BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00017133
         (2943 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   411   e-152
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         410   e-152
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   404   e-149
gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]             409   e-144
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi...   389   e-142
emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera]   403   e-139
gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157...   384   e-136
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group...   382   e-135
gb|ABA95820.1| retrotransposon protein, putative, unclassified [...   397   e-135
gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsi...   379   e-134
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ...   360   e-130
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...   333   e-128
emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group]           353   e-127
gb|ABW74566.1| integrase [Boechera divaricarpa]                       367   e-127
emb|CAD41731.1| OSJNBb0034I13.10 [Oryza sativa Japonica Group]        355   e-125
emb|CAB75932.1| putative protein [Arabidopsis thaliana]               358   e-125
gb|AAG10812.1|AC018460_6 Putative retroelement polyprotein [Arab...   364   e-125
emb|CAE03692.2| OSJNBb0026E15.10 [Oryza sativa Japonica Group]        349   e-123
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  340   e-123
emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]   337   e-123

>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  411 bits (1056), Expect(3) = e-152
 Identities = 237/704 (33%), Positives = 379/704 (53%), Gaps = 3/704 (0%)
 Frame = +1

Query: 631  ACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSE 810
            A   AVYLLN  P KS+  K P + ++   P   HLR+F S    H+P E R KLD KSE
Sbjct: 659  AVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSE 718

Query: 811  IGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDI 990
              +F+GY  N+KGY ++NP   K IISR+++F+E+       N +         E+    
Sbjct: 719  KYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEED---- 774

Query: 991  ITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQET 1170
               EP+P+ +     +P     PT  T  +++  S        ++ PR+           
Sbjct: 775  ---EPEPTREEPPSEEPTTP--PTSPTSSQIEESSS-------ERTPRF----------- 811

Query: 1171 SSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELIV 1350
             S Q   + T+  EN+       E E + F++A     W   + +E + + + DTWEL  
Sbjct: 812  RSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTS 871

Query: 1351 LPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRTL 1530
            LP   KAIG KWV   K N++G +E++KARLVAK ++Q+ GIDY E FAP  +++T+R +
Sbjct: 872  LPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLI 931

Query: 1531 IILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIK--DPNXXXXXXXXXXXXXXXP 1704
            I LA  + W+I  +D+K AFL+G++ +E+Y++QP+G+I   + +               P
Sbjct: 932  ISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAP 991

Query: 1705 RAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFKK 1884
            RAW  +++ +   +  IK   +  L Y+  +K   +I   ++DD+  TG N +    FKK
Sbjct: 992  RAWNTRIDKYFKEKDFIKCPYEHAL-YIKIQKEDILIACLYVDDLIFTGNNPSIFEEFKK 1050

Query: 1885 ELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPGV 2064
            E+   FE+T +G   YYLGI++ +    + +  E Y +++L  F+ +      TP++ G+
Sbjct: 1051 EMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGI 1110

Query: 2065 NLLKNNEVKA-NAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNILK 2241
             L K  E +  +  T++S++ SL YLT TR DI +A+  +SR+M+ P+    KAA+ IL+
Sbjct: 1111 KLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILR 1170

Query: 2242 YVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKATIGFLVTLGGNLVSWIS*KLKIV 2421
            Y+K T+N GL +   S  KL  + D+++     D K+T GF+  +G    +W+S K  IV
Sbjct: 1171 YIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIV 1230

Query: 2422 SKSVIEAEYRAIEDTTSEVIWFLQLL*DCGEDIQILVEISTDNEGAMRLVQNPFFHERTK 2601
            + S  EAEY A        IW   LL +     +   +I  DN+ A+ L +NP FH+R+K
Sbjct: 1231 TLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSK 1290

Query: 2602 HIEIQAHFIREKFK*RIIDIKHIKTKEQPTDYFTKALGGSKFKK 2733
            HI+ + H+IRE    + + ++++KT +Q  D+FTK L    F K
Sbjct: 1291 HIDTRYHYIRECVSKKDVQLEYVKTHDQVADFFTKPLKRENFIK 1334



 Score = 99.0 bits (245), Expect(3) = e-152
 Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
 Frame = +1

Query: 43  LCHEENNLIWHNRLGHVNS---KYLKKLEDITKNPNLIMPNNKCTHCCISKAHKTPFPQQ 213
           +C++E + +WH R GH+N    + L + E +   P +  PN  C  C + K  K  FP++
Sbjct: 459 MCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKE 518

Query: 214 SSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 363
           SS RAQ+PLEL+H D+ GP++     K  YFL+FIDD+ +  WVY L+ K
Sbjct: 519 SSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEK 568



 Score = 80.5 bits (197), Expect(3) = e-152
 Identities = 38/87 (43%), Positives = 57/87 (65%)
 Frame = +3

Query: 357 KKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQ 536
           +K  +   FK F+  V+ ++   + T+RSD G + T KE + +C   GI  +LT+P +PQ
Sbjct: 567 EKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 626

Query: 537 QNGVVKRRNKTIVEMMRSMLNHAKLIK 617
           QNGVV+R+N+TI+EM RSML   +L K
Sbjct: 627 QNGVVERKNRTILEMARSMLKSKRLPK 653


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  410 bits (1055), Expect(3) = e-152
 Identities = 237/704 (33%), Positives = 379/704 (53%), Gaps = 3/704 (0%)
 Frame = +1

Query: 631  ACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSE 810
            A   AVYLLN  P KS+  K P + ++   P   HLR+F S    H+P E R KLD KSE
Sbjct: 659  AVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSE 718

Query: 811  IGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDI 990
              +F+GY  N+KGY ++NP   K IISR+++F+E+       N +         E+    
Sbjct: 719  KYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEED---- 774

Query: 991  ITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQET 1170
               EP+P+ +     +P     PT  T  +++  S        ++ PR+           
Sbjct: 775  ---EPEPTREEPPSEEPTTP--PTSPTSSQIEESSS-------ERTPRF----------- 811

Query: 1171 SSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELIV 1350
             S Q   + T+  EN+       E E + F++A     W   + +E + + + DTWEL  
Sbjct: 812  RSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTS 871

Query: 1351 LPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRTL 1530
            LP   KAIG KWV   K N++G +E++KARLVAK ++Q+ GIDY E FAP  +++T+R +
Sbjct: 872  LPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLI 931

Query: 1531 IILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIK--DPNXXXXXXXXXXXXXXXP 1704
            I LA  + W+I  +D+K AFL+G++ +E+Y++QP+G+I   + +               P
Sbjct: 932  ISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAP 991

Query: 1705 RAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFKK 1884
            RAW  +++ +   +  IK   +  L Y+  +K   +I   ++DD+  TG N +    FKK
Sbjct: 992  RAWNTRIDKYFKEKDFIKCPYEHAL-YIKIQKEDILIACLYVDDLIFTGNNPSIFEEFKK 1050

Query: 1885 ELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPGV 2064
            E+   FE+T +G   YYLGI++ +    + +  E Y +++L  F+ +      TP++ G+
Sbjct: 1051 EMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKIDDSNPVCTPMECGI 1110

Query: 2065 NLLKNNEVKA-NAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNILK 2241
             L K  E +  +  T++S++ SL YLT TR DI +A+  +SR+M+ P+    KAA+ IL+
Sbjct: 1111 KLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILR 1170

Query: 2242 YVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKATIGFLVTLGGNLVSWIS*KLKIV 2421
            Y+K T+N GL +   S  KL  + D+++     D K+T GF+  +G    +W+S K  IV
Sbjct: 1171 YIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIV 1230

Query: 2422 SKSVIEAEYRAIEDTTSEVIWFLQLL*DCGEDIQILVEISTDNEGAMRLVQNPFFHERTK 2601
            + S  EAEY A        IW   LL +     +   +I  DN+ A+ L +NP FH+R+K
Sbjct: 1231 TLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSK 1290

Query: 2602 HIEIQAHFIREKFK*RIIDIKHIKTKEQPTDYFTKALGGSKFKK 2733
            HI+ + H+IRE    + + ++++KT +Q  D+FTK L    F K
Sbjct: 1291 HIDTRYHYIRECVSKKDVQLEYVKTHDQVADFFTKPLKRENFIK 1334



 Score = 99.0 bits (245), Expect(3) = e-152
 Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
 Frame = +1

Query: 43  LCHEENNLIWHNRLGHVNS---KYLKKLEDITKNPNLIMPNNKCTHCCISKAHKTPFPQQ 213
           +C++E + +WH R GH+N    + L + E +   P +  PN  C  C + K  K  FP++
Sbjct: 459 MCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKE 518

Query: 214 SSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 363
           SS RAQ+PLEL+H D+ GP++     K  YFL+FIDD+ +  WVY L+ K
Sbjct: 519 SSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEK 568



 Score = 80.5 bits (197), Expect(3) = e-152
 Identities = 38/87 (43%), Positives = 57/87 (65%)
 Frame = +3

Query: 357 KKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQ 536
           +K  +   FK F+  V+ ++   + T+RSD G + T KE + +C   GI  +LT+P +PQ
Sbjct: 567 EKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 626

Query: 537 QNGVVKRRNKTIVEMMRSMLNHAKLIK 617
           QNGVV+R+N+TI+EM RSML   +L K
Sbjct: 627 QNGVVERKNRTILEMARSMLKSKRLPK 653


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  404 bits (1039), Expect(3) = e-149
 Identities = 236/704 (33%), Positives = 374/704 (53%), Gaps = 3/704 (0%)
 Frame = +1

Query: 631  ACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSE 810
            A   AVYLLN  P KS+  K P + ++       HLR+F S    H+P E R KLD KSE
Sbjct: 659  AVACAVYLLNRSPTKSVSGKTPQEAWSGRKSGVSHLRVFGSIAHAHVPDEKRSKLDDKSE 718

Query: 811  IGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDI 990
              +F+GY  N+KGY ++NP   K IISR+++F+E+       N +         E+    
Sbjct: 719  KYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEED---- 774

Query: 991  ITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQET 1170
               EP+P+ +     +P     PT  T  +++  S        ++ PR+           
Sbjct: 775  ---EPEPTREEPPSEEPTTP--PTSPTSSQIEESSS-------ERTPRF----------- 811

Query: 1171 SSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELIV 1350
             S Q   + T+  EN+       E E + F+EA     W   + +E + + + DTWEL  
Sbjct: 812  RSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTS 871

Query: 1351 LPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRTL 1530
            LP   K IG KWV   K N++G +E++KARLVAK + Q+ GIDY E FAP  +++T+R +
Sbjct: 872  LPNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYIQRAGIDYDEVFAPVARLETVRLI 931

Query: 1531 IILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIK--DPNXXXXXXXXXXXXXXXP 1704
            I LA  + W+I  +D+K AFL+G++ +E+Y++QP+G+I   + +               P
Sbjct: 932  ISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAP 991

Query: 1705 RAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFKK 1884
            RAW  +++ +   +  IK   +  L Y+  +K   +I   ++DD+  TG N +    FKK
Sbjct: 992  RAWNTRIDKYFKEKDFIKCPYEHAL-YIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKK 1050

Query: 1885 ELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPGV 2064
            E+   FE+T +G   YYLGI++ +    + +  E Y +++L  F+ +      TP++ G+
Sbjct: 1051 EMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGI 1110

Query: 2065 NLLKNNEVKA-NAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNILK 2241
             L K  E +  +  T++S++ SL YLT TR DI +A+  +SR+M+ P+    KAA+ IL+
Sbjct: 1111 KLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILR 1170

Query: 2242 YVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKATIGFLVTLGGNLVSWIS*KLKIV 2421
            Y+K T+N GL +   S  KL  + D+++     D K+T GF+  +G    +W+S K  IV
Sbjct: 1171 YIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIV 1230

Query: 2422 SKSVIEAEYRAIEDTTSEVIWFLQLL*DCGEDIQILVEISTDNEGAMRLVQNPFFHERTK 2601
              S  EAEY A        IW   LL +     +   +I  DN+ A+ L +NP FH+R+K
Sbjct: 1231 VLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSK 1290

Query: 2602 HIEIQAHFIREKFK*RIIDIKHIKTKEQPTDYFTKALGGSKFKK 2733
            HI+ + H+IRE    + + ++++KT +Q  D FTK L    F K
Sbjct: 1291 HIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIK 1334



 Score = 95.9 bits (237), Expect(3) = e-149
 Identities = 44/110 (40%), Positives = 66/110 (60%), Gaps = 3/110 (2%)
 Frame = +1

Query: 43  LCHEENNLIWHNRLGHVNS---KYLKKLEDITKNPNLIMPNNKCTHCCISKAHKTPFPQQ 213
           +C++E + +WH R GH+N    + L + E +   P +  PN  C  C + K  K  FP++
Sbjct: 459 MCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKE 518

Query: 214 SSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 363
           SS RAQ+ LEL+H D+ GP++     K  YFL+FIDD+ +  WVY L+ K
Sbjct: 519 SSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEK 568



 Score = 79.0 bits (193), Expect(3) = e-149
 Identities = 37/87 (42%), Positives = 56/87 (64%)
 Frame = +3

Query: 357 KKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQ 536
           +K  +   FK F+  V+ ++   + T+RSD G + T KE + +C   GI  +LT+P +PQ
Sbjct: 567 EKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 626

Query: 537 QNGVVKRRNKTIVEMMRSMLNHAKLIK 617
           QNGV +R+N+TI+EM RSML   +L K
Sbjct: 627 QNGVAERKNRTILEMARSMLKSKRLPK 653


>gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]
          Length = 1291

 Score =  409 bits (1052), Expect(3) = e-144
 Identities = 238/704 (33%), Positives = 377/704 (53%), Gaps = 3/704 (0%)
 Frame = +1

Query: 631  ACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSE 810
            A   AVYLLN  P KS+  K P + ++   P   HLR+F S    H+P E R KLD KSE
Sbjct: 598  AVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSE 657

Query: 811  IGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDI 990
              +F+GY  N+KGY ++NP   K IISR+++F+E+       N +         E+    
Sbjct: 658  KYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEED---- 713

Query: 991  ITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQET 1170
               EP+P+ +     +P  +  PT  T  +++  S        ++ PR+           
Sbjct: 714  ---EPEPTREEPPSEEPTTR--PTSLTSSQIEESSS-------ERTPRF----------- 750

Query: 1171 SSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELIV 1350
             S Q   + T+  EN+       E E + F+EA     W   + +E + + + DTWEL  
Sbjct: 751  RSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTS 810

Query: 1351 LPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRTL 1530
            LP   KAIG KWV   K N++G +E++KARLVAK ++Q+ GIDY E FAP  +++T+R +
Sbjct: 811  LPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLI 870

Query: 1531 IILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIK--DPNXXXXXXXXXXXXXXXP 1704
            I LA  + W+I  +D K AFL+G+  +E+Y++QP+G+I   + +               P
Sbjct: 871  ISLAAQNKWKIHQMDFKLAFLNGDFEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAP 930

Query: 1705 RAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFKK 1884
            RAW  +++ +   +  IK   +  L Y+  +K   +I   ++DD+  TG N +    FKK
Sbjct: 931  RAWNTRIDKYFKEKDFIKCPYEHAL-YIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKK 989

Query: 1885 ELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPGV 2064
            E+   FE+T +G   YYLGI++ +    + +  E Y +++L  F+ +      TP++ G+
Sbjct: 990  EMTKEFEMTDIGLMSYYLGIEVKQEDNRIFITQEGYAKEVLKKFKMDDSNPVCTPMECGI 1049

Query: 2065 NLLKNNEVKA-NAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNILK 2241
             L K  E +  +  T++S++ SL YLT TR DI +A+  +SR+M+ P+    KAA+ IL+
Sbjct: 1050 KLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILR 1109

Query: 2242 YVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKATIGFLVTLGGNLVSWIS*KLKIV 2421
            Y+K T+N GL +   S  KL  + D+++     D K+T GF+  +G    +W+S K  IV
Sbjct: 1110 YIKGTVNFGLHYSTTSDYKLVGYSDSDWGRDVDDRKSTSGFVFYIGDTAFTWMSKKQPIV 1169

Query: 2422 SKSVIEAEYRAIEDTTSEVIWFLQLL*DCGEDIQILVEISTDNEGAMRLVQNPFFHERTK 2601
            + S  EAEY A        IW   LL +     +   +I  DN+ A+ L +NP FH+R+K
Sbjct: 1170 TLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSK 1229

Query: 2602 HIEIQAHFIREKFK*RIIDIKHIKTKEQPTDYFTKALGGSKFKK 2733
            HI+ + H+IRE    + + ++++KT +Q  D FTK L    F K
Sbjct: 1230 HIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIK 1273



 Score = 79.0 bits (193), Expect(3) = e-144
 Identities = 37/87 (42%), Positives = 56/87 (64%)
 Frame = +3

Query: 357 KKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQ 536
           +K  +   FK F+  V+ ++   + T+RSD G + T KE + +C   GI  +LT+P +PQ
Sbjct: 506 EKSEVFKIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 565

Query: 537 QNGVVKRRNKTIVEMMRSMLNHAKLIK 617
           QNGV +R+N+TI+EM RSML   +L K
Sbjct: 566 QNGVAERKNRTILEMARSMLKSKRLPK 592



 Score = 76.3 bits (186), Expect(3) = e-144
 Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
 Frame = +1

Query: 43  LCHEENNLIWHNRLGHVNS---KYLKKLEDITKNPNLIMPNNKCTHCCISKAHKTPFPQQ 213
           +C++E + +WH R GH+N    + L + E +   P +  PN  C  C + K  K  FP++
Sbjct: 421 MCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKE 480

Query: 214 SSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIF 315
           SS RAQ+PLEL+H D+ GP++    +K   F IF
Sbjct: 481 SSSRAQKPLELIHTDVCGPIKPKSLEKSEVFKIF 514


>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1499

 Score =  389 bits (998), Expect(3) = e-142
 Identities = 238/719 (33%), Positives = 387/719 (53%), Gaps = 18/719 (2%)
 Frame = +1

Query: 631  ACLTAVYLLNYWPNKSIGFKC-PLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKS 807
            A  T+ YL N  P+KS+     P+++++   PS DHL++F   C+ HIP E R+KLD K+
Sbjct: 648  AIATSTYLQNRLPSKSLEKGVTPMEIWSGKKPSVDHLKVFGCVCYIHIPDEKRRKLDTKA 707

Query: 808  EIGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLK-DEINSKTLTKILSMLENKE 984
            + G+F+GY   +KGY ++   E K  +S+DV F+E KT   DE   +     L  + ++E
Sbjct: 708  KQGIFVGYSNESKGYRVFLLNEEKIEVSKDVTFDEKKTWSHDEKGERKAILSLVKINSQE 767

Query: 985  -----DIITPEPQPSN--------KRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKK 1125
                 D+     Q SN         R V N  EE         GE   +SV         
Sbjct: 768  QGGGNDLNAHIDQVSNAFNQLHISSRGVQNSHEE---------GE---ESV--------- 806

Query: 1126 KPRWYRDIINQTQETSSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQK 1305
             PR +R I N   +T+  +           I+    ++ EE  + +EA  + KW   +++
Sbjct: 807  GPRGFRSINNLMDQTNEVEGEAL-------IHEMCLMMAEEPQALEEAMKDEKWIEAMRE 859

Query: 1306 EYEMLVRKDTWELIVLPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYS 1485
            E  M+ +  TWE++  P ++  I  KW+   K +A G   K KARLVA+ F Q+ G+DY 
Sbjct: 860  ELRMIEKNKTWEVVARPKDKNVISVKWIFRLKTDASGEAIKRKARLVARGFTQEYGVDYL 919

Query: 1486 EKFAPTMKIKTIRTLIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFI--KDPNX 1659
            E FAP  +  TIRT++ +A   GW++  +D+K AFL+G++ +E+Y++QP GFI  K+   
Sbjct: 920  ETFAPVSRYDTIRTIMAIAAQQGWKLFQMDVKSAFLNGDLEEEVYIEQPPGFIEEKEEGK 979

Query: 1660 XXXXXXXXXXXXXXPRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDI 1839
                          PRAWY +++ + I  G  +S  D+  FY+ +     ++ + ++DDI
Sbjct: 980  VLKLHKALYGLKQAPRAWYGRIDGYFIKNGFERSINDA-AFYVKKTSKEILVVSLYVDDI 1038

Query: 1840 FLTGQNTTKIIFFKKELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQ 2019
             +TG N  +I  FK+E+++ FE+T LG   Y+LG+++ +  E + L  E Y +KLL  F 
Sbjct: 1039 IVTGSNVKEIERFKEEMKNEFEMTDLGELSYFLGMEVNQDDEGIFLSQENYAKKLLKKFG 1098

Query: 2020 EEKEKGRKTPLDPGVNLLKNNEVKANAVT-YRSIIRSLLYLTYTRSDIHFAICYLSRFMQ 2196
             ++ K   TPL P   + +    K   VT YRS+I  +LYL  +R DI +A  YLSR+M+
Sbjct: 1099 MQECKSVSTPLTPHGKIEEVLSEKLEDVTMYRSMIGGMLYLCASRPDIMYASSYLSRYMR 1158

Query: 2197 EPSELQLKAARNILKYVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKATIGFLVTL 2376
             P +  L+ A+ +L+YVK T+  G+ F+++   +L  F D+++     D K+T G++ T+
Sbjct: 1159 SPLKQHLQEAKRVLRYVKGTLTYGIHFKRVEKPELVGFSDSDWAGSVEDKKSTSGYVFTI 1218

Query: 2377 GGNLVSWIS*KLKIVSKSVIEAEYRAIEDTTSEVIWFLQLL*DCGEDIQILVEISTDNEG 2556
            G     W S K K V++S  EAEY A+    ++ IW  +L+ + G   +  + I  DN+ 
Sbjct: 1219 GSGAFCWNSSKQKTVAQSTAEAEYIAVCSAANQAIWLQRLVNEIGFKAEKGIRIFCDNKS 1278

Query: 2557 AMRLVQNPFFHERTKHIEIQAHFIREKFK*RIIDIKHIKTKEQPTDYFTKALGGSKFKK 2733
            A+ + +NP  H RTKHI+I+ HF+RE  +   I +++   + Q  D  TK L  ++ ++
Sbjct: 1279 AIAIGKNPVQHRRTKHIDIKYHFVREAQQNGKIKLEYCPGELQIADILTKPLNTTRRRR 1337



 Score = 85.1 bits (209), Expect(3) = e-142
 Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
 Frame = +1

Query: 13  VLEKLRDEVMLCHEENNL---IWHNRLGHVNS---KYLKKLEDITKNPNLIMPNNKCTHC 174
           + +K R+E  +  EE      +WH R GHVN    + ++ L+ + K P   +    C  C
Sbjct: 435 IWKKSREETYMAFEEKEEQTDLWHKRFGHVNYDKIETMQTLKIVEKLPKFEVIKGICAAC 494

Query: 175 CISKAHKTPFPQQSSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLL 354
            + K  +  FP++S     + LEL+H D+ GPM+       RYFL FIDD+ +M WVY L
Sbjct: 495 EMGKQSRRSFPKKSQSNTNKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVYFL 554

Query: 355 QRKYQFL 375
           + K + +
Sbjct: 555 KNKSEVI 561



 Score = 84.7 bits (208), Expect(3) = e-142
 Identities = 41/99 (41%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
 Frame = +3

Query: 360 KIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQQ 539
           K  ++  FK+F+  V+NQ+  ++  LR+D G +   +E +  C + GI  E+T PY+PQQ
Sbjct: 557 KSEVITKFKIFKPYVENQSESRIKRLRTDGGGEFLSREFIKLCQESGIHHEITTPYSPQQ 616

Query: 540 NGVVKRRNKTIVEMMRSMLNHAKLI-KGWELCMSYSCIL 653
           NGV +RRN+T+VEM RSM+   KL  K W   ++ S  L
Sbjct: 617 NGVAERRNRTLVEMARSMIEEKKLSNKFWAEAIATSTYL 655


>emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera]
          Length = 1424

 Score =  403 bits (1036), Expect(3) = e-139
 Identities = 236/718 (32%), Positives = 391/718 (54%), Gaps = 10/718 (1%)
 Frame = +1

Query: 640  TAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSEIGM 819
            TAVYLLN  P K++  K P++ ++   PS  H ++F   C+  +PK+ R KLD  SE  +
Sbjct: 727  TAVYLLNRCPTKALLNKTPIEAWSGRKPSVRHFKVFGCLCYSQVPKQRRSKLDETSEKCI 786

Query: 820  FLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDIITP 999
            F+GY   +KGY ++N K  K IISRDVIF+E      E   K L K + +    +++ T 
Sbjct: 787  FMGYSSQSKGYRLYNLKTXKLIISRDVIFDEKVAWNWE-EGKILKKTILV----DELQTK 841

Query: 1000 EP-QPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQETSS 1176
             P +  N     + P+E               SVP +             I + T  +SS
Sbjct: 842  APVETGNGSTSTSSPQESP------------RSVPLSP-----------SIESPTSXSSS 878

Query: 1177 TQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELIVLP 1356
               T ++ + + ++  +  L   E  SF+EA  +  W   ++KE +++ + +TW+L+  P
Sbjct: 879  PSSTPRKMRSLTDVYERCNLCIVEPQSFEEAIKDEDWRKAMEKEIDVIEKNETWQLVEKP 938

Query: 1357 PERKAIGCKWVLS------KKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKT 1518
             +++ IG KW+         KY+++G +++ KARLVAK ++Q+PG D+ E FAP  ++ T
Sbjct: 939  KDKEIIGVKWIFRVKWIFRXKYHSDGRVQRLKARLVAKGYSQQPGXDFHETFAPVARLDT 998

Query: 1519 IRTLIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIKD--PNXXXXXXXXXXXX 1692
            IRT+I +A   GW +  LDIK AFL+G++  EIY++QP+GF+ D   N            
Sbjct: 999  IRTIIAVAAQKGWLLYQLDIKSAFLNGKLEXEIYVEQPQGFVVDGEENKVYKLKKALYGL 1058

Query: 1693 XXXPRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKII 1872
               PRAWY +++++ I  G I+S ++  L+  S++ ++ +I A ++DD+  TG +   + 
Sbjct: 1059 KQAPRAWYTQIDSYFIENGFIRSKSEPTLYVKSKDNSQILIVALYVDDLIFTGNDEKMVE 1118

Query: 1873 FFKKELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPL 2052
             F+ E+   +E++ +G   Y+LGI++ +  + + +  + Y+  +L  F         TPL
Sbjct: 1119 KFRNEMMKKYEMSDMGLLHYFLGIEVYQEEDGVFICQKRYVEHILKKFGMAGCNXVSTPL 1178

Query: 2053 DPGVNLLKNNEVK-ANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAAR 2229
                 L K +  K  +   +RS++ +LLYLT TR DI FA   LSRFM  PS L L AA+
Sbjct: 1179 VVNEKLRKEDGGKMVDETHFRSLVGNLLYLTATRPDIMFAASLLSRFMHYPSHLHLGAAK 1238

Query: 2230 NILKYVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKATIGFLVTLGGNLVSWIS*K 2409
             +L+Y++ T+ LG+ + +   +KL   CD+++     D K+T G+  +LG  ++SW+S K
Sbjct: 1239 RVLRYLQGTVELGIKYFRNIEVKLIGHCDSDWGGCIDDMKSTSGYAFSLGSGVISWVSKK 1298

Query: 2410 LKIVSKSVIEAEYRAIEDTTSEVIWFLQLL*DCGEDIQILVEISTDNEGAMRLVQNPFFH 2589
               V++S  EAEY +    TS+ IW  ++L D  E       +  DN+ A+ + +N  FH
Sbjct: 1299 QGSVAQSSAEAEYISASLATSQAIWLRRILEDIKEKQNEATYLLCDNKSAIAIAKNXVFH 1358

Query: 2590 ERTKHIEIQAHFIREKFK*RIIDIKHIKTKEQPTDYFTKALGGSKFKKFIRTLKLREI 2763
             RT+HI ++ HFI+E      + + + K++EQ  D FTKAL   K   F + L + E+
Sbjct: 1359 SRTRHIAVKYHFIKEVISDGEVQLMYCKSEEQXADIFTKALPLEKLVHFRKLLGVEEL 1416



 Score = 73.2 bits (178), Expect(3) = e-139
 Identities = 35/87 (40%), Positives = 56/87 (64%)
 Frame = +3

Query: 357 KKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQ 536
           +K  + + FK F+  V+ Q+   + TLRSD G + T  +  +FC  +G+  +LT+ Y PQ
Sbjct: 632 QKSEVFSIFKKFKSFVEKQSGCYIKTLRSDRGMEYTSSQFGNFCEDEGVERQLTVAYTPQ 691

Query: 537 QNGVVKRRNKTIVEMMRSMLNHAKLIK 617
           QNGVV+R+N+T++EM ++ML    L K
Sbjct: 692 QNGVVERKNQTVMEMAKAMLYEKGLPK 718



 Score = 71.2 bits (173), Expect(3) = e-139
 Identities = 36/103 (34%), Positives = 53/103 (51%)
 Frame = +1

Query: 55  ENNLIWHNRLGHVNSKYLKKLEDITKNPNLIMPNNKCTHCCISKAHKTPFPQQSSRRAQR 234
           E   +WH R GH+N   LK L                  C     H+  FP+  + RA++
Sbjct: 549 EEAWLWHRRFGHLNFNSLKML------------------CQRKMHHRQSFPKGVAWRAKK 590

Query: 235 PLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 363
            LELVH DI GPM    +   +YF++FIDD+ +M WV+ +++K
Sbjct: 591 VLELVHTDICGPMSTPSQGNNKYFVLFIDDFTRMTWVFFMKQK 633


>gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157|gb|ACN78980.1|
            copia-type polyprotein [Glycine max]
          Length = 1042

 Score =  384 bits (987), Expect(3) = e-136
 Identities = 240/712 (33%), Positives = 375/712 (52%), Gaps = 8/712 (1%)
 Frame = +1

Query: 631  ACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSE 810
            A   AVYL N  P K++  + P + ++   P  DHLR+F S  + H+P + R KLD +SE
Sbjct: 350  AVACAVYLSNRSPTKNVKDQTPQEAWSGVKPRVDHLRVFGSIAYAHVPDQGRFKLDDRSE 409

Query: 811  IGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDI 990
              +F+GY  ++KGY ++NP   K I+SRDV F E+ T   E    T        E  E+ 
Sbjct: 410  KHVFIGYDASSKGYKLYNPNNGKTIVSRDVEFYEEGTWNWEEKEDTYDFFPYFEEIDEEA 469

Query: 991  ITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQET 1170
            +TP           N     + PT +T     N++  ++     ++PR  R+I     ET
Sbjct: 470  LTP-----------NDSTPALSPTPST-----NEASSSSEGSSSERPRRMRNIQELYDET 513

Query: 1171 SSTQPTRKRTKRMENINNQAYL-IEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELI 1347
                         E IN+   L ++ + L+F EA  + +W   +++E + + + +TWEL 
Sbjct: 514  -------------EVINDLFCLFVDSKPLNFDEAMKDKRWRQAMEEEIKAIEKNNTWELS 560

Query: 1348 VLPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRT 1527
             LP   +AIG KWV   K NA+G +E+ KARLVAK + Q+  +DY E FAP  +++TIR 
Sbjct: 561  SLPKGHEAIGVKWVFKIKKNAKGEVERHKARLVAKGYKQQYEVDYDEVFAPVARMETIRL 620

Query: 1528 LIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIKD--PNXXXXXXXXXXXXXXX 1701
            LI LA    W I   D+K AFL+G + +++Y++QP GF+ +                   
Sbjct: 621  LISLAAQMKWRIFQFDVKSAFLNGYLEEDVYVEQPMGFVIEGQEGKVLKLNKALYGLKQA 680

Query: 1702 PRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFK 1881
            PRAW   ++ +    G +    +  L+  +      +    ++DD+  TG N      FK
Sbjct: 681  PRAWNTHIDKYFQDNGFVHCQNEYALYVKTFNNGDVLFICLYVDDLIFTGNNPNLFEDFK 740

Query: 1882 KELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPG 2061
            + +   F++T +G   YYLG+++ +    + +  E Y +++L  F         TP++ G
Sbjct: 741  ESMSREFDMTDMGLMSYYLGMEVKQTQNGIFVSQERYTKEVLKKFNMLDCNPVNTPMEGG 800

Query: 2062 VNLLKNNE-VKANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNIL 2238
            + L K +E  K ++  ++S++ SL YLT TR DI +A+  + RFM+ P+   LKAA+ IL
Sbjct: 801  LKLSKFDEGEKVDSTIFKSLVGSLRYLTNTRPDILYAVGVVCRFMEAPTSPHLKAAKRIL 860

Query: 2239 KYVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKATIGFLVTLGGNLVSWIS*KLKI 2418
             Y+K TI+ GL +   +  KL  FCD+++     D K+T GF+  +G  + +W S K  I
Sbjct: 861  CYLKGTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGI 920

Query: 2419 VSKSVIEAEYRAIEDTTSEVIWFLQLL*DCGEDIQILVEIST----DNEGAMRLVQNPFF 2586
            V+ S  EAEY A    T   IW  +LL    E++Q+L + ST    DN  A  L +NP F
Sbjct: 921  VTLSTCEAEYVAATSCTCHAIWLRRLL----EELQLLQKESTKIYVDNRSAQELAKNPVF 976

Query: 2587 HERTKHIEIQAHFIREKFK*RIIDIKHIKTKEQPTDYFTKALGGSKFKKFIR 2742
            HER+KHI+ + HFIRE    + +++ H+KT++Q  D FTK L   KF+ F R
Sbjct: 977  HERSKHIDTRYHFIRECITKKEVELTHVKTQDQVADIFTKPL---KFEDFRR 1025



 Score = 85.5 bits (210), Expect(3) = e-136
 Identities = 41/112 (36%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
 Frame = +1

Query: 52  EENNLIWHNRLGHVNSKYLKKL--EDITKN-PNLIMPNNKCTHCCISKAHKTPFPQQSSR 222
           ++ +  WH R GH+N   LK L  E + K  P +  PN  C  C + K  +  FP++++ 
Sbjct: 153 KDESWCWHMRFGHLNFGALKSLGEEKMVKGMPQINHPNQLCEACLLGKHARRSFPKEANS 212

Query: 223 RAQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRKYQFLI 378
           RA+ PL+LV+ D+ GP+        +YFL+FIDDY +  WVY L++K +  +
Sbjct: 213 RAKEPLQLVYTDVCGPINPPSCGNNKYFLLFIDDYSRKTWVYFLKQKSEAFV 264



 Score = 68.6 bits (166), Expect(3) = e-136
 Identities = 34/79 (43%), Positives = 49/79 (62%)
 Frame = +3

Query: 381 FKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQQNGVVKRR 560
           FK F+  V+ ++   +  LRSD G + T KE  +FC + GI   LT+P +PQQNGV +R+
Sbjct: 266 FKNFKALVEKESGYVIKALRSDRGGEFTSKEFNEFCEKYGIRRPLTVPRSPQQNGVAERK 325

Query: 561 NKTIVEMMRSMLNHAKLIK 617
           N+TI+ M R ML    + K
Sbjct: 326 NRTILNMTRCMLKAKNMPK 344


>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108711922|gb|ABF99717.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1335

 Score =  382 bits (982), Expect(3) = e-135
 Identities = 233/713 (32%), Positives = 372/713 (52%), Gaps = 17/713 (2%)
 Frame = +1

Query: 640  TAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSEIGM 819
            TAVY+LN  P K++  + P + +    P   H+R+F   C+  +P + R K D+KS+  +
Sbjct: 652  TAVYILNRSPTKAVTNRTPFEAWYGKKPVIGHMRVFGCICYAQVPAQKRVKFDNKSDRCI 711

Query: 820  FLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLE-------- 975
            F+GY    KGY ++N ++ K IISRD IF+E  T   +    + T +L            
Sbjct: 712  FVGYADGIKGYRLYNLEKKKIIISRDAIFDESATWNWKSPEASSTPLLPTTTITLGQPHM 771

Query: 976  ---NKEDIITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICL---KKKPRW 1137
               ++ +  TP PQPS+                 +     +DS P++   +   +  PR 
Sbjct: 772  HGTHEVEDHTPSPQPSSPM---------------SSSSASSDSSPSSEEQISTPESAPRR 816

Query: 1138 YRDIINQTQETSSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEM 1317
             R ++   + TS     ++R        N + +   E  SF+EA  +  W   ++ E  M
Sbjct: 817  VRSMVELLESTS-----QQRGSEQHEFCNYSVV---EPQSFQEAEKHDNWIKAMEDEIHM 868

Query: 1318 LVRKDTWELIVLPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFA 1497
            + + +TWEL+  P +R+ IG KWV   K N +G ++K+KARLVAK F QKPGIDY E +A
Sbjct: 869  IEKNNTWELVDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETYA 928

Query: 1498 PTMKIKTIRTLIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIKD--PNXXXXX 1671
            P  +++TIRT+I LA    W+I  LD+K AFL+G + +EIY++QPEGF      N     
Sbjct: 929  PVARLETIRTIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGENKVFRL 988

Query: 1672 XXXXXXXXXXPRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTG 1851
                      PRAWY +++ + I +G  KS ++  L Y+++     +I + ++DD+  TG
Sbjct: 989  KKALYGLKQAPRAWYSQIDKYFIQKGFAKSISEPTL-YVNKTGTDILIVSLYVDDLIYTG 1047

Query: 1852 QNTTKIIFFKKELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKE 2031
             +   +  FKK++   +E++ LG   Y+LG+++ +  E + +    Y   +L  F+ +  
Sbjct: 1048 NSEKMMQDFKKDMMHTYEMSDLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNC 1107

Query: 2032 KGRKTPLDPG-VNLLKNNEVKANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSE 2208
            K   TPL P      ++   KA+   YRS++ SLLYLT TR DI FA   LSR+M  PS+
Sbjct: 1108 KSVTTPLLPNEKQKARDGADKADPTIYRSLVGSLLYLTATRPDIMFAASLLSRYMSSPSQ 1167

Query: 2209 LQLKAARNILKYVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKATIGFLVTLGGNL 2388
            L   AA+ +L+Y+K T + G+ ++ +   KL  + D+++     D K+T G+  +LG   
Sbjct: 1168 LNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSGYAFSLGS-- 1225

Query: 2389 VSWIS*KLKIVSKSVIEAEYRAIEDTTSEVIWFLQLL*DCGEDIQILVEISTDNEGAMRL 2568
                            EAEY A     S+V+W  +++ D GE       I  D++ A+ +
Sbjct: 1226 ---------------AEAEYVAASKAVSQVVWLRRIMEDLGEKQYQPTTIYCDSKSAIAI 1270

Query: 2569 VQNPFFHERTKHIEIQAHFIREKFK*RIIDIKHIKTKEQPTDYFTKALGGSKF 2727
             +NP  H+RTKHI I+ H+IRE    + + ++  +T EQ  D FTKAL   KF
Sbjct: 1271 SENPVSHDRTKHIAIKYHYIREAVDRQEVKLEFCRTDEQLADIFTKALSKEKF 1323



 Score = 80.9 bits (198), Expect(3) = e-135
 Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
 Frame = +1

Query: 67  IWHNRLGHVNSKYLKKLED---ITKNPNLIMPNNKCTHCCISKAHKTPFPQQSSRRAQRP 237
           +WH R+GH+N + LK L     +   P + + ++ C  C   K  +  FP   + RA  P
Sbjct: 457 LWHKRMGHLNYRALKLLRTKGMVQGLPFITLKSDPCEGCVFGKQIRASFPHSGAWRASAP 516

Query: 238 LELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 363
           LELVH DI G +  + +    YF+ FIDDY +M WVY L+ K
Sbjct: 517 LELVHADIVGKVPTISEGGNWYFITFIDDYTRMIWVYFLKEK 558



 Score = 72.4 bits (176), Expect(3) = e-135
 Identities = 37/89 (41%), Positives = 53/89 (59%)
 Frame = +3

Query: 357 KKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQ 536
           +K   L  FK F+  V+NQ+N+K+  LRSD G +   KE   +C   GI  +LT  Y+ Q
Sbjct: 557 EKSAALEIFKKFKAMVENQSNRKIKVLRSDQGREYISKEFEKYCENAGIRRQLTAGYSAQ 616

Query: 537 QNGVVKRRNKTIVEMMRSMLNHAKLIKGW 623
           QNGV +R+N+TI +M  SML    + K +
Sbjct: 617 QNGVAERKNRTINDMANSMLQDKGMPKSF 645


>gb|ABA95820.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  397 bits (1019), Expect(3) = e-135
 Identities = 236/713 (33%), Positives = 378/713 (53%), Gaps = 17/713 (2%)
 Frame = +1

Query: 640  TAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSEIGM 819
            TA+Y+LN  P K++  + P + +    P   H+R+F   C+  +P + R K D+KS+  +
Sbjct: 442  TAIYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRVFGCICYAQVPAQKRVKFDNKSDRCI 501

Query: 820  FLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLE-------- 975
            F+GY    KGY ++N ++ K II RDVIF+E  T   +    + T +L            
Sbjct: 502  FVGYADGIKGYRLYNLEKKKIIIIRDVIFDESATWNWKSPEASSTPLLPTTTITLGQPHM 561

Query: 976  ---NKEDIITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICL---KKKPRW 1137
               ++ +  TP PQPS+                 +     +DS P++   +   +  PR 
Sbjct: 562  HGTHEVEDHTPSPQPSSPM---------------SSSSASSDSSPSSEEQISTPESAPRR 606

Query: 1138 YRDIINQTQETSSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEM 1317
             R ++   + TS     ++R        N + +   E  SF+EA  +  W   ++ E  M
Sbjct: 607  VRSMVELLESTS-----QQRGSEQHEFCNYSVV---EPQSFQEAEKHDNWIKAMEDEIHM 658

Query: 1318 LVRKDTWELIVLPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFA 1497
            + + +TWEL+  P +R+ IG KWV   K N +G ++K+KARLVAK F QKPGIDY E +A
Sbjct: 659  IEKNNTWELVDRPRDREVIGVKWVYKTKLNLDGSVQKYKARLVAKGFKQKPGIDYYETYA 718

Query: 1498 PTMKIKTIRTLIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIKD--PNXXXXX 1671
            P  +++TIRT+I LA    W+I  LD+K AFL+G + +EIY++QPEGF      N     
Sbjct: 719  PVARLETIRTIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGENKVFRL 778

Query: 1672 XXXXXXXXXXPRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTG 1851
                      PR WY +++ + I +G  KS ++  L Y+++     +I + ++DD+  TG
Sbjct: 779  KKALYGLKQAPRVWYSQIDKYFIQKGFAKSISEPTL-YVNKTGTDILIVSLYVDDLIYTG 837

Query: 1852 QNTTKIIFFKKELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKE 2031
             +   +  FKK++   +E++ LG   Y+LG+++ +  E + +    Y   +L  F+ +  
Sbjct: 838  NSEKMMQDFKKDMMHTYEMSDLGLLYYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNC 897

Query: 2032 KGRKTPLDPGVNL-LKNNEVKANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSE 2208
            K   TPL P      ++   K +   YRS++ SLLYLT TR DI FA   LSR+M  PS+
Sbjct: 898  KSVTTPLLPNEKQKARDGADKVDPTIYRSLVGSLLYLTATRPDIMFAASLLSRYMSSPSQ 957

Query: 2209 LQLKAARNILKYVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKATIGFLVTLGGNL 2388
            L   AA+ +L+Y+K T + G+ ++ +   KL  + D+++     D K T G+  +LG  +
Sbjct: 958  LNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKGTSGYAFSLGSGM 1017

Query: 2389 VSWIS*KLKIVSKSVIEAEYRAIEDTTSEVIWFLQLL*DCGEDIQILVEISTDNEGAMRL 2568
             SW + K  IV+ S  EAEY A     S+V+W  +++ D GE       I  D++ A+ +
Sbjct: 1018 CSWSTKKQNIVALSSAEAEYVAASKAVSQVVWLRRIMEDLGEKQYQPTTIYCDSKSAIAI 1077

Query: 2569 VQNPFFHERTKHIEIQAHFIREKFK*RIIDIKHIKTKEQPTDYFTKALGGSKF 2727
             +NP  H+RTKHI I+ H+IRE    + + ++  +T EQ  D FTKAL   KF
Sbjct: 1078 SENPVSHDRTKHIAIKYHYIREAVDRQEVKLEFCRTDEQLADIFTKALSKEKF 1130



 Score = 72.8 bits (177), Expect(3) = e-135
 Identities = 37/89 (41%), Positives = 53/89 (59%)
 Frame = +3

Query: 357 KKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQ 536
           +K   L  FK F+  V+NQ+N+K+  LRSD G +   KE   +C   GI  +LT  Y+ Q
Sbjct: 347 EKSAALEIFKKFKAMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTAGYSTQ 406

Query: 537 QNGVVKRRNKTIVEMMRSMLNHAKLIKGW 623
           QNGV +R+N+TI +M  SML    + K +
Sbjct: 407 QNGVAERKNRTINDMANSMLQDKGMPKSF 435



 Score = 65.1 bits (157), Expect(3) = e-135
 Identities = 30/76 (39%), Positives = 42/76 (55%)
 Frame = +1

Query: 136 PNLIMPNNKCTHCCISKAHKTPFPQQSSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIF 315
           P + + ++ C  C   K  +  FP   + RA  PLELVH DI G +  + +    YF+ F
Sbjct: 273 PFITLKSDPCEGCVFGKQIRASFPHSGAWRASAPLELVHTDIVGKVPTISEGGNWYFITF 332

Query: 316 IDDYIKMNWVYLLQRK 363
           IDDY +M WVY L+ K
Sbjct: 333 IDDYTRMIWVYFLKEK 348


>gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1347

 Score =  379 bits (974), Expect(3) = e-134
 Identities = 237/719 (32%), Positives = 384/719 (53%), Gaps = 10/719 (1%)
 Frame = +1

Query: 631  ACLTAVYLLNYWPNKSIGFKC-PLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKS 807
            A  T+ YL N  P+K+I     P++ +    P+  HLRIF S C+ HIP + R+KLD K+
Sbjct: 637  AVYTSAYLQNRLPSKAIEDDVTPMEKWCGHKPNVSHLRIFGSICYVHIPDQKRRKLDAKA 696

Query: 808  EIGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLK-DEINSKTLTKILSMLENKE 984
            + G+ +GY   TKGY ++  ++ K  +SRDV+F+EDK    D+      T ++S+ + +E
Sbjct: 697  KCGILIGYSNQTKGYRVFLLEDEKVEVSRDVVFQEDKKWDWDKQEEVKKTFVMSINDIQE 756

Query: 985  DIITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQ 1164
                 E    +  ++ +        T + V    ND     T    KK +  ++I+ +  
Sbjct: 757  SRDQQETSSHDLSQIDDHANNGEGETSSHVLSQVNDQEERETSESPKKYKSMKEILEKA- 815

Query: 1165 ETSSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWEL 1344
                  P  +  +  + I     +  EE  ++ EA  + +W   + +E +++ +  TW+L
Sbjct: 816  ------PRMENDEAAQGIE-ACLVANEEPQTYDEARGDKEWEEAMNEEIKVIEKNRTWKL 868

Query: 1345 IVLPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIR 1524
            +  P ++  I  KW+   K +A G   K KARLVA+ F+Q+ GIDY E FAP  +  TIR
Sbjct: 869  VDKPEKKNVISVKWIYKIKTDASGNHVKHKARLVARGFSQEYGIDYLETFAPVSRYDTIR 928

Query: 1525 TLIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIKD--PNXXXXXXXXXXXXXX 1698
             L+  A    W +  +D+K AFL+GE+ +E+Y+ QP GF+ +                  
Sbjct: 929  ALLAYAAQMKWRLYQMDVKSAFLNGELEEEVYVTQPPGFVIEGKEEKVLRLYKALYGLKQ 988

Query: 1699 XPRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPV-ITAFHIDDIFLTGQNTTKIIF 1875
             PRAWYE+++++ I  G  +S  D+ L+  S++K   V I + ++DD+ +TG NT  I  
Sbjct: 989  APRAWYERIDSYFIQNGFARSMNDAALY--SKKKGEDVLIVSLYVDDLIITGNNTHLINT 1046

Query: 1876 FKKELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLD 2055
            FKK ++D FE+T LG   Y+LG+++ +    + L  E Y  KL+  F  ++ K   TPL 
Sbjct: 1047 FKKNMKDEFEMTDLGLLNYFLGMEVNQDDSGIFLSQEKYANKLIDKFGMKESKSVSTPLT 1106

Query: 2056 P-----GVNLLKNNEVKANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLK 2220
            P     GV    +++  A+   YR I+  LLYL  +R D+ +A  YLSR+M  PS    +
Sbjct: 1107 PQGKRKGVE--GDDKEFADPTKYRRIVGGLLYLCASRPDVMYASSYLSRYMSSPSIQHYQ 1164

Query: 2221 AARNILKYVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKATIGFLVTLGGNLVSWI 2400
             A+ +L+YVK T N G+ F      +L  + D+++     D K+T G++ TLG  +  W 
Sbjct: 1165 EAKRVLRYVKGTSNFGVLFTSKETPRLVGYSDSDWGGSLEDKKSTTGYVFTLGLAMFCWQ 1224

Query: 2401 S*KLKIVSKSVIEAEYRAIEDTTSEVIWFLQLL*DCGEDIQILVEISTDNEGAMRLVQNP 2580
            S K + V++S  EAEY A+   T++ IW  +L  D G   +  + I  DN+ A+ + +NP
Sbjct: 1225 SCKQQTVAQSTAEAEYIAVCAATNQAIWLQRLFEDFGLKFKEGIPILCDNKSAIAIGRNP 1284

Query: 2581 FFHERTKHIEIQAHFIREKFK*RIIDIKHIKTKEQPTDYFTKALGGSKFKKFIRTLKLR 2757
              H RTKHIEI+ HF+RE     +I +++ K ++Q  D  TKAL  S+F+   R L ++
Sbjct: 1285 VQHRRTKHIEIKYHFVREAEHKGLIQLEYCKGEDQLADVLTKALSVSRFEGLRRKLGVK 1343



 Score = 90.1 bits (222), Expect(3) = e-134
 Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
 Frame = +1

Query: 16  LEKLRDEVMLCHEENNLIWHNRLGHVNSKYLKKLED---ITKNPNLIMPNNKCTHCCISK 186
           L  + +E M  + +    WH RLGHV++K L++++D   +   P   +    C  C + K
Sbjct: 438 LSSVEEEAMTANVQTEETWHKRLGHVSNKRLQQMQDKELVNGLPRFKVTKETCKACNLGK 497

Query: 187 AHKTPFPQQSSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 363
             +  FP++S  + +  LE+VH D+ GPM+       RY+++F+DDY  M WVY L++K
Sbjct: 498 QSRKSFPKESQTKTREKLEIVHTDVCGPMQHQSIDGSRYYVLFLDDYTHMCWVYFLKQK 556



 Score = 62.4 bits (150), Expect(3) = e-134
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
 Frame = +3

Query: 378 TFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQQNGVVKR 557
           TFK F+  V+ Q+N  + TLR           M  FC  +GI  ++T+PY+PQQNG  +R
Sbjct: 562 TFKKFKALVEKQSNCSIKTLRP----------MEVFCEDEGINRQVTLPYSPQQNGAAER 611

Query: 558 RNKTIVEMMRSMLNHAKL-IKGW 623
           +N+++VEM RSML    L +K W
Sbjct: 612 KNRSLVEMARSMLVEQDLPLKLW 634


>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1333

 Score =  360 bits (925), Expect(3) = e-130
 Identities = 214/706 (30%), Positives = 353/706 (50%), Gaps = 4/706 (0%)
 Frame = +1

Query: 631  ACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSE 810
            A  T VY LN  P K +    PL+ +N   P   HLRIF   C  +       KLD KS 
Sbjct: 635  AVATVVYFLNISPTKDVWNTTPLEAWNGKKPRVSHLRIFG--CIAYALVNFHSKLDEKST 692

Query: 811  IGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDI 990
              +F+GY   +K Y ++NP   K IISR+V+F ED +     NS  +   + +L   E+ 
Sbjct: 693  KCIFVGYSLQSKAYRLYNPISGKVIISRNVVFNEDVSWN--FNSGNMMSNIQLLPTDEES 750

Query: 991  ITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKN-DSVPTNTICLKKKPRWYRDIINQTQE 1167
                    N   V +     + P+     +  + + +P      +KKP            
Sbjct: 751  AVDFGNSPNSSPVSSSVSSPIAPSTTVAPDESSVEPIPLRRSTREKKPN----------- 799

Query: 1168 TSSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELI 1347
                     +     N + Q  L+  + + ++EA    +W   + +E + + R  TWEL+
Sbjct: 800  --------PKYSNTVNTSCQFALLVSDPICYEEAVEQSEWKNAMIEEIQAIERNSTWELV 851

Query: 1348 VLPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRT 1527
              P  +  IG KWV   KYNA+G ++K KARLVAK ++Q+ G+D+ E F+P  + +T+R 
Sbjct: 852  DAPEGKNVIGLKWVFRTKYNADGSIQKHKARLVAKGYSQQQGVDFDETFSPVARFETVRV 911

Query: 1528 LIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFI--KDPNXXXXXXXXXXXXXXX 1701
            ++ LA      +   D+K AFL+G++ +E+Y+ QP+GF+   + N               
Sbjct: 912  VLALAAQLHLPVYQFDVKSAFLNGDLEEEVYVSQPQGFMITGNENKVYKLRKALYGLKQA 971

Query: 1702 PRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFK 1881
            PRAWY K+++     G  +S  +  L+   +  +  ++   ++DD+   G + + +  FK
Sbjct: 972  PRAWYSKIDSFFQGSGFRRSDNEPTLYLKKQGTDEFLLVCLYVDDMIYIGSSKSLVNDFK 1031

Query: 1882 KELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPG 2061
              +   FE++ LG  +Y+LG+++ +  + + +  + Y   LL  FQ    +   TP++  
Sbjct: 1032 SNMMRNFEMSDLGLLKYFLGLEVIQDKDGIFISQKKYAEDLLKKFQMMNCEVATTPMNIN 1091

Query: 2062 VNLLK-NNEVKANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNIL 2238
              L + +   KAN   +RS++  L YLT+TR DI F++  +SRF+Q P++    AA+ +L
Sbjct: 1092 EKLQRADGTEKANPKLFRSLVGGLNYLTHTRPDIAFSVSVVSRFLQSPTKQHFGAAKRVL 1151

Query: 2239 KYVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKATIGFLVTLGGNLVSWIS*KLKI 2418
            +YV  T + G+ + K    +L  F D++Y     D K+T G   + G  +V+W S K + 
Sbjct: 1152 RYVAGTTDFGIWYSKAPNFRLVGFTDSDYAGCLDDRKSTSGSCFSFGSGVVTWSSKKQET 1211

Query: 2419 VSKSVIEAEYRAIEDTTSEVIWFLQLL*DCGEDIQILVEISTDNEGAMRLVQNPFFHERT 2598
            V+ S  EAEY A      + +W  +LL D   + +   EI +D++ A+ + +NP FH RT
Sbjct: 1212 VALSTSEAEYTAASLAARQALWLRKLLEDFSYEQKESTEIFSDSKSAIAMAKNPSFHGRT 1271

Query: 2599 KHIEIQAHFIREKFK*RIIDIKHIKTKEQPTDYFTKALGGSKFKKF 2736
            KHI++Q HFIR       I +K   T EQ  D FTK+L  +K + F
Sbjct: 1272 KHIDVQYHFIRTLVADGRIVLKFCSTNEQAADIFTKSLPQAKHEYF 1317



 Score = 80.5 bits (197), Expect(3) = e-130
 Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
 Frame = +1

Query: 16  LEKLRDEVMLCHEENNL-IWHNRLGHVNSKYLKKLEDITKNPNLIMPNNK----CTHCCI 180
           +  + +  ++  E+N   +WH R GH+N  +LK L  + K+  + +PN K    C  C  
Sbjct: 426 ISNVGNSALVVKEKNETNLWHLRYGHLNVNWLKLL--VQKDMVIGLPNIKELDLCEGCIY 483

Query: 181 SKAHKTPFPQQSSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQR 360
            K  +  FP   S RA   LELVH D+ GPM+M      RYFL+F DDY + +WVY L+ 
Sbjct: 484 GKQTRKSFPVGKSWRATTCLELVHADLCGPMKMESLGGSRYFLMFTDDYSRFSWVYFLKF 543

Query: 361 K 363
           K
Sbjct: 544 K 544



 Score = 75.5 bits (184), Expect(3) = e-130
 Identities = 36/79 (45%), Positives = 50/79 (63%)
 Frame = +3

Query: 360 KIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQQ 539
           K     TFK F+  V+NQ+  K+ +LR+D G +    +   FC + GI  ELT PY P+Q
Sbjct: 544 KSETFETFKKFKAFVENQSGNKIKSLRTDRGGEFLSNDFNLFCEENGIRRELTAPYTPEQ 603

Query: 540 NGVVKRRNKTIVEMMRSML 596
           NGV +R+N+T+VEM RS L
Sbjct: 604 NGVAERKNRTVVEMARSSL 622


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1272

 Score =  333 bits (854), Expect(3) = e-128
 Identities = 214/703 (30%), Positives = 337/703 (47%), Gaps = 2/703 (0%)
 Frame = +1

Query: 631  ACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSE 810
            A   AVYLLN  P KS+  K P + ++   P   HLR+F S    H+P E R KLD KSE
Sbjct: 659  AVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSE 718

Query: 811  IGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDI 990
              +F+GY  N+KGY ++NP   K IISR+++F+E+       N +         E+K + 
Sbjct: 719  KYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDKPEP 778

Query: 991  ITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQET 1170
               EP PS         E    PT  T  +++  S        ++ PR+           
Sbjct: 779  TREEP-PSE--------EPTTPPTSPTSSQIEESSS-------ERTPRF----------- 811

Query: 1171 SSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELIV 1350
             S Q   + T+  EN+       E E + F+EA     W   + +E + + + DTWEL  
Sbjct: 812  RSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTS 871

Query: 1351 LPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRTL 1530
            LP   KAIG KWV   K N++G +E++KARLVAK ++Q+ GIDY E FAP  +++T+R +
Sbjct: 872  LPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVRLI 931

Query: 1531 IILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIK--DPNXXXXXXXXXXXXXXXP 1704
            I LA  + W+I  +D+K AFL+G++ +E+Y++QP+G+I   + +               P
Sbjct: 932  ISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAP 991

Query: 1705 RAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFKK 1884
            RAW  +++ +   +  IK   +  L Y+  +K   +I   ++DD+  TG N +    FKK
Sbjct: 992  RAWNTRIDKYFKEKDFIKCPYEHAL-YIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKK 1050

Query: 1885 ELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPGV 2064
            E+   FE+T +G   YYLGI++ +    + +  E Y +++L  F+ +             
Sbjct: 1051 EMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNP--------- 1101

Query: 2065 NLLKNNEVKANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNILKY 2244
                            S++ SL YLT TR DI +A+  +SR+M+ P+    KAA+ IL+Y
Sbjct: 1102 ----------------SLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRY 1145

Query: 2245 VKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKATIGFLVTLGGNLVSWIS*KLKIVS 2424
            +K T+N GL +   S                                             
Sbjct: 1146 IKGTVNFGLHYSTTS--------------------------------------------- 1160

Query: 2425 KSVIEAEYRAIEDTTSEVIWFLQLL*DCGEDIQILVEISTDNEGAMRLVQNPFFHERTKH 2604
                  +Y+ +       IW   LL +     +   +I  DN+ A+ L +NP FH+R+KH
Sbjct: 1161 ------DYKLV---VCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKH 1211

Query: 2605 IEIQAHFIREKFK*RIIDIKHIKTKEQPTDYFTKALGGSKFKK 2733
            I+ + H+IRE    + + ++++KT +Q  D FTK L    F K
Sbjct: 1212 IDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIK 1254



 Score = 97.1 bits (240), Expect(3) = e-128
 Identities = 44/110 (40%), Positives = 66/110 (60%), Gaps = 3/110 (2%)
 Frame = +1

Query: 43  LCHEENNLIWHNRLGHVNS---KYLKKLEDITKNPNLIMPNNKCTHCCISKAHKTPFPQQ 213
           +C++E + +WH R GH+N    + L + E +   P +  PN  C  C +    K  FP++
Sbjct: 459 MCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKE 518

Query: 214 SSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 363
           SS RAQ+PLEL+H D+ GP++     K  YFL+FIDD+ +  WVY L+ K
Sbjct: 519 SSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEK 568



 Score = 79.3 bits (194), Expect(3) = e-128
 Identities = 37/87 (42%), Positives = 57/87 (65%)
 Frame = +3

Query: 357 KKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQ 536
           +K  +   FK F+  V+ ++   + T+RSD+G + T KE + +C   GI  +LT+P +PQ
Sbjct: 567 EKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 626

Query: 537 QNGVVKRRNKTIVEMMRSMLNHAKLIK 617
           QNGV +R+N+TI+EM RSML   +L K
Sbjct: 627 QNGVAERKNRTILEMARSMLKSKRLPK 653


>emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group]
          Length = 1314

 Score =  353 bits (905), Expect(3) = e-127
 Identities = 224/711 (31%), Positives = 360/711 (50%), Gaps = 15/711 (2%)
 Frame = +1

Query: 640  TAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSEIGM 819
            TAVY+LN  P K++  + P + +    P   H+R+F   C+  +P + R K D+KS   +
Sbjct: 659  TAVYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRVFACICYAQVPAQKRVKFDNKSNRCI 718

Query: 820  FLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLE-------- 975
            F+GY    KGY ++N ++ K IISRDV F+E  T   +    + T +L            
Sbjct: 719  FVGYADGIKGYRLYNLEKKKIIISRDVFFDESATWNWKSPEASSTPLLPTTTITLGQPHM 778

Query: 976  ---NKEDIITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICL---KKKPRW 1137
               ++ +  TP PQPS+                 +     +DS P++   +   +  PR 
Sbjct: 779  HGTHEVEDHTPSPQPSSPM---------------SSSSASSDSSPSSEEQISTPESAPRR 823

Query: 1138 YRDIINQTQETSSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEM 1317
             R ++   + TS     ++R        N + +   E  SF+EA  +  W   ++ E  M
Sbjct: 824  VRSMVELLESTS-----QQRGSEQHEFCNYSVV---EPQSFQEAEKHDNWIKAMEDEIHM 875

Query: 1318 LVRKDTWELIVLPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFA 1497
            + + +TWE +  P +R+ IG KWV   K N +G ++K+KARLVAK F QKPGIDY E +A
Sbjct: 876  IEKNNTWEFVDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETYA 935

Query: 1498 PTMKIKTIRTLIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIKDPNXXXXXXX 1677
            P  +++TIRT+I LA    W+I  LD+K AFL+G + +EIY++QPE F            
Sbjct: 936  PVARLETIRTIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEWF------------ 983

Query: 1678 XXXXXXXXPRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQN 1857
                           ++     +G  KS ++  L Y+++     +I + ++DD+  TG +
Sbjct: 984  --------------SVQGGENKKGFAKSISEPTL-YVNKTGTDILIVSLYVDDLIYTGNS 1028

Query: 1858 TTKIIFFKKELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKG 2037
               +  FKK++   +E++ LG   Y+LG+++ +  E + +    Y   +L  F+ +  K 
Sbjct: 1029 DKMMQDFKKDMMHTYEMSDLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNCKS 1088

Query: 2038 RKTPLDPGVNL-LKNNEVKANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQ 2214
              TPL P      ++   KA+   YRS++ SLLYLT TR DI FA   LSR+M  PS+L 
Sbjct: 1089 VTTPLLPNEKQKARDGADKADPTIYRSLVGSLLYLTATRPDIMFAASLLSRYMSSPSQLN 1148

Query: 2215 LKAARNILKYVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKATIGFLVTLGGNLVS 2394
              AA+ +L+Y+K T + G+ ++ +   KL  + D+++     D K+T G+  +LG     
Sbjct: 1149 FTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSGYAFSLGS---- 1204

Query: 2395 WIS*KLKIVSKSVIEAEYRAIEDTTSEVIWFLQLL*DCGEDIQILVEISTDNEGAMRLVQ 2574
                          EAEY A     S+V+W  +++ D GE       I  D++ A+ + +
Sbjct: 1205 -------------AEAEYVAASKAVSQVVWLRRIMEDQGEKQYQPTTIYCDSKSAIAISE 1251

Query: 2575 NPFFHERTKHIEIQAHFIREKFK*RIIDIKHIKTKEQPTDYFTKALGGSKF 2727
            NP  H+RTKHI I+ H+IRE    + + ++  +T EQ  D FTKAL   KF
Sbjct: 1252 NPVSHDRTKHIAIKYHYIREAVDRQEVKLEFCRTDEQLADIFTKALSKEKF 1302



 Score = 80.1 bits (196), Expect(3) = e-127
 Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
 Frame = +1

Query: 67  IWHNRLGHVNSKYLKKLED---ITKNPNLIMPNNKCTHCCISKAHKTPFPQQSSRRAQRP 237
           +WH R+GH+N + LK L     +   P + + ++ C  C   K  +  FP   + RA  P
Sbjct: 464 LWHKRMGHLNYRALKLLRTKGMVQGLPFITLKSDPCEGCVFGKQIQASFPHSGAWRASAP 523

Query: 238 LELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 363
            ELVH DI G +  M +    YF+ FIDDY +M WVY L+ K
Sbjct: 524 FELVHTDIVGKVPTMSEGGNWYFITFIDDYTRMIWVYFLKEK 565



 Score = 74.7 bits (182), Expect(3) = e-127
 Identities = 38/89 (42%), Positives = 54/89 (60%)
 Frame = +3

Query: 357 KKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQ 536
           +K   L TFK F+  V+NQ+N+K+  LRSD G +   KE   +C   GI  +LT  Y+ Q
Sbjct: 564 EKSAALETFKKFKVMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTTGYSAQ 623

Query: 537 QNGVVKRRNKTIVEMMRSMLNHAKLIKGW 623
           QNGV +R+N+TI +M  SML    + K +
Sbjct: 624 QNGVAERKNRTINDMANSMLQDKGMPKSF 652


>gb|ABW74566.1| integrase [Boechera divaricarpa]
          Length = 1165

 Score =  367 bits (943), Expect(3) = e-127
 Identities = 221/704 (31%), Positives = 357/704 (50%), Gaps = 5/704 (0%)
 Frame = +1

Query: 640  TAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSEIGM 819
            TAVYLLN  P K++  + P + +    P   HLR+F S C+  I    RKKLD KSE  +
Sbjct: 474  TAVYLLNISPTKAVLNRTPYEAWCGRKPGVSHLRVFGSVCYSLIDAHNRKKLDEKSEKCI 533

Query: 820  FLGYPPNTKGYIIWNPKECKEIISRDVIFEEDK--TLKDEINSKTLTKILSMLENKEDII 993
            FLGY   +KGY ++NP   K + SR+V F+E+   T ++  N + L +I    E +E+  
Sbjct: 534  FLGYCSQSKGYRLYNPVSGKIVESRNVTFDEEAVWTWREGDNGE-LVEIFVNDEQEEN-- 590

Query: 994  TPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQETS 1173
               P P+N             P  N  G   +D   +++I   +K R  R+I  +     
Sbjct: 591  ---PSPANSATNTPASSAPSSPGPNN-GNGSSDGEGSSSISPPQKFRSLREIYEEQHAFF 646

Query: 1174 STQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELIVL 1353
            S  P                      ++  EA    +W   +++E   + +  TW+L+ L
Sbjct: 647  SADP----------------------VTVNEAATKEEWRKAMEEEIASIEKNQTWQLVEL 684

Query: 1354 PPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRTLI 1533
            P E+ +IG KWV   KY A+  ++K+KARLV K + Q+ G+DY + F+P  +  T+RTL+
Sbjct: 685  PEEKHSIGVKWVFKTKYQADDNIQKYKARLVVKGYAQEYGVDYEKTFSPVARFDTLRTLL 744

Query: 1534 ILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIKD--PNXXXXXXXXXXXXXXXPR 1707
             L  +  W I   D+K AFL+GE+ +E+Y+ QPEGFI +                   PR
Sbjct: 745  ALGAYMHWPIYQFDVKSAFLNGELREEVYVDQPEGFIVEGREGFVYRLYKALYGLKQAPR 804

Query: 1708 AWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFKKE 1887
            AWY K++++    G  +S ++  L+   +     ++   ++DD+   G + + +  FK  
Sbjct: 805  AWYNKIDSYFAETGFERSKSEPTLYIKKQGAGDILVVCLYVDDMIYMGSSASLVSEFKAS 864

Query: 1888 LEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPGVN 2067
            + + FE+T LG   ++LG+++ +  + + +    Y   LL  F        +TP++    
Sbjct: 865  MMEKFEMTDLGLLYFFLGLEVKQVEDGVFVSQHKYACDLLKRFDMAGCNAVETPMNVNEK 924

Query: 2068 LLKNNEV-KANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNILKY 2244
            LL  +   KA+A  +RS++  L+YLT+TR DI FA+  +SRFM  P++    AA+ +L+Y
Sbjct: 925  LLAGDGTEKADATKFRSLVGGLIYLTHTRPDICFAVSAISRFMHGPTKQHFGAAKRLLRY 984

Query: 2245 VKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKATIGFLVTLGGNLVSWIS*KLKIVS 2424
            +  T   GL +  +S  KL  F D+++     D K+T G +  LG   V W S K  + +
Sbjct: 985  IARTAEYGLWYCSVSKFKLVGFTDSDWAGCVQDRKSTSGHVFNLGSGAVCWSSKKQNVTA 1044

Query: 2425 KSVIEAEYRAIEDTTSEVIWFLQLL*DCGEDIQILVEISTDNEGAMRLVQNPFFHERTKH 2604
             S  EAEY A      + +W  ++L D  ++ +    I  DN+  + + +NP +H RTKH
Sbjct: 1045 LSSSEAEYTAATAAACQAVWLRRILADIKQEQEKATTIFCDNKATIAMNKNPAYHGRTKH 1104

Query: 2605 IEIQAHFIREKFK*RIIDIKHIKTKEQPTDYFTKALGGSKFKKF 2736
            I I+ HFIR+      + +++  T EQ  D  TKAL  +KF  F
Sbjct: 1105 ISIKVHFIRDLVSEGSVTLEYCSTNEQSADVLTKALSRNKFDYF 1148



 Score = 72.8 bits (177), Expect(3) = e-127
 Identities = 35/77 (45%), Positives = 49/77 (63%)
 Frame = +3

Query: 381 FKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQQNGVVKRR 560
           FK F+  V+ Q+ Q++  LR+D G + T  +   FC ++GI  ELT  Y P+QNGV +R+
Sbjct: 387 FKNFKALVEKQSEQQVKVLRTDRGGEFTSTKFNQFCEKEGIHHELTTAYTPEQNGVAERK 446

Query: 561 NKTIVEMMRSMLNHAKL 611
           N T+VEM RSML    L
Sbjct: 447 NTTVVEMARSMLKERNL 463



 Score = 66.2 bits (160), Expect(3) = e-127
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
 Frame = +1

Query: 73  HNRLGHVNSKYLKKL--EDITKNPNLIMPNNKCTHCCISKAHKTPFPQQSSRRAQRPLEL 246
           H R GH++   L+ L  +D+      I     C  C   K  +  FP   +RRA + LE+
Sbjct: 282 HLRYGHLHENGLRVLNQKDMVIGLPKIGALKLCEGCVYGKQSRRSFPVGRARRATQYLEI 341

Query: 247 VHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 363
           VH D+ GPM+       +YFL+  DDY +M+WVY L+ K
Sbjct: 342 VHADLCGPMQTASLGGSKYFLMLTDDYSRMSWVYFLKSK 380


>emb|CAD41731.1| OSJNBb0034I13.10 [Oryza sativa Japonica Group]
          Length = 1425

 Score =  355 bits (910), Expect(3) = e-125
 Identities = 234/738 (31%), Positives = 370/738 (50%), Gaps = 24/738 (3%)
 Frame = +1

Query: 631  ACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSE 810
            A + AVY+LN  P K++    P + ++   PS +HLR+F    +    K   +KLD +  
Sbjct: 708  AVVAAVYVLNRSPTKALDGVTPYEAWHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGT 767

Query: 811  IGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDI 990
              +F+GY   +K Y +++P   +  +SRDV+F+E  T                  + ED 
Sbjct: 768  RMVFIGYEQGSKAYRMYDPVAQRVCVSRDVVFDETATWA--------------WRDPEDA 813

Query: 991  ITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSV-----PTNTICLKKKPRWYRD--I 1149
             T E + +     V+     V P+    GE     V     P +T  L   PR       
Sbjct: 814  ATEEEEFT-----VDFFVSPVAPSVADAGEQTGTPVQAGVSPVSTGVLSSPPRAPNGEFC 868

Query: 1150 INQTQETSSTQPTRKRTKRMENI------------NNQAYLIEEEILSFKEAFNNPKWNT 1293
               T  T  T     R +R+++I            ++Q  +  EE  SF EA  +  W  
Sbjct: 869  TPPTSVTPETDGGPVRYRRVQDILSTTEPVLDFDYSDQCLIATEEPTSFVEAEKHECWRR 928

Query: 1294 TIQKEYEMLVRKDTWELIVLPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPG 1473
             + +E   +    TW L  LP   KAIG KWV   K +  G + K KARLVAK + Q+ G
Sbjct: 929  AMVEELRSVEENQTWSLAELPAGHKAIGLKWVYKLKKDPSGAIVKHKARLVAKGYVQQQG 988

Query: 1474 IDYSEKFAPTMKIKTIRTLIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIKDP 1653
            +D+ E FAP  +++T+R L+ LA   GWEI H+D+K AFL+GE+ +E+Y+ QP GF    
Sbjct: 989  VDFDEVFAPVARMETVRLLVALAAQKGWEIHHMDVKSAFLNGELEEEVYVVQPPGFDDKT 1048

Query: 1654 N--XXXXXXXXXXXXXXXPRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFH 1827
            N                 PRAW  KL+N L++    KS T+S + Y+    +  +I   +
Sbjct: 1049 NASKVLKLRKALYGLRQAPRAWNAKLDNTLLSLKFNKSATESAV-YVRGVGDSKLIVGVY 1107

Query: 1828 IDDIFLTGQNTTKIIFFKKELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLL 2007
            +DD+ +TG    +I  FK +++  F ++ LG   YYLG+++ + GE + L   AY  K+L
Sbjct: 1108 VDDLIITGSQKKEIDAFKLQMKQRFNMSDLGFLSYYLGMEVVQKGEGIFLSQSAYAGKIL 1167

Query: 2008 VSFQEEKEKGRKTPLDPGVNLLKNNEVK-ANAVTYRSIIRSLLYLTYTRSDIHFAICYLS 2184
                 E     + P++  + L K    +  +   YRSI+ SL YL  TR D+ +++ Y+S
Sbjct: 1168 EKTGMEGCNPTQVPMEARLKLSKEGTGECVDPTEYRSIVGSLRYLVNTRPDLAYSVGYVS 1227

Query: 2185 RFMQEPSELQLKAARNILKYVKETINLGLPF--EKISPLKLQAFCDTNYTDRGSDGKATI 2358
            RFM++P+     A ++IL+Y+  TI  G  +  E++   KL  F D++      D K+T 
Sbjct: 1228 RFMEKPTSEHWAAVKHILRYISGTIKTGCWYGREEVGNAKLVGFSDSDMAGDLDDRKSTT 1287

Query: 2359 GFLVTLGGNLVSWIS*KLKIVSKSVIEAEYRAIEDTTSEVIWFLQLL*DCGEDIQILVEI 2538
            G L   GG+L+SW S K K+V+ S  EAEY A      + IW  +L+ +  +       +
Sbjct: 1288 GVLFRYGGSLISWQSQKQKVVALSSCEAEYIAATTAACQGIWLSRLIAELLDAEPGQTTL 1347

Query: 2539 STDNEGAMRLVQNPFFHERTKHIEIQAHFIREKFK*RIIDIKHIKTKEQPTDYFTKALGG 2718
              DN+ A+ L +NP FH+R+KHI+ + HFIRE  + + I ++++ +++Q  D  TK +G 
Sbjct: 1348 MIDNKSAINLCKNPVFHDRSKHIDTRYHFIRECVEKKQIAVEYVCSEDQLADLLTKPVGR 1407

Query: 2719 SKFKKFIRTLKLREISDD 2772
             +FK+  R + L     D
Sbjct: 1408 VRFKELRRKMGLDRTLQD 1425



 Score = 73.9 bits (180), Expect(3) = e-125
 Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
 Frame = +1

Query: 70  WHNRLGHVNSKYLKKLED---ITKNPNLIMPNNKCTHCCISKAHKTPFPQQSSRRAQRPL 240
           WH R GH+N + L++L     +   P +   +  C  C   K  + PFP+++  RAQ  L
Sbjct: 517 WHARFGHLNFQSLRRLAQGNMVRGLPTIDHTDQLCDGCLAGKQRRLPFPEEAKFRAQEAL 576

Query: 241 ELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRKYQ 369
           ELVH D+ GP+       ++YFL+ +DD  +  W+ LL  K++
Sbjct: 577 ELVHGDLCGPITPATPGGRKYFLLLVDDMSRHMWIRLLSGKHE 619



 Score = 73.6 bits (179), Expect(3) = e-125
 Identities = 36/76 (47%), Positives = 51/76 (67%)
 Frame = +3

Query: 384 KMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQQNGVVKRRN 563
           K F+  V+ ++ +KL  LR+D G + T  E +D+C  +G+  ELT PY+PQQN VV+RRN
Sbjct: 625 KQFQAGVELESGRKLRALRTDRGGEFTSVEFMDYCTDRGMRRELTAPYSPQQNRVVERRN 684

Query: 564 KTIVEMMRSMLNHAKL 611
           +T+V   RSML  A L
Sbjct: 685 QTVVAAARSMLKAAGL 700


>emb|CAB75932.1| putative protein [Arabidopsis thaliana]
          Length = 1339

 Score =  358 bits (920), Expect(3) = e-125
 Identities = 220/728 (30%), Positives = 379/728 (52%), Gaps = 13/728 (1%)
 Frame = +1

Query: 625  SYACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHK 804
            S A   +V++ N  P  ++    P + ++   P  ++ R+F    + HIP + R KLD K
Sbjct: 625  SEATKWSVHIQNRSPTAAVEGMTPEEAWSGRKPVVEYFRVFGCIGYVHIPDQKRSKLDDK 684

Query: 805  SEIGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLK-DEINSKTLTKILSMLENK 981
            S+  +FLG    +K + +++P   K +IS+DV+F+EDK+   D+ +          +E K
Sbjct: 685  SKKCVFLGVSEESKAWRLYDPVMKKIVISKDVVFDEDKSWDWDQAD----------VEAK 734

Query: 982  EDIITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQT 1161
            E  +    +   K   V +P     P  N VG   N  V ++ I     P         T
Sbjct: 735  EVTLECGDEDDEKNSEVVEPIAVASP--NHVGSDNN--VSSSPILAPSSPAPSPVAAKVT 790

Query: 1162 QETS-----STQPTRKRTKRMENINNQAYLI--EEEILSFKEAFNNPKWNTTIQKEYEML 1320
            +E       +   T +  +  EN++    ++  E + + F +A  +  W   ++ E E +
Sbjct: 791  RERRPPGWMADYETGEGEEIEENLSVMLLMMMTEADPIQFDDAVKDKIWREAMEHEIESI 850

Query: 1321 VRKDTWELIVLPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAP 1500
            V+ +TWEL  LP     IG KWV   K N +G ++K+KARLVAK + Q  GIDY+E FAP
Sbjct: 851  VKNNTWELTTLPKGFTPIGVKWVYKTKLNEDGEVDKYKARLVAKGYAQCYGIDYTEVFAP 910

Query: 1501 TMKIKTIRTLIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIK--DPNXXXXXX 1674
              ++ T+RT++ ++    WEI  LD+K AFLHGE+ +E+Y++QPEGFI+  +        
Sbjct: 911  VARLDTVRTILAISSQFNWEIFQLDVKSAFLHGELKEEVYVRQPEGFIREGEEEKVYKLR 970

Query: 1675 XXXXXXXXXPRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQ 1854
                     PRAWY ++E + + +   +  ++  LF  +   N  +I + ++DD+  TG 
Sbjct: 971  KALYGLKQAPRAWYSRIEAYFLKEEFERCPSEHTLFTKTRVGN-ILIVSLYVDDLIFTGS 1029

Query: 1855 NTTKIIFFKKELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEK 2034
            +      FKK +   FE++ LG  +++LGI++ +    + +    Y R++L  F  ++  
Sbjct: 1030 DKAMCDEFKKSMMLEFEMSDLGKMKHFLGIEVKQSDGGIFICQRRYAREVLARFGMDESN 1089

Query: 2035 GRKTPLDPGVNLLKN-NEVKANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSEL 2211
              K P+ PG  L K+ N  K +   ++ ++ SL+YLT TR D+ + +C +SRFM  P   
Sbjct: 1090 AVKNPIVPGTKLTKDENGEKVDETMFKQLVGSLMYLTVTRPDLMYGVCLISRFMSNPRMS 1149

Query: 2212 QLKAARNILKYVKETINLGLPF--EKISPLKLQAFCDTNYTDRGSDGKATIGFLVTLGGN 2385
               AA+ IL+Y+K T+ LG+ +   K   LKL AF D++Y    +D ++T GF+  +   
Sbjct: 1150 HWLAAKRILRYLKGTVELGIFYRRRKNRSLKLMAFTDSDYAGDLNDRRSTSGFVFLMASG 1209

Query: 2386 LVSWIS*KLKIVSKSVIEAEYRAIEDTTSEVIWFLQLL*DCGEDIQILVEISTDNEGAMR 2565
             + W S K  +V+ S  EAEY A      + +W  ++L   G + +    I+ DN   ++
Sbjct: 1210 AICWASKKQPVVALSTTEAEYIAAAFCACQCVWLRKVLEKLGAEEKSATVINCDNSSTIQ 1269

Query: 2566 LVQNPFFHERTKHIEIQAHFIREKFK*RIIDIKHIKTKEQPTDYFTKALGGSKFKKFIRT 2745
            L ++P  H ++KHIE++ H++R+     ++ +++  T++Q  D FTK L   +F+K    
Sbjct: 1270 LSKHPVLHGKSKHIEVRFHYLRDLVNGDVVKLEYCPTEDQVADIFTKPLKLEQFEKLRAL 1329

Query: 2746 LKLREISD 2769
            L +  +S+
Sbjct: 1330 LGMVNMSE 1337



 Score = 73.2 bits (178), Expect(3) = e-125
 Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
 Frame = +1

Query: 31  DEVMLCHEENNLIWHNRLGHVNSKYLKKLED---ITKNPNLIMPNNKCTHCCISKAHKTP 201
           +EVM   ++ N +WH R GH+N + LK L     +   P L      C  C   K H+  
Sbjct: 426 EEVM---DKENHLWHCRFGHLNQEGLKLLAHKKMVIGLPILKATKEICAICLTGKQHRES 482

Query: 202 FPQQSSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 363
             +++S ++   L+LVH DI GP+  +    +RY L FIDD+ +  WVY L  K
Sbjct: 483 MSKKTSWKSSTQLQLVHSDICGPITPISHSGKRYILSFIDDFTRKTWVYFLHEK 536



 Score = 69.7 bits (169), Expect(3) = e-125
 Identities = 33/80 (41%), Positives = 51/80 (63%)
 Frame = +3

Query: 378 TFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQQNGVVKR 557
           TFK+F+  V+ +    L+ LR+D G + T  E  +FC   GI  +LT  + PQQNGV +R
Sbjct: 542 TFKIFKASVEKEIGAFLTCLRTDRGGEFTSNEFGEFCRSHGISRQLTAAFTPQQNGVAER 601

Query: 558 RNKTIVEMMRSMLNHAKLIK 617
           +N+TI+  +RSML+  ++ K
Sbjct: 602 KNRTIMNAVRSMLSERQVPK 621


>gb|AAG10812.1|AC018460_6 Putative retroelement polyprotein [Arabidopsis thaliana]
          Length = 1404

 Score =  364 bits (935), Expect(3) = e-125
 Identities = 243/747 (32%), Positives = 370/747 (49%), Gaps = 54/747 (7%)
 Frame = +1

Query: 631  ACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSE 810
            A LTA YL+N  P K +    P ++ N T P  DHLR+F   CF  IP E R KLD KS 
Sbjct: 641  AVLTACYLINRTPTKVLSDLSPFEVLNNTKPFIDHLRVFGCVCFVLIPGEQRSKLDAKST 700

Query: 811  IGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDK---------TLKDEINS-----KT 948
              MFLGY    KGY  ++P + +  ISRDV F E++          LKD  +S     +T
Sbjct: 701  KCMFLGYSTTQKGYKCFDPTKNRTFISRDVKFLENQDYNNKKDWENLKDLTHSTSDRVET 760

Query: 949  LTKILSMLENKEDIITP-EPQPSNKRRVVNQPEEKV-VPTWNTVGEVKNDSVPTNTICLK 1122
            L  +L  L N     T  +P+ +  +  +NQ  E+V +     +  V+ D  P NT    
Sbjct: 761  LKFLLDHLGNDSTSTTQHQPEMTQDQEDLNQENEEVSLQHQENLTHVQED--PPNTQEHS 818

Query: 1123 KKPRWYRDIINQTQETSSTQP--------TRKRTKR-------------------MENIN 1221
            +  +  +D  ++ +E +   P        TR R K+                   +  ++
Sbjct: 819  EHVQEIQDDSSEDEEPTQVLPPPPPLRRSTRIRRKKEFFNSNAVAHPFQATCSLALVPLD 878

Query: 1222 NQAYL--IEEEIL--SFKEAFNNPKWNTTIQKEYEMLVRKDTWELIVLPPERKAIGCKWV 1389
            +QA+L  I E  +  +++EA    +W   I  E   + R  TW+   LP  +K +  +WV
Sbjct: 879  HQAFLSKISEHWIPQTYEEAMEVKEWRDAIADEINAMKRNHTWDEDDLPKGKKTVSSRWV 938

Query: 1390 LSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRTLIILAVHHGWEI*H 1569
             + KY + G +E++K RLVA+ F Q  G DY E FAP  K+ T+R ++ LA +  W +  
Sbjct: 939  FTIKYKSNGDIERYKTRLVARGFTQTYGSDYMETFAPVAKLHTVRVVLALATNLSWGLWQ 998

Query: 1570 LDIKRAFLHGEITKEIYMKQPEGFIKDP---NXXXXXXXXXXXXXXXPRAWYEKLENHLI 1740
            +D+K AFL GE+  ++YM  P G ++D    +               PRAWY KL   L 
Sbjct: 999  MDVKNAFLQGELEDDVYMTPPPG-LEDTIPCDKVLRLRKAIYGLKQSPRAWYHKLSRTLK 1057

Query: 1741 TQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFKKELEDIFEVTGLG 1920
              G  KS +D  LF L   +   V+   ++DD+ +TG N   I   K  L+  F++  LG
Sbjct: 1058 DHGFKKSESDHTLFTLQSPQGI-VVVLIYVDDLIITGDNKDGIDSTKTFLKSCFDIKDLG 1116

Query: 1921 NARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPGVNLLKNNEVK--- 2091
              +Y+LGI++CR    L L    Y   LL        K  +TPL+ G  + +  E +   
Sbjct: 1117 ELKYFLGIEVCRSNAGLFLSQRKYTLDLLNETGFMDAKPARTPLEDGYKVNRKGEKEDEK 1176

Query: 2092 -ANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNILKYVKETINLG 2268
              +A  YR ++  L+YLT TR DI FA+  +S+ M+ P          IL+Y+K +   G
Sbjct: 1177 FGDAPLYRKLVGKLIYLTNTRPDICFAVNQVSQHMKVPMVYHWNMVERILRYLKGSSGQG 1236

Query: 2269 LPFEKISPLKLQAFCDTNYTDRGSDGKATIGFLVTLGGNLVSWIS*KLKIVSKSVIEAEY 2448
            +   K S  ++  +CD +Y     D ++  G+   +GGNL +W + K K+VS S  E+EY
Sbjct: 1237 IWMGKNSSTEIVGYCDADYAGDRGDRRSKTGYCTFIGGNLATWKTKKQKVVSCSSAESEY 1296

Query: 2449 RAIEDTTSEVIWFLQLL*DCGEDIQILVEISTDNEGAMRLVQNPFFHERTKHIEIQAHFI 2628
            RA+   T+E+ W   LL D G +  + + +  DN+ A+ +  N  FHERTKHIE+  H +
Sbjct: 1297 RAMRKLTNELTWLKALLKDLGIEQHMPITMHCDNKAAIYIASNSVFHERTKHIEVDCHKV 1356

Query: 2629 REKFK*RIIDIKHIKTKEQPTDYFTKA 2709
            REK    +    + ++++Q  D FTKA
Sbjct: 1357 REKIIEGVTLPCYTRSEDQLADIFTKA 1383



 Score = 74.7 bits (182), Expect(3) = e-125
 Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
 Frame = +3

Query: 354 PKKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNP 533
           P K  +   F  F   V NQ N K+   R+DNG + T ++  D   ++GII + + PY P
Sbjct: 548 PSKDRVFEAFTNFETYVTNQFNAKIKVFRTDNGGEYTSQKFRDHLAKRGIIHQTSCPYTP 607

Query: 534 QQNGVVKRRNKTIVEMMRSMLNHAKLIKG-WELCMSYSCILI 656
           QQNGV +R+N+ ++E+ RSM+ H  + K  W   +  +C LI
Sbjct: 608 QQNGVAERKNRHLMEVARSMMFHTSVPKRFWGDAVLTACYLI 649



 Score = 60.8 bits (146), Expect(3) = e-125
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
 Frame = +1

Query: 1   GNIYVLEKLRDEVMLCHEEN-------NLIWHNRLGHVNSKYLKKLEDITKNPNLIMPNN 159
           G +YVLE L      C           N +WH RLGH +++ LK +      PN+   + 
Sbjct: 430 GELYVLEDLSPNSSSCFSSKSHLGISFNTLWHARLGHPHTRALKLM-----LPNISFDHT 484

Query: 160 KCTHCCISKAHKTPFPQQSSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMN 339
            C  C + K  K+ FP +S    ++  +LVH D++     + +   +YF+ FI++  K  
Sbjct: 485 SCEACILGKHCKSVFP-KSLTIYEKCFDLVHSDVW-TSPCVSRDNNKYFVTFINEKSKYT 542

Query: 340 WVYLLQRK 363
           W+ LL  K
Sbjct: 543 WITLLPSK 550


>emb|CAE03692.2| OSJNBb0026E15.10 [Oryza sativa Japonica Group]
          Length = 1449

 Score =  349 bits (895), Expect(3) = e-123
 Identities = 226/722 (31%), Positives = 372/722 (51%), Gaps = 21/722 (2%)
 Frame = +1

Query: 631  ACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSE 810
            A  TAV+LLN  P KS+  + P + +    P+   LR F       I K   KKLD +S 
Sbjct: 719  AMSTAVFLLNRSPTKSLDNQTPYEAWYGQWPAVHFLRTFGCVGHVKITKPGLKKLDDRSA 778

Query: 811  IGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLK---------DEINSKTLTKIL 963
              + LGY   +K Y +++P   +  +SRDV+F+ED              ++   T+ +++
Sbjct: 779  PMVLLGYEQGSKAYRLYDPVSERVHVSRDVVFDEDIAWDWGPVTPDGAPQLEPFTVEQVV 838

Query: 964  SMLENKEDIITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKK----- 1128
            +         +P P PS      + P     P+  +   V+  + PT    L        
Sbjct: 839  TTTIGTAPASSPTP-PSPPSPAPSAPTTPAPPSPPSPEAVEFVTPPTQDSILDADADDDV 897

Query: 1129 -PRWYRDIINQTQETSSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQK 1305
             PR YR + N     S   P     + +E +       +E   S  EA  +P W   +Q 
Sbjct: 898  VPR-YRLVDNLLGNAS---PPGHAPRVLEQLELHVVSADEPA-SLAEAEADPSWRGAMQD 952

Query: 1306 EYEMLVRKDTWELIVLPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYS 1485
            E   +V  DTW L  LP   +AIG KWV   K + +G + ++KARLVAK + Q+ G+D+ 
Sbjct: 953  ELNAIVDNDTWSLTDLPHGHRAIGLKWVYKLKRDEQGAIVRYKARLVAKGYVQRQGVDFD 1012

Query: 1486 EKFAPTMKIKTIRTLIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIKD--PNX 1659
            E FA   +++++R L+ +A H GW++ H+D+K AFL+GE+ +E+Y+ QP GF+ D   N 
Sbjct: 1013 EVFALVARLESVRLLLAVAAHQGWQVHHMDVKSAFLNGELLEEVYVSQPPGFVDDNHKNK 1072

Query: 1660 XXXXXXXXXXXXXXPRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDI 1839
                          PRAW  KL++ L++ G  +S ++  + Y      R ++   ++DD+
Sbjct: 1073 VYRLHKALYGLRQAPRAWNAKLDSSLLSLGFHRSSSEHGV-YTRTRGGRRLMVGVYVDDL 1131

Query: 1840 FLTGQNTTKIIFFKKELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQ 2019
             +TG +  +I  FK E+  +F+++ LG  RYYLGI++ +  + + L   AY  K+L    
Sbjct: 1132 IITGDHDDEIRSFKGEMMKLFKMSDLGALRYYLGIEVTQDSDGITLGQAAYAGKILEKAG 1191

Query: 2020 EEKEKGRKTPLDPGVNLLKNNEVK-ANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQ 2196
             +     +TP++  + L K ++    +A  YRS++ SL YL  TR D+ F++ Y+SRFM+
Sbjct: 1192 LKDCNPCQTPMEVRLKLRKGSDFPLVDATLYRSLVGSLRYLVNTRPDLAFSVGYVSRFME 1251

Query: 2197 EPSELQLKAARNILKYVKETINLGL---PFEKISPLKLQAFCDTNYTDRGSDGKATIGFL 2367
             P E  L A R IL+YV  T   G+   P  + +   L  + D++      + K+T G +
Sbjct: 1252 SPREDHLAAVRRILRYVAGTRCWGIRFGPGARCALPMLVGYSDSDLAGDPDERKSTSGQI 1311

Query: 2368 VTLGGNLVSWIS*KLKIVSKSVIEAEYRAIEDTTSEVIWFLQLL*DCGEDIQILVEISTD 2547
              + G  V+W S K K+V+ S  EAEY A    T + +W  +LL +   D      +  D
Sbjct: 1312 FFINGGPVTWQSSKQKVVALSSCEAEYIAAAAATCQGVWLARLLAEVLGDEITAPLLKVD 1371

Query: 2548 NEGAMRLVQNPFFHERTKHIEIQAHFIREKFK*RIIDIKHIKTKEQPTDYFTKALGGSKF 2727
            N+  + L++NP  H+R+KHI+++ H+IRE  + ++I++  + T EQ  D FTK+LG ++F
Sbjct: 1372 NQSTISLIKNPVHHDRSKHIDVKYHYIRECAEKKLIEMMFVGTAEQLGDIFTKSLGRTRF 1431

Query: 2728 KK 2733
            ++
Sbjct: 1432 QE 1433



 Score = 73.2 bits (178), Expect(3) = e-123
 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
 Frame = +1

Query: 70  WHNRLGHVNSKYLKKL---EDITKNPNLIMPNNKCTHCCISKAHKTPFPQQSSRRAQRPL 240
           WH R GH+N   L+KL   E +   P L      C  C + K  +  FP QS  RA   L
Sbjct: 528 WHARYGHLNFPALRKLAQQEMVRGLPLLQQVTQVCDGCLLGKQRRAAFPTQSKYRADEHL 587

Query: 241 ELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 363
           ELVH D+ GP+E       RYFL+ +DD  +  W+ +++ K
Sbjct: 588 ELVHGDLCGPIEPATPAGNRYFLLLVDDMSRYMWLTMIRSK 628



 Score = 72.4 bits (176), Expect(3) = e-123
 Identities = 40/96 (41%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
 Frame = +3

Query: 375 NTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQQNGVVK 554
           N  K F+ + + ++ +KL  LR D G++ T  E  ++C   G+  +LT PY+PQQNGVV+
Sbjct: 633 NAIKHFQARAEVESGRKLRALRMDRGSEFTSIEFGEYCANLGVGRQLTAPYSPQQNGVVE 692

Query: 555 RRNKTIVEMMRSMLNHAKLIKG--WELCMSYSCILI 656
           RRN+TIV   RSM+  AK + G  W   MS +  L+
Sbjct: 693 RRNQTIVATARSMMK-AKGVPGRFWGEAMSTAVFLL 727


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  340 bits (871), Expect(3) = e-123
 Identities = 221/718 (30%), Positives = 355/718 (49%), Gaps = 19/718 (2%)
 Frame = +1

Query: 631  ACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSE 810
            A  TA Y++N  P+ +IG K P++++      +  LR+F    +     + R KLD KS 
Sbjct: 613  AAKTACYVINRSPSTAIGLKTPMEMWKGKPGDYSSLRVFGCPVYVMYNSQERTKLDPKSR 672

Query: 811  IGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSM-LENKED 987
               FLGY  N KGY +W+P   K  +SRDVIF E++  K++ N  T  +  ++ +E K  
Sbjct: 673  RCTFLGYADNVKGYRLWDPTARKIFVSRDVIFVENELQKEQKNDGTTKETATVEIEEKSG 732

Query: 988  IITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQE 1167
                E +P ++ +  N+                ND+ P  T    +KP W+ + +  + +
Sbjct: 733  EENSEAEPEHEEQEPNEV---------------NDAEPRRTTRQIRKPSWHSEYVMASHD 777

Query: 1168 TSSTQPTRKRTKRMENINNQAYLI---EEEILSFKEAFNNPK---WNTTIQKEYEMLVRK 1329
                                AY +   + E  +F EA N      W   +Q+E E L R 
Sbjct: 778  --------------------AYCLLSEDGEPSTFHEAVNGSDASLWMAAMQEEIEALHRN 817

Query: 1330 DTWELIVLPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMK 1509
            +TWEL+ LP  RKAIG KWV   K +    +E+++ARLV K + QK GID++E F+P ++
Sbjct: 818  NTWELVELPKGRKAIGNKWVFKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVR 877

Query: 1510 IKTIRTLIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIKD--PNXXXXXXXXX 1683
            + TIR ++ +       +  LD+K AFLHGE+ +EIYM QPEGF +    N         
Sbjct: 878  LTTIRIVLAMCAAFELHLEQLDVKTAFLHGELEEEIYMLQPEGFEEKERENLVCRLTKSL 937

Query: 1684 XXXXXXPRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTT 1863
                  PR WY++ ++ +++ G  +  +D   +Y   +    +I   ++DD+ + G N  
Sbjct: 938  YGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCTYYKRFDDGDFIILLLYVDDMLVVGPNKD 997

Query: 1864 KIIFFKKELEDIFEVTGLGNARYYLGIQI--CR*GESLILH*EAYIRKLLVSFQEEKEKG 2037
            ++   K +L   F++  LG A   LG+QI   R    + L  + Y++K+L  F  +    
Sbjct: 998  RVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLQKVLRRFNMQDYNP 1057

Query: 2038 RKTPLDPGVNLLKN-------NEVKANAVTYRSIIRSLLY-LTYTRSDIHFAICYLSRFM 2193
              TPL     L  +         ++ + V Y S + SL+Y +  TR DI  A+  +SRFM
Sbjct: 1058 ISTPLPVNYKLSSSMIPSSEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGTVSRFM 1117

Query: 2194 QEPSELQLKAARNILKYVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKATIGFLVT 2373
             +P +    A + IL+Y++ T    L F   S   ++ + D+++       K+T G++ T
Sbjct: 1118 ADPGKEHWNAVKRILRYIRGTSGAALCFGG-SEFTIRGYVDSDFAGDLDKRKSTTGYVFT 1176

Query: 2374 LGGNLVSWIS*KLKIVSKSVIEAEYRAIEDTTSEVIWFLQLL*DCGEDIQILVEISTDNE 2553
            L G  VSW+S    +V+ S  EAEY A      E IW  +LL + G   Q  + +  D+ 
Sbjct: 1177 LAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWTQRLLEELGHK-QQKITVYCDSP 1235

Query: 2554 GAMRLVQNPFFHERTKHIEIQAHFIREKFK*RIIDIKHIKTKEQPTDYFTKALGGSKF 2727
             A+ + +NP FH RTKHI +Q HF+RE  +   ++++ I TK+   D  TK +   KF
Sbjct: 1236 SALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVNMQKIHTKDNLADVMTKPINSDKF 1293



 Score = 79.7 bits (195), Expect(3) = e-123
 Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
 Frame = +3

Query: 348 PTPKKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPY 527
           P  KK  + + FK F+ QV+ +T +++  LR+DNG + T  + + FC Q+GI  + T+ +
Sbjct: 518 PIKKKSGVYSVFKEFKAQVELETGKRIKCLRTDNGGEYTDGDFLAFCKQEGITRQFTVAH 577

Query: 528 NPQQNGVVKRRNKTIVEMMRSMLNHAKLIKG-WELCMSYSCILI 656
            PQQNGV +R N+T++E  R+ML  A L K  W      +C +I
Sbjct: 578 TPQQNGVAERMNRTLLERTRAMLKTAGLAKSFWAEAAKTACYVI 621



 Score = 74.7 bits (182), Expect(3) = e-123
 Identities = 40/105 (38%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
 Frame = +1

Query: 52  EENNLIWHNRLGHVNSKYLKKLEDITKNPNLIMPNNK-CTHCCISKAHKTPFPQQSSRRA 228
           EE  ++WH RLGH++ + LK L +    P L   +   C HC ISK H+  F  +S+ R+
Sbjct: 420 EETTMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISKQHRLKF-AKSTARS 478

Query: 229 QRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 363
           +  L+L+H D++   E+ I    +YF+ FIDDY +  WVY +++K
Sbjct: 479 KHILDLIHSDVWESPEVSI-GGAKYFVSFIDDYSRRLWVYPIKKK 522


>emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]
          Length = 1430

 Score =  337 bits (864), Expect(3) = e-123
 Identities = 212/703 (30%), Positives = 352/703 (50%), Gaps = 4/703 (0%)
 Frame = +1

Query: 640  TAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSEIGM 819
            TAVYLLN  P K++  + P + +    P   HL++F S  +       R KLD KS   +
Sbjct: 744  TAVYLLNISPTKAVLNRTPYEAWYGRKPWVSHLKVFGSVAYTLXBSHNRSKLDEKSVKCI 803

Query: 820  FLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSK-TLTKILSMLENKEDIIT 996
            F+GY   +KGY ++NP   K I+SR+V+F+E  +    ++    L +I S  E  +   +
Sbjct: 804  FIGYCSQSKGYKLYNPVSGKIIVSRNVVFDEKASXTWRVSEDGALVEISSESEMAQ---S 860

Query: 997  PEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQETSS 1176
             + QPS   ++   P     P+   +    +      T    +K R  RDI   TQ    
Sbjct: 861  EDQQPS--VQIPXSPTPSHSPSSPNLSXSSSSQSSEET--PPRKFRSLRDIYETTQVLFV 916

Query: 1177 TQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELIVLP 1356
              PT                      +F+EA    +W + +++E   + + +TWEL+ LP
Sbjct: 917  ADPT----------------------TFEEAVEKEEWCSAMKEEIAAIEKNETWELVELP 954

Query: 1357 PERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRTLII 1536
             ++  IG KWV   KY A+G ++K KARLVAK + Q+ G+DY + F+P  + +T+RTL+ 
Sbjct: 955  EDKNVIGVKWVFRTKYLADGSIQKHKARLVAKGYAQQHGVDYDDTFSPVARFETVRTLLA 1014

Query: 1537 LAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFI--KDPNXXXXXXXXXXXXXXXPRA 1710
            LA H  W +   D+K AFL+GE+ +E+Y  QPEGFI                     PRA
Sbjct: 1015 LAAHMHWCVYQFDVKSAFLNGELVEEVYXSQPEGFIVPDKEEHVYRLKXALYGLKQAPRA 1074

Query: 1711 WYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFKKEL 1890
            WY K++++ +  G  KS ++ NL+   + KN  +I   ++DD+   G +++ I  FK  +
Sbjct: 1075 WYSKIDSYFVENGFEKSKSEPNLYLKRQGKNDLLIICLYVDDMIYMGSSSSLINEFKACM 1134

Query: 1891 EDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPGVNL 2070
            +  FE++ LG   ++LG+++ +  + + +    Y   LL  F     K    P++    L
Sbjct: 1135 KKKFEMSDLGLLHFFLGLEVKQVEDGVFVSQRKYAVDLLKKFNMLNCKVVAIPMNSNEKL 1194

Query: 2071 -LKNNEVKANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNILKYV 2247
              ++   +A+A  +RS++  L+YLT+TR DI FA+  +SRFM  PS+  L A + +L+Y+
Sbjct: 1195 QAEDGTERADARRFRSLVGGLIYLTHTRPDIAFAVGVISRFMHCPSKQHLGATKRLLRYI 1254

Query: 2248 KETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKATIGFLVTLGGNLVSWIS*KLKIVSK 2427
              T +  +    +   KL  + D+++     D K+T G++ +LG                
Sbjct: 1255 AGTYDFRIWXGHVQEFKLVGYTDSDWAGCLEDRKSTSGYMFSLG---------------- 1298

Query: 2428 SVIEAEYRAIEDTTSEVIWFLQLL*DCGEDIQILVEISTDNEGAMRLVQNPFFHERTKHI 2607
                AEY     +  + +W  ++L D  ++ +    I  DN+ A+ + +NP +H RTKH+
Sbjct: 1299 ---SAEYTVATSSACQAVWLRRILADINQEHEEPTVIYCDNKAAIAMTKNPAYHGRTKHV 1355

Query: 2608 EIQAHFIREKFK*RIIDIKHIKTKEQPTDYFTKALGGSKFKKF 2736
            +I+ HFIR+      + +++  T EQ  D  TKAL   K   F
Sbjct: 1356 DIRVHFIRDLVVEGKVVLQYCNTNEQVADVLTKALSRDKHVYF 1398



 Score = 86.7 bits (213), Expect(3) = e-123
 Identities = 49/106 (46%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
 Frame = +1

Query: 55  ENNLIWHNRLGHVNSKYLK---KLEDITKNPNLIMPNNKCTHCCISKAHKTPFPQQSSRR 225
           E+NL WH R GH+N K LK   K E + + P  I   N C  C   K  K PFP+  SRR
Sbjct: 547 ESNL-WHLRYGHLNVKGLKLLSKKEMVFELPK-IDSVNVCEGCIYGKQSKKPFPKGRSRR 604

Query: 226 AQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 363
           A   LE++H D+ GPM+       RYFL+F DD+ +M+WVY LQ K
Sbjct: 605 ASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSK 650



 Score = 70.1 bits (170), Expect(3) = e-123
 Identities = 32/79 (40%), Positives = 50/79 (63%)
 Frame = +3

Query: 360 KIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQQ 539
           K     TFK F+  V+ Q+ + +  LR+D   +    +   FC ++G+  ELT PY+P+Q
Sbjct: 650 KAETFETFKKFKAFVEKQSGKCIKVLRTDRXGEFLSNDFKVFCEEEGLHRELTTPYSPEQ 709

Query: 540 NGVVKRRNKTIVEMMRSML 596
           NGV +R+N+T+VEM RSM+
Sbjct: 710 NGVAERKNRTVVEMARSMM 728



 Score = 71.6 bits (174), Expect = 2e-09
 Identities = 39/144 (27%), Positives = 69/144 (47%)
 Frame = +1

Query: 2203 SELQLKAARNILKYVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKATIGFLVTLGG 2382
            S+  L AA  +L+Y+  T +  + +  +   KL  + D+++                   
Sbjct: 5    SKQHLGAAXRLLRYIAGTYDFRIWYGHVQEFKLVGYTDSDWA------------------ 46

Query: 2383 NLVSWIS*KLKIVSKSVIEAEYRAIEDTTSEVIWFLQLL*DCGEDIQILVEISTDNEGAM 2562
              V W S K  +   S  EAEY A   +  + +W  ++L D  ++ +    I  DN+ A+
Sbjct: 47   GXVCWXSKKQAVTXLSSSEAEYTAXTSSACQAVWLRRILXDINQEHEEXTVIYCDNKAAI 106

Query: 2563 RLVQNPFFHERTKHIEIQAHFIRE 2634
             + +NP +H RTKH++I+ HFIR+
Sbjct: 107  AMTKNPAYHGRTKHVDIRVHFIRD 130