BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00013584
         (735 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006857036.1| hypothetical protein AMTR_s00065p00022170 [A...   265   9e-69
ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   263   4e-68
ref|XP_006660443.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   263   4e-68
dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa...   261   1e-67
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g...   261   1e-67
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo...   261   1e-67
ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   261   2e-67
gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus pe...   256   5e-66
gb|AAF32492.1|AF091838_1 single-subunit RNA polymerase G [Tritic...   253   4e-65
tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]         253   6e-65
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   252   8e-65
emb|CAE52834.1| RNA polymerase [Hordeum vulgare]                      252   8e-65
ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays] gi|...   252   8e-65
ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [A...   252   1e-64
ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   252   1e-64
gb|EXB77633.1| DNA-directed RNA polymerase 2B [Morus notabilis]       249   5e-64
ref|XP_004491959.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   249   5e-64
ref|XP_004491958.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   249   5e-64
ref|XP_004491957.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   249   5e-64
ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   249   9e-64

>ref|XP_006857036.1| hypothetical protein AMTR_s00065p00022170 [Amborella trichopoda]
           gi|548861119|gb|ERN18503.1| hypothetical protein
           AMTR_s00065p00022170 [Amborella trichopoda]
          Length = 987

 Score =  265 bits (678), Expect = 9e-69
 Identities = 129/246 (52%), Positives = 173/246 (70%), Gaps = 2/246 (0%)
 Frame = -1

Query: 732 DC-SVPVLQAALKLGEAVEQEVRVHKFLEXXXXXXXXXXXXXXXXTS-NLNDEYLQQKIT 559
           DC SV V+QAA ++GEAVE E R+H FLE                 S +   E L++++T
Sbjct: 250 DCGSVRVVQAACQIGEAVEHEARIHDFLEKTKKKSRRGKKVGEESESLSKEQENLRKRVT 309

Query: 558 KLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEI 379
            L+K  K R VR ++ + D    W    HAK+GS L+++ I+TAYIQPP DQ  + PPEI
Sbjct: 310 NLMKMQKLREVRKLVRQGDDVKPWGQDAHAKLGSRLIELFIKTAYIQPPVDQQAEGPPEI 369

Query: 378 RPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHVVTPYTPMLIKPNTWKGYN 199
           RPAF+H F+T   + +K  +R GVIECDPLV +GL++ ARH+VT YTPMLI+P  W+GY+
Sbjct: 370 RPAFRHTFRTFTKDRQKFCRRYGVIECDPLVHKGLDKTARHMVTAYTPMLIRPKPWRGYD 429

Query: 198 KGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESI 19
           KG YL LPS +MRIHG+++QREA+KNVP+ Q+Q V++ALD LGSTKWR+N++IL VV  +
Sbjct: 430 KGGYLVLPSQIMRIHGAKQQREAVKNVPQKQLQNVFEALDTLGSTKWRVNKRILDVVNRV 489

Query: 18  WAEGGG 1
           WA GGG
Sbjct: 490 WARGGG 495


>ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
           isoform X2 [Oryza brachyantha]
          Length = 839

 Score =  263 bits (672), Expect = 4e-68
 Identities = 128/246 (52%), Positives = 172/246 (69%), Gaps = 3/246 (1%)
 Frame = -1

Query: 732 DCSVPVLQAALKLGEAVEQEVRVHKFLEXXXXXXXXXXXXXXXXTSN---LNDEYLQQKI 562
           D SV V+QAA ++GEA+E EVR+HKFLE                  +      E L++K+
Sbjct: 101 DGSVRVIQAACQIGEAIEHEVRLHKFLEKPKKKRSKEMDNEEEVGCSDIAKEQERLRKKV 160

Query: 561 TKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPE 382
           T L+K+ K R VR I+ K D S  W    HAKVGS L++++I+TAYIQPP  QS   PP+
Sbjct: 161 TDLMKKHKLRQVRYIVKKQDNSKPWGQDVHAKVGSRLIELMIETAYIQPPASQSADGPPD 220

Query: 381 IRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHVVTPYTPMLIKPNTWKGY 202
           IRPAF H  +T   E +K ++R GVI+CDPLV+QGL+R A+H+V PY PMLI P +W GY
Sbjct: 221 IRPAFTHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGY 280

Query: 201 NKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVES 22
           +KG +LFLPS+VMR HG+R+QREA+K  P+ QMQ V++ALD LGSTKWR+N+++L +V+ 
Sbjct: 281 DKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFEALDTLGSTKWRVNKRVLSIVDR 340

Query: 21  IWAEGG 4
           IW+ GG
Sbjct: 341 IWSSGG 346


>ref|XP_006660443.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
           isoform X1 [Oryza brachyantha]
          Length = 703

 Score =  263 bits (672), Expect = 4e-68
 Identities = 128/246 (52%), Positives = 172/246 (69%), Gaps = 3/246 (1%)
 Frame = -1

Query: 732 DCSVPVLQAALKLGEAVEQEVRVHKFLEXXXXXXXXXXXXXXXXTSN---LNDEYLQQKI 562
           D SV V+QAA ++GEA+E EVR+HKFLE                  +      E L++K+
Sbjct: 74  DGSVRVIQAACQIGEAIEHEVRLHKFLEKPKKKRSKEMDNEEEVGCSDIAKEQERLRKKV 133

Query: 561 TKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPE 382
           T L+K+ K R VR I+ K D S  W    HAKVGS L++++I+TAYIQPP  QS   PP+
Sbjct: 134 TDLMKKHKLRQVRYIVKKQDNSKPWGQDVHAKVGSRLIELMIETAYIQPPASQSADGPPD 193

Query: 381 IRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHVVTPYTPMLIKPNTWKGY 202
           IRPAF H  +T   E +K ++R GVI+CDPLV+QGL+R A+H+V PY PMLI P +W GY
Sbjct: 194 IRPAFTHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGY 253

Query: 201 NKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVES 22
           +KG +LFLPS+VMR HG+R+QREA+K  P+ QMQ V++ALD LGSTKWR+N+++L +V+ 
Sbjct: 254 DKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFEALDTLGSTKWRVNKRVLSIVDR 313

Query: 21  IWAEGG 4
           IW+ GG
Sbjct: 314 IWSSGG 319


>dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
            gi|48716846|dbj|BAD23544.1| putative phage-type RNA
            polymerase [Oryza sativa Japonica Group]
            gi|215694941|dbj|BAG90132.1| unnamed protein product
            [Oryza sativa Japonica Group]
          Length = 951

 Score =  261 bits (668), Expect = 1e-67
 Identities = 125/246 (50%), Positives = 173/246 (70%), Gaps = 3/246 (1%)
 Frame = -1

Query: 732  DCSVPVLQAALKLGEAVEQEVRVHKFLEXXXXXXXXXXXXXXXXTSN---LNDEYLQQKI 562
            D SV V+QAA ++GEA+E EVR+HKFLE                  +      E L++K+
Sbjct: 279  DGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKV 338

Query: 561  TKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPE 382
            T L+K+ K R VR+I+ K D S  W    HAKVGS L++++I+TAYIQPP  QS   PP+
Sbjct: 339  TDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPD 398

Query: 381  IRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHVVTPYTPMLIKPNTWKGY 202
            IRPAF H  +T   E +K ++R GVI+CDPLV+QGL+R A+H+V PY PMLI P +W GY
Sbjct: 399  IRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGY 458

Query: 201  NKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVES 22
            +KG +LFLPS+VMR HG+R+QR+A++  P+ QMQ V++AL+ LGSTKWR+N+++L +V+ 
Sbjct: 459  DKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDR 518

Query: 21   IWAEGG 4
            IW+ GG
Sbjct: 519  IWSSGG 524


>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
            gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
            Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
            single subunit RNA polymerase [Oryza sativa Japonica
            Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
            sativa Japonica Group]
          Length = 1017

 Score =  261 bits (668), Expect = 1e-67
 Identities = 125/246 (50%), Positives = 173/246 (70%), Gaps = 3/246 (1%)
 Frame = -1

Query: 732  DCSVPVLQAALKLGEAVEQEVRVHKFLEXXXXXXXXXXXXXXXXTSN---LNDEYLQQKI 562
            D SV V+QAA ++GEA+E EVR+HKFLE                  +      E L++K+
Sbjct: 279  DGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKV 338

Query: 561  TKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPE 382
            T L+K+ K R VR+I+ K D S  W    HAKVGS L++++I+TAYIQPP  QS   PP+
Sbjct: 339  TDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPD 398

Query: 381  IRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHVVTPYTPMLIKPNTWKGY 202
            IRPAF H  +T   E +K ++R GVI+CDPLV+QGL+R A+H+V PY PMLI P +W GY
Sbjct: 399  IRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGY 458

Query: 201  NKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVES 22
            +KG +LFLPS+VMR HG+R+QR+A++  P+ QMQ V++AL+ LGSTKWR+N+++L +V+ 
Sbjct: 459  DKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDR 518

Query: 21   IWAEGG 4
            IW+ GG
Sbjct: 519  IWSSGG 524


>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
          Length = 983

 Score =  261 bits (668), Expect = 1e-67
 Identities = 125/246 (50%), Positives = 173/246 (70%), Gaps = 3/246 (1%)
 Frame = -1

Query: 732 DCSVPVLQAALKLGEAVEQEVRVHKFLEXXXXXXXXXXXXXXXXTSN---LNDEYLQQKI 562
           D SV V+QAA ++GEA+E EVR+HKFLE                  +      E L++K+
Sbjct: 245 DGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKV 304

Query: 561 TKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPE 382
           T L+K+ K R VR+I+ K D S  W    HAKVGS L++++I+TAYIQPP  QS   PP+
Sbjct: 305 TDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPD 364

Query: 381 IRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHVVTPYTPMLIKPNTWKGY 202
           IRPAF H  +T   E +K ++R GVI+CDPLV+QGL+R A+H+V PY PMLI P +W GY
Sbjct: 365 IRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGY 424

Query: 201 NKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVES 22
           +KG +LFLPS+VMR HG+R+QR+A++  P+ QMQ V++AL+ LGSTKWR+N+++L +V+ 
Sbjct: 425 DKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDR 484

Query: 21  IWAEGG 4
           IW+ GG
Sbjct: 485 IWSSGG 490


>ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial-like [Brachypodium
           distachyon]
          Length = 992

 Score =  261 bits (666), Expect = 2e-67
 Identities = 126/246 (51%), Positives = 172/246 (69%), Gaps = 3/246 (1%)
 Frame = -1

Query: 732 DCSVPVLQAALKLGEAVEQEVRVHKFLEXXXXXXXXXXXXXXXXTSN---LNDEYLQQKI 562
           D SV V+QAA ++GEA+E EVR+HKFLE                  +      + L++K+
Sbjct: 254 DGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKNTKEVDNVVEAGDSDIAKEQQRLRKKV 313

Query: 561 TKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPE 382
           T L+K+ K R VR+I+ K D +  W    HAKVGS L+++LI+TA+IQPP  QS    P+
Sbjct: 314 TDLMKKQKIRQVRNIVKKQDSTRPWGQDAHAKVGSRLIELLIETAHIQPPVSQSADSTPD 373

Query: 381 IRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHVVTPYTPMLIKPNTWKGY 202
           IRPAF H  +T   E +K ++R GVI+CDPL++QGL+R A+H+V PY PMLI P +W GY
Sbjct: 374 IRPAFTHEMRTVTREQQKSSRRYGVIKCDPLIRQGLDRTAKHMVIPYMPMLIPPISWTGY 433

Query: 201 NKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVES 22
           +KG +LFLPS+VMR HG+R+QREA+K  PK QMQ +++ALD LGSTKWRIN+K+L +V+ 
Sbjct: 434 DKGAHLFLPSYVMRTHGARQQREAVKKAPKEQMQLIFEALDTLGSTKWRINKKVLSIVDR 493

Query: 21  IWAEGG 4
           IW+ GG
Sbjct: 494 IWSSGG 499


>gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score =  256 bits (654), Expect = 5e-66
 Identities = 123/239 (51%), Positives = 166/239 (69%), Gaps = 1/239 (0%)
 Frame = -1

Query: 717  VLQAALKLGEAVEQEVRVHKFLEXXXXXXXXXXXXXXXXTSNLND-EYLQQKITKLLKRS 541
            V+ AA  +GEA+EQEVR+HKFLE                 +   + E L +K+T L+K+ 
Sbjct: 293  VVAAACTIGEAIEQEVRIHKFLEMTRKKKVDKDQENGESDAAKKEREKLNKKVTNLMKKQ 352

Query: 540  KGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPAFKH 361
            K + VR I+SK D S SW     AKVGS L+++L QTA+IQPP DQ    PP+IRPAF H
Sbjct: 353  KLKAVRGIVSKHDASKSWSLEARAKVGSRLIELLTQTAFIQPPADQLADGPPDIRPAFVH 412

Query: 360  IFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHVVTPYTPMLIKPNTWKGYNKGPYLF 181
             F+T   + +  ++R GVIECDPLV +GLE+ ARH+V PY PML+ P  W GY+KG Y F
Sbjct: 413  TFRTVAKDAKNASRRYGVIECDPLVLKGLEKTARHMVIPYMPMLVPPLNWTGYDKGGYFF 472

Query: 180  LPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAEGG 4
            LPS+VMRIHG+R+QREA+K  P+ Q++ V++ALD LG+T+WR+N+++L VV+ IWA GG
Sbjct: 473  LPSYVMRIHGARQQREAIKRTPREQLEPVFKALDALGNTRWRVNKRVLSVVDRIWASGG 531


>gb|AAF32492.1|AF091838_1 single-subunit RNA polymerase G [Triticum aestivum]
          Length = 1005

 Score =  253 bits (647), Expect = 4e-65
 Identities = 127/246 (51%), Positives = 168/246 (68%), Gaps = 3/246 (1%)
 Frame = -1

Query: 732  DCSVPVLQAALKLGEAVEQEVRVHKFLEXXXXXXXXXXXXXXXXTSN---LNDEYLQQKI 562
            D SV V+QAA ++GEAVE EVR+HKFLE                         E L++K+
Sbjct: 268  DGSVRVIQAACQIGEAVEHEVRIHKFLEKTKKKNTKEVDKVVEAVDADIAKEQERLRKKV 327

Query: 561  TKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPE 382
            T L+K+ K R VR ++ K D +  W    HAKVGS L+++ I+TA+IQPP  QS    PE
Sbjct: 328  TDLMKKQKIRQVRHLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSGDSTPE 387

Query: 381  IRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHVVTPYTPMLIKPNTWKGY 202
            IRPAF H  +T   E RK ++R GVI+CDPLV+QGL+R A+H+V PY PMLI P  W GY
Sbjct: 388  IRPAFTHEMRTVAREQRK-SRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGY 446

Query: 201  NKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVES 22
            +KG +LFLPS+VMR HG+R+QREA+K  PK QMQ +++ALD LGSTKWR+N+++L +V+ 
Sbjct: 447  DKGAHLFLPSYVMRTHGARQQREAVKKAPKEQMQTIFEALDNLGSTKWRVNKEVLSIVDR 506

Query: 21   IWAEGG 4
            IW+ GG
Sbjct: 507  IWSSGG 512


>tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]
          Length = 975

 Score =  253 bits (645), Expect = 6e-65
 Identities = 122/246 (49%), Positives = 171/246 (69%), Gaps = 3/246 (1%)
 Frame = -1

Query: 732 DCSVPVLQAALKLGEAVEQEVRVHKFLEXXXXXXXXXXXXXXXXTSN---LNDEYLQQKI 562
           D SV V+QAA ++GEA+E EVR+++FLE                      +  + L++K+
Sbjct: 237 DGSVRVIQAACQIGEAIEHEVRINRFLEKTRKKNNKEMENEEEAGDTNIAIEQQRLRKKV 296

Query: 561 TKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPE 382
           T L+K+ K R VR+I+   DKS  W    HAKVGS L+D+ I TA+IQPP  QS    P+
Sbjct: 297 TDLMKKQKLRQVRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQSSDGLPD 356

Query: 381 IRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHVVTPYTPMLIKPNTWKGY 202
           IRPAF+H  +T + E +K ++R GVI+CDPLV+QGL+R A+H+V PY PMLI P  W GY
Sbjct: 357 IRPAFRHEMRTMVKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGY 416

Query: 201 NKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVES 22
           +KG +LFLPS+VMR HG+R+QR+A+K  P+ QMQ V++AL+ LGSTKWR+N+++L +V+ 
Sbjct: 417 DKGAHLFLPSYVMRTHGARQQRDAVKRAPREQMQFVFEALNTLGSTKWRVNKRVLSIVDR 476

Query: 21  IWAEGG 4
           IW+ GG
Sbjct: 477 IWSNGG 482


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score =  252 bits (644), Expect = 8e-65
 Identities = 127/245 (51%), Positives = 166/245 (67%), Gaps = 4/245 (1%)
 Frame = -1

Query: 726  SVPVLQAALKLGEAVEQEVRVHKFLEXXXXXXXXXXXXXXXXTSNL---NDEYLQQKITK 556
            S  V+QAA  +G+A+EQEVR+H FLE                  +      E L++K+T 
Sbjct: 298  STRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVEGGGFDPVIHEQEKLRKKVTN 357

Query: 555  LLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQD-PPEI 379
            L+K+ K    R I+   D S  W     AKVGS L+++L+QTAYIQPP D  L D PP+I
Sbjct: 358  LMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPPDI 417

Query: 378  RPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHVVTPYTPMLIKPNTWKGYN 199
            RPAF H FKT M E +K  +R GVIECDPLVK+GLER ARH+V PY PML+ P  W GY+
Sbjct: 418  RPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWTGYD 477

Query: 198  KGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESI 19
            KG +LFLPS+VMR HG+R+QREA+K  P+NQ++ V++AL+ LG+TKWRIN+++  VV+ I
Sbjct: 478  KGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRLFDVVDRI 537

Query: 18   WAEGG 4
            WA GG
Sbjct: 538  WAGGG 542


>emb|CAE52834.1| RNA polymerase [Hordeum vulgare]
          Length = 862

 Score =  252 bits (644), Expect = 8e-65
 Identities = 124/246 (50%), Positives = 169/246 (68%), Gaps = 3/246 (1%)
 Frame = -1

Query: 732 DCSVPVLQAALKLGEAVEQEVRVHKFLEXXXXXXXXXXXXXXXXTSN---LNDEYLQQKI 562
           D SV V+QAA ++GEAVE EVR+HKFLE                  +      + L++K+
Sbjct: 126 DGSVRVIQAACQIGEAVEHEVRIHKFLEKTKKKNTKEVDKVVEPGDSDIAKEQQLLRKKV 185

Query: 561 TKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPE 382
           T L+K+ K R VR ++ K D +  W    HAKVGS L+++ I+TA+IQPP  QS    PE
Sbjct: 186 TDLMKKQKIRQVRHLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSGDSTPE 245

Query: 381 IRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHVVTPYTPMLIKPNTWKGY 202
           IRPAF H  +T   E  ++++R GVI+CDPLV+QGL+R A+H+V PY PMLI P  W GY
Sbjct: 246 IRPAFTHEMRTVARE--QKSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGY 303

Query: 201 NKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVES 22
           +KG +LFLPS+VMR HG+R+QREA+K  PK QMQ +++ALD LGSTKWR+N+++L +V+ 
Sbjct: 304 DKGAHLFLPSYVMRTHGARQQREAVKKAPKEQMQTIFEALDNLGSTKWRVNKRVLSIVDR 363

Query: 21  IWAEGG 4
           IW+ GG
Sbjct: 364 IWSSGG 369


>ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays]
           gi|4559304|gb|AAD22976.1|AF127021_1 T7-like RNA
           polymerase [Zea mays]
          Length = 975

 Score =  252 bits (644), Expect = 8e-65
 Identities = 122/246 (49%), Positives = 171/246 (69%), Gaps = 3/246 (1%)
 Frame = -1

Query: 732 DCSVPVLQAALKLGEAVEQEVRVHKFLEXXXXXXXXXXXXXXXXTSN---LNDEYLQQKI 562
           D SV V+QAA ++GEA+E EVR+++FLE                      +  + L++K+
Sbjct: 237 DGSVRVIQAACQIGEAIEHEVRINRFLEKTRKKNNKEMENEEEAGDTNIAVEQQRLRKKV 296

Query: 561 TKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPE 382
           T L+K+ K R VR+I+   DKS  W    HAKVGS L+D+ I TA+IQPP  QS    P+
Sbjct: 297 TDLMKKQKLRQVRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQSSDGLPD 356

Query: 381 IRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHVVTPYTPMLIKPNTWKGY 202
           IRPAF+H  +T + E +K ++R GVI+CDPLV+QGL+R A+H+V PY PMLI P  W GY
Sbjct: 357 IRPAFRHEMRTMVKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGY 416

Query: 201 NKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVES 22
           +KG +LFLPS+VMR HG+R+QR+A+K  P+ QMQ V++AL+ LGSTKWR+N+++L +V+ 
Sbjct: 417 DKGAHLFLPSYVMRTHGARQQRDAVKRAPREQMQFVFEALNTLGSTKWRVNKRVLSIVDR 476

Query: 21  IWAEGG 4
           IW+ GG
Sbjct: 477 IWSNGG 482


>ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [Amborella trichopoda]
           gi|548846502|gb|ERN05778.1| hypothetical protein
           AMTR_s00006p00254180 [Amborella trichopoda]
          Length = 1006

 Score =  252 bits (643), Expect = 1e-64
 Identities = 119/243 (48%), Positives = 171/243 (70%), Gaps = 2/243 (0%)
 Frame = -1

Query: 726 SVPVLQAALKLGEAVEQEVRVHKFLEXXXXXXXXXXXXXXXXTS--NLNDEYLQQKITKL 553
           S  ++QAA ++GEA+EQEV++H+F E                 +  +   E L++++T L
Sbjct: 271 STRLVQAACQIGEAIEQEVKIHRFFEKTKKKSDKEKKLDGEEPNEGDKEKESLRKRVTNL 330

Query: 552 LKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRP 373
           +K+ K   VR I+   D +  W    HAKVGS L+++LI+TAY+QPP DQS + PP+IRP
Sbjct: 331 MKKQKLHQVRKIVKGQDDAKPWGIDIHAKVGSRLIELLIETAYVQPPVDQSAEGPPDIRP 390

Query: 372 AFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHVVTPYTPMLIKPNTWKGYNKG 193
           AF+HI KT     +K  +R GVIECDPL+ +GLE+ ARH+V PY PML+ P  W GY++G
Sbjct: 391 AFRHILKTVTKNDQKIRRRYGVIECDPLICKGLEKTARHMVIPYMPMLVPPVKWTGYDRG 450

Query: 192 PYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWA 13
            +LFLPS+VMRIHG+R+QR A+K+ P+ Q+ KVY+ALD LG+TKWR+N+++L V++ IWA
Sbjct: 451 GHLFLPSYVMRIHGARQQRYAIKHAPRKQLLKVYEALDTLGTTKWRVNKRVLGVIDRIWA 510

Query: 12  EGG 4
           +GG
Sbjct: 511 DGG 513


>ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
            [Setaria italica]
          Length = 1005

 Score =  252 bits (643), Expect = 1e-64
 Identities = 121/246 (49%), Positives = 169/246 (68%), Gaps = 3/246 (1%)
 Frame = -1

Query: 732  DCSVPVLQAALKLGEAVEQEVRVHKFLEXXXXXXXXXXXXXXXXTSN---LNDEYLQQKI 562
            D SV V+QAA ++GEA+E EVR+H+FLE                  +      + L++K+
Sbjct: 267  DGSVRVIQAACQIGEAIEHEVRIHRFLEKTRKKSNKEKENEEEIFDSDIAKEQQRLRKKV 326

Query: 561  TKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPE 382
            T L+K+ K R VR I+   D S  W    HAKVGS L+++ I+TA+IQPP  QS    P+
Sbjct: 327  TDLMKKQKLRQVRKIVKNQDDSRPWGQDAHAKVGSRLIELFIETAHIQPPASQSSDGLPD 386

Query: 381  IRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHVVTPYTPMLIKPNTWKGY 202
            IRPAF+H  +T   E +K ++R GVI+CDPLV+QGL+R A+H+V PY PMLI P  W GY
Sbjct: 387  IRPAFRHEMRTVPKEQQKHSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGY 446

Query: 201  NKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVES 22
            +KG +LFLPS+VMR HG+R+QREA+K  P+ QMQ V++AL+ LGSTKWR+N+++L +++ 
Sbjct: 447  DKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFEALNTLGSTKWRVNKRVLSIIDR 506

Query: 21   IWAEGG 4
            IW+ GG
Sbjct: 507  IWSSGG 512


>gb|EXB77633.1| DNA-directed RNA polymerase 2B [Morus notabilis]
          Length = 1093

 Score =  249 bits (637), Expect = 5e-64
 Identities = 120/238 (50%), Positives = 164/238 (68%)
 Frame = -1

Query: 717 VLQAALKLGEAVEQEVRVHKFLEXXXXXXXXXXXXXXXXTSNLNDEYLQQKITKLLKRSK 538
           V+QA+L +G+A+EQEV++ +FLE                  +  +E L++++TKL+K+ K
Sbjct: 283 VVQASLLIGDAIEQEVKIQRFLEKSQNKKVGKDGENRGEPGSKVEEKLKKRVTKLMKQKK 342

Query: 537 GRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPAFKHI 358
            R +R  +++ D S  W     AKVGS L+++LIQTAYIQPP DQ   DPPEIRPAF H 
Sbjct: 343 LRALRQTMNEWDGSKPWSQSIKAKVGSRLIELLIQTAYIQPPVDQFSDDPPEIRPAFVHT 402

Query: 357 FKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHVVTPYTPMLIKPNTWKGYNKGPYLFL 178
            KT   + +K  K+ G I+CDPLV +GLE+ A HVV PY PML+ P  WKGY+KG + FL
Sbjct: 403 LKTLTKDPKKTGKKFGFIQCDPLVVKGLEKSANHVVIPYMPMLVPPIKWKGYDKGGHFFL 462

Query: 177 PSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAEGG 4
           PS++MR HG R+QREA+K  P+ Q++ V++ALD LG TKWRIN+++L VVE IWA GG
Sbjct: 463 PSYLMRTHGVRQQREAVKKAPREQLEPVFEALDTLGHTKWRINKRVLDVVERIWAGGG 520


>ref|XP_004491959.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like isoform X3 [Cicer
            arietinum]
          Length = 1053

 Score =  249 bits (637), Expect = 5e-64
 Identities = 121/244 (49%), Positives = 167/244 (68%), Gaps = 3/244 (1%)
 Frame = -1

Query: 726  SVPVLQAALKLGEAVEQEVRVHKFLEXXXXXXXXXXXXXXXXTSNLN---DEYLQQKITK 556
            S  V+Q+   +G+A+EQEVR+HKFLE                 S  +   +E L++K+  
Sbjct: 317  SCRVVQSVCSIGDAIEQEVRIHKFLEKRNKKKRGKGKKNQTVESTADINEEEKLRKKVID 376

Query: 555  LLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIR 376
            L+K+ K   VR I+   D +  W +V   KVGS L+++L+QTAYIQPP+D+S    P+IR
Sbjct: 377  LMKKQKLAAVRGIVKGHDDTKPWGSVMKTKVGSRLVELLVQTAYIQPPSDESQDGVPDIR 436

Query: 375  PAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHVVTPYTPMLIKPNTWKGYNK 196
            PAF H F+T   + +K  K+ GVIECDPL+ +GLER A+++V PY PML+ P  W GY+K
Sbjct: 437  PAFVHSFRTVTHDAKKTGKKYGVIECDPLILKGLERTAKNMVIPYMPMLVPPTNWTGYDK 496

Query: 195  GPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIW 16
            G YLFLPS+VMR HG ++QREA+KNVP+ Q++ VY+ALD LG TKWRIN+++L VV+ IW
Sbjct: 497  GGYLFLPSYVMRTHGVKQQREAVKNVPRKQLEPVYEALDTLGHTKWRINKEVLSVVDRIW 556

Query: 15   AEGG 4
            A GG
Sbjct: 557  ATGG 560


>ref|XP_004491958.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like isoform X2 [Cicer
            arietinum]
          Length = 1090

 Score =  249 bits (637), Expect = 5e-64
 Identities = 121/244 (49%), Positives = 167/244 (68%), Gaps = 3/244 (1%)
 Frame = -1

Query: 726  SVPVLQAALKLGEAVEQEVRVHKFLEXXXXXXXXXXXXXXXXTSNLN---DEYLQQKITK 556
            S  V+Q+   +G+A+EQEVR+HKFLE                 S  +   +E L++K+  
Sbjct: 354  SCRVVQSVCSIGDAIEQEVRIHKFLEKRNKKKRGKGKKNQTVESTADINEEEKLRKKVID 413

Query: 555  LLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIR 376
            L+K+ K   VR I+   D +  W +V   KVGS L+++L+QTAYIQPP+D+S    P+IR
Sbjct: 414  LMKKQKLAAVRGIVKGHDDTKPWGSVMKTKVGSRLVELLVQTAYIQPPSDESQDGVPDIR 473

Query: 375  PAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHVVTPYTPMLIKPNTWKGYNK 196
            PAF H F+T   + +K  K+ GVIECDPL+ +GLER A+++V PY PML+ P  W GY+K
Sbjct: 474  PAFVHSFRTVTHDAKKTGKKYGVIECDPLILKGLERTAKNMVIPYMPMLVPPTNWTGYDK 533

Query: 195  GPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIW 16
            G YLFLPS+VMR HG ++QREA+KNVP+ Q++ VY+ALD LG TKWRIN+++L VV+ IW
Sbjct: 534  GGYLFLPSYVMRTHGVKQQREAVKNVPRKQLEPVYEALDTLGHTKWRINKEVLSVVDRIW 593

Query: 15   AEGG 4
            A GG
Sbjct: 594  ATGG 597


>ref|XP_004491957.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like isoform X1 [Cicer
            arietinum]
          Length = 1126

 Score =  249 bits (637), Expect = 5e-64
 Identities = 121/244 (49%), Positives = 167/244 (68%), Gaps = 3/244 (1%)
 Frame = -1

Query: 726  SVPVLQAALKLGEAVEQEVRVHKFLEXXXXXXXXXXXXXXXXTSNLN---DEYLQQKITK 556
            S  V+Q+   +G+A+EQEVR+HKFLE                 S  +   +E L++K+  
Sbjct: 390  SCRVVQSVCSIGDAIEQEVRIHKFLEKRNKKKRGKGKKNQTVESTADINEEEKLRKKVID 449

Query: 555  LLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIR 376
            L+K+ K   VR I+   D +  W +V   KVGS L+++L+QTAYIQPP+D+S    P+IR
Sbjct: 450  LMKKQKLAAVRGIVKGHDDTKPWGSVMKTKVGSRLVELLVQTAYIQPPSDESQDGVPDIR 509

Query: 375  PAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHVVTPYTPMLIKPNTWKGYNK 196
            PAF H F+T   + +K  K+ GVIECDPL+ +GLER A+++V PY PML+ P  W GY+K
Sbjct: 510  PAFVHSFRTVTHDAKKTGKKYGVIECDPLILKGLERTAKNMVIPYMPMLVPPTNWTGYDK 569

Query: 195  GPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIW 16
            G YLFLPS+VMR HG ++QREA+KNVP+ Q++ VY+ALD LG TKWRIN+++L VV+ IW
Sbjct: 570  GGYLFLPSYVMRTHGVKQQREAVKNVPRKQLEPVYEALDTLGHTKWRINKEVLSVVDRIW 629

Query: 15   AEGG 4
            A GG
Sbjct: 630  ATGG 633


>ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial-like [Solanum lycopersicum]
          Length = 1022

 Score =  249 bits (635), Expect = 9e-64
 Identities = 124/242 (51%), Positives = 164/242 (67%), Gaps = 1/242 (0%)
 Frame = -1

Query: 726  SVPVLQAALKLGEAVEQEVRVHKFLEXXXXXXXXXXXXXXXXT-SNLNDEYLQQKITKLL 550
            +V V+QAAL +G+A+EQEVR+HKFLE                  + L  + L +K+T L+
Sbjct: 288  NVRVVQAALTIGDAIEQEVRIHKFLEKTEKHKAEKDRNMEDGEHATLEQKKLHKKVTSLM 347

Query: 549  KRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPA 370
            K+ K R V  I+   D S  W     AKVGS L++ L+QTAYIQ P DQ   DPP+IRPA
Sbjct: 348  KKQKLRAVNQIVRSQDDSKPWGQDAKAKVGSRLIEFLLQTAYIQSPADQLAVDPPDIRPA 407

Query: 369  FKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHVVTPYTPMLIKPNTWKGYNKGP 190
            F H  +T   E +  ++R GVI+CD LV +GLER ARH+V PY PML+ P  W GY+KG 
Sbjct: 408  FIHSTRTLAKETKSASRRYGVIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGG 467

Query: 189  YLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAE 10
            +L+LPS+VMR HG+R+QREA+K   +NQ+Q V++ALD LGSTKWRIN+++L VV+ IWA 
Sbjct: 468  HLYLPSYVMRTHGARQQREAVKRTSRNQLQPVFEALDTLGSTKWRINKRVLSVVDRIWAG 527

Query: 9    GG 4
            GG
Sbjct: 528  GG 529