BLASTX nr result
ID: Ephedra26_contig00013447
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00013447
(701 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 459 e-127
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 444 e-122
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 443 e-122
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 443 e-122
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 443 e-122
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 443 e-122
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 443 e-122
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 443 e-122
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a... 439 e-121
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 372 e-101
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 352 5e-95
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2... 250 3e-64
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 249 8e-64
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A... 242 7e-62
gb|ACS28228.1| replicase [Alternanthera mosaic virus] 231 1e-58
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai... 231 1e-58
gb|ACS28233.1| replicase [Alternanthera mosaic virus] 230 3e-58
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082... 230 4e-58
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548... 228 1e-57
ref|NP_077079.1| replicase [Clover yellow mosaic virus] 226 7e-57
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 459 bits (1181), Expect = e-127
Identities = 220/233 (94%), Positives = 227/233 (97%)
Frame = +1
Query: 1 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQR 180
LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT+GHL A NQPT+TAQR
Sbjct: 183 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTIGHLQAPNQPTVTAQR 242
Query: 181 LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFY 360
LETKGANHLFIFQRGNYLTPERRTFTTT+ YVTVPDIFLPEKYNCRTPISKTIMMQMFFY
Sbjct: 243 LETKGANHLFIFQRGNYLTPERRTFTTTDPYVTVPDIFLPEKYNCRTPISKTIMMQMFFY 302
Query: 361 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNL 540
IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEF ASLDSHTCFEDVLSGNL
Sbjct: 303 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFAASLDSHTCFEDVLSGNL 362
Query: 541 IQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGP 699
+QRLLRPLR+D+QR+L FFRGRPSFVKLIKALDWQPITLEFPVR VNTRLRGP
Sbjct: 363 LQRLLRPLRADMQRILHFFRGRPSFVKLIKALDWQPITLEFPVRRVNTRLRGP 415
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 444 bits (1142), Expect = e-122
Identities = 213/232 (91%), Positives = 221/232 (95%)
Frame = +1
Query: 1 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQR 180
LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLT Q T+TAQR
Sbjct: 183 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTTPGQITVTAQR 242
Query: 181 LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFY 360
LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD+FLP KYNCRTPISKTIMMQMFFY
Sbjct: 243 LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDVFLPAKYNCRTPISKTIMMQMFFY 302
Query: 361 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNL 540
IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL
Sbjct: 303 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNL 362
Query: 541 IQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRG 696
+QR+LRPL+S I ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG
Sbjct: 363 LQRMLRPLKSGITQLLNFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRG 414
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 443 bits (1139), Expect = e-122
Identities = 213/232 (91%), Positives = 220/232 (94%)
Frame = +1
Query: 1 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQR 180
LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T+TAQR
Sbjct: 183 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQR 242
Query: 181 LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFY 360
LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFY
Sbjct: 243 LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFY 302
Query: 361 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNL 540
IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL
Sbjct: 303 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNL 362
Query: 541 IQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRG 696
+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG
Sbjct: 363 LQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRG 414
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 443 bits (1139), Expect = e-122
Identities = 213/232 (91%), Positives = 220/232 (94%)
Frame = +1
Query: 1 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQR 180
LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T+TAQR
Sbjct: 183 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQR 242
Query: 181 LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFY 360
LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFY
Sbjct: 243 LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFY 302
Query: 361 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNL 540
IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL
Sbjct: 303 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNL 362
Query: 541 IQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRG 696
+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG
Sbjct: 363 LQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRG 414
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 443 bits (1139), Expect = e-122
Identities = 213/232 (91%), Positives = 220/232 (94%)
Frame = +1
Query: 1 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQR 180
LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T+TAQR
Sbjct: 183 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQR 242
Query: 181 LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFY 360
LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFY
Sbjct: 243 LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFY 302
Query: 361 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNL 540
IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL
Sbjct: 303 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNL 362
Query: 541 IQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRG 696
+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG
Sbjct: 363 LQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRG 414
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 443 bits (1139), Expect = e-122
Identities = 213/232 (91%), Positives = 220/232 (94%)
Frame = +1
Query: 1 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQR 180
LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T+TAQR
Sbjct: 183 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQR 242
Query: 181 LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFY 360
LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFY
Sbjct: 243 LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFY 302
Query: 361 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNL 540
IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL
Sbjct: 303 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNL 362
Query: 541 IQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRG 696
+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG
Sbjct: 363 LQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRG 414
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 443 bits (1139), Expect = e-122
Identities = 213/232 (91%), Positives = 220/232 (94%)
Frame = +1
Query: 1 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQR 180
LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T+TAQR
Sbjct: 183 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQR 242
Query: 181 LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFY 360
LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFY
Sbjct: 243 LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFY 302
Query: 361 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNL 540
IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL
Sbjct: 303 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNL 362
Query: 541 IQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRG 696
+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG
Sbjct: 363 LQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRG 414
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 443 bits (1139), Expect = e-122
Identities = 213/232 (91%), Positives = 220/232 (94%)
Frame = +1
Query: 1 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQR 180
LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T+TAQR
Sbjct: 183 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQR 242
Query: 181 LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFY 360
LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFY
Sbjct: 243 LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFY 302
Query: 361 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNL 540
IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL
Sbjct: 303 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNL 362
Query: 541 IQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRG 696
+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG
Sbjct: 363 LQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRG 414
>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 669
Score = 439 bits (1130), Expect = e-121
Identities = 212/233 (90%), Positives = 220/233 (94%)
Frame = +1
Query: 1 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQR 180
LYRLRSL+PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLTA T+TAQR
Sbjct: 183 LYRLRSLHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTAQR 242
Query: 181 LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFY 360
LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFY
Sbjct: 243 LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFY 302
Query: 361 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNL 540
IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL
Sbjct: 303 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNL 362
Query: 541 IQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGP 699
+QR+LRPL S ++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGP
Sbjct: 363 LQRILRPLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGP 415
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 372 bits (954), Expect = e-101
Identities = 184/229 (80%), Positives = 194/229 (84%)
Frame = +1
Query: 13 RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETK 192
RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTA PT+TAQRLETK
Sbjct: 186 RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPGCPTVTAQRLETK 245
Query: 193 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 372
GANHLFIFQRGNY+TPERRTF T + YVTVP IFLPE YNCRTPISKT MMQMFFYIKS
Sbjct: 246 GANHLFIFQRGNYITPERRTFATNDQYVTVPHIFLPENYNCRTPISKTTMMQMFFYIKSG 305
Query: 373 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 552
KEA+ + +QLISTKELQHYQPSEITLLVNYFEFTA+LDSHTCFEDV L +
Sbjct: 306 KEAQREGHLGQVQQLISTKELQHYQPSEITLLVNYFEFTATLDSHTCFEDV-PPKLAPKT 364
Query: 553 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGP 699
I R+LQFFRGRPSFVKLIKALDWQPITLEFPVR V T +RGP
Sbjct: 365 TPAPPLGISRILQFFRGRPSFVKLIKALDWQPITLEFPVRDVRTTVRGP 413
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 352 bits (904), Expect = 5e-95
Identities = 168/233 (72%), Positives = 195/233 (83%)
Frame = +1
Query: 1 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQR 180
LYRLRSLYP++YTLTYS+DGFMYIPGGHAGASY+HKYDQL+WLT G+L + + T+TAQR
Sbjct: 183 LYRLRSLYPEVYTLTYSDDGFMYIPGGHAGASYYHKYDQLQWLTAGYLISEST-TVTAQR 241
Query: 181 LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFY 360
LETKGANHLFIFQRG YLTPERRTFTT YVTVP+IFLP N RTPI+KT+ MQ+FFY
Sbjct: 242 LETKGANHLFIFQRGRYLTPERRTFTTATSYVTVPEIFLPSSANARTPITKTLAMQIFFY 301
Query: 361 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNL 540
IKSVKE +ERD+WAKFRQLISTKELQH+QP E TLLVNYF+F A+LDS TC ED+LSG+L
Sbjct: 302 IKSVKECRERDLWAKFRQLISTKELQHFQPDEATLLVNYFDFVANLDSATCHEDILSGSL 361
Query: 541 IQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGP 699
+ RLLRP R + Q +++FF+G P KLIKAL WQP+ LEF V TV R P
Sbjct: 362 LTRLLRPARVNWQALVRFFKGSPDHTKLIKALQWQPVLLEFKVSTVLVHKRTP 414
>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
RecName: Full=RNA replication protein; AltName: Full=176
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
protein product [Papaya mosaic virus]
gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
virus]
Length = 1547
Score = 250 bits (639), Expect = 3e-64
Identities = 124/235 (52%), Positives = 164/235 (69%), Gaps = 6/235 (2%)
Frame = +1
Query: 1 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQP----TI 168
L+RL SL+P IY L + ++ F+Y PGGHAGA+Y HKY+QLEW+ VG A++ +
Sbjct: 185 LHRLHSLHPGIYELEFHQEHFIYKPGGHAGAAYIHKYEQLEWIKVGRFKWADEKGLTHMV 244
Query: 169 TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQ 348
T+Q LETKGANHLFIFQRG +LTPE R F+T YVT+P IFLP+++N R PI KT Q
Sbjct: 245 TSQILETKGANHLFIFQRGRFLTPELRCFSTETKYVTMPPIFLPKQFNARLPIKKTTAQQ 304
Query: 349 MFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVL 528
+F Y+KSVK ERDIWAK RQL+ T ELQ Y P E+TLLVNYF A L S TCF++VL
Sbjct: 305 LFLYVKSVKNVTERDIWAKMRQLLKTSELQDYNPREVTLLVNYFLLIARLRSETCFDNVL 364
Query: 529 SGNLIQRLLRPLRS--DIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 687
SG + ++L +P + +IQ+ F G F +L++AL+W +TL +P +T + R
Sbjct: 365 SGGMFKKLFKPFIAWWEIQKHKIF--GNEEFEQLMEALEWVDVTLTYPTKTFDNR 417
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 249 bits (635), Expect = 8e-64
Identities = 122/238 (51%), Positives = 158/238 (66%), Gaps = 12/238 (5%)
Frame = +1
Query: 1 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT--AANQP---- 162
L+++ SLYPQIYTL Y E GF+Y PGGHAGASY+H+Y QL WL VG + N P
Sbjct: 183 LHKMNSLYPQIYTLQYKEKGFIYTPGGHAGASYYHEYSQLGWLDVGLIEYFEENAPDGSE 242
Query: 163 ------TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTP 324
+TAQR+ETKGANHLF+FQRG TP+ R+ T Y+TVP +FLP+K+N R P
Sbjct: 243 YLGTKWAVTAQRIETKGANHLFVFQRGRLQTPQMRSIATNTQYITVPAVFLPKKFNSRQP 302
Query: 325 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 504
+ KTI QMF YIKSVK+ ERDI++K RQLI T ELQ Y P E+ LL NYF + L S
Sbjct: 303 LKKTIAQQMFLYIKSVKQVTERDIYSKLRQLIKTSELQEYSPDELVLLANYFMLISELSS 362
Query: 505 HTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTV 678
E+VL+G+L ++L RP++S + + G+P F +L++AL W + L PVR V
Sbjct: 363 KASAEEVLAGSLFKKLFRPIKSKVTAFIHKLFGQPEFAQLLEALLWTNVDLILPVRYV 420
>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
[Allium virus X]
Length = 1701
Score = 242 bits (618), Expect = 7e-62
Identities = 120/227 (52%), Positives = 155/227 (68%), Gaps = 1/227 (0%)
Frame = +1
Query: 4 YRLRSLYPQIYTLTY-SEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQR 180
YR+ SL+P +YTL+Y E F+Y PGGH GA Y H + QL+WL VG + NQ ITAQR
Sbjct: 182 YRMASLHPNVYTLSYFGEHNFIYAPGGHHGAEYVHDFKQLDWLRVGRVRYKNQ-IITAQR 240
Query: 181 LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFY 360
+E+K ANHLF+FQRGN TP R F T + YVT+P IFLP+K+N R PI KT++MQ+F Y
Sbjct: 241 IESKAANHLFVFQRGNLNTPPLRGFGTCKKYVTLPRIFLPKKFNTRVPIEKTLVMQIFTY 300
Query: 361 IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNL 540
+K V + ERDI+AK RQLI T +LQ + SE+ +VNYF F A DS TCF D+LSG+L
Sbjct: 301 VKGVAKVTERDIYAKVRQLIKTDQLQGFDASELVHIVNYFCFIAKQDSMTCFSDILSGSL 360
Query: 541 IQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVN 681
++L +PL + + F G P F KL+KAL WQ IT+ V +N
Sbjct: 361 FKKLFQPLAAFLAECKHFIFGEPDFKKLLKALQWQDITMVVTVADIN 407
>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 231 bits (590), Expect = 1e-58
Identities = 111/229 (48%), Positives = 154/229 (67%), Gaps = 4/229 (1%)
Frame = +1
Query: 1 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT----I 168
++R+ S++P IY L + E F+Y PGGHAGASY H+Y QL+WL VG ++ +
Sbjct: 185 MHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDKKYQKHYV 244
Query: 169 TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQ 348
T+Q LETKGANHLF+FQRGN+ TP RTF +VT+P IFLP+KYN R PI KT+ Q
Sbjct: 245 TSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQ 304
Query: 349 MFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVL 528
+F YIKSVK ERDIWAK RQ+I T ELQ Y E+ L+VNY+ + LDS TCF++VL
Sbjct: 305 LFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNVL 364
Query: 529 SGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 675
+G ++++L +P+ + G+ F +L++AL+W ++L + V T
Sbjct: 365 TGGVLKKLFKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVSLSYKVET 413
>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
Length = 1541
Score = 231 bits (590), Expect = 1e-58
Identities = 111/229 (48%), Positives = 154/229 (67%), Gaps = 4/229 (1%)
Frame = +1
Query: 1 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT----I 168
++R+ S++P IY L + E F+Y PGGHAGASY H+Y QL+WL VG ++ +
Sbjct: 185 MHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDKKYQKHHV 244
Query: 169 TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQ 348
T+Q LETKGANHLF+FQRGN+ TP RTF +VT+P IFLP+KYN R PI KT+ Q
Sbjct: 245 TSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQ 304
Query: 349 MFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVL 528
+F YIKSVK ERDIWAK RQ+I T ELQ Y E+ L+VNY+ + LDS TCF++VL
Sbjct: 305 LFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNVL 364
Query: 529 SGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 675
+G ++++L +P+ + G+ F +L++AL+W ++L + V T
Sbjct: 365 TGGVLKKLFKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVSLSYKVET 413
>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 230 bits (587), Expect = 3e-58
Identities = 111/229 (48%), Positives = 153/229 (66%), Gaps = 4/229 (1%)
Frame = +1
Query: 1 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT----I 168
++R+ S++P IY L + E F+Y PGGHAGASY H+Y QL+WL VG ++ +
Sbjct: 185 MHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDKRYQKHYV 244
Query: 169 TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQ 348
T+Q LETKGANHLF+FQRGN+ TP RTF +VT+P IFLP+KYN R PI KT+ Q
Sbjct: 245 TSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQ 304
Query: 349 MFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVL 528
+F YIKSVK ERDIWAK RQ+I T ELQ Y E+ L+VNY+ + LDS TCF++VL
Sbjct: 305 LFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNVL 364
Query: 529 SGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 675
+G +++L +P+ + G+ F +L++AL+W ++L + V T
Sbjct: 365 TGGALKKLFKPIVAWWSTFKGALFGKEEFEQLMEALEWVDVSLSYKVET 413
>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
replicase [Alternanthera mosaic virus]
Length = 1541
Score = 230 bits (586), Expect = 4e-58
Identities = 111/229 (48%), Positives = 153/229 (66%), Gaps = 4/229 (1%)
Frame = +1
Query: 1 LYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT----I 168
++R+ S++P IY L + E F+Y PGGHAGASY H+Y QL+WL VG ++ +
Sbjct: 185 MHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDKKYQKHYV 244
Query: 169 TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQ 348
T+Q LETKGANHLF+FQRGN+ TP RTF +VT+P IFLP+KYN R PI KT+ Q
Sbjct: 245 TSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQ 304
Query: 349 MFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVL 528
+F YIKSVK ERDIWAK RQ+I T ELQ Y E+ L+VNY+ + LDS TCF++VL
Sbjct: 305 LFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNVL 364
Query: 529 SGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 675
+G +++L +P+ + G+ F +L++AL+W ++L + V T
Sbjct: 365 TGGALKKLFKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVSLSYRVET 413
>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
replicase [Tamus red mosaic virus]
Length = 1501
Score = 228 bits (581), Expect = 1e-57
Identities = 113/236 (47%), Positives = 151/236 (63%), Gaps = 6/236 (2%)
Frame = +1
Query: 4 YRLRSLYPQIYTLTYSE------DGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT 165
+ L S+YP IYTL Y F Y PGGH GA Y H+ QL+WL+VG LT T
Sbjct: 184 FNLASIYPNIYTLQYHRCKKGKVTHFSYAPGGHKGAEYVHELKQLDWLSVGRLTDG-VTT 242
Query: 166 ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMM 345
ITAQ++ETK ANHLFIFQRG+ +TP R F+T +VT+P IFLPEK+N R PI KT++M
Sbjct: 243 ITAQKIETKAANHLFIFQRGSLMTPCLRNFSTETKFVTLPLIFLPEKFNARQPIRKTLVM 302
Query: 346 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDV 525
QMF Y+K VK+ ERDIWAK+RQLI T++LQ + E+ L NYF F S CF+DV
Sbjct: 303 QMFLYVKGVKQVSERDIWAKWRQLIKTEDLQDFSAIELLHLTNYFVFVGKQSSINCFDDV 362
Query: 526 LSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLR 693
L G + R +P+++ + V Q G FV+L++AL+W + L+ + + + R
Sbjct: 363 LKGGFLTRWFKPIKNWFEMVRQKIFGEAEFVRLVRALEWTEVDLKLDTKNYDFKRR 418
>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
Length = 1670
Score = 226 bits (575), Expect = 7e-57
Identities = 114/235 (48%), Positives = 151/235 (64%), Gaps = 7/235 (2%)
Frame = +1
Query: 1 LYRLRSLYPQIYTLTYSEDG-------FMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQ 159
LY L SLYP +Y+L+Y + F Y PGGH GA Y H+ Q++WL GH+ +
Sbjct: 183 LYGLTSLYPNVYSLSYHKPSKFRRKALFSYAPGGHKGAEYVHELKQIDWLRFGHIIDG-K 241
Query: 160 PTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTI 339
ITAQ+LETK ANHLFI++RG Y TPE R F T YVT+P IFLP ++N R PI KT+
Sbjct: 242 VCITAQKLETKAANHLFIYKRGKYFTPEIRNFNTQTKYVTLPKIFLPAQFNHRVPIKKTL 301
Query: 340 MMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFE 519
+MQ+F Y+K+V AKERDIWAK RQLI T++LQ Y P+EI LVNYF F A + T F+
Sbjct: 302 VMQLFMYVKTVSAAKERDIWAKIRQLIKTEDLQEYSPTEIVHLVNYFLFIAKTSAVTSFD 361
Query: 520 DVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNT 684
+L G++I+++ RP+ + + Q G F +L++AL W I L V V T
Sbjct: 362 SMLDGSIIKKIFRPVLAWFKSGYQRIFGLSEFNQLLEALSWDEIDLTLDVLPVKT 416