BLASTX nr result
ID: Ephedra26_contig00015543
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00015543
(832 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A... 406 e-111
ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Sela... 401 e-109
ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Sela... 401 e-109
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 398 e-108
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 395 e-107
emb|CBI16226.3| unnamed protein product [Vitis vinifera] 394 e-107
ref|XP_004169848.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 392 e-107
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s... 392 e-107
ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi... 388 e-105
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s... 388 e-105
tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family... 388 e-105
gb|EMJ09344.1| hypothetical protein PRUPE_ppa024521mg, partial [... 387 e-105
ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s... 386 e-105
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s... 386 e-105
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [... 386 e-105
gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Mor... 385 e-105
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S... 384 e-104
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 384 e-104
ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III s... 383 e-104
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s... 383 e-104
>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
gi|548832896|gb|ERM95665.1| hypothetical protein
AMTR_s00023p00196820 [Amborella trichopoda]
Length = 1383
Score = 406 bits (1044), Expect = e-111
Identities = 195/239 (81%), Positives = 216/239 (90%)
Frame = -2
Query: 831 PGANYIICQDDSRLSIRHANPRRLATELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMCH 652
PGAN++I D+ LS+R+ N +R A ELK+G VERHLEDG+IVLFNRQPSLHRMSIMCH
Sbjct: 412 PGANFVISGGDT-LSLRYGNKKRKADELKFGDFVERHLEDGEIVLFNRQPSLHRMSIMCH 470
Query: 651 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 472
RARVMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMG+Q+NLCTPKNG+
Sbjct: 471 RARVMPWRTLRFNESVCNPYNADFDGDEMNIHVPQTEEARTEALMLMGVQHNLCTPKNGE 530
Query: 471 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 292
ILVASTQDFLTSS+LITRKDTFYDR F LMCSYMGDG E+IDLPTPA+LKP+ELWTGKQ
Sbjct: 531 ILVASTQDFLTSSYLITRKDTFYDRATFSLMCSYMGDGMENIDLPTPALLKPVELWTGKQ 590
Query: 291 LFSVLVRPNAKMRVFVNFIVMEKNYSKTGETMCPNDGCVYFRNSELISGQLGKATLGYG 115
LFSVL+RP+A M+V+VN +MEKNYSK GETMC NDG VY RNSELISGQLGKATLG G
Sbjct: 591 LFSVLIRPHAHMKVYVNLSLMEKNYSKGGETMCANDGFVYIRNSELISGQLGKATLGNG 649
>ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Selaginella moellendorffii]
gi|300158014|gb|EFJ24638.1| hypothetical protein
SELMODRAFT_442419 [Selaginella moellendorffii]
Length = 1348
Score = 401 bits (1031), Expect = e-109
Identities = 187/239 (78%), Positives = 214/239 (89%)
Frame = -2
Query: 831 PGANYIICQDDSRLSIRHANPRRLATELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMCH 652
PGAN+++ D + ++ + +R+A+ELKYG +VERHLEDGDIVLFNRQPSLHRMSIMCH
Sbjct: 429 PGANFVVFPDGVKRFLKFGDRKRIASELKYGDVVERHLEDGDIVLFNRQPSLHRMSIMCH 488
Query: 651 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 472
RARVMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL+LMG+QNNLCTPKNG+
Sbjct: 489 RARVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALTLMGVQNNLCTPKNGE 548
Query: 471 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 292
ILVASTQDFLTSSFLITR+DTFYDR F LMCSYMGD EHIDLPTPAILKP+ELWTGKQ
Sbjct: 549 ILVASTQDFLTSSFLITRRDTFYDRGQFALMCSYMGDAVEHIDLPTPAILKPVELWTGKQ 608
Query: 291 LFSVLVRPNAKMRVFVNFIVMEKNYSKTGETMCPNDGCVYFRNSELISGQLGKATLGYG 115
LF VL+RP+A+++VF+NF+V EKN+ K ETMCP DG V+F+NSELI GQLGK TLG G
Sbjct: 609 LFGVLIRPSARIKVFLNFVVCEKNHKKGTETMCPKDGYVFFKNSELICGQLGKGTLGNG 667
>ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
gi|300146624|gb|EFJ13293.1| hypothetical protein
SELMODRAFT_446351 [Selaginella moellendorffii]
Length = 1393
Score = 401 bits (1031), Expect = e-109
Identities = 187/239 (78%), Positives = 214/239 (89%)
Frame = -2
Query: 831 PGANYIICQDDSRLSIRHANPRRLATELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMCH 652
PGAN+++ D + ++ + +R+A+ELKYG +VERHLEDGDIVLFNRQPSLHRMSIMCH
Sbjct: 429 PGANFVVFPDGVKRFLKFGDRKRIASELKYGDVVERHLEDGDIVLFNRQPSLHRMSIMCH 488
Query: 651 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 472
RARVMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL+LMG+QNNLCTPKNG+
Sbjct: 489 RARVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALTLMGVQNNLCTPKNGE 548
Query: 471 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 292
ILVASTQDFLTSSFLITR+DTFYDR F LMCSYMGD EHIDLPTPAILKP+ELWTGKQ
Sbjct: 549 ILVASTQDFLTSSFLITRRDTFYDRGQFALMCSYMGDAVEHIDLPTPAILKPVELWTGKQ 608
Query: 291 LFSVLVRPNAKMRVFVNFIVMEKNYSKTGETMCPNDGCVYFRNSELISGQLGKATLGYG 115
LF VL+RP+A+++VF+NF+V EKN+ K ETMCP DG V+F+NSELI GQLGK TLG G
Sbjct: 609 LFGVLIRPSARIKVFLNFVVCEKNHKKGTETMCPKDGYVFFKNSELICGQLGKGTLGNG 667
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 398 bits (1023), Expect = e-108
Identities = 192/241 (79%), Positives = 212/241 (87%), Gaps = 2/241 (0%)
Frame = -2
Query: 831 PGANYIICQDDSRLSIRHANPRRLATELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMCH 652
PGA I D S S+ + +R A ELKYGYIVERHLEDGD+VLFNRQPSLHRMSIMCH
Sbjct: 415 PGAKLIRYPDGSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCH 474
Query: 651 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 472
RAR+MPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMG+QNNLCTPKNG+
Sbjct: 475 RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGE 534
Query: 471 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 292
ILVASTQDFLTSSFLITRKDTFYDR AF LMCSYMGDG + +DLPTPAI+KP+ELWTGKQ
Sbjct: 535 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKPVELWTGKQ 594
Query: 291 LFSVLVRPNAKMRVFVNFIVMEKNYSKT--GETMCPNDGCVYFRNSELISGQLGKATLGY 118
LF+VL+RP+A +RV++N VMEK Y+K ETMCP+DG VYFRNSELISGQLGKATLG
Sbjct: 595 LFNVLLRPHANVRVYLNLTVMEKTYNKRRGKETMCPSDGFVYFRNSELISGQLGKATLGN 654
Query: 117 G 115
G
Sbjct: 655 G 655
>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
brachyantha]
Length = 1389
Score = 395 bits (1014), Expect = e-107
Identities = 188/239 (78%), Positives = 212/239 (88%)
Frame = -2
Query: 831 PGANYIICQDDSRLSIRHANPRRLATELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMCH 652
PGAN+II D ++L +++ + R A +LKYG +VERHLEDGDIVLFNRQPSLHRMSIM H
Sbjct: 405 PGANFIIQTDGTKLHLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSH 464
Query: 651 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 472
RAR+MPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAL LMG+QNNLCTPKNG+
Sbjct: 465 RARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGE 524
Query: 471 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 292
ILVASTQDFLTSSFL+TRKD FYDR +F L+CSY+GD E+IDLPTPA++KPIELWTGKQ
Sbjct: 525 ILVASTQDFLTSSFLVTRKDNFYDRSSFTLLCSYLGDAMENIDLPTPALVKPIELWTGKQ 584
Query: 291 LFSVLVRPNAKMRVFVNFIVMEKNYSKTGETMCPNDGCVYFRNSELISGQLGKATLGYG 115
LFSVLVRPNA +VF+N V EK YSK+ ETMCPNDG VYFRNSEL+SGQ+GK TLG G
Sbjct: 585 LFSVLVRPNACTKVFLNLTVKEKIYSKSRETMCPNDGFVYFRNSELLSGQVGKKTLGNG 643
>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
Length = 1819
Score = 394 bits (1013), Expect = e-107
Identities = 191/241 (79%), Positives = 211/241 (87%), Gaps = 2/241 (0%)
Frame = -2
Query: 831 PGANYIICQDDSRLSIRHANPRRLATELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMCH 652
PGA I D S S+ + +R A ELKYGYIVERHLEDGD+VLFNRQPSLHRMSIMCH
Sbjct: 415 PGAKLIRYPDGSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCH 474
Query: 651 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 472
RAR+MPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMG+QNNLCTPKNG+
Sbjct: 475 RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGE 534
Query: 471 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 292
ILVASTQDFLTSSFLITRKDTFYDR AF LMCSYMGDG + +DLPTPAI+K +ELWTGKQ
Sbjct: 535 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKAMELWTGKQ 594
Query: 291 LFSVLVRPNAKMRVFVNFIVMEKNYSKT--GETMCPNDGCVYFRNSELISGQLGKATLGY 118
LF+VL+RP+A +RV++N VMEK Y+K ETMCP+DG VYFRNSELISGQLGKATLG
Sbjct: 595 LFNVLLRPHANVRVYLNLTVMEKTYNKRRGKETMCPSDGFVYFRNSELISGQLGKATLGN 654
Query: 117 G 115
G
Sbjct: 655 G 655
>ref|XP_004169848.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit rpc1-like, partial [Cucumis sativus]
Length = 693
Score = 392 bits (1008), Expect = e-107
Identities = 192/245 (78%), Positives = 211/245 (86%), Gaps = 6/245 (2%)
Frame = -2
Query: 831 PGANYIICQDDSRLSIRHANPRRLATELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMCH 652
PGA + D S S+ + +RLA ELKYG IVERHLEDGD+VLFNRQPSLHRMSIMCH
Sbjct: 109 PGARMLRHLDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCH 168
Query: 651 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 472
R RVMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA+ LMG+QNNLCTPKNG+
Sbjct: 169 RVRVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGE 228
Query: 471 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 292
ILVASTQDFLTSSFLITRKDTFYDR AF LMCSYMGDG + +DLPTPA++KPIELWTGKQ
Sbjct: 229 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGKQ 288
Query: 291 LFSVLVRPNAKMRVFVNFIVMEKNYSKT------GETMCPNDGCVYFRNSELISGQLGKA 130
LFSVLVRP+A M+V++N V EK+YSK ETMCPNDG VYFRNSELISGQ+GKA
Sbjct: 289 LFSVLVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKA 348
Query: 129 TLGYG 115
TLG G
Sbjct: 349 TLGNG 353
>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
sativus]
Length = 1400
Score = 392 bits (1008), Expect = e-107
Identities = 192/245 (78%), Positives = 211/245 (86%), Gaps = 6/245 (2%)
Frame = -2
Query: 831 PGANYIICQDDSRLSIRHANPRRLATELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMCH 652
PGA + D S S+ + +RLA ELKYG IVERHLEDGD+VLFNRQPSLHRMSIMCH
Sbjct: 411 PGARMLRHLDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCH 470
Query: 651 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 472
R RVMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA+ LMG+QNNLCTPKNG+
Sbjct: 471 RVRVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGE 530
Query: 471 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 292
ILVASTQDFLTSSFLITRKDTFYDR AF LMCSYMGDG + +DLPTPA++KPIELWTGKQ
Sbjct: 531 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGKQ 590
Query: 291 LFSVLVRPNAKMRVFVNFIVMEKNYSKT------GETMCPNDGCVYFRNSELISGQLGKA 130
LFSVLVRP+A M+V++N V EK+YSK ETMCPNDG VYFRNSELISGQ+GKA
Sbjct: 591 LFSVLVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKA 650
Query: 129 TLGYG 115
TLG G
Sbjct: 651 TLGNG 655
>ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi|162691719|gb|EDQ78080.1|
predicted protein [Physcomitrella patens]
Length = 1397
Score = 388 bits (997), Expect = e-105
Identities = 189/241 (78%), Positives = 206/241 (85%), Gaps = 2/241 (0%)
Frame = -2
Query: 831 PGANYIICQDDSRLSIRHANPRRLATELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMCH 652
PGAN+II D ++L ++ + RR A ELKYG IVERHLEDGDIVLFNRQPSLHRMSIM H
Sbjct: 424 PGANFIIFPDGNKLYLKFGDRRRYAAELKYGDIVERHLEDGDIVLFNRQPSLHRMSIMSH 483
Query: 651 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 472
RAR+MPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAL LMG+ NNLCTPKNG+
Sbjct: 484 RARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVANNLCTPKNGE 543
Query: 471 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 292
ILVASTQDFLTSS+L TRKDTFYDR F C YMGD +E+IDLPTP+I+KP+ELWTGKQ
Sbjct: 544 ILVASTQDFLTSSYLFTRKDTFYDRATFTQACVYMGDAAENIDLPTPSIIKPMELWTGKQ 603
Query: 291 LFSVLVRPNAKMRVFVNFIVMEKNYSKTGE--TMCPNDGCVYFRNSELISGQLGKATLGY 118
LFSVLVRPNAK RVFVN + EKNY K +MCP DG VYFRNSELI GQLGKATLG
Sbjct: 604 LFSVLVRPNAKTRVFVNLVSYEKNYDKKANKGSMCPTDGYVYFRNSELICGQLGKATLGN 663
Query: 117 G 115
G
Sbjct: 664 G 664
>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Setaria
italica]
Length = 1397
Score = 388 bits (996), Expect = e-105
Identities = 189/255 (74%), Positives = 213/255 (83%), Gaps = 16/255 (6%)
Frame = -2
Query: 831 PGANYIICQDDSRLSIRHANPRRLATELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMCH 652
PGAN+II D ++LS+++ + R A +LK GY VERHLEDGD+VLFNRQPSLHRMSIM H
Sbjct: 408 PGANFIITPDGTKLSLKYGDRRIHARDLKCGYTVERHLEDGDVVLFNRQPSLHRMSIMSH 467
Query: 651 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 472
RAR+MPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAL LMG+QNNLCTPKNG+
Sbjct: 468 RARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGE 527
Query: 471 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 292
ILVASTQDFLTSSFL+TRKD FYDR +F L+CSY+GD E+IDLPTPA++KPIELWTGKQ
Sbjct: 528 ILVASTQDFLTSSFLVTRKDAFYDRSSFALLCSYVGDAMENIDLPTPALIKPIELWTGKQ 587
Query: 291 LFSVLVRPNAKMRVFVNFIVMEKNYSKT----------------GETMCPNDGCVYFRNS 160
LFSVLVRPNA+ +VF+N V EK YSK ETMCPNDG VYFRNS
Sbjct: 588 LFSVLVRPNARTKVFLNLAVKEKIYSKKKEKKEGEEEEKETMCGRETMCPNDGYVYFRNS 647
Query: 159 ELISGQLGKATLGYG 115
EL+SGQ+GKATLG G
Sbjct: 648 ELLSGQVGKATLGNG 662
>tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 1030
Score = 388 bits (996), Expect = e-105
Identities = 188/255 (73%), Positives = 212/255 (83%), Gaps = 16/255 (6%)
Frame = -2
Query: 831 PGANYIICQDDSRLSIRHANPRRLATELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMCH 652
PGAN++ D + S+++ + R A +LK G IVERHLEDGD+VLFNRQPSLHRMSIMCH
Sbjct: 405 PGANFVTQPDGMKQSLKYGDRRITARDLKCGCIVERHLEDGDVVLFNRQPSLHRMSIMCH 464
Query: 651 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 472
RAR+MPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAL LMG+QNNLCTPKNG+
Sbjct: 465 RARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGE 524
Query: 471 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 292
ILVASTQDFLTSSFL+TRKDTFYDR +F L+CSY+GDG E+IDLPTPA++KP+ELWTGKQ
Sbjct: 525 ILVASTQDFLTSSFLVTRKDTFYDRSSFTLLCSYLGDGMENIDLPTPALIKPVELWTGKQ 584
Query: 291 LFSVLVRPNAKMRVFVNFIVMEKNYSKT----------------GETMCPNDGCVYFRNS 160
LFSVLVRPNA +VF+N V EK YSK ETMCPNDG VYFRNS
Sbjct: 585 LFSVLVRPNAHTKVFLNLAVQEKIYSKKKGKKEGGEEVKETMCGRETMCPNDGYVYFRNS 644
Query: 159 ELISGQLGKATLGYG 115
EL+SGQ+GKATLG G
Sbjct: 645 ELLSGQVGKATLGNG 659
>gb|EMJ09344.1| hypothetical protein PRUPE_ppa024521mg, partial [Prunus persica]
Length = 867
Score = 387 bits (995), Expect = e-105
Identities = 188/243 (77%), Positives = 211/243 (86%), Gaps = 4/243 (1%)
Frame = -2
Query: 831 PGANYIICQDDSRLSIRHANPRRLATELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMCH 652
PGA + D + S++ N + A LKYG IVERHLEDGDIVLFNRQPSLHRMSIMCH
Sbjct: 422 PGARMLRNPDGTEWSLK-VNRKNAADGLKYGDIVERHLEDGDIVLFNRQPSLHRMSIMCH 480
Query: 651 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 472
RA+VMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA+ LMG+QNNLCTPKNG+
Sbjct: 481 RAKVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAVMLMGVQNNLCTPKNGE 540
Query: 471 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 292
+LVASTQDFLTSSFLITRKDTFYDR +F LMCSYMGDG++ +DLPTPA++KPIELWTGKQ
Sbjct: 541 VLVASTQDFLTSSFLITRKDTFYDRASFSLMCSYMGDGTDPVDLPTPAVIKPIELWTGKQ 600
Query: 291 LFSVLVRPNAKMRVFVNFIVMEKNYSKT----GETMCPNDGCVYFRNSELISGQLGKATL 124
LFSVLVRPN+ +RV++NF V EK+YSKT E MCPNDG VYFRNSELI+GQLGK TL
Sbjct: 601 LFSVLVRPNSNVRVYLNFTVNEKSYSKTEDGGPEAMCPNDGFVYFRNSELIAGQLGKGTL 660
Query: 123 GYG 115
G G
Sbjct: 661 GNG 663
>ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X2 [Solanum tuberosum]
Length = 1243
Score = 386 bits (991), Expect = e-105
Identities = 184/239 (76%), Positives = 209/239 (87%)
Frame = -2
Query: 831 PGANYIICQDDSRLSIRHANPRRLATELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMCH 652
PGA +I D S +S+ + +R A ELK+GYIV+RHLEDGDIVLFNRQPSLHRMSIM H
Sbjct: 412 PGAKFIRHPDGSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSH 471
Query: 651 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 472
RAR+MPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMG+QNNLCTPK+G+
Sbjct: 472 RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGE 531
Query: 471 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 292
ILVASTQDFLTSSFLITRKDTFY+R +F L+CSYMGD + DLP+PA +KP+ELWTGKQ
Sbjct: 532 ILVASTQDFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQ 591
Query: 291 LFSVLVRPNAKMRVFVNFIVMEKNYSKTGETMCPNDGCVYFRNSELISGQLGKATLGYG 115
LF +L+RP +KMRV+VN V EK+YS GETMCP+DG VYFRNSELISGQLGKATLG G
Sbjct: 592 LFHMLLRPYSKMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNG 650
>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X1 [Solanum tuberosum]
Length = 1394
Score = 386 bits (991), Expect = e-105
Identities = 184/239 (76%), Positives = 209/239 (87%)
Frame = -2
Query: 831 PGANYIICQDDSRLSIRHANPRRLATELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMCH 652
PGA +I D S +S+ + +R A ELK+GYIV+RHLEDGDIVLFNRQPSLHRMSIM H
Sbjct: 412 PGAKFIRHPDGSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSH 471
Query: 651 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 472
RAR+MPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMG+QNNLCTPK+G+
Sbjct: 472 RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGE 531
Query: 471 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 292
ILVASTQDFLTSSFLITRKDTFY+R +F L+CSYMGD + DLP+PA +KP+ELWTGKQ
Sbjct: 532 ILVASTQDFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQ 591
Query: 291 LFSVLVRPNAKMRVFVNFIVMEKNYSKTGETMCPNDGCVYFRNSELISGQLGKATLGYG 115
LF +L+RP +KMRV+VN V EK+YS GETMCP+DG VYFRNSELISGQLGKATLG G
Sbjct: 592 LFHMLLRPYSKMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNG 650
>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 1394
Score = 386 bits (991), Expect = e-105
Identities = 189/246 (76%), Positives = 207/246 (84%), Gaps = 7/246 (2%)
Frame = -2
Query: 831 PGANYIICQDDSRLSIRHANPRRLATELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMCH 652
PGA + D S + +R+A ELK G IV RHLEDGD+VLFNRQPSLHRMSIMCH
Sbjct: 417 PGARMVTYPDGSSKMLTGNYRKRIAEELKSGCIVHRHLEDGDVVLFNRQPSLHRMSIMCH 476
Query: 651 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 472
RAR+MPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA LMG+QNNLCTPKNG+
Sbjct: 477 RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAFLLMGVQNNLCTPKNGE 536
Query: 471 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 292
ILVASTQDFLTSSFLITRKDTFYDR AF LMCSYM DG + +DLPTP++LKPIELWTGKQ
Sbjct: 537 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMNDGMDLVDLPTPSVLKPIELWTGKQ 596
Query: 291 LFSVLVRPNAKMRVFVNFIVMEKNYS-------KTGETMCPNDGCVYFRNSELISGQLGK 133
LFSVL+RP+A +RV+VN I+ EKNYS K ETMCPNDG VYFRNSELISGQLGK
Sbjct: 597 LFSVLLRPHANVRVYVNLILKEKNYSRPNKEHKKERETMCPNDGYVYFRNSELISGQLGK 656
Query: 132 ATLGYG 115
ATLG G
Sbjct: 657 ATLGNG 662
>gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
Length = 1179
Score = 385 bits (990), Expect = e-105
Identities = 193/242 (79%), Positives = 207/242 (85%), Gaps = 7/242 (2%)
Frame = -2
Query: 819 YIICQDDSRLSIRHANPRRLATELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMCHRARV 640
Y +C +SIR + +RLA ELKYG IVERHLEDGDIVLFNRQPSLHRMSIMCHRARV
Sbjct: 204 YYLC---GHVSIR-VSRKRLADELKYGDIVERHLEDGDIVLFNRQPSLHRMSIMCHRARV 259
Query: 639 MPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGDILVA 460
MPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA+ LMG+QNNLCTPKNG+ILVA
Sbjct: 260 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVA 319
Query: 459 STQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQLFSV 280
STQDFLTSSFLITRKDTFYDR AF LMCSYMGD EH DLPTPA++KP+ELWTGKQLFSV
Sbjct: 320 STQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMEHNDLPTPAVIKPVELWTGKQLFSV 379
Query: 279 LVRPNAKMRVFVNFIVMEKNYS-------KTGETMCPNDGCVYFRNSELISGQLGKATLG 121
LVRPNA +RVF+N V EKNYS + ETMCP DG V FRNSELISGQLGK TLG
Sbjct: 380 LVRPNANVRVFLNLTVREKNYSNKLQENEREFETMCPADGFVCFRNSELISGQLGKGTLG 439
Query: 120 YG 115
G
Sbjct: 440 NG 441
>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein
SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 384 bits (987), Expect = e-104
Identities = 188/252 (74%), Positives = 210/252 (83%), Gaps = 13/252 (5%)
Frame = -2
Query: 831 PGANYIICQDDSRLSIRHANPRRLATELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMCH 652
PGAN++ D + S+++ + R A +LK G IVERHLEDGD+VLFNRQPSLHRMSIM H
Sbjct: 405 PGANFVTQPDGMKQSLKYGDRRITARDLKCGCIVERHLEDGDVVLFNRQPSLHRMSIMSH 464
Query: 651 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 472
RAR+MPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAL LMG+QNNLCTPKNG+
Sbjct: 465 RARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGE 524
Query: 471 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 292
ILVASTQDFLTSSFL+TRKDTFYDR +F L+CSY+GD E+IDLPTPA++KPIELWTGKQ
Sbjct: 525 ILVASTQDFLTSSFLVTRKDTFYDRSSFTLLCSYLGDAMENIDLPTPALIKPIELWTGKQ 584
Query: 291 LFSVLVRPNAKMRVFVNFIVMEKNYSKT-------------GETMCPNDGCVYFRNSELI 151
LFSVLVRPNA RVF+N V EK YSK ETMCPNDG VYFRNSEL+
Sbjct: 585 LFSVLVRPNAHTRVFLNLAVQEKIYSKKKGKKEAGEETMCGRETMCPNDGYVYFRNSELL 644
Query: 150 SGQLGKATLGYG 115
SGQ+GKATLG G
Sbjct: 645 SGQVGKATLGNG 656
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 384 bits (986), Expect = e-104
Identities = 186/245 (75%), Positives = 210/245 (85%), Gaps = 6/245 (2%)
Frame = -2
Query: 831 PGANYIICQDDSRLSIRHANPRRLATELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMCH 652
PGAN+II D ++L +++ + R A +LKYG +VERHLEDGDIVLFNRQPSLHRMSIM H
Sbjct: 405 PGANFIIQPDGTKLHLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSH 464
Query: 651 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 472
RAR+MPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAL LMG+QNNLCTPKNG+
Sbjct: 465 RARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGE 524
Query: 471 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 292
ILVASTQDFLTSSFL+TRKD FYDR +F L+CSY+GD E+IDLPTPA++KPIELWTGKQ
Sbjct: 525 ILVASTQDFLTSSFLVTRKDNFYDRSSFSLLCSYLGDAMENIDLPTPALIKPIELWTGKQ 584
Query: 291 LFSVLVRPNAKMRVFVNFIVMEKNY------SKTGETMCPNDGCVYFRNSELISGQLGKA 130
LFSVLVRPNA +VF+N V EK Y + E MCPNDG VYFRNSEL+SGQ+GKA
Sbjct: 585 LFSVLVRPNACTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGKA 644
Query: 129 TLGYG 115
TLG G
Sbjct: 645 TLGNG 649
>ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1400
Score = 383 bits (984), Expect = e-104
Identities = 188/250 (75%), Positives = 209/250 (83%), Gaps = 11/250 (4%)
Frame = -2
Query: 831 PGANYIICQDDSRLSIRHANPRRLATELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMCH 652
PGAN+II D+++L + + + R A +LKYG IVERHLEDGDIVLFNRQPSLHRMSIM H
Sbjct: 410 PGANFIIQPDETKLHLNYCDRSRAARDLKYGCIVERHLEDGDIVLFNRQPSLHRMSIMSH 469
Query: 651 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 472
RAR+MPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEA LMG+Q+NLCTPKNG+
Sbjct: 470 RARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAFLLMGVQSNLCTPKNGE 529
Query: 471 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 292
ILVASTQDFLTSSFL+TRKDTFYDR F L+CSY+GD E+IDLPTPAI+KP+ELWTGKQ
Sbjct: 530 ILVASTQDFLTSSFLVTRKDTFYDRSYFTLLCSYLGDAMENIDLPTPAIIKPVELWTGKQ 589
Query: 291 LFSVLVRPNAKMRVFVNFIVMEKNYSK-----------TGETMCPNDGCVYFRNSELISG 145
LFSVLVRPNA +VF+N V EK Y K ETMCPNDG VYFRNSEL+SG
Sbjct: 590 LFSVLVRPNACTKVFLNLTVEEKVYIKHKERDKKAITVLEETMCPNDGFVYFRNSELLSG 649
Query: 144 QLGKATLGYG 115
QLGK TLG G
Sbjct: 650 QLGKKTLGNG 659
>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
lycopersicum]
Length = 1390
Score = 383 bits (983), Expect = e-104
Identities = 182/239 (76%), Positives = 209/239 (87%)
Frame = -2
Query: 831 PGANYIICQDDSRLSIRHANPRRLATELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMCH 652
PGA +I D + +S+ ++ +R A ELK+GYIV+RHLEDGDIVLFNRQPSLHRMSIM H
Sbjct: 412 PGAKFIRHPDGNEMSLMFSSRKRYADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSH 471
Query: 651 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 472
RAR+MPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMG+QNNLCTPK+G+
Sbjct: 472 RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGE 531
Query: 471 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 292
ILVASTQDFLTSSFLITRKDTFY+R +F L+CSYMGD + DLP+PA +KP+ELWTGKQ
Sbjct: 532 ILVASTQDFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQ 591
Query: 291 LFSVLVRPNAKMRVFVNFIVMEKNYSKTGETMCPNDGCVYFRNSELISGQLGKATLGYG 115
LF VL+RP +KMRV+VN + EK+YS GETMC +DG VYFRNSELISGQLGKATLG G
Sbjct: 592 LFHVLLRPYSKMRVYVNLTLTEKSYSGKGETMCSSDGFVYFRNSELISGQLGKATLGNG 650