EDVASLCHSKYPS---------DIDYPSAEYGLVQSCFFHGLDPYEAIVHSIA 766

Query: 677  SREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXX 498
            +RE ++    GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG         
Sbjct: 767  TREVIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYG--------- 817

Query: 497  XXXSGHFVEKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGV 321
                G   +   P G+PVG+LAAT++++PAYKA  D ST  S S WE+++E L  + N  
Sbjct: 818  -VNIGSRPQHLFPAGEPVGVLAATAMSNPAYKAVLD-STPSSNSSWELMKEILLCKVNFK 875

Query: 320  LKHRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVN 144
             +  DR+V+LY+ NC CG      +K+         C E+ A  +++ LKK  L+  AV 
Sbjct: 876  NELIDRRVILYLNNCGCG------RKY---------CRERAACLVKNQLKKVSLKDTAVE 920

Query: 143  IFVEYQERWFDAEL---RAPLLGHIQLDAKRL 57
              +EY  +          A L+GHI L+   L
Sbjct: 921  FMIEYNNQLSGLGSLINDAGLVGHIHLNEDML 952


>gb|EMT07542.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii]
          Length = 817

 Score =  197 bits (500), Expect = 9e-48
 Identities = 132/391 (33%), Positives = 209/391 (53%), Gaps = 8/391 (2%)
 Frame = -2

Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISKLIRYMGVGSYQTNIL 1008
            AL+ L++L+ + +E+L   GFS++++DF +P    L     E  K    +   S +    
Sbjct: 430  ALKFLNALQPLFMEFLLLDGFSLTLQDFSVPK--LLLEGAQECIKEQSSVFEQSRRCFKS 487

Query: 1007 SQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFH-GK----N 843
              V+  +K+++ KI   +  S+    ++D  S  S S++VQQ+GF+G+Q +H GK     
Sbjct: 488  HSVDYNLKNIKEKISNFVVKSSRLGLLVDPKSDPSMSKVVQQLGFVGLQLYHEGKLYSGR 547

Query: 842  AIPSDWQKRLHTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSREGL 663
             + S +   ++   P GE          +PE +G + SS+  GLNP E  +H++ +RE +
Sbjct: 548  LVESCFSNFVNRHPPIGEGI------QHAPEAYGLVQSSYFHGLNPYEELVHAISTRETI 601

Query: 662  LSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXSG 483
            +    GL E G LFK LMA LRDV VCYDGTVRN C N ++Q +Y K D +         
Sbjct: 602  VRSSRGLPEAGTLFKGLMAILRDVVVCYDGTVRNICSNSIMQLKY-KEDPSAI------- 653

Query: 482  HFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRDR 303
                  TPG+PVG LAAT+I++PAYK+  DAS   + S WE+++E L+ + +     ++R
Sbjct: 654  ------TPGEPVGALAATAISNPAYKSVLDASQSNNTS-WELMKEILQTKVSYKNDAKNR 706

Query: 302  KVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEYQE 123
            KV+L++ +C        KKF         C EK A  +Q  LK+  LE    +I +EYQ+
Sbjct: 707  KVILFLNDCS-----CPKKF---------CKEKAAIAVQGCLKRVTLEDCTTDICIEYQK 752

Query: 122  RWF---DAELRAPLLGHIQLDAKRLMGASLS 39
            +      +E     +GHI L+ + L   ++S
Sbjct: 753  QVSLKGTSEATPAFVGHIHLEKEHLEQINVS 783


>gb|EOY19811.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3
            [Theobroma cacao]
          Length = 1675

 Score =  193 bits (491), Expect = 1e-46
 Identities = 134/390 (34%), Positives = 210/390 (53%), Gaps = 5/390 (1%)
 Frame = -2

Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASA--TLKNDLSEISKLIRYMGVGSYQ 1020
            +  L    SL+ +L+E + + GFSVS+EDF +       ++ D+ +IS L+ Y    +Y 
Sbjct: 596  KEVLNFFDSLQPLLMENVFAEGFSVSLEDFSVSREVIQNIQKDIQDISPLL-YQLRSTYN 654

Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFH-GKN 843
              +  Q+E  ++  +  +   I +S++   +ID  S  + +++VQQ+GFLG+Q  + GK 
Sbjct: 655  ELVGLQMENHIRVAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKF 714

Query: 842  AIPSDWQKRLHTRLPCGESSFLQEYEVESPEVH-GFITSSFISGLNPCEAFIHSVHSREG 666
                 + K L   +     S      V+ P    G I S F  GL+P E  +HS+ +RE 
Sbjct: 715  -----YSKTLVEDVAYQFQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREV 769

Query: 665  LLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXS 486
            ++    GL EPG LFKNLMA LRDV +CYDGTVRN   N ++QFQYG            +
Sbjct: 770  IVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNISSNSIIQFQYG-----------LN 818

Query: 485  GHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRD 306
                 +   G+PVG+LAAT++++PAYKA  D ST  S S WE+++E L  + +      D
Sbjct: 819  ARTKPQFPAGEPVGVLAATAMSNPAYKAVLD-STPSSNSSWELMKEILLCKVSLKNDLVD 877

Query: 305  RKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEY 129
            R+V+LY+K+C CG      +K+         C E  A  +++ L+K  L+  AV +  EY
Sbjct: 878  RRVILYLKDCDCG------RKY---------CQENAAYLVKNHLRKVKLKDTAVELIFEY 922

Query: 128  QERWFDAELRAPLLGHIQLDAKRLMGASLS 39
            +++   +E  A L+GHI L+   L   ++S
Sbjct: 923  KQQQTVSESEAGLVGHILLNKAVLKELNIS 952


>gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
            [Theobroma cacao] gi|508727913|gb|EOY19810.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao]
          Length = 1788

 Score =  193 bits (491), Expect = 1e-46
 Identities = 134/390 (34%), Positives = 210/390 (53%), Gaps = 5/390 (1%)
 Frame = -2

Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASA--TLKNDLSEISKLIRYMGVGSYQ 1020
            +  L    SL+ +L+E + + GFSVS+EDF +       ++ D+ +IS L+ Y    +Y 
Sbjct: 596  KEVLNFFDSLQPLLMENVFAEGFSVSLEDFSVSREVIQNIQKDIQDISPLL-YQLRSTYN 654

Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFH-GKN 843
              +  Q+E  ++  +  +   I +S++   +ID  S  + +++VQQ+GFLG+Q  + GK 
Sbjct: 655  ELVGLQMENHIRVAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKF 714

Query: 842  AIPSDWQKRLHTRLPCGESSFLQEYEVESPEVH-GFITSSFISGLNPCEAFIHSVHSREG 666
                 + K L   +     S      V+ P    G I S F  GL+P E  +HS+ +RE 
Sbjct: 715  -----YSKTLVEDVAYQFQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREV 769

Query: 665  LLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXS 486
            ++    GL EPG LFKNLMA LRDV +CYDGTVRN   N ++QFQYG            +
Sbjct: 770  IVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNISSNSIIQFQYG-----------LN 818

Query: 485  GHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRD 306
                 +   G+PVG+LAAT++++PAYKA  D ST  S S WE+++E L  + +      D
Sbjct: 819  ARTKPQFPAGEPVGVLAATAMSNPAYKAVLD-STPSSNSSWELMKEILLCKVSLKNDLVD 877

Query: 305  RKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEY 129
            R+V+LY+K+C CG      +K+         C E  A  +++ L+K  L+  AV +  EY
Sbjct: 878  RRVILYLKDCDCG------RKY---------CQENAAYLVKNHLRKVKLKDTAVELIFEY 922

Query: 128  QERWFDAELRAPLLGHIQLDAKRLMGASLS 39
            +++   +E  A L+GHI L+   L   ++S
Sbjct: 923  KQQQTVSESEAGLVGHILLNKAVLKELNIS 952


>gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japonica Group]
          Length = 2017

 Score =  193 bits (491), Expect = 1e-46
 Identities = 124/360 (34%), Positives = 194/360 (53%), Gaps = 8/360 (2%)
 Frame = -2

Query: 1187 ALECLHSLECILVEWLSSSGFSVSIEDFVLPASATLKNDLSEISKLIRYMGVGSYQTN-- 1014
            AL+ L+ L+ +L+E +   GFSVS++DF +P    L+     I K    +    +  N  
Sbjct: 600  ALQFLNVLQPLLMELILLDGFSVSLQDFNVP-KVLLEEAQKNIEKQSLILEQSRFAENQV 658

Query: 1013 ILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGKNAIP 834
            +  +V+  +KD++ +I   +   +    +ID  S  S S++VQQ+GF+G+Q +       
Sbjct: 659  VEMRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYR------ 712

Query: 833  SDWQKRLHTRLPCGES--SFLQEY----EVESPEVHGFITSSFISGLNPCEAFIHSVHSR 672
               + + ++R    +   +F+ ++    E  SPE +G + SS+  GLNP E  +H++ +R
Sbjct: 713  ---EGKFYSRRLVEDCYYTFVNKHPAVREEHSPEAYGLVRSSYFHGLNPYEELVHAISTR 769

Query: 671  EGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXX 492
            E ++    GL EPG LFKNLMA LRDV +CYDGTVRN C   ++Q  Y + D        
Sbjct: 770  EAIVRSSRGLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLNYTEDD-------- 821

Query: 491  XSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKH 312
             +  F     PG+PVG+LAAT+I++PAYKA  DAS   + S WE ++E L+         
Sbjct: 822  -ALDFPSAIGPGEPVGVLAATAISNPAYKAVLDASQSNNTS-WERMKEILQTTSRYKNDM 879

Query: 311  RDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVE 132
            +DRKV+L++ +C  A     KKF         C EK A  +Q  L++  LE  A +I +E
Sbjct: 880  KDRKVILFLNDCSCA-----KKF---------CKEKAAIAVQGCLRRITLEDCATDICIE 925


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score =  192 bits (489), Expect = 2e-46
 Identities = 128/391 (32%), Positives = 207/391 (52%), Gaps = 11/391 (2%)
 Frame = -2

Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPAS--ATLKNDLSEISKLIRYMGVGSYQ 1020
            E  L+   SL+ +L+E + S GFSV ++D+ +P +    L+ ++  +S L+ Y    ++ 
Sbjct: 625  EEVLKFFDSLQPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLL-YQLRSTFN 683

Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQF-----F 855
              +  Q+E  ++ ++      I   +S  K+ D  S  + +++VQQ+GFLG+Q      F
Sbjct: 684  ELVELQLENHLRSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRF 743

Query: 854  HGKNAIPSDWQKRLHTRLPCGESSFLQEYEVESPEVH-GFITSSFISGLNPCEAFIHSVH 678
            + K+ I  D     H R    +        ++ P    G +   F  GL+P E  +HS+ 
Sbjct: 744  YSKSLI-EDVASLFHNRYSSDK--------IDYPSAEFGLVKGCFFHGLDPYEEMVHSIS 794

Query: 677  SREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXX 498
            +RE ++    GL EPG LFKNLMA LRDV +CYDGTVRN C N ++Q +YG         
Sbjct: 795  TREVMVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQLEYG--------- 845

Query: 497  XXXSGHFVEKS--TPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNG 324
               +G     S   PG+PVG+LAAT++++PAYKA  D ST  S S W++++E L  + + 
Sbjct: 846  -MKAGMMQPYSLFPPGEPVGVLAATAMSTPAYKAVLD-STPSSNSSWDMMKEILLCKVSF 903

Query: 323  VLKHRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAV 147
              +  DR+V+LY+ NC CG      +K+         C E  A  ++  LKK  L+  A+
Sbjct: 904  KNEPIDRRVILYLNNCACG------RKY---------CNENAAYVVKSHLKKVTLKDAAM 948

Query: 146  NIFVEYQERWFDAELRAPLLGHIQLDAKRLM 54
            +  +EY  +   + L   L+GH+ L+  R++
Sbjct: 949  DFMIEYNRQPTPSGLGPGLVGHVHLNRVRML 979


>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
            gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
            subunit [Medicago truncatula]
          Length = 2032

 Score =  191 bits (485), Expect = 5e-46
 Identities = 131/387 (33%), Positives = 201/387 (51%), Gaps = 8/387 (2%)
 Frame = -2

Query: 1193 ERALECLHSLECILVEWLSSSGFSVSIEDFVLPASA--TLKNDLSEISKLIRYMGVGSYQ 1020
            + AL     ++  L+E + + GFSV ++DF +  +    +   + ++S L+R +  G Y+
Sbjct: 681  QEALNFFDVIQPFLMENIFAHGFSVGLQDFSISRAVKRVINRSIGKVSPLLRQLR-GMYK 739

Query: 1019 TNILSQVERGVKDLQNKIIREIPSSNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGKNA 840
              +  Q+E+ ++D++  +I     S     +ID  S  +  +++QQ+GFLG Q F     
Sbjct: 740  ELVAQQLEKVIQDIELPVINFALKSTKLGDLIDSKSKSAVDKVIQQIGFLGQQLFERGKF 799

Query: 839  IPSDWQKRL--HTRLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCEAFIHSVHSREG 666
                  + +  H +L C    F  + +  S E  G +   F  GL+P E  +HS+ +RE 
Sbjct: 800  YSKGLVEDVASHFQLKC----FYDKDDYPSAEF-GLLKGCFFHGLDPYEELVHSIATREI 854

Query: 665  LLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXS 486
            +     GL EPG LFKNLMA LRDV +CYDGTVRN C N ++QF+YG            S
Sbjct: 855  IDRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYG----------IQS 904

Query: 485  GHFVEKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHR 309
            G   +   P G+PVG+LAATS+++PAYKA  DAS   S S W  ++E L  + N   +  
Sbjct: 905  GDAAQHLFPAGEPVGVLAATSMSNPAYKAVLDAS-PSSNSSWGFMKEILLCKVNFRNEPN 963

Query: 308  DRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVE 132
            DR+V+LY+ +C CG                  C E  A  +Q+ L+K  L+  A++  VE
Sbjct: 964  DRRVILYLNDCDCGRNY---------------CRENAAYLVQNQLRKVSLKDAALDFIVE 1008

Query: 131  YQE--RWFDAELRAPLLGHIQLDAKRL 57
            YQ+  R  D    A L+ HI+L   +L
Sbjct: 1009 YQQQRRRRDGTEDAGLVCHIRLKEVKL 1035


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