BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00014212
         (2017 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Popu...   734   0.0  
ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [A...   730   0.0  
ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Rici...   727   0.0  
gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]       725   0.0  
ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   724   0.0  
emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]       717   0.0  
gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobro...   715   0.0  
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   714   0.0  
ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   713   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   713   0.0  
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   712   0.0  
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   711   0.0  
gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]              709   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      709   0.0  
ref|XP_004978058.1| PREDICTED: probable RNA-dependent RNA polyme...   708   0.0  
gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus pe...   707   0.0  
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V...   707   0.0  
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       707   0.0  
gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]              707   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      706   0.0  

>ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Populus trichocarpa]
            gi|222868578|gb|EEF05709.1| hypothetical protein
            POPTR_0015s08500g [Populus trichocarpa]
          Length = 1110

 Score =  734 bits (1896), Expect = 0.0
 Identities = 371/677 (54%), Positives = 491/677 (72%), Gaps = 6/677 (0%)
 Frame = +2

Query: 5    EQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEH 184
            ++ I  +P+RT +Y RI++IL +G  I  KRFEFLAFS+SQLR NSVWMF+S+  + AE 
Sbjct: 425  QRGIFAKPFRTGIYHRILSILRDGFVIGAKRFEFLAFSASQLRSNSVWMFASNNGVKAED 484

Query: 185  IRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGI 364
            IRKWMG F+ IR+V+K AARMGQ FSSS  T +V   +V  I DIEVTT G+ YCFSDGI
Sbjct: 485  IRKWMGCFDKIRSVSKCAARMGQLFSSSLQTFVVPVQDVEIIPDIEVTTDGIDYCFSDGI 544

Query: 365  GKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRT 544
            GKIS   A+++A +CGL  TPSAFQIRY GYKGVVAVD  S+ KLSLR SMLKF+S+NR 
Sbjct: 545  GKISLSFAKQVAHKCGLSHTPSAFQIRYGGYKGVVAVDRNSFRKLSLRSSMLKFDSENRM 604

Query: 545  LDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLM 724
            L+V  WS+ +PCYLNREII LLSTLGV DE FQ+LQ+ ++ +  +ML N+E+A+D+L  +
Sbjct: 605  LNVTKWSESMPCYLNREIISLLSTLGVADEIFQALQQKQLYRLRKMLTNKESALDVLENL 664

Query: 725  SDRDSK-ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDE 901
            +  DSK IL++ML  G  P+ EP+L+ MLQA+ +  L EL+S+CRIFVP+G +LIGCLDE
Sbjct: 665  AWADSKNILVQMLLQGYEPNVEPYLSMMLQAYHENSLMELRSRCRIFVPKGRILIGCLDE 724

Query: 902  TRTLDYGEVFIQVSKTKIKGNYDEASSFEELE--THVIEGDVVVAKNPCLHPGDIRKLKA 1075
            +  LDYG+V+++++ TK +    + S F +++  T  I G+V V KNPCLHPGDIR L+A
Sbjct: 725  SGILDYGQVYVRITMTKAELQCCDQSFFRKVDESTSTIIGEVAVTKNPCLHPGDIRVLEA 784

Query: 1076 VNVPGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDY 1249
            V    L    +VDC +FPQ G RPHPNECSG DLDGD +F+SWD  L+P     E PMDY
Sbjct: 785  VYDVELEEKGLVDCIIFPQNGGRPHPNECSGGDLDGDQFFISWDEGLLP--CHTEAPMDY 842

Query: 1250 TGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLH 1429
             G     +DHNVT+EEIQ +FV+YM+ND+LG I+ AH+VHAD EP KARSEKCL+LA LH
Sbjct: 843  VGGRQRIMDHNVTLEEIQRFFVDYMINDTLGAISTAHLVHADCEPDKARSEKCLQLATLH 902

Query: 1430 AKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPQVL 1609
            + AVDFAKTGAPAEMPL L PRE+PDFME+  K MY S  +LGKLYRD +D   ++    
Sbjct: 903  SMAVDFAKTGAPAEMPLYLKPREFPDFMERAEKQMYISDGVLGKLYRDIHDSTRQERSNF 962

Query: 1610 MDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRM 1789
            M S+++ +  YD+  E +GF+D L  A ++K  Y  K++ LM YYG + E EI++GN+R 
Sbjct: 963  MWSKKIAEATYDQDLEVKGFEDFLGIASIYKEKYMEKMSTLMDYYGAKTEDEILTGNLRH 1022

Query: 1790 PSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSY 1969
                   + +K+ D KD+IL++++ L+ EA+ WF+ SC    ++  +ASAWYHVTYH +Y
Sbjct: 1023 RPTYLQRDNRKYGDVKDRILVSLKNLKKEAKEWFESSCN-PTEHQCMASAWYHVTYHPTY 1081

Query: 1970 W-SKGNLISFPWIRYDL 2017
            +  + N +SFPWI  D+
Sbjct: 1082 FHERMNCLSFPWIVGDI 1098


>ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [Amborella trichopoda]
            gi|548839203|gb|ERM99496.1| hypothetical protein
            AMTR_s00088p00026960 [Amborella trichopoda]
          Length = 1107

 Score =  730 bits (1885), Expect = 0.0
 Identities = 370/676 (54%), Positives = 485/676 (71%), Gaps = 5/676 (0%)
 Frame = +2

Query: 5    EQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEH 184
            E     +P+RTN+Y+RI+++L +GI + +KRFEFLAFS+SQLR N+VWMF+S++ ++ E 
Sbjct: 423  ESGFFAKPYRTNIYKRIVSVLRDGIVLGSKRFEFLAFSASQLRSNAVWMFASNENISVES 482

Query: 185  IRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGI 364
            IR+WMG F+++R +AK AARMGQ FSSS  T  V  HEV  I DIEVTT G++YCFSDGI
Sbjct: 483  IREWMGEFKNLRCIAKCAARMGQLFSSSTPTLSVPLHEVQVIPDIEVTTDGIEYCFSDGI 542

Query: 365  GKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRT 544
            GKIS   AR++A+RCGL   PSAFQIRY GYKGV+A+DPTS+HKL+LRPSM KFNS+N  
Sbjct: 543  GKISLAFARQVARRCGLKQPPSAFQIRYGGYKGVIAIDPTSFHKLALRPSMQKFNSNNTM 602

Query: 545  LDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLM 724
            L V  WS+ +PCYLNREII LLSTL + D  F+++Q+ ++   + ML   + A+++L  M
Sbjct: 603  LCVTKWSQSMPCYLNREIITLLSTLEIADHKFEAMQKQQMTLLDDMLTKRDVALNVLEDM 662

Query: 725  SDRDSK-ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDE 901
               D K +L +ML  GC PS+EP+L+ MLQA RD  LS+++SKCR+FV +G VL+GCLDE
Sbjct: 663  IVGDYKEVLTKMLLHGCDPSTEPYLSMMLQALRDHQLSDIRSKCRLFVSKGRVLLGCLDE 722

Query: 902  TRTLDYGEVFIQVSKTKIKGNYDEASSFEELE--THVIEGDVVVAKNPCLHPGDIRKLKA 1075
            + TL  GEVF++V+ TK +   D    FE ++  T V+ G VVV KNPCLHPGD+R L+A
Sbjct: 723  SGTLSQGEVFLRVTMTKAELENDGQPFFERIDETTSVVVGAVVVTKNPCLHPGDVRVLQA 782

Query: 1076 VNVPGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDY 1249
            V+   LV   MVDC VFPQ G RPHPNECSG DLDGDL+FV WD  L+P   +P   MDY
Sbjct: 783  VSGLELVDQGMVDCLVFPQNGERPHPNECSGGDLDGDLFFVCWDKDLIPTTNDP--AMDY 840

Query: 1250 TGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLH 1429
             GR    +DH VT+EEIQE+FV+YM+ND+LG I+NAH+V ADRE  KARS KC+ELA+LH
Sbjct: 841  LGRRPRIMDHEVTMEEIQEFFVDYMINDNLGAISNAHLVLADREKSKARSPKCIELAKLH 900

Query: 1430 AKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPQVL 1609
            + AVDFAKTGAPAEMP  L+ +EYPDFME+  K  Y S  ILGKLYR + +        L
Sbjct: 901  SMAVDFAKTGAPAEMPRSLMLKEYPDFMERGEKSTYASPGILGKLYRLAKEASNSQSFEL 960

Query: 1610 MDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRM 1789
            + S+ V    YD +   +GF++ ++ A  HK  Y  KL  LM YYG ++E+EI+SGNI  
Sbjct: 961  VSSKNVALPFYDTNLLAKGFEEFIELAVKHKEAYGQKLQELMDYYGAESESEILSGNISK 1020

Query: 1790 PSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSY 1969
             S     + +K+ + KD+IL+AV+ L+ EA+GWF  SC+  +++  LASAWYHVTY   +
Sbjct: 1021 KSGYLQRDNRKYGEVKDRILIAVKNLQREAQGWFKSSCE-PNQSSKLASAWYHVTYRPDH 1079

Query: 1970 WSKGNLISFPWIRYDL 2017
            +SK N  SFPWI  D+
Sbjct: 1080 FSKVNFFSFPWILADV 1095


>ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 983

 Score =  727 bits (1877), Expect = 0.0
 Identities = 362/677 (53%), Positives = 488/677 (72%), Gaps = 6/677 (0%)
 Frame = +2

Query: 5    EQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEH 184
            ++ I  +P+RT +Y RI++IL +GI I  K+FEFLAFS+SQLR NSVWMF+S+    AE 
Sbjct: 280  QRGIFAKPFRTGIYHRILSILRDGIVIGAKKFEFLAFSASQLRSNSVWMFASNDKKKAEE 339

Query: 185  IRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGI 364
            IR+WMG F  I +++K AARMGQ FSSS  T IV   ++  I DIEVT+ G+ YCFSDGI
Sbjct: 340  IREWMGCFNKIHSISKCAARMGQLFSSSKQTFIVSPQDMEIIPDIEVTSDGINYCFSDGI 399

Query: 365  GKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRT 544
            GKIS   AR++A++CGL+ TPSAFQIRY GYKGV+AVD  S+ KLSLR SM KF S+NR 
Sbjct: 400  GKISLSFARQVAQKCGLNRTPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMCKFESENRM 459

Query: 545  LDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLM 724
            L+V  WS+ +PCYLNREII LL+TLGV DE F+ LQ+ ++Q  N+ML N E+A+++L  +
Sbjct: 460  LNVTKWSESMPCYLNREIITLLTTLGVKDEIFEGLQQQQLQLLNRMLTNRESALNVLENL 519

Query: 725  SDRDSK-ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDE 901
            +  + K ILI+ML  G  P+ EP+L+ MLQA+ +  L EL+S+CRIFVP+G +LIGCLDE
Sbjct: 520  AWANCKNILIKMLVQGYEPNVEPYLSMMLQAYHENLLVELRSRCRIFVPKGRILIGCLDE 579

Query: 902  TRTLDYGEVFIQVSKTKIKGNYDEASSFEELE--THVIEGDVVVAKNPCLHPGDIRKLKA 1075
            TR LDYG+V+++++ TK +    + +SF  ++  T V+ G V+V KNPCLHPGDIR L+A
Sbjct: 580  TRILDYGQVYVRITMTKAELQDADQASFHRVDETTAVVTGKVIVTKNPCLHPGDIRVLEA 639

Query: 1076 VNVPGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDY 1249
            V    L    +VDC +FPQKG RPHPNECSG DLDGD +F+SWD  L+P   E E PMDY
Sbjct: 640  VYEVELEEKGLVDCILFPQKGERPHPNECSGGDLDGDQFFISWDKGLIP--GETESPMDY 697

Query: 1250 TGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLH 1429
             GR   ++DH+VT+EEIQ++F++YM+ND+LG I+ AH+VHADREP KARS KCL+LA LH
Sbjct: 698  QGRRPRKMDHDVTLEEIQKFFIDYMINDTLGAISTAHLVHADREPDKARSSKCLQLAELH 757

Query: 1430 AKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPQVL 1609
            + AVDFAKTGAPAEMP  L P+E+PDFME+  K MY S  +LGKLYR + D   +     
Sbjct: 758  SMAVDFAKTGAPAEMPKALKPKEFPDFMERIDKKMYISGGVLGKLYRGTLDSTRQQRSKF 817

Query: 1610 MDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRM 1789
            + +  + +  YD   E +GF++ ++ A  HK  Y  KL+ LM YY  + E EI++GN++ 
Sbjct: 818  VWTENIAEATYDHDLEVKGFEEFVEIAISHKDMYVEKLSGLMDYYEAKKEDEILTGNLQN 877

Query: 1790 PSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSY 1969
             +     + +++ D KD+IL++V++L+ EA+ WF+  C+   K   LASAWYHVTYH SY
Sbjct: 878  KAMYLQRDNRRYGDTKDRILISVKSLQKEAKEWFESCCQAKEKQ-RLASAWYHVTYHPSY 936

Query: 1970 WSKG-NLISFPWIRYDL 2017
            + +G   +SFPWI  D+
Sbjct: 937  FQEGITCLSFPWIVADI 953


>gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]
          Length = 1115

 Score =  725 bits (1872), Expect = 0.0
 Identities = 359/677 (53%), Positives = 491/677 (72%), Gaps = 6/677 (0%)
 Frame = +2

Query: 5    EQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEH 184
            EQ I  +P+RT +Y+RI++IL NGI I  KR+EFLAFS+SQLR ++VWMF+S+  + AE 
Sbjct: 428  EQGIFAKPYRTGIYDRILSILRNGILIGAKRYEFLAFSASQLRSSAVWMFASNDNVKAED 487

Query: 185  IRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGI 364
            IR+WMG F  IR+V+K AARMGQ FSSS  T IV   ++  I D+EVTT G+ YCFSDGI
Sbjct: 488  IREWMGCFNKIRSVSKCAARMGQLFSSSRQTLIVPTQDLEIIPDVEVTTDGIDYCFSDGI 547

Query: 365  GKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRT 544
            GKISS  AR++A++CGL  TPSAFQIRY GYKGV+AV+ +S+ KLSLR SMLKF S NR 
Sbjct: 548  GKISSSFARQVAQKCGLKETPSAFQIRYGGYKGVIAVNRSSFRKLSLRSSMLKFESSNRM 607

Query: 545  LDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLM 724
            L+V  WS  +PCYLNREI+ LLS+LGV DESF +L R+++    +M  N E A+++L  +
Sbjct: 608  LNVTKWSGSMPCYLNREIVSLLSSLGVKDESFLALLREQLLLLGKMRTNREAALNVLENL 667

Query: 725  SDRD-SKILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDE 901
            +  D S IL++ML  G  P++EP+L+ M+Q++ +  LS+LK++CRIFVP+G VLIGCLDE
Sbjct: 668  NGSDSSNILVKMLLQGYEPNAEPYLSMMIQSYYENQLSDLKTRCRIFVPKGKVLIGCLDE 727

Query: 902  TRTLDYGEVFIQVSKTKIKGNYDEASSFEEL--ETHVIEGDVVVAKNPCLHPGDIRKLKA 1075
            T  L+YG+V+++++  K +      S F ++  ET ++ G VVV KNPCLHPGD+R L+A
Sbjct: 728  TGILEYGQVYVRLTMKKAELEAGNQSFFRKVDDETSIVVGKVVVTKNPCLHPGDVRVLEA 787

Query: 1076 VNVPGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDY 1249
            V    L    +VDC VFPQKG RPHPNECSG DLDGDL+F+SWD  L+PP+     PMDY
Sbjct: 788  VYDAKLEEEGLVDCLVFPQKGERPHPNECSGGDLDGDLFFISWDTNLIPPR--TTAPMDY 845

Query: 1250 TGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLH 1429
             GR    +DH+VT+EEIQ++FV+YM+ND+LG I+ AH++HADREP KA SE CL+LA LH
Sbjct: 846  IGRRPRIMDHDVTLEEIQKFFVDYMINDTLGGISTAHLIHADREPEKAFSENCLQLATLH 905

Query: 1430 AKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPQVL 1609
            + AVDFAKTGAPAEMP  L PR+YPDFME+  +PMY S   LGKLYR + +   +    L
Sbjct: 906  SMAVDFAKTGAPAEMPRALRPRDYPDFMERLDRPMYVSNGALGKLYRATVESESQGSSNL 965

Query: 1610 MDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRM 1789
            + S +  +  YD+  E  GF++ +  AE H+  Y  K+  +M YY +++E E+++GN+R 
Sbjct: 966  VWSEKTAEAAYDRDLEVNGFEEFIALAESHRDMYIDKMNGIMNYYELESEDEVLTGNLRK 1025

Query: 1790 PSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSY 1969
             +     + +++ + KD+IL+AV++L+ EA+GWF+ SC+   +   +ASAWYHVTYH +Y
Sbjct: 1026 RAAYLQRDNRRYFEVKDRILLAVKSLQREAKGWFEGSCEAMEQQ-KMASAWYHVTYHPNY 1084

Query: 1970 WSKG-NLISFPWIRYDL 2017
            + K  N +SFPWI+ D+
Sbjct: 1085 YQKSINCLSFPWIKGDI 1101


>ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Fragaria vesca subsp.
            vesca]
          Length = 1136

 Score =  724 bits (1869), Expect = 0.0
 Identities = 359/677 (53%), Positives = 492/677 (72%), Gaps = 6/677 (0%)
 Frame = +2

Query: 5    EQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEH 184
            EQ    +P+RT +Y+RI++IL +GI I +KRFEFLAFS+SQLR NSVWMF+S+  + AE 
Sbjct: 433  EQGFFAKPFRTGIYQRILSILRDGIVIGDKRFEFLAFSASQLRSNSVWMFASNDSVKAED 492

Query: 185  IRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGI 364
            IR WMG F  IR+V+K AARMGQ FSSS  T  V + +V  I DIE TT GV YCFSDGI
Sbjct: 493  IRDWMGCFNKIRSVSKCAARMGQLFSSSTQTLTVPQKDVELIPDIETTTDGVSYCFSDGI 552

Query: 365  GKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRT 544
            GKIS   AR++A++CGL+ TPSAFQIRY GYKGV+AVD  S+ KLSLR SMLKF+SDNR 
Sbjct: 553  GKISLSFARQVAQKCGLNDTPSAFQIRYGGYKGVIAVDRNSFRKLSLRSSMLKFDSDNRM 612

Query: 545  LDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLM 724
            L+V  WS  +PC+LNREII L+STLGV DE+F++LQ++++    +M ++   A+  L  +
Sbjct: 613  LNVTKWSSSMPCFLNREIITLMSTLGVEDEAFEALQQEQLDLLGRMRKDRNVALSSLEKL 672

Query: 725  SDRDS-KILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDE 901
            S  DS  IL+++L  G  P+ EP+L+ MLQA  + HL++LKS+CR++VP+G +L+GCLDE
Sbjct: 673  SGADSNNILVKLLLQGYEPNLEPYLSMMLQAHYEHHLADLKSRCRMYVPKGRILVGCLDE 732

Query: 902  TRTLDYGEVFIQVSKTKIKGNYDEASSFEELE--THVIEGDVVVAKNPCLHPGDIRKLKA 1075
            T TL+YG+V+++++ TK +      S F+ ++  T ++ G VVV KNPCLHPGDIR L+A
Sbjct: 733  TGTLNYGQVYLRITMTKAEQEMGHQSFFQRVDEATCIVTGKVVVTKNPCLHPGDIRVLEA 792

Query: 1076 VNVPGL--VHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDY 1249
            V   GL   +MVDC +FPQKG RPHPNECSG DLDGDL+F+SWD  L+PP   P  PMDY
Sbjct: 793  VYDVGLEEKNMVDCILFPQKGERPHPNECSGGDLDGDLFFISWDKSLIPPTTVP--PMDY 850

Query: 1250 TGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLH 1429
            + R    +DH+VT+EEIQ++FV+YM+ND+LG I+ AH+VH+D EP KA S+KCLELA LH
Sbjct: 851  SARRPRNMDHDVTLEEIQKFFVDYMINDNLGAISTAHLVHSDHEPEKAMSKKCLELADLH 910

Query: 1430 AKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPQVL 1609
            + AVDFAKTGAPAE+   L P+E+PDFME+  +PMY S   LGKLYR     + ++  ++
Sbjct: 911  SMAVDFAKTGAPAELSWILKPKEFPDFMERVERPMYISNGALGKLYRAIRSSVVQEQTIV 970

Query: 1610 MDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRM 1789
            + S++  +  YD+  E +GF+  L+ AE H+  Y  K+ +LM YY    E EI++GN+R 
Sbjct: 971  VWSQQRAEEAYDRELEVQGFESFLEMAESHRDKYIEKMRSLMNYYEATTEDEILTGNLRN 1030

Query: 1790 PSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSY 1969
             +     + +++ D KD+IL++++ L+ EA+GWF+ SCK+  +   LASAWYHVTY+ +Y
Sbjct: 1031 RAAYLQRDNRRYFDLKDRILLSLKTLQKEAKGWFESSCKVSEQQ-RLASAWYHVTYNLAY 1089

Query: 1970 WSKG-NLISFPWIRYDL 2017
            + +  N +SFPWI  D+
Sbjct: 1090 FQEDMNCLSFPWIVGDI 1106


>emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
          Length = 775

 Score =  717 bits (1851), Expect = 0.0
 Identities = 370/673 (54%), Positives = 475/673 (70%), Gaps = 12/673 (1%)
 Frame = +2

Query: 32   RTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFE 211
            RT++YERI++ L NG+ I  K+FEFLAFSSSQLR+NSVWMF+S   LTA  IR WMG+F+
Sbjct: 113  RTDIYERILSTLQNGLVIGAKKFEFLAFSSSQLRDNSVWMFASRPGLTAYDIRTWMGDFQ 172

Query: 212  DIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMAR 391
             IRNVAKYAAR+GQSF SS  T  V  HE+  I D+EV   G  Y FSDGIGKIS+  A 
Sbjct: 173  QIRNVAKYAARLGQSFGSSRETLSVGRHEIKYIPDVEV--HGTNYVFSDGIGKISADFAH 230

Query: 392  RIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSKP 571
            R+AK+CGL  TPSAFQIRY GYKGVVAVDP S  KLSLR SMLK+ S+N  LDVL WSK 
Sbjct: 231  RVAKKCGLQHTPSAFQIRYGGYKGVVAVDPYSPMKLSLRKSMLKYESNNTKLDVLGWSKY 290

Query: 572  LPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMSD-RDSKIL 748
             PCYLNR+++ L+STLGV DE F+  Q + V + + +L +   A + L LMS   ++ IL
Sbjct: 291  QPCYLNRQLVTLMSTLGVKDEVFKRKQNEAVAQLDAILHDSLKAQEALDLMSPGENTNIL 350

Query: 749  IEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGEV 928
             EML+ G  P +EPFL+ MLQ FR   L +L+++ RIF+P+G  ++GCLDE+RTL+YG+V
Sbjct: 351  KEMLNCGYLPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPKGRSMMGCLDESRTLEYGQV 410

Query: 929  FIQVSKTKIKGNYDEASSFEELET----HVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLV 1096
            F+Q +    +  Y+E+  F +  +     +++G+VVVAKNPCLHPGDIR LKAV+VP L 
Sbjct: 411  FVQFTGAGGRQFYEESHHFNDSGSANYNFILKGNVVVAKNPCLHPGDIRVLKAVDVPALH 470

Query: 1097 HMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLD 1276
            HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WDP L+PP++   +PMDYT  P+I+LD
Sbjct: 471  HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQV--QPMDYTPAPSIQLD 528

Query: 1277 HNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKT 1456
            H+VTIEE++EYF NYM+ND LG+IANAHVV ADREP  A S+ C+ELA+L + AVDF KT
Sbjct: 529  HDVTIEEVEEYFTNYMVNDGLGVIANAHVVFADREPNMAMSDPCIELAQLFSIAVDFPKT 588

Query: 1457 GAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPQVLMDSRRVCKI 1636
            G PAE+P +L P+EYPDFMEK  K  Y S  ++GKL+R+  D+  +   +   +R V + 
Sbjct: 589  GVPAEIPSQLRPKEYPDFMEKPDKTTYHSEKVIGKLFREVKDKTTQASSITTFTRDVARR 648

Query: 1637 NYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSQGTINEK 1816
            +YD   E +GF+D++ EA  +KS YD KL  LM YYG++ EAE +SG I M +  T + +
Sbjct: 649  SYDTDLEVDGFEDYIDEAFDYKSEYDKKLGNLMDYYGIKTEAETLSGGI-MKASKTFDRR 707

Query: 1817 KKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYW-------S 1975
            +      + I +AV +LR EAR WF     +     A ASAWYHV YH +YW        
Sbjct: 708  RD----AEAIGVAVRSLRKEARTWFKRRSDIDDL-LAKASAWYHVAYHPTYWGCYNEGLK 762

Query: 1976 KGNLISFPWIRYD 2014
            + + ISFPW  YD
Sbjct: 763  RDHFISFPWCVYD 775


>gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobroma cacao]
            gi|508773407|gb|EOY20663.1| RNA-dependent RNA polymerase
            2 isoform 1 [Theobroma cacao]
          Length = 1149

 Score =  715 bits (1845), Expect = 0.0
 Identities = 363/676 (53%), Positives = 492/676 (72%), Gaps = 8/676 (1%)
 Frame = +2

Query: 14   ILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRK 193
            I  +P+RT +Y RI+++L +GI I +KRFEFLAFS+SQLR NSVWMF+S+  +TAE +R+
Sbjct: 441  IFSKPFRTKIYHRILSVLQHGIVIGDKRFEFLAFSASQLRSNSVWMFASNDKVTAEDVRE 500

Query: 194  WMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKI 373
            WMG F+ IR+V+K AARMGQ FSSS  T +V   +V  I DIEVT+ G+ YCFSDGIGKI
Sbjct: 501  WMGCFKKIRSVSKCAARMGQLFSSSLPTLVVPVQDVKIIPDIEVTSDGINYCFSDGIGKI 560

Query: 374  SSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDV 553
            S   AR +A++CGL+ TPSAFQIRY GYKGVVAVD  S+ K+SLR SM KF S  R L+V
Sbjct: 561  SLPFAREVAQKCGLNDTPSAFQIRYGGYKGVVAVDRNSFRKMSLRGSMHKFESKIRMLNV 620

Query: 554  LNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMSDR 733
              WS+ +PC+LNREI+ LLSTLG+ DE+F++LQ++++    QML N E A+D+L  +   
Sbjct: 621  TKWSESMPCFLNREIVTLLSTLGIKDEAFETLQQEQLHLLGQMLTNREAALDVLQSLCGA 680

Query: 734  DSK-ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRT 910
            DS+ IL++ML  G  P+ EP+L+ ML A     LS+LK +CRI+VP+G VL+GCLDET T
Sbjct: 681  DSQNILVKMLLQGYEPNVEPYLSMMLLANHVSLLSDLKCRCRIYVPKGQVLVGCLDETAT 740

Query: 911  LDYGEVFIQVSKTKIKGNYDEASSFEELE--THVIEGDVVVAKNPCLHPGDIRKLKAVNV 1084
            L+YG+V++++S  K +  + + + F +++  T ++ G VVV KNPCLHPGD+R L+AV  
Sbjct: 741  LNYGQVYVRLSIKKAELEHADQNFFHKVDEKTAIVIGKVVVTKNPCLHPGDVRVLEAVYE 800

Query: 1085 PGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTG- 1255
              L    +VDC VFPQKG RPHPNECSG DLDGD +F+SWD  L+P   + + PMDYTG 
Sbjct: 801  AELEDKGLVDCLVFPQKGERPHPNECSGGDLDGDQFFISWDKDLIP--CQTDAPMDYTGS 858

Query: 1256 RPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAK 1435
            RP I +DH VT+EEIQ++FV+YM+ND+LG I+ AH+VHADREP KARSEKCLELA LH+ 
Sbjct: 859  RPRI-MDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPDKARSEKCLELATLHSM 917

Query: 1436 AVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPQVLMD 1615
            AVDFAKTGAPAEMP  L PRE+PDFM++  KPMY S  +LGKLYR + +   ++    + 
Sbjct: 918  AVDFAKTGAPAEMPRSLKPREFPDFMQRVDKPMYASLGVLGKLYRATINSTVQERSKFVW 977

Query: 1616 SRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPS 1795
            S+++ +  YD   E  GF+  L  A+ HK  Y+ K++ LM YY V++E EI++GN+R  +
Sbjct: 978  SKKMAEALYDHDLEVNGFEAFLSTAQTHKDMYEEKMSFLMNYYEVESEDEILTGNMRNKA 1037

Query: 1796 QGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYW- 1972
                 + +++ D KD+IL++++ L+ EAR  F+ SCK+  ++  LASAWYHVTYH +Y  
Sbjct: 1038 TFLQRDNRRYGDMKDRILLSMKNLQREARERFENSCKV-GEHQRLASAWYHVTYHPNYCQ 1096

Query: 1973 -SKGNLISFPWIRYDL 2017
             S  + +SFPWI  D+
Sbjct: 1097 ESMKSCLSFPWIVGDI 1112


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score =  714 bits (1844), Expect = 0.0
 Identities = 370/673 (54%), Positives = 470/673 (69%), Gaps = 12/673 (1%)
 Frame = +2

Query: 32   RTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFE 211
            RT++Y RI++ L NG  I +K+FEFLAFSSSQLR+NSVWMF+S   LTA  IR WMG F+
Sbjct: 421  RTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGGFQ 480

Query: 212  DIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMAR 391
             IRNVAKYAAR+GQSF SS  T  V  HEV  I D+  +  G  Y FSDGIGKIS+  AR
Sbjct: 481  QIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKISADFAR 540

Query: 392  RIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSKP 571
            R+A +CGL  TPS FQIRY GYKGVVAVDP S  KLSLR SMLK+ S+N  LDVL WSK 
Sbjct: 541  RVAVKCGLQYTPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDVLGWSKY 600

Query: 572  LPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMS-DRDSKIL 748
             PCYLNR+++ LLSTLGV D+ F+  Q + V + + +L +   A + L LMS   ++ IL
Sbjct: 601  QPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPGENTNIL 660

Query: 749  IEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGEV 928
             EML+ G  P +EPFL+ MLQ FR   L +L+++ RIF+P G  ++GCLDE+RTL+YG+V
Sbjct: 661  KEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQV 720

Query: 929  FIQVSKTKIKGNYDEASSFEELET----HVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLV 1096
            F+Q + T  +  Y+E+  F +  +     ++EG+VVVAKNPCLHPGDIR L+AV+VP L 
Sbjct: 721  FVQFTGTGRRQFYEESHPFNDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDVPALH 780

Query: 1097 HMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLD 1276
            HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WDP LVPP++   +PMDYT  P+ +LD
Sbjct: 781  HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQ--FQPMDYTPAPSTQLD 838

Query: 1277 HNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKT 1456
            H+VTIEE++EYF NY++NDSLGIIANAHVV ADREP  A S+ C +LA+L + AVDF KT
Sbjct: 839  HDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKT 898

Query: 1457 GAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPQVLMDSRRVCKI 1636
            G PAE+P +L P+EYPDFMEK  KP Y S  ++GKL++   D+  +   +   +  V + 
Sbjct: 899  GVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDVARK 958

Query: 1637 NYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSQGTINEK 1816
            +YD      GF+D++ EA  +KS YD+KL  LM YYG++ EAEI+SG I M +  T + +
Sbjct: 959  SYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGI-MKASKTFDRR 1017

Query: 1817 KKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYW-------S 1975
            K      D I +AV +LR EAR WF     +     A ASAWYHVTYH +YW        
Sbjct: 1018 KD----ADAIGVAVRSLRKEARTWFKRRSDIDDM-LAKASAWYHVTYHHTYWGFYNEGLK 1072

Query: 1976 KGNLISFPWIRYD 2014
            + + ISFPW  YD
Sbjct: 1073 RDHFISFPWCIYD 1085


>ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Citrus sinensis]
          Length = 1131

 Score =  713 bits (1841), Expect = 0.0
 Identities = 358/677 (52%), Positives = 486/677 (71%), Gaps = 6/677 (0%)
 Frame = +2

Query: 5    EQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEH 184
            ++ I  +P+RT +Y RI+ IL +GI I +K +EFLAFS+SQLR NSVWMF+S+  ++AE 
Sbjct: 446  QRGIFAKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAED 505

Query: 185  IRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGI 364
            +R+WMG F  I +V+K AARMGQ FSSS  T +V   +V  I D+EVT+ G  YCFSDGI
Sbjct: 506  VREWMGCFNKIHSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGI 565

Query: 365  GKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRT 544
            GKIS   AR++A++CGL  TPSAFQIRY GYKGV+AVD  S+ KLSLR SMLKF S NR 
Sbjct: 566  GKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRM 625

Query: 545  LDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLM 724
            L+V  WS+ +PC+LNREII LLSTLGV D+ F+++Q+ ++    +ML N E A+D+L  +
Sbjct: 626  LNVTKWSESMPCFLNREIISLLSTLGVKDDVFEAMQQQQLILLGKMLINREAALDVLQKL 685

Query: 725  SDRDSK-ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDE 901
            +  DSK IL++ML  G  P+ EP+L+ ML +  +  LS+LKS+CRI+VP+G +LIGC DE
Sbjct: 686  NGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDE 745

Query: 902  TRTLDYGEVFIQVSKTKIKGNYDEASSFEELE--THVIEGDVVVAKNPCLHPGDIRKLKA 1075
            T  L+YG+VF++V+ T+ +    + S F  ++  T +++G V+V KNPCLHPGD+R L+A
Sbjct: 746  TGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEA 805

Query: 1076 VNVPGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDY 1249
            V    L     VDC +FPQKG RPHPNECSG DLDGD++F+SWD  L+P + EP  PMDY
Sbjct: 806  VYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDNDLIPCETEP--PMDY 863

Query: 1250 TGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLH 1429
            TGR +  +DH+VT+EEI ++FV+YM+ND+LG I+ AH+VHADR+P KARS KCL LA LH
Sbjct: 864  TGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLH 923

Query: 1430 AKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPQVL 1609
            + AVDFAKTGAPAEMPL L P+E+PDFME+E KP Y S  +LGKLYR + D + +     
Sbjct: 924  SMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNA 983

Query: 1610 MDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRM 1789
            + S ++ + +YD   E +GF+  L  AE HK  Y+ ++ ALM YYG   E EI++GN+R 
Sbjct: 984  IWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRN 1043

Query: 1790 PSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSY 1969
             +     + +++ D KD+IL++ + L+ EA+ WF  SCK  +++  LASAWYHVTY  SY
Sbjct: 1044 RASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCK-ENEHPQLASAWYHVTYSPSY 1102

Query: 1970 W-SKGNLISFPWIRYDL 2017
               +  L+SFPWI  D+
Sbjct: 1103 CKERMALLSFPWIVGDI 1119


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  713 bits (1841), Expect = 0.0
 Identities = 371/677 (54%), Positives = 471/677 (69%), Gaps = 16/677 (2%)
 Frame = +2

Query: 32   RTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFE 211
            RT +Y RI++ L NGI I +K+FEFLAFSSSQLRENS WMF+S   LTA  IR WMG+F 
Sbjct: 431  RTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAADIRAWMGSFH 490

Query: 212  DIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMAR 391
             IRNVA+YAAR+GQSF SS  T  V  HE+  I DIEV+  G +Y FSDGIGKIS++ AR
Sbjct: 491  KIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSDGIGKISAEFAR 550

Query: 392  RIAKRCGLDP-TPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSK 568
            ++A +CG    TPSAFQIRYAGYKGVVAVDPTS  KLSLR SM K+ S+N  LDVL  SK
Sbjct: 551  KVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESENTKLDVLAHSK 610

Query: 569  PLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMSD-RDSKI 745
              PC+LNR++I LLSTLGVPD  F+  QR+ V + + ML +   A + L LMS   ++ I
Sbjct: 611  YQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEALELMSPGENTNI 670

Query: 746  LIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGE 925
            L EML  G  P +EPFL+ MLQ FR   L EL++K RIF+P G  ++GCLDETRTL++G+
Sbjct: 671  LKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQ 730

Query: 926  VFIQVSKTKIKGNYDEASSFEEL---ETHVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLV 1096
            VF++ S ++ +  YD +  F E    + ++I+G VVVAKNPCLHPGD+R LKAV+VP L 
Sbjct: 731  VFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLRILKAVDVPALH 790

Query: 1097 HMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLD 1276
            HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WDP L+P ++    PMDYT  P ++LD
Sbjct: 791  HMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQI--SPMDYTPEPPLQLD 848

Query: 1277 HNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKT 1456
            H+VTIEE++EYF NY++NDSLG+IANAH  HAD+E LKA SE C+ELAR  + AVDF KT
Sbjct: 849  HDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKFSIAVDFPKT 908

Query: 1457 GAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPQVLMDSRRVCKI 1636
            G PAE+P  L  REYPDFMEK  KP YES +++GKL+R+  D       +   +  V + 
Sbjct: 909  GVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDVARQ 968

Query: 1637 NYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSQGTINEK 1816
             YD   E +GF+D++ +A  +KS YD KL  LM+YYG++ EAE++SG+    S+    ++
Sbjct: 969  CYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMKMSKSFTKKR 1028

Query: 1817 KKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNF----ALASAWYHVTYHSSYW---- 1972
                   + I MAV +L+ EAR WF+E             A ASAWYHVTYH +YW    
Sbjct: 1029 D-----AEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYWGCYN 1083

Query: 1973 ---SKGNLISFPWIRYD 2014
               ++ + +SFPW  YD
Sbjct: 1084 EGMNRDHFLSFPWCVYD 1100


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  712 bits (1838), Expect = 0.0
 Identities = 370/677 (54%), Positives = 473/677 (69%), Gaps = 16/677 (2%)
 Frame = +2

Query: 32   RTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFE 211
            RT +Y RI++ L NGI I +++FEFLAFSSSQLRE+S WMF+S   LTA  IR+WMGNF 
Sbjct: 435  RTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFR 494

Query: 212  DIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMAR 391
            +IRNVAKYAAR+GQSFSSS  T  V   E+  I D+++     KY FSDGIGK+S++ AR
Sbjct: 495  EIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR 554

Query: 392  RIAKRCGL-DPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSK 568
            ++A +CGL D  PSAFQIRY GYKGVVA DPTS  KLSLR SM K+ S+   LDVL WSK
Sbjct: 555  KVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSK 614

Query: 569  PLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMSD-RDSKI 745
              PC+LNR++I LLSTLG+ DE F+  QR+ V++ + +L +   A + L LMS   ++ I
Sbjct: 615  YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI 674

Query: 746  LIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGE 925
            L E+L  G  P +EPFL+ MLQ FR   L EL++K RIF+P G  ++GCLDETRTL+YG+
Sbjct: 675  LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQ 734

Query: 926  VFIQVSKTKIKGNYDEASSFEELETH---VIEGDVVVAKNPCLHPGDIRKLKAVNVPGLV 1096
            VF+Q+S    +  + E+S F    +    +++G VVVAKNPCLHPGD+R LKAVNVP L 
Sbjct: 735  VFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH 794

Query: 1097 HMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLD 1276
            HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WD  L+PP+++P  PMDYT   +++LD
Sbjct: 795  HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLD 852

Query: 1277 HNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKT 1456
            H+V IE+++EYF NY++NDSLGIIANAH V ADREP KARSE CL+LA   + AVDF KT
Sbjct: 853  HDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEPCLQLAEKFSIAVDFPKT 912

Query: 1457 GAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPQVLMDSRRVCKI 1636
            G PAE+P  L  +EYPDFMEK  KP YES +++GKL+R   D       + + ++ V + 
Sbjct: 913  GVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARR 972

Query: 1637 NYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSQGTINEK 1816
            +YD   E +GF+DH+ +A  HK  YD KL  LM YYG++ EAEI++G+I   S       
Sbjct: 973  SYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMS------- 1025

Query: 1817 KKHSDRKD--KILMAVEALRTEARGWFDESCKLHHKN--FALASAWYHVTYHSSYW---- 1972
            K  + R+D   I MAV ALR EAR WF E      ++  +A ASAWYHVTYH  YW    
Sbjct: 1026 KSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYN 1085

Query: 1973 ---SKGNLISFPWIRYD 2014
               ++ + +SFPW  YD
Sbjct: 1086 HGMNRDHFLSFPWCVYD 1102


>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
            arietinum]
          Length = 1126

 Score =  711 bits (1835), Expect = 0.0
 Identities = 376/676 (55%), Positives = 470/676 (69%), Gaps = 14/676 (2%)
 Frame = +2

Query: 32   RTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFS-SSKYLTAEHIRKWMGNF 208
            RT VY RI++IL NGI I +K+FEFLAFSSSQLRENS+WMF+ ++  LTA+ IR WMG+F
Sbjct: 435  RTEVYNRILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFAPTATGLTAQFIRAWMGDF 494

Query: 209  EDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMA 388
              IRNVAKYAAR+GQSF SS  T  V  +E+  I D +V    ++Y FSDGIGKIS + A
Sbjct: 495  SQIRNVAKYAARLGQSFGSSTETLSVNRNEIEIIPDAQVKHDTIEYVFSDGIGKISLEFA 554

Query: 389  RRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSK 568
            RR+AK+CG D TPSAFQIRY GYKGVVAVDPTS  KLSLR SM K++SDN  LDVL  SK
Sbjct: 555  RRVAKKCGYDSTPSAFQIRYGGYKGVVAVDPTSSVKLSLRKSMYKYDSDNTKLDVLACSK 614

Query: 569  PLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMSDRD-SKI 745
              PCYLNR++I LLSTL V D  F+  Q++ V + N +L N   A ++L LMS  + + I
Sbjct: 615  YQPCYLNRQLITLLSTLKVEDSVFEKKQKEAVNQLNTILTNSLKAQEVLDLMSTGEITNI 674

Query: 746  LIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGE 925
            L EML  G  P+ EPFL+ MLQ FR   L EL+ K RIF+P+G  ++G LDETRTL+YGE
Sbjct: 675  LKEMLFCGYKPNVEPFLSMMLQTFRASKLLELRQKTRIFIPKGRAMMGVLDETRTLEYGE 734

Query: 926  VFIQVSKTKIKG-NYDEASSFEELETHVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLVHM 1102
            VF+Q S  +I   +Y  A+S       V+ G VVVAKNPCLHPGD+R LKAV+VP L HM
Sbjct: 735  VFVQYSNNRISSLSYGSANSL------VVTGKVVVAKNPCLHPGDVRVLKAVDVPALHHM 788

Query: 1103 VDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLDHN 1282
            VDC VFPQKG+RPHPNECSGSDLDGD+YFV WDP L+PP  E  EPM+Y     I L H+
Sbjct: 789  VDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPP--ETTEPMEYASVQPIVLYHD 846

Query: 1283 VTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKTGA 1462
            V IEE++EYF NY+LNDSLGIIANAH+V AD+EP KA++E C+ELA+L + AVDF KTG 
Sbjct: 847  VEIEEVEEYFTNYILNDSLGIIANAHIVFADKEPAKAKAEPCIELAKLFSIAVDFPKTGI 906

Query: 1463 PAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPQVLMDSRRVCKINY 1642
            PA +P  L  +EYPDFMEK  K  Y+S +++GKL+R+       D  +   +  V K +Y
Sbjct: 907  PAVIPPHLFAKEYPDFMEKPDKTTYKSNNVIGKLFREIQGIPSRDGSITSFTLEVAKKSY 966

Query: 1643 DKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSQGTINEKKK 1822
            D   E++GF D++ +A  HK+ YD KL  LM YYG++NE+EI+SGNI   S+ + N+++ 
Sbjct: 967  DPDMEFDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKNESEILSGNIMRMSK-SFNKRRD 1025

Query: 1823 HSDRKDKILMAVEALRTEARGWFDESCKLHHKN----FALASAWYHVTYHSSYWSKGN-- 1984
                 D I MAV +LR EAR WF++            +A ASAWY+VTYH SYW   N  
Sbjct: 1026 ----GDAINMAVRSLRKEARSWFNDDATGVDSGSVDAYAKASAWYYVTYHHSYWGSYNEG 1081

Query: 1985 -----LISFPWIRYDL 2017
                  +SFPW  Y L
Sbjct: 1082 MKRDHFLSFPWCVYHL 1097


>gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
          Length = 1147

 Score =  709 bits (1829), Expect = 0.0
 Identities = 353/674 (52%), Positives = 484/674 (71%), Gaps = 6/674 (0%)
 Frame = +2

Query: 14   ILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRK 193
            +  RP++T +Y+RI++IL NGI I +KRF+FLAFS+SQLR NSVWMF+S+  + AE IR+
Sbjct: 434  VFSRPFKTKIYDRILSILQNGIVIGDKRFKFLAFSASQLRSNSVWMFASNDEVKAEDIRE 493

Query: 194  WMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKI 373
            WMG F+ IR+++K A+RMGQ FSSS  T +V   +V  I+DIEV T G+ YCFSDGIGKI
Sbjct: 494  WMGCFKKIRSISKCASRMGQLFSSSMPTLVVPVQDVEIIDDIEVKTDGINYCFSDGIGKI 553

Query: 374  SSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDV 553
            S   AR++A++CGL+  PSAFQIRY GYKGVVAVD  S+ K+SLR SMLKF S  R L+V
Sbjct: 554  SLPFARQVAEKCGLNHIPSAFQIRYGGYKGVVAVDRNSFWKMSLRDSMLKFESKVRMLNV 613

Query: 554  LNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMSDR 733
              WS+ +PC+LNREI+ L STLG+ DE F+ +Q +++    +ML N E A+D L  +   
Sbjct: 614  TKWSESMPCFLNREIVTLFSTLGIKDEVFERMQEEQLCLLGKMLTNREAALDTLQSLGGV 673

Query: 734  DSK-ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRT 910
            +SK IL+EML     P+ +P+L+ MLQA  +  LS+LKS+CRIFVP+G +LIGCLDET T
Sbjct: 674  NSKNILVEMLQFD-EPNVQPYLSMMLQAHYENLLSDLKSRCRIFVPKGRILIGCLDETGT 732

Query: 911  LDYGEVFIQVSKTKIKGNYDEASSFEEL--ETHVIEGDVVVAKNPCLHPGDIRKLKAVNV 1084
            L+YG+V++ +   K +    + S F ++  ET ++ G VVV KNPCLHPGD+R L+AV  
Sbjct: 733  LNYGQVYLCIKMKKAELECADQSYFRKVDEETAIVIGKVVVTKNPCLHPGDVRVLEAVYE 792

Query: 1085 PGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGR 1258
            P L    +VDC VFP+KG RPHPNECSG DLDGD +F+SWD  L+P + EP  PMDYTGR
Sbjct: 793  PQLEEKGLVDCLVFPEKGERPHPNECSGGDLDGDQFFISWDKDLIPCQTEP--PMDYTGR 850

Query: 1259 PAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKA 1438
                +DH VT+EEIQ++FV+YM+ND+LG I+ AH+VHADREP KARSE CL LA LH+ A
Sbjct: 851  RPRIMDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPYKARSENCLALATLHSMA 910

Query: 1439 VDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPQVLMDS 1618
            VDFAKTGAPAEMP  L PRE+PDFM++  KPMY S+ +LGKLYR + +   +     + +
Sbjct: 911  VDFAKTGAPAEMPRALKPREFPDFMQRGNKPMYTSSGVLGKLYRATINSTVQIRSKFVWT 970

Query: 1619 RRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSQ 1798
            + + ++ YD   E  GF+  +  AE HK  Y+ +++ LM YY V+ E EI++GN+   +Q
Sbjct: 971  KEMAELAYDHDLEVNGFESLISVAETHKEMYEERMSLLMSYYDVEYEDEILTGNMYNKAQ 1030

Query: 1799 GTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYW-S 1975
              + + +++ + K++I+++V+ L+ EA+ WF  SC    ++  LASAWY+VTYH +Y+  
Sbjct: 1031 FLLRDNRRYGEMKERIVLSVKDLQREAKEWFKSSCSKADEHQKLASAWYYVTYHPNYFEE 1090

Query: 1976 KGNLISFPWIRYDL 2017
            + N +SFPWI  D+
Sbjct: 1091 RMNSLSFPWIVGDI 1104


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  709 bits (1829), Expect = 0.0
 Identities = 372/681 (54%), Positives = 471/681 (69%), Gaps = 13/681 (1%)
 Frame = +2

Query: 11   DILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIR 190
            ++  R  RT +Y+RI++ L NGI I NKRFEFLAFSSSQLRENS WMF+S K LTA  IR
Sbjct: 417  NVQARGRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIR 476

Query: 191  KWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGK 370
             WMGNF  IRNVAKYAAR+GQSFSSS  T  V + E++ I DIE+   G+KY FSDGIGK
Sbjct: 477  SWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSDGIGK 536

Query: 371  ISSKMARRIAKRCGLDP-TPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTL 547
            IS++ A+++A +C L   TPSAFQIR  G+KGVVA+DPTS  KLSLR SM K+ S+N  L
Sbjct: 537  ISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENTKL 596

Query: 548  DVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMS 727
            DVL WSK  PC+LNR++I LLSTLGVPD +F+  QR+ V + N +L +   A + L LMS
Sbjct: 597  DVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEALELMS 656

Query: 728  D-RDSKILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDET 904
               ++ IL EML  G  P +EPFL+ ML+ FR   L EL++K RIFV +G  ++GCLDET
Sbjct: 657  PGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDET 716

Query: 905  RTLDYGEVFIQVSKTKIKGNYDEASSFEELETHVIEGDVVVAKNPCLHPGDIRKLKAVNV 1084
            RTL+YG+VF+Q S ++ +  +            +++G V+VAKNPCLHPGD+R L+AVNV
Sbjct: 717  RTLNYGQVFVQFSGSRSERRF------------IVQGKVIVAKNPCLHPGDVRVLRAVNV 764

Query: 1085 PGLVHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPA 1264
            P L HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WDP L+P K+   +PMDY+    
Sbjct: 765  PDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQI--DPMDYSPAST 822

Query: 1265 IRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVD 1444
             +LDH VTIEEI+EYF NY++NDSLGII+NAH   ADREP KA S  CLELA+L + AVD
Sbjct: 823  TKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAKLFSIAVD 882

Query: 1445 FAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPQVLMDSRR 1624
            F KTG PAE+P  L  +EYPDFMEK  KP Y+S +++GKL+R+  +    +  +   +R 
Sbjct: 883  FPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKFLTRE 942

Query: 1625 VCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSQGT 1804
              +  YD   E EGF+D++ +A  HKS YD KL  LM YYGV+ EAEI+ G I   S+  
Sbjct: 943  KMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIMKMSRSF 1002

Query: 1805 INEKKKHSDRKDKILMAVEALRTEARGWFDE-SCKLHHK---NFALASAWYHVTYHSSYW 1972
              ++       + I MAV +LR EAR WF+E   +L  +    +A ASAWY+VTYH SYW
Sbjct: 1003 TKKRD-----AEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHPSYW 1057

Query: 1973 SKGN-------LISFPWIRYD 2014
             + N        +SFPW  YD
Sbjct: 1058 GQYNEGMNRDHFLSFPWCVYD 1078


>ref|XP_004978058.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Setaria
            italica]
          Length = 1130

 Score =  708 bits (1827), Expect = 0.0
 Identities = 367/677 (54%), Positives = 474/677 (70%), Gaps = 7/677 (1%)
 Frame = +2

Query: 5    EQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEH 184
            EQ     P +T++Y RI++IL  G  I  K++EFLAFS+SQLR NSVWMF+S+  L+AE 
Sbjct: 434  EQGFFSTPLKTDLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNDSLSAES 493

Query: 185  IRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGI 364
            IR+WMG+F DIR+V+K AARMGQ FSSS  T  V  ++V  I DIEVTT G KY FSDGI
Sbjct: 494  IRRWMGHFNDIRSVSKCAARMGQLFSSSRQTFEVSSYDVEVIPDIEVTTDGNKYIFSDGI 553

Query: 365  GKISSKMARRIAKRCGLDPT--PSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDN 538
            GKISS+ AR+IAK  GLDP   PSAFQIRY GYKGV+AVDPTS++ LSLRPSM KF S +
Sbjct: 554  GKISSRFARQIAKTIGLDPNNPPSAFQIRYGGYKGVIAVDPTSFYNLSLRPSMKKFESKS 613

Query: 539  RTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILH 718
              L++ NWSK  PCY+NREII LLSTLG+ DE F S+Q+D++ + ++ML N+E A+ +L 
Sbjct: 614  TMLNITNWSKSQPCYVNREIISLLSTLGIKDEIFLSMQQDDMHESDEMLTNKEVALSVLG 673

Query: 719  LMSDRDSKILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLD 898
             +   D+KI  EML  G  PSSEP+L  +L+A R   L++++++C+I V +G VLIGCLD
Sbjct: 674  KIGGADTKIAAEMLLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQKGRVLIGCLD 733

Query: 899  ETRTLDYGEVFIQVSKTKIKGNYDEASSF--EELETHVIEGDVVVAKNPCLHPGDIRKLK 1072
            ET  LDYG+V+I+++K + +  Y E   F  ++ +T VI G V ++KNPCLHPGD+R L+
Sbjct: 734  ETSKLDYGQVYIRITKNRKEQKYSEQPFFCNDDGKTAVIVGKVAISKNPCLHPGDVRVLE 793

Query: 1073 AVNVPGL--VHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMD 1246
            A+  PGL    +VDC VFPQ+G+RPHPNECSG DLDGDL+F++WD  L+P K   + PMD
Sbjct: 794  AIYDPGLDARGLVDCVVFPQRGDRPHPNECSGGDLDGDLFFITWDDKLIPEK--VDAPMD 851

Query: 1247 YTG-RPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELAR 1423
            YT  RP I +DH VT+EEIQ++FV+YM+ND+LG+I+ AH++HADR PLKARS +CL+LA 
Sbjct: 852  YTATRPRI-MDHVVTLEEIQKHFVSYMINDALGVISTAHLIHADRNPLKARSPECLQLAA 910

Query: 1424 LHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPQ 1603
            LH+ AVDFAKTGAPAEMP  L PRE+PDFME+  KPMY S  +LGKLYR +  R  E+ +
Sbjct: 911  LHSMAVDFAKTGAPAEMPRALRPREFPDFMERWEKPMYVSNGVLGKLYRSAL-RHAENAE 969

Query: 1604 VLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNI 1783
             L+     C   YD   E  GF D L  AE H   Y  KL  LM YY  + E EI++GNI
Sbjct: 970  ALLPEGPACS-EYDPDLECPGFHDFLDAAEEHYEAYAEKLGTLMTYYSAEREDEILTGNI 1028

Query: 1784 RMPSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHS 1963
            R        + K++ + KD+I+ AV+AL  E RGW     +       LASAWYHVTYH 
Sbjct: 1029 RNKLVYLRRDNKRYFEMKDRIIAAVDALHEEVRGWL--RARREEDASKLASAWYHVTYHP 1086

Query: 1964 SYWSKGNLISFPWIRYD 2014
                +    SFPW+  D
Sbjct: 1087 CRRGEKRFWSFPWLACD 1103


>gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus persica]
          Length = 1118

 Score =  707 bits (1825), Expect = 0.0
 Identities = 356/677 (52%), Positives = 482/677 (71%), Gaps = 6/677 (0%)
 Frame = +2

Query: 5    EQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEH 184
            +Q I  +P RT +Y R+++IL +GI I  KRFEFLAFS+SQLR +SVWMFSS+  + AE 
Sbjct: 431  QQGIFAKPHRTGIYHRMLSILRDGIVIGEKRFEFLAFSASQLRSSSVWMFSSNDNVKAED 490

Query: 185  IRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGI 364
            IR+WMG F  IR+++K AARMGQ FSSS  T +V   +V  I D+E ++ GV YCFSDGI
Sbjct: 491  IREWMGCFSKIRSISKCAARMGQLFSSSTQTLVVPAQDVEIIPDVETSSDGVTYCFSDGI 550

Query: 365  GKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRT 544
            GKIS   AR++A++CGLD TPSAFQIRY GYKGV+AVD  S+ KLSLR SMLKF S NR 
Sbjct: 551  GKISLSFARKVAQKCGLDQTPSAFQIRYGGYKGVIAVDCRSFRKLSLRSSMLKFESKNRM 610

Query: 545  LDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLM 724
            L+V  WS  +PCYLNREII LLSTLGV DE+F++LQ ++++   +M      A+++   +
Sbjct: 611  LNVTKWSDAMPCYLNREIISLLSTLGVKDETFEALQEEQLRLLGKMRTERGAALNVFERL 670

Query: 725  SDRDSK-ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDE 901
            +  DSK  L++ML  G  P++EP+L+ MLQA+ + HLS+LKS+CRIFVP+G VL+GCLDE
Sbjct: 671  NGADSKNTLVKMLLHGYEPNAEPYLSMMLQAYYENHLSDLKSRCRIFVPKGRVLVGCLDE 730

Query: 902  TRTLDYGEVFIQVSKTKIKGNYDEASSFEELE--THVIEGDVVVAKNPCLHPGDIRKLKA 1075
            T  LDYG+V+++++ TK +    + S F++++  T V+ G VVV KNPCLHPGD+R L A
Sbjct: 731  TGNLDYGQVYVRITMTKAEQEMGDQSFFQKVDETTLVVTGKVVVTKNPCLHPGDVRVLDA 790

Query: 1076 VN--VPGLVHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDY 1249
            V   V    +MVDC +FPQKG RPHPNECSG DLDGDL+F+SWD  LVP    P  PMDY
Sbjct: 791  VYDVVLEEKNMVDCLIFPQKGERPHPNECSGGDLDGDLFFISWDKDLVPSHTVP--PMDY 848

Query: 1250 TGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLH 1429
            + R    +DH VT+EEIQ++FV+YM+ND+LG I+ AH+VHAD EP KA + KCL+LA LH
Sbjct: 849  SARRPRIMDHTVTLEEIQKFFVDYMINDNLGAISTAHLVHADHEPDKALNPKCLQLADLH 908

Query: 1430 AKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPQVL 1609
            + AVDFAKTGAPAEM   L P+E+PDFME+  KPMY S   LGKLYR     + ++   L
Sbjct: 909  SMAVDFAKTGAPAEMSRTLKPKEFPDFMERVDKPMYISNGALGKLYRAVVGSVLQEKTNL 968

Query: 1610 MDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRM 1789
            + S ++ +  YD+  E +G +  L+ A+ H+  Y  K+  +M YYG   E EI++GN+R 
Sbjct: 969  VWSEQIAEAAYDQDLEVDGLESVLEVAKGHRDMYIEKMRTMMNYYGAVTEDEILTGNLRN 1028

Query: 1790 PSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSY 1969
             +     + +++ D KD+I ++++ L+ EA+G F+ SC +  ++  +ASAWYHVTYH SY
Sbjct: 1029 RAAYLQRDNRRYGDMKDRISLSLKNLQKEAKGLFESSCPV-SEHQRMASAWYHVTYHPSY 1087

Query: 1970 WSKG-NLISFPWIRYDL 2017
            + +  N +SFPWI  D+
Sbjct: 1088 FQQDMNCLSFPWIVGDI 1104


>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
            gi|297733815|emb|CBI15062.3| unnamed protein product
            [Vitis vinifera]
          Length = 1127

 Score =  707 bits (1825), Expect = 0.0
 Identities = 358/666 (53%), Positives = 478/666 (71%), Gaps = 6/666 (0%)
 Frame = +2

Query: 26   PWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGN 205
            P+RT +Y RI++IL  GI I  KRF+FLAFS+SQLR NSVWMF+S+  +  + IR+WMG 
Sbjct: 437  PFRTEIYHRILSILREGIVIGAKRFQFLAFSASQLRSNSVWMFASNDKVRVDDIREWMGC 496

Query: 206  FEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKM 385
            F+ IR+V+K AARMGQ FSSS  T  V   +V  I DIEVT+ G  YCFSDGIGKIS   
Sbjct: 497  FKKIRSVSKCAARMGQLFSSSVQTLPVPVQDVEVIPDIEVTSDGFGYCFSDGIGKISLSF 556

Query: 386  ARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWS 565
            A+++A++CGL  TPSAFQIRY GYKGV+AVD  S+ KLSLR SMLKF S NR L+V  WS
Sbjct: 557  AKQVAQKCGLHQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRSSMLKFESQNRMLNVTKWS 616

Query: 566  KPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMSDRDSK- 742
            +  PCYLNREI+ LLSTLGV DE+F++L  +++   ++ML N + A+D+L  M   D+K 
Sbjct: 617  ESTPCYLNREIVSLLSTLGVEDENFEALLNEQMHLLDKMLTNRQAALDVLESMGGIDNKN 676

Query: 743  ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYG 922
            IL +ML  G  P+ EP+L+ MLQA+R+  LS+++++CRIFVP+  VLIGCLDET  L+YG
Sbjct: 677  ILAKMLLQGYEPNVEPYLSMMLQAYRESQLSDIRTRCRIFVPKARVLIGCLDETGILNYG 736

Query: 923  EVFIQVSKTKIKGNYDEASSFEELE--THVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLV 1096
            +V+++V+ TK +      S F++++  T V+ G V+V KNPCLHPGDIR L AV    L 
Sbjct: 737  QVYVRVTMTKAEHKCRNQSFFQKVDDTTSVVIGKVIVTKNPCLHPGDIRVLDAVYEVELE 796

Query: 1097 H--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIR 1270
               +VDC +FPQKG RPHPNECSG DLDGD +F+ WD  L+P   + E PMDYT R    
Sbjct: 797  EKGLVDCILFPQKGERPHPNECSGGDLDGDQFFICWDEGLIP--SQTEAPMDYTSRRPRI 854

Query: 1271 LDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFA 1450
            +DH+VT+EEIQ++FV+YM+ND+LG+I+ AH+VHADREP KARS+KCLELA LH+ AVDFA
Sbjct: 855  MDHDVTLEEIQKFFVDYMINDTLGVISTAHLVHADREPEKARSKKCLELATLHSMAVDFA 914

Query: 1451 KTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPQVLMDSRRVC 1630
            KTGAPAEMP  L P+E+PDFME+  KPMY S   LGKLYR +      +    + S  + 
Sbjct: 915  KTGAPAEMPRVLKPKEFPDFMERVDKPMYISNGALGKLYRATIASRVNEKSSFVWSGTIP 974

Query: 1631 KINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSQGTIN 1810
               YD   E +GF+  L+ A+LHK  Y  K+A LM +YG ++E E+++GN+R        
Sbjct: 975  GAAYDHDLEVDGFETFLEIAKLHKEMYAEKMATLMNFYGAESEDEMLTGNLRNKLMYLQR 1034

Query: 1811 EKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYWSK-GNL 1987
            + ++ ++ KD+IL++V++L+ EA+ W   SCK  H++  +ASAWYHVTYHS++ S+  N 
Sbjct: 1035 DNRRFTEMKDRILISVKSLQKEAKEWLYGSCK-PHQHQKMASAWYHVTYHSTFSSQTPNF 1093

Query: 1988 ISFPWI 2005
            +SFPWI
Sbjct: 1094 LSFPWI 1099


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  707 bits (1825), Expect = 0.0
 Identities = 364/673 (54%), Positives = 467/673 (69%), Gaps = 12/673 (1%)
 Frame = +2

Query: 32   RTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFE 211
            RT++YERI++ L NG  I +KRFEFLAFSSSQLR+NSVWMF+S   LTA  IR WMG+F 
Sbjct: 420  RTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFR 479

Query: 212  DIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMAR 391
             IRNVAKYAAR+GQSF SS  T  V  HEV  I D+  +  G  Y FSDGIGKIS+  A 
Sbjct: 480  QIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNYIFSDGIGKISADFAH 539

Query: 392  RIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSKP 571
            R+  +CGL  TPS+FQIRY GYKGVVAVDP S  KLSLR SMLK+ S+N  LDVL WSK 
Sbjct: 540  RVTIKCGLQYTPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVLGWSKY 599

Query: 572  LPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMS-DRDSKIL 748
             PCYLNR+++ LLSTLGV D+  +  Q + V + + +L +   A + L LMS   ++ IL
Sbjct: 600  QPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGENTNIL 659

Query: 749  IEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGEV 928
             EML+ G  P +EPFL+ MLQ FR   L +L+++ RIF+P G  ++GCLDE+RTL+YG+V
Sbjct: 660  KEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLEYGQV 719

Query: 929  FIQVSKTKIKGNYDEASSFEELET----HVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLV 1096
            F+Q S    +  ++E+  F +  +     +++G+VVVAKNPCLHPGDIR L+AV+VP L 
Sbjct: 720  FVQFSGAGRRQFFEESHPFNDSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVPALH 779

Query: 1097 HMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLD 1276
            HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WDP L+PP++   + MDYT  P  +LD
Sbjct: 780  HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQ--VQSMDYTPAPTTQLD 837

Query: 1277 HNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKT 1456
            H+VTIEE++EYF NY++NDSLGIIANAHVV ADREP  A S+ C +LA+L + AVDF KT
Sbjct: 838  HDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKT 897

Query: 1457 GAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPQVLMDSRRVCKI 1636
            G PAE+P +L P+EYPDFMEK  KP Y S  ++GKL++   ++  +   +   +R V + 
Sbjct: 898  GVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDVARK 957

Query: 1637 NYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSQGTINEK 1816
            +YD     +GF+D++ EA  +KS YD+KL  LM YYG++ EAEI+SG I M +  T + +
Sbjct: 958  SYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGI-MKASKTFDRR 1016

Query: 1817 KKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYW-------S 1975
            K      + I +AV  LR EAR WF     +     A ASAWYHVTYH +YW        
Sbjct: 1017 KD----AEAIGVAVRCLRKEARAWFKRRSDIDDM-LAKASAWYHVTYHHTYWGLYNEGLK 1071

Query: 1976 KGNLISFPWIRYD 2014
            + + ISFPW  YD
Sbjct: 1072 RDHFISFPWCVYD 1084


>gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
          Length = 1147

 Score =  707 bits (1824), Expect = 0.0
 Identities = 354/674 (52%), Positives = 482/674 (71%), Gaps = 6/674 (0%)
 Frame = +2

Query: 14   ILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIRK 193
            +  RP++T +Y+RI+ +L NGI I +KRFEFLAFS+SQLR NSVWMF+S+  + AE IR+
Sbjct: 434  VFSRPFKTKIYDRILYVLQNGIVIGDKRFEFLAFSASQLRSNSVWMFASNDEVKAEDIRE 493

Query: 194  WMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGKI 373
            WMG F+ IR+++K A+RMGQ FSSS  T +V   +V  I+DIEV T G+ YCFSDGIGKI
Sbjct: 494  WMGCFKKIRSISKCASRMGQLFSSSMPTLVVPVQDVEIIDDIEVKTDGINYCFSDGIGKI 553

Query: 374  SSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTLDV 553
            S   AR++A++CGL+  PSAFQIRY GYKGVVAVD  S+ K+SLR SMLKF S  R L+V
Sbjct: 554  SLPFARQVAEKCGLNHIPSAFQIRYGGYKGVVAVDRNSFWKMSLRDSMLKFESKVRMLNV 613

Query: 554  LNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMSDR 733
              WS+ +PC+LNREI+ L STLG+ DE F+ +Q +++    +ML N E A+D L  +   
Sbjct: 614  TKWSESMPCFLNREIVTLFSTLGIKDEVFERMQEEQLCLLGKMLTNREAALDTLQSLGGV 673

Query: 734  DSK-ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDETRT 910
            +SK IL+EML     P+ +P+L+ MLQA  +  LS+LKS+CRIFVP+G +LIGCLDET T
Sbjct: 674  NSKNILVEMLQF-YEPNVQPYLSMMLQAHYENLLSDLKSRCRIFVPKGRILIGCLDETGT 732

Query: 911  LDYGEVFIQVSKTKIKGNYDEASSFEEL--ETHVIEGDVVVAKNPCLHPGDIRKLKAVNV 1084
            L+YG+V++ +   K +    + S F ++  ET ++ G VVV KNPCLHPGD+R L+AV  
Sbjct: 733  LNYGQVYLCIKMKKAELECADQSYFRKVDEETAIVIGKVVVTKNPCLHPGDVRVLEAVYE 792

Query: 1085 PGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGR 1258
            P L    +VDC VFPQKG RPHPNECSG DLDGD +F+SWD  L+P + EP  PMDYTGR
Sbjct: 793  PQLEEKGLVDCLVFPQKGERPHPNECSGGDLDGDQFFISWDKDLIPCQTEP--PMDYTGR 850

Query: 1259 PAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKA 1438
                +DH VT+EEIQ++FV+YM+ND+LG I+ AH+VHADREP KA SE CL LA LH+ A
Sbjct: 851  RPRIMDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPDKACSENCLALATLHSMA 910

Query: 1439 VDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPQVLMDS 1618
            VDFAKTGAPAEMP  L PRE+PDFM++  KPMY S+ +LGKLYR + +   +     + +
Sbjct: 911  VDFAKTGAPAEMPRALKPREFPDFMQRGNKPMYTSSGVLGKLYRATINSTVQTRSKFVWT 970

Query: 1619 RRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSQ 1798
            + + ++ YD   E  GF+  +  AE HK  Y+ +++ LM YY V+ E EI++GNI   +Q
Sbjct: 971  KEMAELVYDHDLEVNGFESLISVAETHKEMYEERMSLLMSYYDVEYEDEILTGNIYNKAQ 1030

Query: 1799 GTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKNFALASAWYHVTYHSSYW-S 1975
              + + +++ + K++I+++V+ L+ EA+ WF  SC    ++  LASAWY+VTYH +Y+  
Sbjct: 1031 FLLRDNRRYGEMKERIVLSVKDLQREAKEWFKSSCSKADEHQKLASAWYYVTYHPNYFQE 1090

Query: 1976 KGNLISFPWIRYDL 2017
            + N +SFPWI  D+
Sbjct: 1091 RMNSLSFPWIVGDI 1104


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  706 bits (1821), Expect = 0.0
 Identities = 372/681 (54%), Positives = 471/681 (69%), Gaps = 13/681 (1%)
 Frame = +2

Query: 11   DILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSSKYLTAEHIR 190
            ++  R  RT +Y+RI++ L NGI I NKRFEFLAFSSSQLRENS WMF+S K LTA  IR
Sbjct: 417  NVQARGRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIR 476

Query: 191  KWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVKYCFSDGIGK 370
             WMGNF  IRNVAKYAAR+GQSFSSS  T  V + E++ I DIE+   G+KY F DGIGK
Sbjct: 477  SWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFPDGIGK 536

Query: 371  ISSKMARRIAKRCGLDP-TPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLKFNSDNRTL 547
            IS++ A+++A +C L   TPSAFQIR  G+KGVVA+DPTS  KLSLR SM K+ S+N  L
Sbjct: 537  ISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENTKL 596

Query: 548  DVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENAIDILHLMS 727
            DVL WSK  PC+LNR++I LLSTLGVPD +F+  QR+ V + N +L +   A + L LMS
Sbjct: 597  DVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEALELMS 656

Query: 728  D-RDSKILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNVLIGCLDET 904
               ++ IL EML  G  P +EPFL+ ML+ FR   L EL++K RIFV +G  ++GCLDET
Sbjct: 657  PGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDET 716

Query: 905  RTLDYGEVFIQVSKTKIKGNYDEASSFEELETHVIEGDVVVAKNPCLHPGDIRKLKAVNV 1084
            RTL+YG+VF+Q S ++ +  +            +++G V+VAKNPCLHPGD+R L+AVNV
Sbjct: 717  RTLNYGQVFVQFSGSRSERRF------------IVQGKVIVAKNPCLHPGDVRVLRAVNV 764

Query: 1085 PGLVHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKEPEEPMDYTGRPA 1264
            P L HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WDP L+P K+   +PMDY+    
Sbjct: 765  PDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQI--DPMDYSPAST 822

Query: 1265 IRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVD 1444
             +LDH VTIEEI+EYF NY++NDSLGII+NAH   ADREP KA S  CLELA+L + AVD
Sbjct: 823  TKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAKLFSIAVD 882

Query: 1445 FAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPQVLMDSRR 1624
            F KTG PAE+P  L  +E+PDFMEK  KP Y+S +++GKL+R+  +    +  + + +R 
Sbjct: 883  FPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSIKLLTRE 942

Query: 1625 VCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSQGT 1804
              K  YD   E EGF D++ +A  +KS YD KL  LM YYGV+ EAEI+SG I   S+  
Sbjct: 943  KMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIMKMSRSF 1002

Query: 1805 INEKKKHSDRKDKILMAVEALRTEARGWFDE-SCKLHHK---NFALASAWYHVTYHSSYW 1972
              ++   S     I MAV +LR EAR WF+E   +L  +    +A ASAWY+VTYH SYW
Sbjct: 1003 TKKRDAES-----ISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHHSYW 1057

Query: 1973 SKGN-------LISFPWIRYD 2014
             + N        +SFPW  YD
Sbjct: 1058 GQYNEGMNRDHFLSFPWCVYD 1078