BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00014738
         (1479 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [A...   317   6e-84
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   303   1e-79
ref|XP_006452718.1| hypothetical protein CICLE_v10007802mg [Citr...   293   1e-76
ref|XP_006452717.1| hypothetical protein CICLE_v10007802mg [Citr...   293   1e-76
ref|XP_006474796.1| PREDICTED: probable RNA polymerase II transc...   291   6e-76
ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group] g...   281   5e-73
ref|XP_003573495.1| PREDICTED: probable RNA polymerase II transc...   281   5e-73
ref|XP_004496077.1| PREDICTED: probable RNA polymerase II transc...   280   9e-73
ref|XP_006660062.1| PREDICTED: probable RNA polymerase II transc...   280   1e-72
ref|XP_004972829.1| PREDICTED: probable RNA polymerase II transc...   280   1e-72
ref|XP_006352543.1| PREDICTED: probable RNA polymerase II transc...   279   2e-72
ref|XP_004248296.1| PREDICTED: probable RNA polymerase II transc...   279   2e-72
ref|XP_006589332.1| PREDICTED: probable RNA polymerase II transc...   278   6e-72
dbj|BAK04994.1| predicted protein [Hordeum vulgare subsp. vulgare]    278   6e-72
emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]   278   6e-72
gb|ESW16172.1| hypothetical protein PHAVU_007G134900g [Phaseolus...   277   7e-72
ref|NP_175971.3| probable RNA polymerase II transcription factor...   277   9e-72
ref|XP_003591640.1| General transcription factor IIH subunit [Me...   276   2e-71
gb|ACG24327.1| BSD domain containing protein [Zea mays]               274   6e-71
ref|XP_002443866.1| hypothetical protein SORBIDRAFT_07g003540 [S...   274   8e-71

>ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [Amborella trichopoda]
            gi|548861733|gb|ERN19104.1| hypothetical protein
            AMTR_s00061p00135540 [Amborella trichopoda]
          Length = 626

 Score =  317 bits (813), Expect = 6e-84
 Identities = 173/386 (44%), Positives = 245/386 (63%), Gaps = 3/386 (0%)
 Frame = +2

Query: 2    EKPAVRRAYLMNVPFKMKEIEFWNKYCRSEYLYRTDNXXXXXXXXXXXXXXXQFLD-DES 178
            EKPAV +A+L  VP KM E +FW KYCR+EYL+RT N                FL  D+ 
Sbjct: 219  EKPAVHQAFLKFVPSKMSERDFWTKYCRAEYLHRTKNSVAAAAEAAEDEELAVFLKHDDI 278

Query: 179  LVNEARCKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 358
            L +EAR KIR+VDP VDMA +  DDYSHL GHG  +D  +E +D ++   KRTL++D+NR
Sbjct: 279  LASEARRKIRRVDPTVDMAADLGDDYSHLPGHGILRDGSKESVDSESELPKRTLLQDLNR 338

Query: 359  HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIE 538
            HAAVVLEG+ L D + G+TRTVAEAL R++Q  AEVA  T D   +++  +   +M++IE
Sbjct: 339  HAAVVLEGRTL-DVELGDTRTVAEALARSKQ--AEVATETSDETENQKRLERVSQMTEIE 395

Query: 539  DLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAE--HFNPDEIYGSLAYAL 712
            DLQA ++ PYA LCI+D R+YF SQ+A+   A  D       +  H +  + Y SL   +
Sbjct: 396  DLQAPRSLPYAPLCIKDPREYFDSQRANAFKATGDTGSGVNKDCCHLSTKQAYESLRAQI 455

Query: 713  LGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQEQDKLREQW 892
            L ++  G KDPI+  + A+K  N+++Q +SST    GK  Q  V   LP + +++L + W
Sbjct: 456  LEVKSVGFKDPIVIPDLALKVLNDVNQQLSSTDPQLGKNPQATVLDMLPHRTKEELLQHW 515

Query: 893  KTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIHP 1072
             +IQE+L  FW+   + +TF+  K+ R+KDAMAQ Y  L   K S + E+RH++SLL+ P
Sbjct: 516  TSIQELLRHFWSSYPLTTTFLHAKVNRVKDAMAQIYRKLPEVKESVQSEFRHQVSLLVKP 575

Query: 1073 MLQALDAAFENNEVDSRKRSSKISEK 1150
            MLQ LD AF++ + + +KRS+K   K
Sbjct: 576  MLQVLDEAFKHYDAEMQKRSTKTMSK 601


>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1 [Vitis vinifera] gi|296090002|emb|CBI39821.3| unnamed
            protein product [Vitis vinifera]
          Length = 602

 Score =  303 bits (776), Expect = 1e-79
 Identities = 172/390 (44%), Positives = 235/390 (60%), Gaps = 3/390 (0%)
 Frame = +2

Query: 2    EKPAVRRAYLMNVPFKMKEIEFWNKYCRSEYLYRTDNXXXXXXXXXXXXXXXQFLD-DES 178
            EKPAV +A+L  VP KM E +FWNKYCR+EYL+ T N                FL  D+ 
Sbjct: 215  EKPAVHQAFLNFVPNKMTEKDFWNKYCRAEYLHCTRNTVAAAAEAAEDEELAVFLKHDDI 274

Query: 179  LVNEARCKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 358
            L NEAR KIR+VDP +DM  +  DDY HL  HG  +D  +E ID    Q +RTL +D+NR
Sbjct: 275  LANEARRKIRRVDPTLDMEADQGDDYMHLPDHGIFRDGSKEIIDPQYEQYRRTLSQDLNR 334

Query: 359  HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIE 538
            HAAVVLEG+ + D +  +TRTVAEAL ++++   E A    D        +    M++IE
Sbjct: 335  HAAVVLEGRPI-DVELEDTRTVAEALAKSKR--VEAANEKSDGSVTRERLERISRMTEIE 391

Query: 539  DLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAEH--FNPDEIYGSLAYAL 712
            DLQA +  P+A+LCI+D R YF SQQA+ +    D     K      +  E YGSL   +
Sbjct: 392  DLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSTQEAYGSLRGFI 451

Query: 713  LGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQEQDKLREQW 892
              I+  GL DPI+  + A+K  N L+Q ISSTK+H GK  Q+ V   LP   +++L   W
Sbjct: 452  SEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKNPQESVLDRLPIITKEELLHHW 511

Query: 893  KTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIHP 1072
             +IQE+L  FW+   + +T++  K  RLKDAM+Q Y  LQ  K S + ++RH++SLL+ P
Sbjct: 512  TSIQELLRHFWSSYPITTTYLYTKASRLKDAMSQIYPKLQEIKESVQSDFRHQVSLLVQP 571

Query: 1073 MLQALDAAFENNEVDSRKRSSKISEKAAGF 1162
            MLQALDAAF + + D +KRS++  E+  GF
Sbjct: 572  MLQALDAAFAHYDADQQKRSARSGERPNGF 601


>ref|XP_006452718.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
            gi|557555944|gb|ESR65958.1| hypothetical protein
            CICLE_v10007802mg [Citrus clementina]
          Length = 564

 Score =  293 bits (751), Expect = 1e-76
 Identities = 164/388 (42%), Positives = 233/388 (60%), Gaps = 1/388 (0%)
 Frame = +2

Query: 2    EKPAVRRAYLMNVPFKMKEIEFWNKYCRSEYLYRTDNXXXXXXXXXXXXXXXQFL-DDES 178
            EKPAV RA+L  VP KM E+EFW KYCR+EYL RT N                FL +D+ 
Sbjct: 182  EKPAVHRAFLNFVPNKMTEMEFWTKYCRAEYLSRTKNYHAVVAEAAEDEELAVFLKEDDI 241

Query: 179  LVNEARCKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 358
            L NE R KIR+VDP +DM  +  DDY+HL  HG  +D  +E  +  +   +RTL++D+NR
Sbjct: 242  LANEVRKKIRRVDPTLDMEADEGDDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQDLNR 301

Query: 359  HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIE 538
            HAAVVLEG+ +      +TR +AEAL R+++ N        DN ++E   D    +++IE
Sbjct: 302  HAAVVLEGRTIDVEREDSTRALAEALARSKRGNEGA-----DNNANEERLDRTPRVAEIE 356

Query: 539  DLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAEHFNPDEIYGSLAYALLG 718
            DLQA    P A L I+D R+YF SQQA+ + A  D +   K    +  E YGS+  A+  
Sbjct: 357  DLQAPHCLPLAPLSIKDAREYFDSQQANTLKASRDSQASMKCS-LSRQEAYGSVRDAISE 415

Query: 719  IRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQEQDKLREQWKT 898
            I++ GL DPI+N E A+K  + L+  ISS KYH GK  ++ V   LP   ++KL   W +
Sbjct: 416  IKDMGLSDPIVNPEVALKVYSGLTHNISSIKYHLGKNPRETVLDRLPSATKEKLLYHWMS 475

Query: 899  IQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIHPML 1078
            IQE+L  FW+   + + ++ +K+ RLKDA++  Y  L+  K S   + RH++SLL+ PM 
Sbjct: 476  IQELLKHFWSSYPITTPYLYSKVNRLKDALSNIYPQLEEMKESLPADLRHQVSLLVRPMQ 535

Query: 1079 QALDAAFENNEVDSRKRSSKISEKAAGF 1162
            QALDAA ++ + D +KRS+K  EK  G+
Sbjct: 536  QALDAAIQHYDADLQKRSAKSGEKPNGY 563


>ref|XP_006452717.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
            gi|557555943|gb|ESR65957.1| hypothetical protein
            CICLE_v10007802mg [Citrus clementina]
          Length = 597

 Score =  293 bits (751), Expect = 1e-76
 Identities = 164/388 (42%), Positives = 233/388 (60%), Gaps = 1/388 (0%)
 Frame = +2

Query: 2    EKPAVRRAYLMNVPFKMKEIEFWNKYCRSEYLYRTDNXXXXXXXXXXXXXXXQFL-DDES 178
            EKPAV RA+L  VP KM E+EFW KYCR+EYL RT N                FL +D+ 
Sbjct: 215  EKPAVHRAFLNFVPNKMTEMEFWTKYCRAEYLSRTKNYHAVVAEAAEDEELAVFLKEDDI 274

Query: 179  LVNEARCKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 358
            L NE R KIR+VDP +DM  +  DDY+HL  HG  +D  +E  +  +   +RTL++D+NR
Sbjct: 275  LANEVRKKIRRVDPTLDMEADEGDDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQDLNR 334

Query: 359  HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIE 538
            HAAVVLEG+ +      +TR +AEAL R+++ N        DN ++E   D    +++IE
Sbjct: 335  HAAVVLEGRTIDVEREDSTRALAEALARSKRGNEGA-----DNNANEERLDRTPRVAEIE 389

Query: 539  DLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAEHFNPDEIYGSLAYALLG 718
            DLQA    P A L I+D R+YF SQQA+ + A  D +   K    +  E YGS+  A+  
Sbjct: 390  DLQAPHCLPLAPLSIKDAREYFDSQQANTLKASRDSQASMKCS-LSRQEAYGSVRDAISE 448

Query: 719  IRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQEQDKLREQWKT 898
            I++ GL DPI+N E A+K  + L+  ISS KYH GK  ++ V   LP   ++KL   W +
Sbjct: 449  IKDMGLSDPIVNPEVALKVYSGLTHNISSIKYHLGKNPRETVLDRLPSATKEKLLYHWMS 508

Query: 899  IQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIHPML 1078
            IQE+L  FW+   + + ++ +K+ RLKDA++  Y  L+  K S   + RH++SLL+ PM 
Sbjct: 509  IQELLKHFWSSYPITTPYLYSKVNRLKDALSNIYPQLEEMKESLPADLRHQVSLLVRPMQ 568

Query: 1079 QALDAAFENNEVDSRKRSSKISEKAAGF 1162
            QALDAA ++ + D +KRS+K  EK  G+
Sbjct: 569  QALDAAIQHYDADLQKRSAKSGEKPNGY 596


>ref|XP_006474796.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Citrus sinensis]
          Length = 597

 Score =  291 bits (744), Expect = 6e-76
 Identities = 163/388 (42%), Positives = 232/388 (59%), Gaps = 1/388 (0%)
 Frame = +2

Query: 2    EKPAVRRAYLMNVPFKMKEIEFWNKYCRSEYLYRTDNXXXXXXXXXXXXXXXQFL-DDES 178
            EKPAV RA+L  VP KM E+EFW KYCR+EYL RT N                FL +D+ 
Sbjct: 215  EKPAVHRAFLNFVPNKMTEMEFWTKYCRAEYLSRTKNYHAVVAEAAEDEELAVFLKEDDI 274

Query: 179  LVNEARCKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 358
            L NE R KIR+VDP +DM  +  DDY+HL  HG  +D  +E  +  +   +RTL++D+NR
Sbjct: 275  LANEVRKKIRRVDPTLDMEADEGDDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQDLNR 334

Query: 359  HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIE 538
            HAAVVLEG+ +      +TR +AEAL R+++ N        DN ++E   D    +++IE
Sbjct: 335  HAAVVLEGRTIDVEREDSTRALAEALARSKRGNEGA-----DNNANEERLDRTPRVAEIE 389

Query: 539  DLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAEHFNPDEIYGSLAYALLG 718
            DLQA    P A L I+D R+YF SQQA+ + A  D +   K    +  E Y S+  A+  
Sbjct: 390  DLQAPHCLPLAPLSIKDAREYFDSQQANTLKASRDAQASMKCS-LSKQEAYRSVRDAISE 448

Query: 719  IRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQEQDKLREQWKT 898
            I++ GL DPI+N E A+K  + L+  ISS KYH GK  ++ V   LP   ++KL   W +
Sbjct: 449  IKDMGLSDPIVNPEVALKVYSGLTHNISSIKYHLGKNPRETVLDRLPSATKEKLLYHWMS 508

Query: 899  IQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIHPML 1078
            IQE+L  FW+   + + ++ +K+ RLKDA++  Y  L+  K S   + RH++SLL+ PM 
Sbjct: 509  IQELLKHFWSSYPITTPYLYSKVNRLKDALSNIYPQLEEMKESLPADLRHQVSLLVRPMQ 568

Query: 1079 QALDAAFENNEVDSRKRSSKISEKAAGF 1162
            QALDAA ++ + D +KRS+K  EK  G+
Sbjct: 569  QALDAAIQHYDADLQKRSAKSGEKPNGY 596


>ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group]
            gi|38636938|dbj|BAD03200.1| unknown protein [Oryza sativa
            Japonica Group] gi|113623552|dbj|BAF23497.1| Os08g0338200
            [Oryza sativa Japonica Group]
            gi|215686948|dbj|BAG90767.1| unnamed protein product
            [Oryza sativa Japonica Group]
          Length = 604

 Score =  281 bits (719), Expect = 5e-73
 Identities = 159/391 (40%), Positives = 241/391 (61%), Gaps = 4/391 (1%)
 Frame = +2

Query: 2    EKPAVRRAYLMNVPFKMKEIEFWNKYCRSEYLYRTDNXXXXXXXXXXXXXXXQFL-DDES 178
            EKPAV RA+L  VP KM E +FW KY R+EYL RT N                FL +D+ 
Sbjct: 220  EKPAVHRAFLDFVPKKMSEKDFWTKYFRAEYLLRTKNTVAATAEAAEDEELAIFLKNDDI 279

Query: 179  LVNEARCKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 358
            L  EAR KI++VDP +DM  +  DDY HL  HG  +D  +E ID D   ++RTL +D+NR
Sbjct: 280  LAKEARLKIKRVDPTLDMEADAGDDYIHLPDHGIIRDGSKETIDNDGELARRTLSQDLNR 339

Query: 359  HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIE 538
            HAAVVLEG++ SD +  +T+TVAEA+ R++++    +++  D+ + ER       M++IE
Sbjct: 340  HAAVVLEGRS-SDVELTDTKTVAEAIARSKKEPP--SSSISDDTNHERLVK-VARMTEIE 395

Query: 539  DLQATQTDPYASLCIRDHRKYFSSQQASPMHA---QSDRRYLGKAEHFNPDEIYGSLAYA 709
            DLQA ++ PYA LCI+D R+YF SQQA+ + +    +D R+       + D+ +  L   
Sbjct: 396  DLQAPRSLPYAPLCIKDPREYFDSQQANALRSLGGNNDGRHARNCR-LSTDDAFDHLLGQ 454

Query: 710  LLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQEQDKLREQ 889
            +  I+ +GL  P++ ++ A+K  N L++ IS ++  N K  Q  +   +P++ +D+L + 
Sbjct: 455  ISSIKVNGLNYPVIQSDVALKVLNELNEGISRSRRLNLKNPQDSLLGQIPRRTRDELMDH 514

Query: 890  WKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIH 1069
            W  IQE+L  FW+   + ++ + NK++R+KDAM Q Y  LQ  K S + + RHEIS L+ 
Sbjct: 515  WAAIQELLQHFWSSYPITTSVLYNKVQRIKDAMTQIYQKLQDIKESAQPDVRHEISQLVK 574

Query: 1070 PMLQALDAAFENNEVDSRKRSSKISEKAAGF 1162
            PM QALDAAF N++++ +++SSK   K  GF
Sbjct: 575  PMTQALDAAF-NHDLEQQQKSSKSGNKPNGF 604


>ref|XP_003573495.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Brachypodium distachyon]
          Length = 602

 Score =  281 bits (719), Expect = 5e-73
 Identities = 157/388 (40%), Positives = 233/388 (60%), Gaps = 1/388 (0%)
 Frame = +2

Query: 2    EKPAVRRAYLMNVPFKMKEIEFWNKYCRSEYLYRTDNXXXXXXXXXXXXXXXQFL-DDES 178
            EKPAV RA+L  VP K+ E +FW KYCR+EYL RT N                FL +D+ 
Sbjct: 220  EKPAVHRAFLDYVPKKLSEKDFWTKYCRAEYLLRTKNTLAAKAEAADDEELAIFLRNDDI 279

Query: 179  LVNEARCKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 358
            +  EA+ KI++VDP +DM  +  DDY HL  HG  +D  RE  D D+  ++RTL +D+NR
Sbjct: 280  VAKEAKLKIKRVDPTLDMEADAGDDYIHLPDHGILRDGSRETTDTDSELARRTLSQDLNR 339

Query: 359  HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIE 538
            HAAVVLEG+  +D +  + +TVAEAL R++ +     ++  D+ S ER       M++IE
Sbjct: 340  HAAVVLEGRK-TDVEIADAKTVAEALARSKTETP--CSSIADDASHERLLK-VARMTEIE 395

Query: 539  DLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAEHFNPDEIYGSLAYALLG 718
            DLQA ++ PYA LCI+D R+YF SQQA+P+          ++   + D+ +  L   +  
Sbjct: 396  DLQAPRSLPYAPLCIKDPREYFDSQQANPLRPLGGDGRKARSCSLSTDDAFRHLMDQISS 455

Query: 719  IRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQEQDKLREQWKT 898
            ++ + L  P++ +  A+K  N L++ IS ++  N K  Q  +   LP + +D+L + W  
Sbjct: 456  VKVNKLSCPVVQSNVALKVLNELNEGISRSRRLNLKNPQDSLLGRLPHRTRDELMDHWTA 515

Query: 899  IQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIHPML 1078
            IQE+L  FW+   + +T + NKI+R+KDAM Q Y  LQ  K S + + RHEIS L+ PM 
Sbjct: 516  IQELLRHFWSSYPITTTVLYNKIQRVKDAMTQIYQKLQDIKESAQPDVRHEISQLVKPMT 575

Query: 1079 QALDAAFENNEVDSRKRSSKISEKAAGF 1162
            QALDAAF N++++ +++SSK   K  GF
Sbjct: 576  QALDAAF-NHDLEQQQKSSKTGNKPNGF 602


>ref|XP_004496077.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Cicer arietinum]
          Length = 586

 Score =  280 bits (717), Expect = 9e-73
 Identities = 157/382 (41%), Positives = 229/382 (59%), Gaps = 4/382 (1%)
 Frame = +2

Query: 5    KPAVRRAYLMNVPFKMKEIEFWNKYCRSEYLYRTDNXXXXXXXXXXXXXXXQFL-DDESL 181
            KPAV +A+L  VP KM E++FWNKY ++EY++ T N                FL DDE L
Sbjct: 207  KPAVHQAFLNFVPSKMSEVDFWNKYFKAEYIHSTKNTIAAAAEAAEDEDLAVFLKDDEIL 266

Query: 182  VNEARCKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINRH 361
             NEAR K+R+VDP +DM  +  DDY+HL  HG  +D  +E  +      +RTL++D+NR 
Sbjct: 267  ENEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKETAEAQNTFYRRTLLQDLNRQ 326

Query: 362  AAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIED 541
            + VVLEG+ L D D  + RTVAE L R +Q++        D + +E  ++   +M++IED
Sbjct: 327  SEVVLEGKTL-DMDMEHPRTVAEVLARRKQES--------DGVIEEERRNRISKMTQIED 377

Query: 542  LQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAE---HFNPDEIYGSLAYAL 712
            LQA     +A LCI+D R YF SQQ + + +  D    GK +   +   +E YGSL  ++
Sbjct: 378  LQAQDDHRFAPLCIKDPRDYFDSQQVNALKSLDDS-LAGKEQIRCNLGSEEAYGSLRESI 436

Query: 713  LGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQEQDKLREQW 892
              I+  GL DP+L+ E A K  N L++ ISSTK H GK +Q+ V   LP   ++KL + W
Sbjct: 437  SKIKAIGLMDPLLSPEVAFKVLNGLTKNISSTKSHLGKSSQESVLDILPNTTKEKLLDHW 496

Query: 893  KTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIHP 1072
               QE+L  FW+   V +  + NK +R+KDA++Q Y  L+  K S K + RH++SL++HP
Sbjct: 497  VCSQELLRHFWSSYPVTTQNLVNKTKRMKDAISQIYSKLEEIKVSAKSDLRHQVSLVVHP 556

Query: 1073 MLQALDAAFENNEVDSRKRSSK 1138
            M QALDAA  + + D RKR+++
Sbjct: 557  MQQALDAALLHYDADVRKRNAR 578


>ref|XP_006660062.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Oryza brachyantha]
          Length = 621

 Score =  280 bits (716), Expect = 1e-72
 Identities = 161/391 (41%), Positives = 237/391 (60%), Gaps = 4/391 (1%)
 Frame = +2

Query: 2    EKPAVRRAYLMNVPFKMKEIEFWNKYCRSEYLYRTDNXXXXXXXXXXXXXXXQFL-DDES 178
            EKPAV RA+L  VP KM E +FW KY R+EYL RT N                FL +D+ 
Sbjct: 237  EKPAVHRAFLNFVPKKMSEKDFWTKYFRAEYLLRTKNTVAAAAEAAEDEELAVFLKNDDI 296

Query: 179  LVNEARCKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 358
            L  EAR KI++VDP +DM  +  DDY HL  HG  +D  +E I+ D   ++RTL +D+NR
Sbjct: 297  LAKEARLKIKRVDPTLDMEADAGDDYIHLPDHGIIRDGSKETIENDGELARRTLSQDLNR 356

Query: 359  HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIE 538
            HAAVVLEG++ SD +  +T+TVAEAL R++++    + +  D+ S ER       M++IE
Sbjct: 357  HAAVVLEGRS-SDVELTDTKTVAEALARSKREPPPSSIS--DDTSHERLVK-VARMTEIE 412

Query: 539  DLQATQTDPYASLCIRDHRKYFSSQQASPMHA---QSDRRYLGKAEHFNPDEIYGSLAYA 709
            DLQA ++ PYA LCI+D R+YF SQQA+ + +    +D R+       +  + +  L   
Sbjct: 413  DLQAPRSVPYAPLCIKDPREYFDSQQANALRSLGGNNDGRHARNCR-LSAHDAFDHLLGQ 471

Query: 710  LLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQEQDKLREQ 889
            +  I+ +GL  P++ ++ A K  N L+  IS T+  N K  Q  +   +P+  +D+L + 
Sbjct: 472  ISSIKVNGLNYPVVQSDVAFKVLNELNDGISRTRRLNLKNPQDSLLGQIPRHTRDELMDH 531

Query: 890  WKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIH 1069
            W  IQE+L  FW+   + ++ + NK++R+KDAM Q Y  LQ+ K S + + RHEIS L+ 
Sbjct: 532  WTAIQELLRHFWSSYPITTSVLYNKVQRIKDAMTQIYQKLQNIKESAQPDVRHEISQLVK 591

Query: 1070 PMLQALDAAFENNEVDSRKRSSKISEKAAGF 1162
            PM QALDAAF N+E++ +++SSK   K  GF
Sbjct: 592  PMTQALDAAF-NHELEQQQKSSKSGNKPNGF 621


>ref|XP_004972829.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like isoform X1 [Setaria italica]
          Length = 600

 Score =  280 bits (716), Expect = 1e-72
 Identities = 161/391 (41%), Positives = 242/391 (61%), Gaps = 4/391 (1%)
 Frame = +2

Query: 2    EKPAVRRAYLMNVPFKMKEIEFWNKYCRSEYLYRTDNXXXXXXXXXXXXXXXQFL-DDES 178
            EKPAVRRA+L  VP KM ++EFW KYCR+EYL RT N                FL +D+ 
Sbjct: 216  EKPAVRRAFLDFVPKKMTDLEFWRKYCRAEYLLRTKNTAAAAAEAAEDEELAVFLKNDDI 275

Query: 179  LVNEARCKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 358
            LV EA+ KI++VDP +DM  +  DDY HL  HG  +D  +E +D D+  ++RTL +++NR
Sbjct: 276  LVKEAKLKIKQVDPTLDMEADAGDDYIHLPDHGILRDGSKETVDNDSEFARRTLSQELNR 335

Query: 359  HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIE 538
            HAAVVLEG A SD +  + ++VAEAL R++++    +A  VD+ S ER       M++IE
Sbjct: 336  HAAVVLEGIA-SDVELTDAKSVAEALARSKKEPPSTSA--VDDTSHERLLK-VARMTEIE 391

Query: 539  DLQATQTDPYASLCIRDHRKYFSSQQASPMH---AQSDRRYLGKAEHFNPDEIYGSLAYA 709
            DLQA ++ PYA LCI+D R+YF SQQA+ +    A +D R        + +E +  L   
Sbjct: 392  DLQAPRSLPYAPLCIKDPREYFDSQQANALRSLGASNDGRKSRNCS-LSIEEAFHHLTDQ 450

Query: 710  LLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQEQDKLREQ 889
            +  I+ +     ++ ++ AVK  N L++ IS ++  N K  Q+ +   +P+  +D+L + 
Sbjct: 451  ISSIKVNKSNCTVIQSDMAVKVLNELNEGISRSRRLNLKNPQEGLLGRVPQHTRDELMDH 510

Query: 890  WKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIH 1069
            W  IQE+L  FW+   + ST + NK++R+KDAM Q Y  LQ+ K S + + RHEIS L+ 
Sbjct: 511  WTAIQELLRHFWSSYPITSTVLYNKVQRVKDAMTQIYQKLQAIKESAQPDVRHEISRLVK 570

Query: 1070 PMLQALDAAFENNEVDSRKRSSKISEKAAGF 1162
            PM QALDAAF +++++ +++S+K   K+ GF
Sbjct: 571  PMTQALDAAF-SHDLEQQQKSAKAGNKSNGF 600


>ref|XP_006352543.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Solanum tuberosum]
          Length = 599

 Score =  279 bits (714), Expect = 2e-72
 Identities = 170/391 (43%), Positives = 229/391 (58%), Gaps = 4/391 (1%)
 Frame = +2

Query: 2    EKPAVRRAYLMNVPFKMKEIEFWNKYCRSEYLYRTDNXXXXXXXXXXXXXXXQFL-DDES 178
            EKPAVR+AYL  VP KM E EFW KY R+EYL+ T N                FL  D+ 
Sbjct: 212  EKPAVRQAYLKFVPGKMSEKEFWTKYSRAEYLHSTKNIVAAAAEAAEDEELAVFLKQDDM 271

Query: 179  LVNEARCKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 358
            LV+EAR KIR+VDP +DM  +  DDY HL  HG  Q   +E ++      KR+  + +N+
Sbjct: 272  LVSEARRKIRRVDPTLDMEADEGDDYMHLPDHGLPQGETKEILEPQYEPFKRSFSQYLNQ 331

Query: 359  HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVD-NLSDERCKDGFHEMSKI 535
            HAAVVL G+ + D + G+TR+VAEA  RT Q  AE A    D N   ER K     +++I
Sbjct: 332  HAAVVLRGRVI-DVELGDTRSVAEAFTRTYQ--AEQATEVSDENAYRERVKK-VSRVAEI 387

Query: 536  EDLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAEHFN--PDEIYGSLAYA 709
            EDLQ  Q  P A L I+D R YF SQQA+ + A  D     +   F+   +E + SL  +
Sbjct: 388  EDLQGPQDPPVALLSIKDPRDYFDSQQANAIKALGDAETGIRQLKFSVSKEEAFCSLKDS 447

Query: 710  LLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQEQDKLREQ 889
            +  I   GL +PI++ E A+K  N LSQ ISSTKY+ GK   + V   LP   +++L   
Sbjct: 448  ISEINSQGLIEPIISPEVALKVFNGLSQNISSTKYYLGKNPHESVLDQLPSATKNELLLH 507

Query: 890  WKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIH 1069
            W +IQE+L  FW+   + + +   K+ RLKDAM+Q Y  LQ  K S + + RH++SLL+ 
Sbjct: 508  WTSIQELLKHFWSSYPITTKYFYAKVTRLKDAMSQIYPKLQEIKESVQSDVRHQVSLLVQ 567

Query: 1070 PMLQALDAAFENNEVDSRKRSSKISEKAAGF 1162
            PMLQALDAAF + + D +KRS+K  E+  GF
Sbjct: 568  PMLQALDAAFAHYDADIQKRSAKSGERPNGF 598


>ref|XP_004248296.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Solanum lycopersicum]
          Length = 599

 Score =  279 bits (714), Expect = 2e-72
 Identities = 169/391 (43%), Positives = 230/391 (58%), Gaps = 4/391 (1%)
 Frame = +2

Query: 2    EKPAVRRAYLMNVPFKMKEIEFWNKYCRSEYLYRTDNXXXXXXXXXXXXXXXQFL-DDES 178
            EKPAVR+AYL  VP KM E EFW KY R+EYL+ T N                FL  D+ 
Sbjct: 212  EKPAVRQAYLKFVPGKMSEKEFWTKYSRAEYLHSTKNIVAAAAEAAEDEELAVFLKQDDM 271

Query: 179  LVNEARCKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 358
            LV+EAR KIR+VDP +DM  +  DDY HL  HG  Q   +E ++      KR+  + +N+
Sbjct: 272  LVSEARRKIRRVDPTLDMEADEGDDYMHLPDHGLPQGETKEILEPQYEPFKRSFSQYLNQ 331

Query: 359  HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVD-NLSDERCKDGFHEMSKI 535
            HAAVVL+G+ + D + G+TR+VAEA  RT Q  AE A    D N   ER K     +++I
Sbjct: 332  HAAVVLQGRVI-DVELGDTRSVAEAFTRTNQ--AEQATEVSDENAYRERVKK-VSRVAEI 387

Query: 536  EDLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAEHF--NPDEIYGSLAYA 709
            EDLQ  +  P A L I+D R YF SQQA+ + A  D     +   F  + +E + SL  +
Sbjct: 388  EDLQGPRDPPVALLSIKDPRDYFDSQQANAIKALGDAETGIRQLKFRVSKEEAFCSLKDS 447

Query: 710  LLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQEQDKLREQ 889
            +  I   GL +PI++ E A+K  N LSQ ISSTKYH GK   + V   LP   +++L   
Sbjct: 448  ISEINSQGLIEPIISPEVALKVFNLLSQNISSTKYHLGKNPHESVLDQLPSATKNELLLH 507

Query: 890  WKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIH 1069
            W +IQE+L  FW+   + + +   K+ RLKDAM+Q Y  LQ  K S + + RH++SLL+ 
Sbjct: 508  WTSIQELLKHFWSSYPITTKYFYAKVTRLKDAMSQIYPKLQEIKESVQSDVRHQVSLLVQ 567

Query: 1070 PMLQALDAAFENNEVDSRKRSSKISEKAAGF 1162
            PMLQALDAAF + + D +KRS++  E+  GF
Sbjct: 568  PMLQALDAAFAHYDADLQKRSARSGERPNGF 598


>ref|XP_006589332.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-3-like isoform X1 [Glycine max]
            gi|571483735|ref|XP_006589333.1| PREDICTED: probable RNA
            polymerase II transcription factor B subunit 1-3-like
            isoform X2 [Glycine max]
          Length = 587

 Score =  278 bits (710), Expect = 6e-72
 Identities = 158/390 (40%), Positives = 233/390 (59%), Gaps = 4/390 (1%)
 Frame = +2

Query: 5    KPAVRRAYLMNVPFKMKEIEFWNKYCRSEYLYRTDNXXXXXXXXXXXXXXXQFL-DDESL 181
            KPAV +A+L  VP KM E++FWNKY ++EYL+ T N                FL DDE L
Sbjct: 208  KPAVHQAFLNFVPSKMNEVDFWNKYFKAEYLHSTKNAVAAAAEAAEDEDLAVFLKDDEIL 267

Query: 182  VNEARCKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINRH 361
              EAR K+R+VDP +DM  +  DDY+HL  HG  +D  ++  +   +  KRTL++D+NR 
Sbjct: 268  EIEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKDISEAQNSLYKRTLLQDLNRQ 327

Query: 362  AAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIED 541
             AVVLEG+ L D +  + RTVAE L R +Q+         D + DE  ++   +M+ IED
Sbjct: 328  GAVVLEGKTL-DMEMEHPRTVAEILARRKQE--------CDGVVDEERRNRISKMTPIED 378

Query: 542  LQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAE---HFNPDEIYGSLAYAL 712
            LQA    PYA LCI+D R YF SQQA+ +    D +  G  +       +E Y SL  ++
Sbjct: 379  LQAQDNHPYAPLCIKDPRDYFDSQQANAVKTLDDSQ-AGMEQMKCSLGSEEAYDSLRASI 437

Query: 713  LGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQEQDKLREQW 892
              I+ +GL+DP+ + + A+K  N L++ I+STKYH GK +Q+ V   LP   ++KL + W
Sbjct: 438  SKIKTTGLRDPLFSPDVALKVLNGLTKNITSTKYHLGKSSQESVLDILPNSTKEKLLDHW 497

Query: 893  KTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIHP 1072
               QE+L  FW+   V++  + +K RRLKD+++Q Y  L+  K S + + RH +SL++HP
Sbjct: 498  VCSQELLRHFWSSYPVSTQNLVSKTRRLKDSISQIYSKLEDIKVSAESDLRHHVSLVVHP 557

Query: 1073 MLQALDAAFENNEVDSRKRSSKISEKAAGF 1162
            M QAL+AA  + E D RKR+++  +K  G+
Sbjct: 558  MQQALNAALLHYEADIRKRNAR-GQKPNGY 586


>dbj|BAK04994.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  278 bits (710), Expect = 6e-72
 Identities = 161/391 (41%), Positives = 238/391 (60%), Gaps = 4/391 (1%)
 Frame = +2

Query: 2    EKPAVRRAYLMNVPFKMKEIEFWNKYCRSEYLYRTDNXXXXXXXXXXXXXXXQFL-DDES 178
            EKPAV RA+L  VP K+ E +FW KYCR+EYL RT N                FL +D+ 
Sbjct: 216  EKPAVHRAFLDYVPKKLSEKDFWTKYCRAEYLLRTKNTLAAKAEAAEDEELAMFLKNDDI 275

Query: 179  LVNEARCKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 358
            L  EA+ KI++VDP +DM  +  DDY HL  HG  +D  RE  D D+  ++RTL +D+NR
Sbjct: 276  LAKEAKLKIKRVDPTLDMEADAGDDYIHLPDHGILRDGSRETTDTDSELARRTLSQDLNR 335

Query: 359  HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIE 538
            HAAVVLEG++ +D +  +T+TVAEAL R++++    + A  D+ S ER       M++IE
Sbjct: 336  HAAVVLEGRS-ADIESTDTKTVAEALARSKKEPPPSSVA--DDASHERLVKAAR-MTEIE 391

Query: 539  DLQATQTDPYASLCIRDHRKYFSSQQAS---PMHAQSDRRYLGKAEHFNPDEIYGSLAYA 709
            DLQA ++ PYA LCI+D R+YF SQQA+   P+ +   R+   ++   + D+ +  L   
Sbjct: 392  DLQAPRSLPYALLCIKDPREYFDSQQANALRPLGSNDGRK--ARSCSLSTDDAFRHLMDQ 449

Query: 710  LLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQEQDKLREQ 889
            +  ++   +  P++ ++ A+K  N L++ IS ++  N K  Q  +   LP + +D+L + 
Sbjct: 450  ISSVK---MNCPVVQSDVALKVLNELNEGISRSRRLNLKNPQDSLLGRLPHRTRDELMDH 506

Query: 890  WKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIH 1069
            W  IQE+L  FW+   + +T + NK++RLK+AM Q Y  LQ  K S + + RHEIS L+ 
Sbjct: 507  WMAIQELLRHFWSSYPITTTVLCNKVQRLKEAMTQIYQKLQDIKESAQPDVRHEISQLVK 566

Query: 1070 PMLQALDAAFENNEVDSRKRSSKISEKAAGF 1162
            PM QALDAAF N+E D +++SSK   K  GF
Sbjct: 567  PMTQALDAAF-NHEHDQQQKSSKAGSKPNGF 596


>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
          Length = 735

 Score =  278 bits (710), Expect = 6e-72
 Identities = 164/389 (42%), Positives = 224/389 (57%), Gaps = 3/389 (0%)
 Frame = +2

Query: 2    EKPAVRRAYLMNVPFKMKEIEFWNKYCRSEYLYRTDNXXXXXXXXXXXXXXXQFLD-DES 178
            EKPAV +A+L  VP KM E +FWNKYCR+EYL+ T N                FL  D+ 
Sbjct: 258  EKPAVHQAFLNFVPNKMTEKDFWNKYCRAEYLHCTRNTVAAAAEAAEDEELAVFLKHDDI 317

Query: 179  LVNEARCKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 358
            L +EAR KIR+VDP +DM  +  DDY HL  HG  +D  +E ID    Q +RTL +D+NR
Sbjct: 318  LASEARRKIRRVDPTLDMEADQGDDYMHLPDHGIFRDGSKEIIDPQYEQYRRTLSQDLNR 377

Query: 359  HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIE 538
            HAAVVLEG+ + D +  +TRTVAEAL ++++   E A    D        +    M++IE
Sbjct: 378  HAAVVLEGRPI-DVELEDTRTVAEALAKSKR--VEAANEKSDGSVTRERLERISRMTEIE 434

Query: 539  DLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAEH--FNPDEIYGSLAYAL 712
            DLQA +  P+A+LCI+D R YF SQQA+ +    D     K      +  E YGSL   +
Sbjct: 435  DLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSSQEAYGSLRGFI 494

Query: 713  LGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQEQDKLREQW 892
              I+  GL DPI+  + A+K  N L+Q ISSTK+H GK  Q+ V   LP   +++L   W
Sbjct: 495  SEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKNPQESVLDRLPIITKEELLHHW 554

Query: 893  KTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIHP 1072
             +IQE+L  FW+   + +T++  K  RLKDAM+Q Y  LQ  K S + ++RH++SLL+ P
Sbjct: 555  TSIQELLRHFWSSYPITTTYLYTKASRLKDAMSQIYPKLQEIKESVQSDFRHQVSLLVQP 614

Query: 1073 MLQALDAAFENNEVDSRKRSSKISEKAAG 1159
            MLQ         E   R+R S+  E   G
Sbjct: 615  MLQ------RRRETLKRRRRSEPQEGPGG 637


>gb|ESW16172.1| hypothetical protein PHAVU_007G134900g [Phaseolus vulgaris]
          Length = 588

 Score =  277 bits (709), Expect = 7e-72
 Identities = 158/385 (41%), Positives = 232/385 (60%), Gaps = 4/385 (1%)
 Frame = +2

Query: 5    KPAVRRAYLMNVPFKMKEIEFWNKYCRSEYLYRTDNXXXXXXXXXXXXXXXQFL-DDESL 181
            KPAV +A+L  VP KM E++FWNKY ++EYL+ T N                FL DDE L
Sbjct: 208  KPAVHQAFLNFVPSKMNEVDFWNKYFKAEYLHSTKNAVAAAAEAAEDEDLAVFLKDDEIL 267

Query: 182  VNEARCKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINRH 361
              EAR K+R+VDP +DM  +  DDY+HL  HG  +D  +E  +   +  KRTL++D+NR 
Sbjct: 268  EIEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKEISEAQNSLYKRTLLQDLNRQ 327

Query: 362  AAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIED 541
             AVVLEG+ L D +  N RTVAE L R +Q++ EV       + DE  ++   +M+ IED
Sbjct: 328  GAVVLEGKTL-DMEMENPRTVAEILARRKQESDEV-------VGDEERRNRISKMTPIED 379

Query: 542  LQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAE---HFNPDEIYGSLAYAL 712
            LQ+     YA LCI+D R YF  QQA+ +    D +  G  +       +E YGSL  ++
Sbjct: 380  LQSQDDHRYAPLCIKDPRDYFDFQQANAVKTLDDSQP-GMEQMMCSLGSEEAYGSLRASI 438

Query: 713  LGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQEQDKLREQW 892
              I+ +GL+DP+ + E A+K  + L++ ISS+KYH GK +Q+ V   LP   ++KL + W
Sbjct: 439  SKIQTTGLRDPLFSPEVALKVLHGLTKNISSSKYHLGKTSQESVLDILPNTTKEKLLDHW 498

Query: 893  KTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIHP 1072
               QE+L  +W+   V +  + NK RRLKD+++Q Y  L+  K S + + RH++SL++HP
Sbjct: 499  VCSQELLRHYWSSYPVTTQNLVNKTRRLKDSISQIYSKLEEIKVSAQSDLRHQVSLVVHP 558

Query: 1073 MLQALDAAFENNEVDSRKRSSKISE 1147
            M QALDAA  + + D RKR+++ S+
Sbjct: 559  MQQALDAALLHYDADIRKRNARGSK 583


>ref|NP_175971.3| probable RNA polymerase II transcription factor B subunit 1-1
            [Arabidopsis thaliana]
            gi|122215373|sp|Q3ECP0.1|TFB1A_ARATH RecName:
            Full=Probable RNA polymerase II transcription factor B
            subunit 1-1; AltName: Full=General transcription and DNA
            repair factor IIH subunit TFB1-1; Short=AtTFB1-1;
            Short=TFIIH subunit TFB1-1 gi|110741140|dbj|BAE98663.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|332195172|gb|AEE33293.1| probable RNA polymerase II
            transcription factor B subunit 1-1 [Arabidopsis thaliana]
          Length = 591

 Score =  277 bits (708), Expect = 9e-72
 Identities = 153/388 (39%), Positives = 233/388 (60%), Gaps = 1/388 (0%)
 Frame = +2

Query: 2    EKPAVRRAYLMNVPFKMKEIEFWNKYCRSEYLYRTDNXXXXXXXXXXXXXXXQFLD-DES 178
            EKPAVR+A++  VP KM E +FW KY R+EYLY T N                FL  DE 
Sbjct: 210  EKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVFLKPDEI 269

Query: 179  LVNEARCKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 358
            L  E R KIR+VDP +DM  +  DDY+HL  HG  +D   + ++   +Q KR+L++D+NR
Sbjct: 270  LARETRHKIRRVDPTLDMEADQGDDYTHLMDHGIQRDGTMDVVEPQNDQFKRSLLQDLNR 329

Query: 359  HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIE 538
            HAAVVLEG+++ D +  +TR VAEAL R +Q +      T D  +++   +    ++ +E
Sbjct: 330  HAAVVLEGRSI-DVESEDTRIVAEALTRVKQVSKADGETTKD--ANQERLERMSRVAGME 386

Query: 539  DLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAEHFNPDEIYGSLAYALLG 718
            DLQA Q  P A L I+D R YF SQQ + ++     + L +  H    E YG L  ++L 
Sbjct: 387  DLQAPQNFPLAPLSIKDPRDYFESQQGNVLNVPRGAKGLKRNVH----EAYGLLKESILE 442

Query: 719  IRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQEQDKLREQWKT 898
            IR +GL DP++  E + +  ++L++ I++ K  NGK  ++     LPK  +D++   W +
Sbjct: 443  IRATGLSDPLIKPEVSFEVFSSLTRTIATAKNINGKNPRESFLDRLPKSTKDEVLHHWTS 502

Query: 899  IQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIHPML 1078
            IQE+L  FW+   + +T++  K+ +LKDAM+  Y  L++ K S + + RH++SLL+ PM 
Sbjct: 503  IQELLKHFWSSYPITTTYLHTKVGKLKDAMSNTYSKLEAMKESVQSDLRHQVSLLVRPMQ 562

Query: 1079 QALDAAFENNEVDSRKRSSKISEKAAGF 1162
            QALDAAF + EVD ++R++K  E+  G+
Sbjct: 563  QALDAAFHHYEVDLQRRTAKSGERPNGY 590


>ref|XP_003591640.1| General transcription factor IIH subunit [Medicago truncatula]
            gi|355480688|gb|AES61891.1| General transcription factor
            IIH subunit [Medicago truncatula]
          Length = 586

 Score =  276 bits (705), Expect = 2e-71
 Identities = 158/386 (40%), Positives = 231/386 (59%), Gaps = 4/386 (1%)
 Frame = +2

Query: 5    KPAVRRAYLMNVPFKMKEIEFWNKYCRSEYLYRTDNXXXXXXXXXXXXXXXQFL-DDESL 181
            KPAV +A+L  VP KM E++FWNKY ++EYL+ T N                FL DDE L
Sbjct: 208  KPAVHQAFLNFVPSKMSEVDFWNKYFKAEYLHSTKNAIAAAAEAAEDEDLAVFLKDDEIL 267

Query: 182  VNEARCKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINRH 361
             NEAR K+R+VDP +DM  +  DDY+HL  HG  +D  +E  +      +RTL++D+NR 
Sbjct: 268  ENEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKETSEAQNTLYRRTLLQDLNRQ 327

Query: 362  AAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIED 541
            + VVLEG+ L D D  + RT  EAL R + ++        D + +ER ++   +M++IED
Sbjct: 328  SEVVLEGKTL-DIDMEHPRTAVEALARRKHES--------DGVVEER-RNRISKMAQIED 377

Query: 542  LQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAE---HFNPDEIYGSLAYAL 712
            LQA    P+A LCI+D R YF SQQA+ +    D    GK +   +   +E YGSL  ++
Sbjct: 378  LQAQDDHPFAPLCIKDPRDYFDSQQANAVKTLDDS-LSGKEKIRCNLGSEEAYGSLRESI 436

Query: 713  LGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQEQDKLREQW 892
              I+  GL+DP+L+ E A K  + L++ ISSTK + GK +Q+ V   LP   ++KL + W
Sbjct: 437  SNIKTMGLRDPLLSHEVAFKVLSELTKNISSTKSNLGKSSQESVLDILPNTTKEKLLDHW 496

Query: 893  KTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIHP 1072
               QE+L  FW+   V    + +K RRLKDA++Q Y  L+  K S K + RH++SL++HP
Sbjct: 497  VCSQELLRHFWSSYPVTKQSLVDKARRLKDAISQIYSKLEEIKVSAKSDLRHQVSLVVHP 556

Query: 1073 MLQALDAAFENNEVDSRKRSSKISEK 1150
            M QALDAA  + + D  +R++K S++
Sbjct: 557  MQQALDAALLHYDADITRRNAKGSKR 582


>gb|ACG24327.1| BSD domain containing protein [Zea mays]
          Length = 600

 Score =  274 bits (701), Expect = 6e-71
 Identities = 157/390 (40%), Positives = 237/390 (60%), Gaps = 3/390 (0%)
 Frame = +2

Query: 2    EKPAVRRAYLMNVPFKMKEIEFWNKYCRSEYLYRTDNXXXXXXXXXXXXXXXQFL-DDES 178
            EKPAVRRAYL  VP KM E  FW KYCR+EYL RT N                FL +D+ 
Sbjct: 216  EKPAVRRAYLDFVPKKMSETRFWEKYCRAEYLVRTKNTAAATAEAAGNEELAIFLKNDDI 275

Query: 179  LVNEARCKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 358
            L  EA+ KI++VDP +DM  +  DDY HL  HG  +D  +E +D D+  ++RTL +D+NR
Sbjct: 276  LAKEAKLKIKRVDPTLDMEADTGDDYIHLPDHGIHRDGSKETVDADSELARRTLSQDLNR 335

Query: 359  HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIE 538
            HAAVVLEG++L D +  + +T+AEAL R++++    + + VD+ + ER       M++IE
Sbjct: 336  HAAVVLEGRSL-DVESSDPKTLAEALARSKKEPP--STSNVDDDNHERLMK-VARMTEIE 391

Query: 539  DLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAEH--FNPDEIYGSLAYAL 712
            DLQA ++  YA LCI+D R+YF SQQA+ + +        KA     + +E++  L   +
Sbjct: 392  DLQAPRSLLYAPLCIKDPREYFDSQQANALRSLGGSNGGRKAHSCSLSTEEVFHHLMDQM 451

Query: 713  LGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQEQDKLREQW 892
              ++ + L  PI+ ++ A+K  N L++ IS ++  N K  Q+ +   LP+  +D+L + W
Sbjct: 452  SSVKVNRLNCPIVQSDMALKVLNELNEGISRSRRLNLKNPQEGLLGQLPQHTRDELMDHW 511

Query: 893  KTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIHP 1072
              IQE+L  FW+   + S  + NK++R+K+AM Q Y  LQ  K   + + RHEIS L+ P
Sbjct: 512  TAIQELLRHFWSSYPITSAVLYNKVQRVKEAMTQIYQKLQLIKELAQPDVRHEISRLVKP 571

Query: 1073 MLQALDAAFENNEVDSRKRSSKISEKAAGF 1162
            M QALDAAF N++++ +++SSK   +  GF
Sbjct: 572  MTQALDAAF-NHDLEQQQKSSKAGNRHNGF 600


>ref|XP_002443866.1| hypothetical protein SORBIDRAFT_07g003540 [Sorghum bicolor]
            gi|241940216|gb|EES13361.1| hypothetical protein
            SORBIDRAFT_07g003540 [Sorghum bicolor]
          Length = 600

 Score =  274 bits (700), Expect = 8e-71
 Identities = 157/390 (40%), Positives = 236/390 (60%), Gaps = 3/390 (0%)
 Frame = +2

Query: 2    EKPAVRRAYLMNVPFKMKEIEFWNKYCRSEYLYRTDNXXXXXXXXXXXXXXXQFL-DDES 178
            EKPAVRRAYL  VP KM E  FW KYCR+EYL+RT N                FL +D+ 
Sbjct: 216  EKPAVRRAYLDYVPKKMVETRFWEKYCRAEYLFRTKNTAAATAEAAGDEELAIFLKNDDI 275

Query: 179  LVNEARCKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 358
            L  E   +I++VDP +DM  +  DDY HL  HG  +D  +E ID D+  ++RTL +D+NR
Sbjct: 276  LAKEFWLQIKRVDPTLDMEADTGDDYIHLPDHGIHRDGNKETIDADSELARRTLSQDLNR 335

Query: 359  HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIE 538
            HAAVVLEG++L D +  + +T+AEAL R+++   E  + ++D+ ++         M++IE
Sbjct: 336  HAAVVLEGRSL-DVESTDPKTLAEALARSKK---EPPSTSIDDDANHERLVKVARMTEIE 391

Query: 539  DLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAE--HFNPDEIYGSLAYAL 712
            DLQA ++ PYA LCI+D R+YF SQQA+ + +        KA     + +E +  L   +
Sbjct: 392  DLQAPRSLPYAPLCIKDPREYFDSQQANALRSLGGSNDGRKARTCSLSTEEAFHHLMDQM 451

Query: 713  LGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQEQDKLREQW 892
              I+ + L  PI+ ++ A+K  N L++ IS ++  N K  Q+ +   LP+  +D+L + W
Sbjct: 452  SSIKVNKLNCPIIQSDMALKVLNELNEGISRSRRLNLKNPQEGLLGQLPQHTRDELMDHW 511

Query: 893  KTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIHP 1072
              IQE+L  FW+   + S  + NK++R+K+AM Q Y  LQ  K S + + RHEIS L+ P
Sbjct: 512  TAIQELLRHFWSSYPITSAVLYNKVQRVKEAMTQIYQKLQLIKESAQPDVRHEISRLVKP 571

Query: 1073 MLQALDAAFENNEVDSRKRSSKISEKAAGF 1162
            M QALDAAF N++++ +++SSK   +  GF
Sbjct: 572  MTQALDAAF-NHDLEQQQKSSKTGNRHNGF 600