BLASTX nr result
ID: Ephedra26_contig00013446
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00013446
(1117 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 578 e-162
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 541 e-151
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a... 538 e-150
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 537 e-150
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 536 e-150
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 536 e-150
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 536 e-150
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 536 e-150
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 534 e-149
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 471 e-130
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 402 e-109
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2... 269 2e-69
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 268 4e-69
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A... 256 2e-65
gb|ACS28228.1| replicase [Alternanthera mosaic virus] 251 5e-64
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai... 251 5e-64
gb|ACS28233.1| replicase [Alternanthera mosaic virus] 250 8e-64
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082... 249 1e-63
ref|NP_077079.1| replicase [Clover yellow mosaic virus] 246 1e-62
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548... 244 3e-62
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 578 bits (1489), Expect = e-162
Identities = 280/330 (84%), Positives = 297/330 (90%)
Frame = +3
Query: 3 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT+GHL
Sbjct: 172 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTIGHLQ 231
Query: 183 APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
APNQPT+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT+ YVTVPDIFLPEKYNCRTPI
Sbjct: 232 APNQPTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTDPYVTVPDIFLPEKYNCRTPI 291
Query: 363 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEF ASLDSH
Sbjct: 292 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFAASLDSH 351
Query: 543 TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
TCFEDVLSGNL+QRLLRPLR+D+QR+L FFRGRPSFVKLIKALDWQPITLEFPVR VNTR
Sbjct: 352 TCFEDVLSGNLLQRLLRPLRADMQRILHFFRGRPSFVKLIKALDWQPITLEFPVRRVNTR 411
Query: 723 LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
LRGPPGF +PFT+P PVNPDDA+T +FREF + + LE S E+ +HTSL
Sbjct: 412 LRGPPGFLSPFTRPQPVNPDDAETTESFREFIQPLNPSPTATVTEMLENSTESDVTHTSL 471
Query: 903 KVGHADLSTEQLRALHELGNTRLGGPLLPK 992
KV LS EQL ALHELGN+R GGP+LPK
Sbjct: 472 KVVPQSLSPEQLSALHELGNSRCGGPMLPK 501
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 541 bits (1394), Expect = e-151
Identities = 267/330 (80%), Positives = 283/330 (85%)
Frame = +3
Query: 3 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLT
Sbjct: 172 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLT 231
Query: 183 APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD+FLP KYNCRTPI
Sbjct: 232 TPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDVFLPAKYNCRTPI 291
Query: 363 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH
Sbjct: 292 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 351
Query: 543 TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
TCFED+LSGNL+QR+LRPL+S I ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT
Sbjct: 352 TCFEDILSGNLLQRMLRPLKSGITQLLNFFRGRPSFVKLIKALDWQPITLEFPVRKVNTH 411
Query: 723 LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
LRG PGF +PF +P PVNPDDA+T ++F+ F +LE AE H SL
Sbjct: 412 LRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATITAEA-----ALEQQAETPDEHQSL 466
Query: 903 KVGHADLSTEQLRALHELGNTRLGGPLLPK 992
+ L QL ALHELGNTR GGPLLPK
Sbjct: 467 SLKCPTLPEHQLWALHELGNTRCGGPLLPK 496
>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 669
Score = 538 bits (1386), Expect = e-150
Identities = 265/330 (80%), Positives = 284/330 (86%)
Frame = +3
Query: 3 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
LYATLVLPPEALYRLRSL+PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLT
Sbjct: 172 LYATLVLPPEALYRLRSLHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLT 231
Query: 183 APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
AP T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPI
Sbjct: 232 APGLLTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPI 291
Query: 363 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH
Sbjct: 292 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 351
Query: 543 TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
TCFED+LSGNL+QR+LRPL S ++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT
Sbjct: 352 TCFEDILSGNLLQRILRPLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTL 411
Query: 723 LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
LRGPPGF +PFT+P PVNPDDA+T +F+ F + +LE AE H SL
Sbjct: 412 LRGPPGFDSPFTRPQPVNPDDAETTHSFQAF-----CQAAAAVETTLEQQAETPDEHQSL 466
Query: 903 KVGHADLSTEQLRALHELGNTRLGGPLLPK 992
++ LS QL ALH+LGN R GGPLLP+
Sbjct: 467 RLDCPTLSEHQLWALHKLGNARCGGPLLPQ 496
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 537 bits (1383), Expect = e-150
Identities = 264/330 (80%), Positives = 282/330 (85%)
Frame = +3
Query: 3 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT
Sbjct: 172 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLT 231
Query: 183 APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPI
Sbjct: 232 TPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPI 291
Query: 363 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH
Sbjct: 292 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 351
Query: 543 TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
TCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT
Sbjct: 352 TCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTH 411
Query: 723 LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
LRG PGF +PF +P PVNPDDA+T ++F+ F + +L +E H SL
Sbjct: 412 LRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEXTLAQQSETPDEHQSL 466
Query: 903 KVGHADLSTEQLRALHELGNTRLGGPLLPK 992
+ + L QL ALHELGN R GGPLLPK
Sbjct: 467 SLKCSTLPEHQLWALHELGNARCGGPLLPK 496
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 536 bits (1382), Expect = e-150
Identities = 264/330 (80%), Positives = 282/330 (85%)
Frame = +3
Query: 3 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT
Sbjct: 172 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLT 231
Query: 183 APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPI
Sbjct: 232 TPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPI 291
Query: 363 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH
Sbjct: 292 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 351
Query: 543 TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
TCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT
Sbjct: 352 TCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTH 411
Query: 723 LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
LRG PGF +PF +P PVNPDDA+T ++F+ F + +L +E H SL
Sbjct: 412 LRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEATLAQQSETPDEHQSL 466
Query: 903 KVGHADLSTEQLRALHELGNTRLGGPLLPK 992
+ + L QL ALHELGN R GGPLLPK
Sbjct: 467 SLKCSTLPEHQLWALHELGNARCGGPLLPK 496
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 536 bits (1380), Expect = e-150
Identities = 264/330 (80%), Positives = 281/330 (85%)
Frame = +3
Query: 3 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT
Sbjct: 172 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLT 231
Query: 183 APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPI
Sbjct: 232 TPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPI 291
Query: 363 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH
Sbjct: 292 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 351
Query: 543 TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
TCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT
Sbjct: 352 TCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTH 411
Query: 723 LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
LRG PGF +PF +P PVNPDDA+T ++F+ F + +L +E H SL
Sbjct: 412 LRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEATLAQQSETPDEHQSL 466
Query: 903 KVGHADLSTEQLRALHELGNTRLGGPLLPK 992
+ L QL ALHELGN R GGPLLPK
Sbjct: 467 SLKCPTLPEHQLWALHELGNARCGGPLLPK 496
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 536 bits (1380), Expect = e-150
Identities = 264/330 (80%), Positives = 281/330 (85%)
Frame = +3
Query: 3 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT
Sbjct: 172 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLT 231
Query: 183 APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPI
Sbjct: 232 TPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPI 291
Query: 363 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH
Sbjct: 292 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 351
Query: 543 TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
TCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT
Sbjct: 352 TCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTH 411
Query: 723 LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
LRG PGF +PF +P PVNPDDA+T ++F+ F + +L +E H SL
Sbjct: 412 LRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEATLAQQSETPDEHQSL 466
Query: 903 KVGHADLSTEQLRALHELGNTRLGGPLLPK 992
+ L QL ALHELGN R GGPLLPK
Sbjct: 467 SLKCPTLPEHQLWALHELGNARCGGPLLPK 496
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 536 bits (1380), Expect = e-150
Identities = 264/330 (80%), Positives = 281/330 (85%)
Frame = +3
Query: 3 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT
Sbjct: 172 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLT 231
Query: 183 APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPI
Sbjct: 232 TPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPI 291
Query: 363 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH
Sbjct: 292 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 351
Query: 543 TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
TCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT
Sbjct: 352 TCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTH 411
Query: 723 LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
LRG PGF +PF +P PVNPDDA+T ++F+ F + +L +E H SL
Sbjct: 412 LRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEATLAQQSETPDEHQSL 466
Query: 903 KVGHADLSTEQLRALHELGNTRLGGPLLPK 992
+ L QL ALHELGN R GGPLLPK
Sbjct: 467 SLKCPTLPEHQLWALHELGNARCGGPLLPK 496
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 534 bits (1376), Expect = e-149
Identities = 263/330 (79%), Positives = 281/330 (85%)
Frame = +3
Query: 3 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT
Sbjct: 172 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLT 231
Query: 183 APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPI
Sbjct: 232 TPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPI 291
Query: 363 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH
Sbjct: 292 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 351
Query: 543 TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
TCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT
Sbjct: 352 TCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTH 411
Query: 723 LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
LRG PGF +PF +P PVNPDDA+T ++F+ F + +L +E H SL
Sbjct: 412 LRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEATLAQQSETPDEHQSL 466
Query: 903 KVGHADLSTEQLRALHELGNTRLGGPLLPK 992
+ + L QL ALHELGN R G PLLPK
Sbjct: 467 SLKCSTLPEHQLWALHELGNARCGAPLLPK 496
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 471 bits (1212), Expect = e-130
Identities = 244/367 (66%), Positives = 269/367 (73%)
Frame = +3
Query: 3 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
LYATLVLPPE RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT
Sbjct: 172 LYATLVLPPEPSTS-RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 230
Query: 183 APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
AP PT+TAQRLETKGANHLFIFQRGNY+TPERRTF T + YVTVP IFLPE YNCRTPI
Sbjct: 231 APGCPTVTAQRLETKGANHLFIFQRGNYITPERRTFATNDQYVTVPHIFLPENYNCRTPI 290
Query: 363 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
SKT MMQMFFYIKS KEA+ + +QLISTKELQHYQPSEITLLVNYFEFTA+LDSH
Sbjct: 291 SKTTMMQMFFYIKSGKEAQREGHLGQVQQLISTKELQHYQPSEITLLVNYFEFTATLDSH 350
Query: 543 TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
TCFEDV L + I R+LQFFRGRPSFVKLIKALDWQPITLEFPVR V T
Sbjct: 351 TCFEDV-PPKLAPKTTPAPPLGISRILQFFRGRPSFVKLIKALDWQPITLEFPVRDVRTT 409
Query: 723 LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
+RGPPGF NPFT+P PVNP+DAD F++F + LE SAE+ HT L
Sbjct: 410 VRGPPGFKNPFTQPQPVNPEDADISSRFQDFSRATNSTPKPTVEAVLEASAESPDHHTQL 469
Query: 903 KVGHADLSTEQLRALHELGNTRLGGPLLPKITPDEQDSEXXXXXXXXXXXTQASASLNQG 1082
KV + LS QL A+H LG++R GGPLLP++T E +QAS + +
Sbjct: 470 KVLCSALSEGQLEAIHALGHSRCGGPLLPELTAKSTPVEQCPDLPPCPTKSQASPASSNP 529
Query: 1083 DHTDQAP 1103
D P
Sbjct: 530 SGPDAQP 536
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 402 bits (1032), Expect = e-109
Identities = 205/329 (62%), Positives = 241/329 (73%)
Frame = +3
Query: 3 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
LYAT+VLPPEALYRLRSLYP++YTLTYS+DGFMYIPGGHAGASY+HKYDQL+WLT G+L
Sbjct: 172 LYATMVLPPEALYRLRSLYPEVYTLTYSDDGFMYIPGGHAGASYYHKYDQLQWLTAGYLI 231
Query: 183 APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
+ + T+TAQRLETKGANHLFIFQRG YLTPERRTFTT YVTVP+IFLP N RTPI
Sbjct: 232 SEST-TVTAQRLETKGANHLFIFQRGRYLTPERRTFTTATSYVTVPEIFLPSSANARTPI 290
Query: 363 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
+KT+ MQ+FFYIKSVKE +ERD+WAKFRQLISTKELQH+QP E TLLVNYF+F A+LDS
Sbjct: 291 TKTLAMQIFFYIKSVKECRERDLWAKFRQLISTKELQHFQPDEATLLVNYFDFVANLDSA 350
Query: 543 TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
TC ED+LSG+L+ RLLRP R + Q +++FF+G P KLIKAL WQP+ LEF V TV
Sbjct: 351 TCHEDILSGSLLTRLLRPARVNWQALVRFFKGSPDHTKLIKALQWQPVLLEFKVSTVLVH 410
Query: 723 LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
R PPGF +P +P PVN DA T A ++ SL
Sbjct: 411 KRTPPGFRHPLCRPLPVNEVDALTTAA---------------------------CANQSL 443
Query: 903 KVGHADLSTEQLRALHELGNTRLGGPLLP 989
+ +LS +QL ALH LG+ R G LP
Sbjct: 444 PLD--NLSEDQLEALHVLGSLRTDGESLP 470
>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
RecName: Full=RNA replication protein; AltName: Full=176
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
protein product [Papaya mosaic virus]
gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
virus]
Length = 1547
Score = 269 bits (687), Expect = 2e-69
Identities = 133/246 (54%), Positives = 174/246 (70%), Gaps = 6/246 (2%)
Frame = +3
Query: 3 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
LYAT+VLPPEAL+RL SL+P IY L + ++ F+Y PGGHAGA+Y HKY+QLEW+ VG
Sbjct: 174 LYATMVLPPEALHRLHSLHPGIYELEFHQEHFIYKPGGHAGAAYIHKYEQLEWIKVGRFK 233
Query: 183 APNQP----TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 350
++ +T+Q LETKGANHLFIFQRG +LTPE R F+T YVT+P IFLP+++N
Sbjct: 234 WADEKGLTHMVTSQILETKGANHLFIFQRGRFLTPELRCFSTETKYVTMPPIFLPKQFNA 293
Query: 351 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 530
R PI KT Q+F Y+KSVK ERDIWAK RQL+ T ELQ Y P E+TLLVNYF A
Sbjct: 294 RLPIKKTTAQQLFLYVKSVKNVTERDIWAKMRQLLKTSELQDYNPREVTLLVNYFLLIAR 353
Query: 531 LDSHTCFEDVLSGNLIQRLLRPLRS--DIQRVLQFFRGRPSFVKLIKALDWQPITLEFPV 704
L S TCF++VLSG + ++L +P + +IQ+ F G F +L++AL+W +TL +P
Sbjct: 354 LRSETCFDNVLSGGMFKKLFKPFIAWWEIQKHKIF--GNEEFEQLMEALEWVDVTLTYPT 411
Query: 705 RTVNTR 722
+T + R
Sbjct: 412 KTFDNR 417
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 268 bits (684), Expect = 4e-69
Identities = 131/248 (52%), Positives = 168/248 (67%), Gaps = 12/248 (4%)
Frame = +3
Query: 6 YATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT- 182
YAT+VLPPEAL+++ SLYPQIYTL Y E GF+Y PGGHAGASY+H+Y QL WL VG +
Sbjct: 173 YATMVLPPEALHKMNSLYPQIYTLQYKEKGFIYTPGGHAGASYYHEYSQLGWLDVGLIEY 232
Query: 183 -APNQP----------TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIF 329
N P +TAQR+ETKGANHLF+FQRG TP+ R+ T Y+TVP +F
Sbjct: 233 FEENAPDGSEYLGTKWAVTAQRIETKGANHLFVFQRGRLQTPQMRSIATNTQYITVPAVF 292
Query: 330 LPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVN 509
LP+K+N R P+ KTI QMF YIKSVK+ ERDI++K RQLI T ELQ Y P E+ LL N
Sbjct: 293 LPKKFNSRQPLKKTIAQQMFLYIKSVKQVTERDIYSKLRQLIKTSELQEYSPDELVLLAN 352
Query: 510 YFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPIT 689
YF + L S E+VL+G+L ++L RP++S + + G+P F +L++AL W +
Sbjct: 353 YFMLISELSSKASAEEVLAGSLFKKLFRPIKSKVTAFIHKLFGQPEFAQLLEALLWTNVD 412
Query: 690 LEFPVRTV 713
L PVR V
Sbjct: 413 LILPVRYV 420
>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
[Allium virus X]
Length = 1701
Score = 256 bits (653), Expect = 2e-65
Identities = 128/239 (53%), Positives = 164/239 (68%), Gaps = 1/239 (0%)
Frame = +3
Query: 3 LYATLVLPPEALYRLRSLYPQIYTLTY-SEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL 179
L AT+VLP EA YR+ SL+P +YTL+Y E F+Y PGGH GA Y H + QL+WL VG +
Sbjct: 170 LVATMVLPAEAKYRMASLHPNVYTLSYFGEHNFIYAPGGHHGAEYVHDFKQLDWLRVGRV 229
Query: 180 TAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTP 359
NQ ITAQR+E+K ANHLF+FQRGN TP R F T + YVT+P IFLP+K+N R P
Sbjct: 230 RYKNQ-IITAQRIESKAANHLFVFQRGNLNTPPLRGFGTCKKYVTLPRIFLPKKFNTRVP 288
Query: 360 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 539
I KT++MQ+F Y+K V + ERDI+AK RQLI T +LQ + SE+ +VNYF F A DS
Sbjct: 289 IEKTLVMQIFTYVKGVAKVTERDIYAKVRQLIKTDQLQGFDASELVHIVNYFCFIAKQDS 348
Query: 540 HTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVN 716
TCF D+LSG+L ++L +PL + + F G P F KL+KAL WQ IT+ V +N
Sbjct: 349 MTCFSDILSGSLFKKLFQPLAAFLAECKHFIFGEPDFKKLLKALQWQDITMVVTVADIN 407
>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 251 bits (640), Expect = 5e-64
Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 4/240 (1%)
Frame = +3
Query: 3 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
LYAT+VLPPEA++R+ S++P IY L + E F+Y PGGHAGASY H+Y QL+WL VG
Sbjct: 174 LYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEYSQLQWLKVGKFE 233
Query: 183 APNQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 350
++ +T+Q LETKGANHLF+FQRGN+ TP RTF +VT+P IFLP+KYN
Sbjct: 234 WCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNA 293
Query: 351 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 530
R PI KT+ Q+F YIKSVK ERDIWAK RQ+I T ELQ Y E+ L+VNY+ +
Sbjct: 294 RYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLISK 353
Query: 531 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 710
LDS TCF++VL+G ++++L +P+ + G+ F +L++AL+W ++L + V T
Sbjct: 354 LDSVTCFDNVLTGGVLKKLFKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVSLSYKVET 413
>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
Length = 1541
Score = 251 bits (640), Expect = 5e-64
Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 4/240 (1%)
Frame = +3
Query: 3 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
LYAT+VLPPEA++R+ S++P IY L + E F+Y PGGHAGASY H+Y QL+WL VG
Sbjct: 174 LYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEYSQLQWLKVGKFE 233
Query: 183 APNQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 350
++ +T+Q LETKGANHLF+FQRGN+ TP RTF +VT+P IFLP+KYN
Sbjct: 234 WCDKKYQKHHVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNA 293
Query: 351 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 530
R PI KT+ Q+F YIKSVK ERDIWAK RQ+I T ELQ Y E+ L+VNY+ +
Sbjct: 294 RYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLISK 353
Query: 531 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 710
LDS TCF++VL+G ++++L +P+ + G+ F +L++AL+W ++L + V T
Sbjct: 354 LDSVTCFDNVLTGGVLKKLFKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVSLSYKVET 413
>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 250 bits (638), Expect = 8e-64
Identities = 121/240 (50%), Positives = 163/240 (67%), Gaps = 4/240 (1%)
Frame = +3
Query: 3 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
LYAT+VLPPEA++R+ S++P IY L + E F+Y PGGHAGASY H+Y QL+WL VG
Sbjct: 174 LYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEYSQLQWLKVGKFE 233
Query: 183 ----APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 350
+ +T+Q LETKGANHLF+FQRGN+ TP RTF +VT+P IFLP+KYN
Sbjct: 234 WCDKRYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNA 293
Query: 351 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 530
R PI KT+ Q+F YIKSVK ERDIWAK RQ+I T ELQ Y E+ L+VNY+ +
Sbjct: 294 RYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLISK 353
Query: 531 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 710
LDS TCF++VL+G +++L +P+ + G+ F +L++AL+W ++L + V T
Sbjct: 354 LDSVTCFDNVLTGGALKKLFKPIVAWWSTFKGALFGKEEFEQLMEALEWVDVSLSYKVET 413
>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
replicase [Alternanthera mosaic virus]
Length = 1541
Score = 249 bits (636), Expect = 1e-63
Identities = 121/240 (50%), Positives = 164/240 (68%), Gaps = 4/240 (1%)
Frame = +3
Query: 3 LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
LYAT+VLPPEA++R+ S++P IY L + E F+Y PGGHAGASY H+Y QL+WL VG
Sbjct: 174 LYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEYSQLQWLKVGKFE 233
Query: 183 APNQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 350
++ +T+Q LETKGANHLF+FQRGN+ TP RTF +VT+P IFLP+KYN
Sbjct: 234 WCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNA 293
Query: 351 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 530
R PI KT+ Q+F YIKSVK ERDIWAK RQ+I T ELQ Y E+ L+VNY+ +
Sbjct: 294 RYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLISK 353
Query: 531 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 710
LDS TCF++VL+G +++L +P+ + G+ F +L++AL+W ++L + V T
Sbjct: 354 LDSVTCFDNVLTGGALKKLFKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVSLSYRVET 413
>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
Length = 1670
Score = 246 bits (628), Expect = 1e-62
Identities = 127/262 (48%), Positives = 169/262 (64%), Gaps = 10/262 (3%)
Frame = +3
Query: 9 ATLVLPPEALYRLRSLYPQIYTLTYSEDG-------FMYIPGGHAGASYFHKYDQLEWLT 167
AT+VLP EALY L SLYP +Y+L+Y + F Y PGGH GA Y H+ Q++WL
Sbjct: 174 ATMVLPTEALYGLTSLYPNVYSLSYHKPSKFRRKALFSYAPGGHKGAEYVHELKQIDWLR 233
Query: 168 VGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 347
GH+ + ITAQ+LETK ANHLFI++RG Y TPE R F T YVT+P IFLP ++N
Sbjct: 234 FGHII-DGKVCITAQKLETKAANHLFIYKRGKYFTPEIRNFNTQTKYVTLPKIFLPAQFN 292
Query: 348 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 527
R PI KT++MQ+F Y+K+V AKERDIWAK RQLI T++LQ Y P+EI LVNYF F A
Sbjct: 293 HRVPIKKTLVMQLFMYVKTVSAAKERDIWAKIRQLIKTEDLQEYSPTEIVHLVNYFLFIA 352
Query: 528 SLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLE---F 698
+ T F+ +L G++I+++ RP+ + + Q G F +L++AL W I L
Sbjct: 353 KTSAVTSFDSMLDGSIIKKIFRPVLAWFKSGYQRIFGLSEFNQLLEALSWDEIDLTLDVL 412
Query: 699 PVRTVNTRLRGPPGFHNPFTKP 764
PV+T + R G ++PFT P
Sbjct: 413 PVKTHDWRRMGVADSNDPFTYP 434
>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
replicase [Tamus red mosaic virus]
Length = 1501
Score = 244 bits (624), Expect = 3e-62
Identities = 126/269 (46%), Positives = 168/269 (62%), Gaps = 6/269 (2%)
Frame = +3
Query: 3 LYATLVLPPEALYRLRSLYPQIYTLTYSE------DGFMYIPGGHAGASYFHKYDQLEWL 164
L AT+VLP EA + L S+YP IYTL Y F Y PGGH GA Y H+ QL+WL
Sbjct: 172 LVATMVLPAEAKFNLASIYPNIYTLQYHRCKKGKVTHFSYAPGGHKGAEYVHELKQLDWL 231
Query: 165 TVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKY 344
+VG LT TITAQ++ETK ANHLFIFQRG+ +TP R F+T +VT+P IFLPEK+
Sbjct: 232 SVGRLT-DGVTTITAQKIETKAANHLFIFQRGSLMTPCLRNFSTETKFVTLPLIFLPEKF 290
Query: 345 NCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 524
N R PI KT++MQMF Y+K VK+ ERDIWAK+RQLI T++LQ + E+ L NYF F
Sbjct: 291 NARQPIRKTLVMQMFLYVKGVKQVSERDIWAKWRQLIKTEDLQDFSAIELLHLTNYFVFV 350
Query: 525 ASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPV 704
S CF+DVL G + R +P+++ + V Q G FV+L++AL+W + L+
Sbjct: 351 GKQSSINCFDDVLKGGFLTRWFKPIKNWFEMVRQKIFGEAEFVRLVRALEWTEVDLKLDT 410
Query: 705 RTVNTRLRGPPGFHNPFTKPHPVNPDDAD 791
+ + + R GF + PDD++
Sbjct: 411 KNYDFKRREGNGFLS--LSKVAAGPDDSE 437