BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00015932
         (591 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   394   e-107
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   392   e-107
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   392   e-107
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   392   e-107
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   392   e-107
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   392   e-107
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   392   e-107
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   389   e-106
gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 387   e-106
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   387   e-106
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   357   2e-96
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             277   2e-72
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   272   5e-71
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   258   1e-66
gb|AFM77886.1| replicase [Hosta virus X]                              257   1e-66
ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CA...   257   1e-66
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   248   8e-64
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 248   1e-63
gb|ACS28228.1| replicase [Alternanthera mosaic virus]                 248   1e-63
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   247   2e-63

>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  394 bits (1011), Expect = e-107
 Identities = 192/196 (97%), Positives = 196/196 (100%)
 Frame = -3

Query: 589  KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLT 410
            KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLT
Sbjct: 1164 KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLT 1223

Query: 409  GEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAK 230
            GEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAK
Sbjct: 1224 GEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAK 1283

Query: 229  PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLD 50
            PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGV+DAI+NV+ANYSLD
Sbjct: 1284 PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVRDAITNVVANYSLD 1343

Query: 49   AKLAYSLGDDLQDLLS 2
            AKLAYSLGDDLQDLLS
Sbjct: 1344 AKLAYSLGDDLQDLLS 1359


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  392 bits (1008), Expect = e-107
 Identities = 191/196 (97%), Positives = 196/196 (100%)
 Frame = -3

Query: 589  KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLT 410
            KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+IMRLT
Sbjct: 1159 KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLT 1218

Query: 409  GEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAK 230
            GEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAK
Sbjct: 1219 GEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAK 1278

Query: 229  PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLD 50
            PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLD
Sbjct: 1279 PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLD 1338

Query: 49   AKLAYSLGDDLQDLLS 2
            AKLAYSLGDDLQDLLS
Sbjct: 1339 AKLAYSLGDDLQDLLS 1354


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  392 bits (1006), Expect = e-107
 Identities = 190/196 (96%), Positives = 196/196 (100%)
 Frame = -3

Query: 589  KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLT 410
            KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLT
Sbjct: 1159 KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLT 1218

Query: 409  GEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAK 230
            GEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAK
Sbjct: 1219 GEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAK 1278

Query: 229  PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLD 50
            PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLD
Sbjct: 1279 PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLD 1338

Query: 49   AKLAYSLGDDLQDLLS 2
            AKLAYSLGDDLQDLLS
Sbjct: 1339 AKLAYSLGDDLQDLLS 1354


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  392 bits (1006), Expect = e-107
 Identities = 190/196 (96%), Positives = 196/196 (100%)
 Frame = -3

Query: 589  KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLT 410
            KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLT
Sbjct: 1159 KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLT 1218

Query: 409  GEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAK 230
            GEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAK
Sbjct: 1219 GEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAK 1278

Query: 229  PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLD 50
            PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLD
Sbjct: 1279 PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLD 1338

Query: 49   AKLAYSLGDDLQDLLS 2
            AKLAYSLGDDLQDLLS
Sbjct: 1339 AKLAYSLGDDLQDLLS 1354


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  392 bits (1006), Expect = e-107
 Identities = 190/196 (96%), Positives = 196/196 (100%)
 Frame = -3

Query: 589  KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLT 410
            KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLT
Sbjct: 1159 KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLT 1218

Query: 409  GEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAK 230
            GEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAK
Sbjct: 1219 GEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAK 1278

Query: 229  PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLD 50
            PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLD
Sbjct: 1279 PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLD 1338

Query: 49   AKLAYSLGDDLQDLLS 2
            AKLAYSLGDDLQDLLS
Sbjct: 1339 AKLAYSLGDDLQDLLS 1354


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  392 bits (1006), Expect = e-107
 Identities = 190/196 (96%), Positives = 196/196 (100%)
 Frame = -3

Query: 589  KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLT 410
            KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLT
Sbjct: 1159 KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLT 1218

Query: 409  GEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAK 230
            GEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAK
Sbjct: 1219 GEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAK 1278

Query: 229  PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLD 50
            PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLD
Sbjct: 1279 PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLD 1338

Query: 49   AKLAYSLGDDLQDLLS 2
            AKLAYSLGDDLQDLLS
Sbjct: 1339 AKLAYSLGDDLQDLLS 1354


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  392 bits (1006), Expect = e-107
 Identities = 190/196 (96%), Positives = 196/196 (100%)
 Frame = -3

Query: 589  KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLT 410
            KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLT
Sbjct: 1159 KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLT 1218

Query: 409  GEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAK 230
            GEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAK
Sbjct: 1219 GEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAK 1278

Query: 229  PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLD 50
            PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLD
Sbjct: 1279 PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLD 1338

Query: 49   AKLAYSLGDDLQDLLS 2
            AKLAYSLGDDLQDLLS
Sbjct: 1339 AKLAYSLGDDLQDLLS 1354


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 711

 Score =  389 bits (1000), Expect = e-106
 Identities = 189/196 (96%), Positives = 195/196 (99%)
 Frame = -3

Query: 589  KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLT 410
            KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+IMRLT
Sbjct: 490  KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLT 549

Query: 409  GEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAK 230
            GEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDDCAI+QVCPEKPSF+LLKNRIALQAK
Sbjct: 550  GEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDDCAISQVCPEKPSFSLLKNRIALQAK 609

Query: 229  PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLD 50
            PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLD
Sbjct: 610  PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLD 669

Query: 49   AKLAYSLGDDLQDLLS 2
            AKLAYSLGDDLQDLLS
Sbjct: 670  AKLAYSLGDDLQDLLS 685


>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  387 bits (995), Expect = e-106
 Identities = 189/196 (96%), Positives = 194/196 (98%)
 Frame = -3

Query: 589  KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLT 410
            KP+YANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLT
Sbjct: 1147 KPAYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLT 1206

Query: 409  GEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAK 230
            GEGPTFDANTECNIAYTHTRF IPEGTAQIYAGDDCAIAQVCPEKPSFALLK+RIALQAK
Sbjct: 1207 GEGPTFDANTECNIAYTHTRFNIPEGTAQIYAGDDCAIAQVCPEKPSFALLKDRIALQAK 1266

Query: 229  PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLD 50
            PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLD
Sbjct: 1267 PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLD 1326

Query: 49   AKLAYSLGDDLQDLLS 2
            AKLAYSLGD+L DLLS
Sbjct: 1327 AKLAYSLGDELHDLLS 1342


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  387 bits (995), Expect = e-106
 Identities = 188/196 (95%), Positives = 194/196 (98%)
 Frame = -3

Query: 589  KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLT 410
            KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLT
Sbjct: 1159 KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLT 1218

Query: 409  GEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAK 230
            GEGP FDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAK
Sbjct: 1219 GEGPAFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAK 1278

Query: 229  PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLD 50
            PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ NYSLD
Sbjct: 1279 PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVDNYSLD 1338

Query: 49   AKLAYSLGDDLQDLLS 2
            AKLAYSLGDDLQDLLS
Sbjct: 1339 AKLAYSLGDDLQDLLS 1354


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  357 bits (915), Expect = 2e-96
 Identities = 172/196 (87%), Positives = 184/196 (93%)
 Frame = -3

Query: 589  KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLT 410
            KP YANDFTAFDQSQDGAMLQFEILKAK+FNLPEWVIEGYLDIKL+P+IF GTL+IMRLT
Sbjct: 1140 KPXYANDFTAFDQSQDGAMLQFEILKAKFFNLPEWVIEGYLDIKLTPQIFTGTLAIMRLT 1199

Query: 409  GEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAK 230
            GEGPTFDANTECNIAYTHTRF IP+  AQ+YAGDDCAIA+VC EKPSFALLKNRIALQAK
Sbjct: 1200 GEGPTFDANTECNIAYTHTRFHIPDHVAQLYAGDDCAIAEVCQEKPSFALLKNRIALQAK 1259

Query: 229  PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLD 50
            PAY PQ RG WAEFCGYLITPKGLIKDPLKLH+SLELAKA +K G KDAI+NV+ANYSLD
Sbjct: 1260 PAYAPQTRGAWAEFCGYLITPKGLIKDPLKLHSSLELAKALRKQGRKDAITNVVANYSLD 1319

Query: 49   AKLAYSLGDDLQDLLS 2
            AK+AYSLGDDLQDLLS
Sbjct: 1320 AKMAYSLGDDLQDLLS 1335


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  277 bits (708), Expect = 2e-72
 Identities = 138/194 (71%), Positives = 156/194 (80%)
 Frame = -3

Query: 583  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 404
            SYANDFTAFDQSQDGAMLQFEILKAK+FN+PE +I+GYLDIKL+ KIFLG L IMRLTGE
Sbjct: 1168 SYANDFTAFDQSQDGAMLQFEILKAKHFNIPEEIIQGYLDIKLNAKIFLGVLGIMRLTGE 1227

Query: 403  GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 224
            GPTFDANTECNIAYTHTRF+IP GTAQ+YAGDD AIA V PE+PSF L+   +AL+AKP 
Sbjct: 1228 GPTFDANTECNIAYTHTRFDIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPV 1287

Query: 223  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 44
            Y PQ  G WAEFCGYLITPKGLIKDP KL ASL+L +A   +G K  +     NY  D  
Sbjct: 1288 YAPQVAGAWAEFCGYLITPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVG 1345

Query: 43   LAYSLGDDLQDLLS 2
            LAY+L D L ++LS
Sbjct: 1346 LAYALKDSLYEILS 1359


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  272 bits (695), Expect = 5e-71
 Identities = 136/194 (70%), Positives = 154/194 (79%)
 Frame = -3

Query: 583  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 404
            SYANDFTAFDQSQD AMLQFEILKAK+FN+P  +I+GYLDIKL+ KIFLG L IMRLTGE
Sbjct: 1168 SYANDFTAFDQSQDAAMLQFEILKAKHFNIPGEIIQGYLDIKLNAKIFLGVLGIMRLTGE 1227

Query: 403  GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 224
            GPTFDANTECNIAYTHTRF+IP GTAQ+YAGDD AIA V PE+PSF L+   +AL+AKP 
Sbjct: 1228 GPTFDANTECNIAYTHTRFDIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPV 1287

Query: 223  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 44
            Y PQ  G WAEFCGYLITPKGLIKDP KL ASL+L +A   +G K  +     NY  D  
Sbjct: 1288 YAPQVAGAWAEFCGYLITPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVG 1345

Query: 43   LAYSLGDDLQDLLS 2
            LAY+L D L ++LS
Sbjct: 1346 LAYALKDSLYEILS 1359


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  258 bits (658), Expect = 1e-66
 Identities = 134/201 (66%), Positives = 153/201 (76%), Gaps = 5/201 (2%)
 Frame = -3

Query: 589  KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLT 410
            KPSYANDFTAFDQSQDGAMLQFEILKAK+ N+PEWV+EGYLDIKL  +IFLGTLSIMRLT
Sbjct: 1233 KPSYANDFTAFDQSQDGAMLQFEILKAKHHNIPEWVLEGYLDIKLDSRIFLGTLSIMRLT 1292

Query: 409  GEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQ-- 236
            GE  TFDANTECNIAYTHTRF+IPEG AQ     D A+   C EKPSF L+++ ++L+  
Sbjct: 1293 GEYQTFDANTECNIAYTHTRFDIPEGVAQ-----DSAMDATCLEKPSFKLIESELSLKLY 1347

Query: 235  ---AKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIA 65
                KP    Q  G+WAEFCGYLITPKGLIKDPLKL AS  LAK + K      + N + 
Sbjct: 1348 AGDCKPCLKAQIPGEWAEFCGYLITPKGLIKDPLKLAASFRLAKERGKR----ELDNCLE 1403

Query: 64   NYSLDAKLAYSLGDDLQDLLS 2
            NY+ D KLAY LGDDL +LL+
Sbjct: 1404 NYARDMKLAYDLGDDLLELLT 1424


>gb|AFM77886.1| replicase [Hosta virus X]
          Length = 1473

 Score =  257 bits (657), Expect = 1e-66
 Identities = 127/194 (65%), Positives = 152/194 (78%)
 Frame = -3

Query: 583  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 404
            +YANDFTAFDQSQDGAMLQFEI+KAK+ N+PE +I GY+DIK + KIFLGTL+IMRLTGE
Sbjct: 1241 AYANDFTAFDQSQDGAMLQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGE 1300

Query: 403  GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 224
            GPTFDANTECNIAYTH RF +PE  AQ+YAGDD A+++VCPEK SF    +R+ L++KP 
Sbjct: 1301 GPTFDANTECNIAYTHLRFNVPENVAQVYAGDDSALSKVCPEKDSFKQFADRLTLKSKPQ 1360

Query: 223  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 44
              PQ +G WAEFCG LITP+G+IKDP+KLHAS  LA    K G    I   + +Y  D K
Sbjct: 1361 VFPQTQGAWAEFCGLLITPRGIIKDPVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLK 1416

Query: 43   LAYSLGDDLQDLLS 2
            L+Y LGD LQ+LLS
Sbjct: 1417 LSYDLGDHLQELLS 1430


>ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CAF04078.1| replicase
            [Hosta virus X]
          Length = 1507

 Score =  257 bits (657), Expect = 1e-66
 Identities = 127/194 (65%), Positives = 152/194 (78%)
 Frame = -3

Query: 583  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 404
            +YANDFTAFDQSQDGAMLQFEI+KAK+ N+PE +I GY+DIK + KIFLGTL+IMRLTGE
Sbjct: 1275 AYANDFTAFDQSQDGAMLQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGE 1334

Query: 403  GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 224
            GPTFDANTECNIAYTH RF +PE  AQ+YAGDD A+++VCPEK SF    +R+ L++KP 
Sbjct: 1335 GPTFDANTECNIAYTHLRFNVPENVAQVYAGDDSALSKVCPEKDSFKQFADRLTLKSKPQ 1394

Query: 223  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 44
              PQ +G WAEFCG LITP+G+IKDP+KLHAS  LA    K G    I   + +Y  D K
Sbjct: 1395 VFPQTQGAWAEFCGLLITPRGIIKDPVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLK 1450

Query: 43   LAYSLGDDLQDLLS 2
            L+Y LGD LQ+LLS
Sbjct: 1451 LSYDLGDHLQELLS 1464


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
            [Allium virus X]
          Length = 1701

 Score =  248 bits (633), Expect = 8e-64
 Identities = 122/194 (62%), Positives = 152/194 (78%)
 Frame = -3

Query: 583  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 404
            +YANDFT FDQSQDGAMLQFEILKAK+ ++PEWV+EGYLDIK + K+F G LSIMRLTGE
Sbjct: 1489 AYANDFTQFDQSQDGAMLQFEILKAKHHSIPEWVLEGYLDIKTNAKVFSGVLSIMRLTGE 1548

Query: 403  GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 224
            GPTFDANTECNIAYTH RF++P+GTAQ+YAGDD A++ + PE+PSFA  K ++ L +KPA
Sbjct: 1549 GPTFDANTECNIAYTHLRFDVPKGTAQLYAGDDSALSCLPPERPSFADFKQQLTLTSKPA 1608

Query: 223  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 44
               Q+RG WAEFCGYLITP G++KDP KL A++ LA+ Q K      +     +++LD K
Sbjct: 1609 LFAQKRGFWAEFCGYLITPLGIMKDPAKLAATVVLAQKQNK------LHECWRSHALDLK 1662

Query: 43   LAYSLGDDLQDLLS 2
            LAY   D L ++LS
Sbjct: 1663 LAYVHRDALTEVLS 1676


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  248 bits (632), Expect = 1e-63
 Identities = 125/195 (64%), Positives = 152/195 (77%)
 Frame = -3

Query: 586  PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTG 407
            PS ANDFTAFDQSQDGAMLQFE+LKAK+ ++PE V++ YL IK + KIFLGTL+IMRLTG
Sbjct: 1319 PSLANDFTAFDQSQDGAMLQFEVLKAKHHSIPEDVLDAYLHIKTNSKIFLGTLTIMRLTG 1378

Query: 406  EGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKP 227
            EGPTFDANTECNIA+TH +F+IP+GTAQ+YAGDD AI    P + SF L++ ++ L++KP
Sbjct: 1379 EGPTFDANTECNIAFTHAKFQIPKGTAQLYAGDDSAIDGNPPVRESFRLVEQKLKLRSKP 1438

Query: 226  AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 47
            A   QE+G WAEFCGY ITPKG IKDP KLHASL L   +KK G    + NV+ +Y LD 
Sbjct: 1439 AIAMQEKGDWAEFCGYRITPKGFIKDPKKLHASLVL---EKKRG---NLKNVLRSYELDL 1492

Query: 46   KLAYSLGDDLQDLLS 2
             LAY   D+L +LLS
Sbjct: 1493 ALAYQHRDELHELLS 1507


>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  248 bits (632), Expect = 1e-63
 Identities = 125/195 (64%), Positives = 152/195 (77%)
 Frame = -3

Query: 586  PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTG 407
            PS ANDFTAFDQSQDGAMLQFE+LKAK+ ++PE V++ YL IK + KIFLGTL+IMRLTG
Sbjct: 1319 PSLANDFTAFDQSQDGAMLQFEVLKAKHHSIPEDVLDAYLHIKTNSKIFLGTLTIMRLTG 1378

Query: 406  EGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKP 227
            EGPTFDANTECNIA+TH +F+IP+GTAQ+YAGDD AI    P + SF L++ ++ L++KP
Sbjct: 1379 EGPTFDANTECNIAFTHAKFQIPKGTAQLYAGDDSAIDGNPPVRESFRLVEQKLKLRSKP 1438

Query: 226  AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 47
            A   QE+G WAEFCGY ITPKG IKDP KLHASL L   +KK G    + NV+ +Y LD 
Sbjct: 1439 AIAMQEKGDWAEFCGYRITPKGFIKDPKKLHASLVL---EKKRG---NLKNVLRSYELDL 1492

Query: 46   KLAYSLGDDLQDLLS 2
             LAY   D+L +LLS
Sbjct: 1493 ALAYQHRDELHELLS 1507


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  247 bits (630), Expect = 2e-63
 Identities = 124/195 (63%), Positives = 151/195 (77%)
 Frame = -3

Query: 586  PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTG 407
            PS ANDFTAFDQSQDGAMLQFE+LKAK+ ++PE V++ YL IK + KIFLGTL+IMRLTG
Sbjct: 1319 PSLANDFTAFDQSQDGAMLQFEVLKAKHHSIPEDVLDAYLHIKTNSKIFLGTLAIMRLTG 1378

Query: 406  EGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKP 227
            EGPTFDANTECNIA+TH +F+IP+GTAQ+YAGDD AI    P + SF +++ ++ L++KP
Sbjct: 1379 EGPTFDANTECNIAFTHAKFQIPKGTAQLYAGDDSAIDGNPPVRESFRMIEQKLKLRSKP 1438

Query: 226  AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 47
                QE+G WAEFCGY ITPKG IKDP KLHASL L K  KK  +K    NV+ +Y LD 
Sbjct: 1439 VVAMQEKGDWAEFCGYRITPKGFIKDPKKLHASLVLEK--KKGNLK----NVLRSYELDL 1492

Query: 46   KLAYSLGDDLQDLLS 2
             LAY   D+L +LLS
Sbjct: 1493 ALAYQHRDELHELLS 1507