BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00013885
         (467 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAW22904.1| RNA polymerase II second largest subunit [Ephedra...   125   4e-27
gb|AAZ43091.1| RNA polymerase II second largest subunit [Gunnera...   125   6e-27
gb|AAW22929.1| RNA polymerase II second largest subunit [Musa ve...   123   3e-26
gb|AAY85223.1| RNA polymerase II second largest subunit [Nelumbo...   123   3e-26
gb|AAW22906.1| RNA polymerase II second largest subunit [Agathis...   122   4e-26
gb|AAW22905.1| RNA polymerase II second largest subunit [Welwits...   122   5e-26
gb|AAS86818.1| RNA polymerase II second largest subunit, partial...   122   5e-26
ref|XP_006859038.1| hypothetical protein AMTR_s00068p00181410 [A...   122   6e-26
gb|AAC08960.1| RNA polymerase II second largest subunit [Peperom...   122   6e-26
gb|AAC08961.1| RNA polymerase II second largest subunit [Nymphae...   122   6e-26
gb|AAC08937.1| RPB140 [Chloranthus spicatus]                          122   6e-26
emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis...   122   6e-26
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...   122   6e-26
gb|AAW22925.1| RNA polymerase II second largest subunit [Asarum ...   122   6e-26
gb|AAW22926.1| RNA polymerase II second largest subunit [Illiciu...   122   6e-26
gb|AAW22928.1| RNA polymerase II second largest subunit [Acorus ...   122   6e-26
gb|AAW22924.1| RNA polymerase II second largest subunit [Drimys ...   122   6e-26
gb|AAW22922.1| RNA polymerase II second largest subunit [Amborel...   122   6e-26
gb|AAW22923.1| RNA polymerase II second largest subunit [Trimeni...   122   6e-26
gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanu...   122   6e-26

>gb|AAW22904.1| RNA polymerase II second largest subunit [Ephedra distachya]
          Length = 551

 Score =  125 bits (315), Expect = 4e-27
 Identities = 60/68 (88%), Positives = 62/68 (91%)
 Frame = -1

Query: 467 MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRDNTTGMRHGSYEKLDEDGLAP 288
           MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSR+NT GMRHGSY+KLDEDGLAP
Sbjct: 274 MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRENTAGMRHGSYDKLDEDGLAP 333

Query: 287 PNKTGVGE 264
           P     GE
Sbjct: 334 PGTRVSGE 341


>gb|AAZ43091.1| RNA polymerase II second largest subunit [Gunnera chilensis]
          Length = 534

 Score =  125 bits (314), Expect = 6e-27
 Identities = 59/68 (86%), Positives = 62/68 (91%)
 Frame = -1

Query: 467 MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRDNTTGMRHGSYEKLDEDGLAP 288
           MNQSSIDRGFFRSLFFRSYRDEEKKMG+LVKEDFGRP+RDNT GMRHGSY+KLDEDGLAP
Sbjct: 282 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRDNTMGMRHGSYDKLDEDGLAP 341

Query: 287 PNKTGVGE 264
           P     GE
Sbjct: 342 PGTRVAGE 349


>gb|AAW22929.1| RNA polymerase II second largest subunit [Musa velutina]
          Length = 561

 Score =  123 bits (308), Expect = 3e-26
 Identities = 58/68 (85%), Positives = 62/68 (91%)
 Frame = -1

Query: 467 MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRDNTTGMRHGSYEKLDEDGLAP 288
           MNQSSIDRGFFRSLFFRSYRDEEKKMG+LVKEDFGRP+R+NT GMRHGSYEKLD+DGLAP
Sbjct: 282 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYEKLDDDGLAP 341

Query: 287 PNKTGVGE 264
           P     GE
Sbjct: 342 PGTRVSGE 349


>gb|AAY85223.1| RNA polymerase II second largest subunit [Nelumbo nucifera]
          Length = 865

 Score =  123 bits (308), Expect = 3e-26
 Identities = 58/68 (85%), Positives = 62/68 (91%)
 Frame = -1

Query: 467 MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRDNTTGMRHGSYEKLDEDGLAP 288
           MNQSSIDRGFFRSLFFRSYRDEEKKMG+LVKEDFGRPSR+NT GMRHGSY+KLD+DGLAP
Sbjct: 691 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPSRENTMGMRHGSYDKLDDDGLAP 750

Query: 287 PNKTGVGE 264
           P     GE
Sbjct: 751 PGTRVSGE 758


>gb|AAW22906.1| RNA polymerase II second largest subunit [Agathis australis]
          Length = 514

 Score =  122 bits (307), Expect = 4e-26
 Identities = 57/68 (83%), Positives = 63/68 (92%)
 Frame = -1

Query: 467 MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRDNTTGMRHGSYEKLDEDGLAP 288
           MNQSSIDRGFFRSLFFRSYRDEEK+MG+LVKE+FGRP+R+NTTGMRHGSY+KLDEDGLAP
Sbjct: 262 MNQSSIDRGFFRSLFFRSYRDEEKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDEDGLAP 321

Query: 287 PNKTGVGE 264
           P     GE
Sbjct: 322 PGTRVSGE 329


>gb|AAW22905.1| RNA polymerase II second largest subunit [Welwitschia mirabilis]
          Length = 553

 Score =  122 bits (306), Expect = 5e-26
 Identities = 57/68 (83%), Positives = 62/68 (91%)
 Frame = -1

Query: 467 MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRDNTTGMRHGSYEKLDEDGLAP 288
           MNQSSIDRGFFRSLFFRSYRDEEK+MG+LVKE+FGRPSRDNT GMRHGSY+KLD+DGLAP
Sbjct: 294 MNQSSIDRGFFRSLFFRSYRDEEKRMGTLVKEEFGRPSRDNTAGMRHGSYDKLDDDGLAP 353

Query: 287 PNKTGVGE 264
           P     GE
Sbjct: 354 PGTRVSGE 361


>gb|AAS86818.1| RNA polymerase II second largest subunit, partial [Gnetum gnemon]
          Length = 546

 Score =  122 bits (306), Expect = 5e-26
 Identities = 56/68 (82%), Positives = 63/68 (92%)
 Frame = -1

Query: 467 MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRDNTTGMRHGSYEKLDEDGLAP 288
           MNQSSIDRGFFRSLFFRSYRDEEK+MG+L+KE+FGRPSRDNT+GMRHGSY+KLD+DGLAP
Sbjct: 287 MNQSSIDRGFFRSLFFRSYRDEEKRMGTLIKEEFGRPSRDNTSGMRHGSYDKLDDDGLAP 346

Query: 287 PNKTGVGE 264
           P     GE
Sbjct: 347 PGTRVSGE 354


>ref|XP_006859038.1| hypothetical protein AMTR_s00068p00181410 [Amborella trichopoda]
            gi|548863150|gb|ERN20505.1| hypothetical protein
            AMTR_s00068p00181410 [Amborella trichopoda]
          Length = 1190

 Score =  122 bits (305), Expect = 6e-26
 Identities = 57/68 (83%), Positives = 62/68 (91%)
 Frame = -1

Query: 467  MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRDNTTGMRHGSYEKLDEDGLAP 288
            MNQSSIDRGFFRSLFFRSYRDEEKKMG+LVKEDFGRP+R+NT GMRHGSY+KLD+DGLAP
Sbjct: 798  MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAP 857

Query: 287  PNKTGVGE 264
            P     GE
Sbjct: 858  PGTRVSGE 865


>gb|AAC08960.1| RNA polymerase II second largest subunit [Peperomia caperata]
          Length = 554

 Score =  122 bits (305), Expect = 6e-26
 Identities = 57/68 (83%), Positives = 62/68 (91%)
 Frame = -1

Query: 467 MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRDNTTGMRHGSYEKLDEDGLAP 288
           MNQSSIDRGFFRSLFFRSYRDEEKKMG+LVKEDFGRP+R+NT GMRHGSY+KLD+DGLAP
Sbjct: 293 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAP 352

Query: 287 PNKTGVGE 264
           P     GE
Sbjct: 353 PGTRVSGE 360


>gb|AAC08961.1| RNA polymerase II second largest subunit [Nymphaea odorata]
          Length = 555

 Score =  122 bits (305), Expect = 6e-26
 Identities = 57/68 (83%), Positives = 62/68 (91%)
 Frame = -1

Query: 467 MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRDNTTGMRHGSYEKLDEDGLAP 288
           MNQSSIDRGFFRSLFFRSYRDEEKKMG+LVKEDFGRP+R+NT GMRHGSY+KLD+DGLAP
Sbjct: 294 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAP 353

Query: 287 PNKTGVGE 264
           P     GE
Sbjct: 354 PGTRVSGE 361


>gb|AAC08937.1| RPB140 [Chloranthus spicatus]
          Length = 533

 Score =  122 bits (305), Expect = 6e-26
 Identities = 57/68 (83%), Positives = 62/68 (91%)
 Frame = -1

Query: 467 MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRDNTTGMRHGSYEKLDEDGLAP 288
           MNQSSIDRGFFRSLFFRSYRDEEKKMG+LVKEDFGRP+R+NT GMRHGSY+KLD+DGLAP
Sbjct: 272 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAP 331

Query: 287 PNKTGVGE 264
           P     GE
Sbjct: 332 PGTRVSGE 339


>emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis piasezkii]
          Length = 551

 Score =  122 bits (305), Expect = 6e-26
 Identities = 57/68 (83%), Positives = 62/68 (91%)
 Frame = -1

Query: 467 MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRDNTTGMRHGSYEKLDEDGLAP 288
           MNQSSIDRGFFRSLFFRSYRDEEKKMG+LVKEDFGRP+R+NT GMRHGSY+KLD+DGLAP
Sbjct: 290 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAP 349

Query: 287 PNKTGVGE 264
           P     GE
Sbjct: 350 PGTRVSGE 357


>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera] gi|147841183|emb|CAN72948.1| hypothetical
            protein VITISV_033708 [Vitis vinifera]
            gi|302143287|emb|CBI21848.3| unnamed protein product
            [Vitis vinifera]
          Length = 1193

 Score =  122 bits (305), Expect = 6e-26
 Identities = 57/68 (83%), Positives = 62/68 (91%)
 Frame = -1

Query: 467  MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRDNTTGMRHGSYEKLDEDGLAP 288
            MNQSSIDRGFFRSLFFRSYRDEEKKMG+LVKEDFGRP+R+NT GMRHGSY+KLD+DGLAP
Sbjct: 805  MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAP 864

Query: 287  PNKTGVGE 264
            P     GE
Sbjct: 865  PGTRVSGE 872


>gb|AAW22925.1| RNA polymerase II second largest subunit [Asarum caudatum]
          Length = 565

 Score =  122 bits (305), Expect = 6e-26
 Identities = 57/68 (83%), Positives = 62/68 (91%)
 Frame = -1

Query: 467 MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRDNTTGMRHGSYEKLDEDGLAP 288
           MNQSSIDRGFFRSLFFRSYRDEEKKMG+LVKEDFGRP+R+NT GMRHGSY+KLD+DGLAP
Sbjct: 286 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAP 345

Query: 287 PNKTGVGE 264
           P     GE
Sbjct: 346 PGTRVSGE 353


>gb|AAW22926.1| RNA polymerase II second largest subunit [Illicium anisatum]
          Length = 539

 Score =  122 bits (305), Expect = 6e-26
 Identities = 57/68 (83%), Positives = 62/68 (91%)
 Frame = -1

Query: 467 MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRDNTTGMRHGSYEKLDEDGLAP 288
           MNQSSIDRGFFRSLFFRSYRDEEKKMG+LVKEDFGRP+R+NT GMRHGSY+KLD+DGLAP
Sbjct: 279 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAP 338

Query: 287 PNKTGVGE 264
           P     GE
Sbjct: 339 PGTRVSGE 346


>gb|AAW22928.1| RNA polymerase II second largest subunit [Acorus gramineus]
          Length = 536

 Score =  122 bits (305), Expect = 6e-26
 Identities = 57/68 (83%), Positives = 62/68 (91%)
 Frame = -1

Query: 467 MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRDNTTGMRHGSYEKLDEDGLAP 288
           MNQSSIDRGFFRSLFFRSYRDEEKKMG+LVKEDFGRP+R+NT GMRHGSY+KLD+DGLAP
Sbjct: 294 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAP 353

Query: 287 PNKTGVGE 264
           P     GE
Sbjct: 354 PGTRVSGE 361


>gb|AAW22924.1| RNA polymerase II second largest subunit [Drimys winteri]
          Length = 565

 Score =  122 bits (305), Expect = 6e-26
 Identities = 57/68 (83%), Positives = 62/68 (91%)
 Frame = -1

Query: 467 MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRDNTTGMRHGSYEKLDEDGLAP 288
           MNQSSIDRGFFRSLFFRSYRDEEKKMG+LVKEDFGRP+R+NT GMRHGSY+KLD+DGLAP
Sbjct: 286 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAP 345

Query: 287 PNKTGVGE 264
           P     GE
Sbjct: 346 PGTRVSGE 353


>gb|AAW22922.1| RNA polymerase II second largest subunit [Amborella trichopoda]
          Length = 516

 Score =  122 bits (305), Expect = 6e-26
 Identities = 57/68 (83%), Positives = 62/68 (91%)
 Frame = -1

Query: 467 MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRDNTTGMRHGSYEKLDEDGLAP 288
           MNQSSIDRGFFRSLFFRSYRDEEKKMG+LVKEDFGRP+R+NT GMRHGSY+KLD+DGLAP
Sbjct: 261 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAP 320

Query: 287 PNKTGVGE 264
           P     GE
Sbjct: 321 PGTRVSGE 328


>gb|AAW22923.1| RNA polymerase II second largest subunit [Trimenia moorei]
          Length = 531

 Score =  122 bits (305), Expect = 6e-26
 Identities = 57/68 (83%), Positives = 62/68 (91%)
 Frame = -1

Query: 467 MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRDNTTGMRHGSYEKLDEDGLAP 288
           MNQSSIDRGFFRSLFFRSYRDEEKKMG+LVKEDFGRP+R+NT GMRHGSY+KLD+DGLAP
Sbjct: 288 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAP 347

Query: 287 PNKTGVGE 264
           P     GE
Sbjct: 348 PGTRVSGE 355


>gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
          Length = 923

 Score =  122 bits (305), Expect = 6e-26
 Identities = 57/68 (83%), Positives = 62/68 (91%)
 Frame = -1

Query: 467 MNQSSIDRGFFRSLFFRSYRDEEKKMGSLVKEDFGRPSRDNTTGMRHGSYEKLDEDGLAP 288
           MNQSSIDRGFFRSLFFRSYRDEEKKMG+LVKEDFGRP+R+NT GMRHGSY+KLD+DGLAP
Sbjct: 671 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAP 730

Query: 287 PNKTGVGE 264
           P     GE
Sbjct: 731 PGTRVSGE 738