BLASTX nr result

ID: Ephedra26_contig00013446 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00013446
         (1117 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 578   e-162
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   541   e-151
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a...   538   e-150
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   537   e-150
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   536   e-150
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   536   e-150
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   536   e-150
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   536   e-150
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   534   e-149
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   471   e-130
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   402   e-109
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   269   2e-69
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   268   4e-69
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   256   2e-65
gb|ACS28228.1| replicase [Alternanthera mosaic virus]                 251   5e-64
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   251   5e-64
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 250   8e-64
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   249   1e-63
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               246   1e-62
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548...   244   3e-62

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  578 bits (1489), Expect = e-162
 Identities = 280/330 (84%), Positives = 297/330 (90%)
 Frame = +3

Query: 3    LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
            LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT+GHL 
Sbjct: 172  LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTIGHLQ 231

Query: 183  APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
            APNQPT+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT+ YVTVPDIFLPEKYNCRTPI
Sbjct: 232  APNQPTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTDPYVTVPDIFLPEKYNCRTPI 291

Query: 363  SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
            SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEF ASLDSH
Sbjct: 292  SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFAASLDSH 351

Query: 543  TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
            TCFEDVLSGNL+QRLLRPLR+D+QR+L FFRGRPSFVKLIKALDWQPITLEFPVR VNTR
Sbjct: 352  TCFEDVLSGNLLQRLLRPLRADMQRILHFFRGRPSFVKLIKALDWQPITLEFPVRRVNTR 411

Query: 723  LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
            LRGPPGF +PFT+P PVNPDDA+T  +FREF           + + LE S E+  +HTSL
Sbjct: 412  LRGPPGFLSPFTRPQPVNPDDAETTESFREFIQPLNPSPTATVTEMLENSTESDVTHTSL 471

Query: 903  KVGHADLSTEQLRALHELGNTRLGGPLLPK 992
            KV    LS EQL ALHELGN+R GGP+LPK
Sbjct: 472  KVVPQSLSPEQLSALHELGNSRCGGPMLPK 501


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  541 bits (1394), Expect = e-151
 Identities = 267/330 (80%), Positives = 283/330 (85%)
 Frame = +3

Query: 3    LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
            LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLT
Sbjct: 172  LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLT 231

Query: 183  APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
             P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD+FLP KYNCRTPI
Sbjct: 232  TPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDVFLPAKYNCRTPI 291

Query: 363  SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
            SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH
Sbjct: 292  SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 351

Query: 543  TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
            TCFED+LSGNL+QR+LRPL+S I ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT 
Sbjct: 352  TCFEDILSGNLLQRMLRPLKSGITQLLNFFRGRPSFVKLIKALDWQPITLEFPVRKVNTH 411

Query: 723  LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
            LRG PGF +PF +P PVNPDDA+T ++F+ F              +LE  AE    H SL
Sbjct: 412  LRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATITAEA-----ALEQQAETPDEHQSL 466

Query: 903  KVGHADLSTEQLRALHELGNTRLGGPLLPK 992
             +    L   QL ALHELGNTR GGPLLPK
Sbjct: 467  SLKCPTLPEHQLWALHELGNTRCGGPLLPK 496


>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 669

 Score =  538 bits (1386), Expect = e-150
 Identities = 265/330 (80%), Positives = 284/330 (86%)
 Frame = +3

Query: 3    LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
            LYATLVLPPEALYRLRSL+PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLT
Sbjct: 172  LYATLVLPPEALYRLRSLHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLT 231

Query: 183  APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
            AP   T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPI
Sbjct: 232  APGLLTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPI 291

Query: 363  SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
            SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH
Sbjct: 292  SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 351

Query: 543  TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
            TCFED+LSGNL+QR+LRPL S   ++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT 
Sbjct: 352  TCFEDILSGNLLQRILRPLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTL 411

Query: 723  LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
            LRGPPGF +PFT+P PVNPDDA+T  +F+ F           +  +LE  AE    H SL
Sbjct: 412  LRGPPGFDSPFTRPQPVNPDDAETTHSFQAF-----CQAAAAVETTLEQQAETPDEHQSL 466

Query: 903  KVGHADLSTEQLRALHELGNTRLGGPLLPK 992
            ++    LS  QL ALH+LGN R GGPLLP+
Sbjct: 467  RLDCPTLSEHQLWALHKLGNARCGGPLLPQ 496


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  537 bits (1383), Expect = e-150
 Identities = 264/330 (80%), Positives = 282/330 (85%)
 Frame = +3

Query: 3    LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
            LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT
Sbjct: 172  LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLT 231

Query: 183  APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
             P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPI
Sbjct: 232  TPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPI 291

Query: 363  SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
            SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH
Sbjct: 292  SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 351

Query: 543  TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
            TCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT 
Sbjct: 352  TCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTH 411

Query: 723  LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
            LRG PGF +PF +P PVNPDDA+T ++F+ F           +  +L   +E    H SL
Sbjct: 412  LRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEXTLAQQSETPDEHQSL 466

Query: 903  KVGHADLSTEQLRALHELGNTRLGGPLLPK 992
             +  + L   QL ALHELGN R GGPLLPK
Sbjct: 467  SLKCSTLPEHQLWALHELGNARCGGPLLPK 496


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  536 bits (1382), Expect = e-150
 Identities = 264/330 (80%), Positives = 282/330 (85%)
 Frame = +3

Query: 3    LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
            LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT
Sbjct: 172  LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLT 231

Query: 183  APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
             P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPI
Sbjct: 232  TPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPI 291

Query: 363  SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
            SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH
Sbjct: 292  SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 351

Query: 543  TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
            TCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT 
Sbjct: 352  TCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTH 411

Query: 723  LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
            LRG PGF +PF +P PVNPDDA+T ++F+ F           +  +L   +E    H SL
Sbjct: 412  LRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEATLAQQSETPDEHQSL 466

Query: 903  KVGHADLSTEQLRALHELGNTRLGGPLLPK 992
             +  + L   QL ALHELGN R GGPLLPK
Sbjct: 467  SLKCSTLPEHQLWALHELGNARCGGPLLPK 496


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  536 bits (1380), Expect = e-150
 Identities = 264/330 (80%), Positives = 281/330 (85%)
 Frame = +3

Query: 3    LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
            LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT
Sbjct: 172  LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLT 231

Query: 183  APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
             P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPI
Sbjct: 232  TPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPI 291

Query: 363  SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
            SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH
Sbjct: 292  SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 351

Query: 543  TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
            TCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT 
Sbjct: 352  TCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTH 411

Query: 723  LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
            LRG PGF +PF +P PVNPDDA+T ++F+ F           +  +L   +E    H SL
Sbjct: 412  LRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEATLAQQSETPDEHQSL 466

Query: 903  KVGHADLSTEQLRALHELGNTRLGGPLLPK 992
             +    L   QL ALHELGN R GGPLLPK
Sbjct: 467  SLKCPTLPEHQLWALHELGNARCGGPLLPK 496


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  536 bits (1380), Expect = e-150
 Identities = 264/330 (80%), Positives = 281/330 (85%)
 Frame = +3

Query: 3    LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
            LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT
Sbjct: 172  LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLT 231

Query: 183  APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
             P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPI
Sbjct: 232  TPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPI 291

Query: 363  SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
            SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH
Sbjct: 292  SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 351

Query: 543  TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
            TCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT 
Sbjct: 352  TCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTH 411

Query: 723  LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
            LRG PGF +PF +P PVNPDDA+T ++F+ F           +  +L   +E    H SL
Sbjct: 412  LRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEATLAQQSETPDEHQSL 466

Query: 903  KVGHADLSTEQLRALHELGNTRLGGPLLPK 992
             +    L   QL ALHELGN R GGPLLPK
Sbjct: 467  SLKCPTLPEHQLWALHELGNARCGGPLLPK 496


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  536 bits (1380), Expect = e-150
 Identities = 264/330 (80%), Positives = 281/330 (85%)
 Frame = +3

Query: 3    LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
            LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT
Sbjct: 172  LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLT 231

Query: 183  APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
             P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPI
Sbjct: 232  TPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPI 291

Query: 363  SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
            SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH
Sbjct: 292  SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 351

Query: 543  TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
            TCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT 
Sbjct: 352  TCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTH 411

Query: 723  LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
            LRG PGF +PF +P PVNPDDA+T ++F+ F           +  +L   +E    H SL
Sbjct: 412  LRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEATLAQQSETPDEHQSL 466

Query: 903  KVGHADLSTEQLRALHELGNTRLGGPLLPK 992
             +    L   QL ALHELGN R GGPLLPK
Sbjct: 467  SLKCPTLPEHQLWALHELGNARCGGPLLPK 496


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  534 bits (1376), Expect = e-149
 Identities = 263/330 (79%), Positives = 281/330 (85%)
 Frame = +3

Query: 3    LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
            LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT
Sbjct: 172  LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLT 231

Query: 183  APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
             P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPI
Sbjct: 232  TPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPI 291

Query: 363  SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
            SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH
Sbjct: 292  SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 351

Query: 543  TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
            TCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT 
Sbjct: 352  TCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTH 411

Query: 723  LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
            LRG PGF +PF +P PVNPDDA+T ++F+ F           +  +L   +E    H SL
Sbjct: 412  LRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEATLAQQSETPDEHQSL 466

Query: 903  KVGHADLSTEQLRALHELGNTRLGGPLLPK 992
             +  + L   QL ALHELGN R G PLLPK
Sbjct: 467  SLKCSTLPEHQLWALHELGNARCGAPLLPK 496


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  471 bits (1212), Expect = e-130
 Identities = 244/367 (66%), Positives = 269/367 (73%)
 Frame = +3

Query: 3    LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
            LYATLVLPPE     RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT
Sbjct: 172  LYATLVLPPEPSTS-RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 230

Query: 183  APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
            AP  PT+TAQRLETKGANHLFIFQRGNY+TPERRTF T + YVTVP IFLPE YNCRTPI
Sbjct: 231  APGCPTVTAQRLETKGANHLFIFQRGNYITPERRTFATNDQYVTVPHIFLPENYNCRTPI 290

Query: 363  SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
            SKT MMQMFFYIKS KEA+      + +QLISTKELQHYQPSEITLLVNYFEFTA+LDSH
Sbjct: 291  SKTTMMQMFFYIKSGKEAQREGHLGQVQQLISTKELQHYQPSEITLLVNYFEFTATLDSH 350

Query: 543  TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
            TCFEDV    L  +        I R+LQFFRGRPSFVKLIKALDWQPITLEFPVR V T 
Sbjct: 351  TCFEDV-PPKLAPKTTPAPPLGISRILQFFRGRPSFVKLIKALDWQPITLEFPVRDVRTT 409

Query: 723  LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
            +RGPPGF NPFT+P PVNP+DAD    F++F           +   LE SAE+   HT L
Sbjct: 410  VRGPPGFKNPFTQPQPVNPEDADISSRFQDFSRATNSTPKPTVEAVLEASAESPDHHTQL 469

Query: 903  KVGHADLSTEQLRALHELGNTRLGGPLLPKITPDEQDSEXXXXXXXXXXXTQASASLNQG 1082
            KV  + LS  QL A+H LG++R GGPLLP++T      E           +QAS + +  
Sbjct: 470  KVLCSALSEGQLEAIHALGHSRCGGPLLPELTAKSTPVEQCPDLPPCPTKSQASPASSNP 529

Query: 1083 DHTDQAP 1103
               D  P
Sbjct: 530  SGPDAQP 536


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  402 bits (1032), Expect = e-109
 Identities = 205/329 (62%), Positives = 241/329 (73%)
 Frame = +3

Query: 3    LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
            LYAT+VLPPEALYRLRSLYP++YTLTYS+DGFMYIPGGHAGASY+HKYDQL+WLT G+L 
Sbjct: 172  LYATMVLPPEALYRLRSLYPEVYTLTYSDDGFMYIPGGHAGASYYHKYDQLQWLTAGYLI 231

Query: 183  APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPI 362
            + +  T+TAQRLETKGANHLFIFQRG YLTPERRTFTT   YVTVP+IFLP   N RTPI
Sbjct: 232  SEST-TVTAQRLETKGANHLFIFQRGRYLTPERRTFTTATSYVTVPEIFLPSSANARTPI 290

Query: 363  SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSH 542
            +KT+ MQ+FFYIKSVKE +ERD+WAKFRQLISTKELQH+QP E TLLVNYF+F A+LDS 
Sbjct: 291  TKTLAMQIFFYIKSVKECRERDLWAKFRQLISTKELQHFQPDEATLLVNYFDFVANLDSA 350

Query: 543  TCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 722
            TC ED+LSG+L+ RLLRP R + Q +++FF+G P   KLIKAL WQP+ LEF V TV   
Sbjct: 351  TCHEDILSGSLLTRLLRPARVNWQALVRFFKGSPDHTKLIKALQWQPVLLEFKVSTVLVH 410

Query: 723  LRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSL 902
             R PPGF +P  +P PVN  DA T  A                            ++ SL
Sbjct: 411  KRTPPGFRHPLCRPLPVNEVDALTTAA---------------------------CANQSL 443

Query: 903  KVGHADLSTEQLRALHELGNTRLGGPLLP 989
             +   +LS +QL ALH LG+ R  G  LP
Sbjct: 444  PLD--NLSEDQLEALHVLGSLRTDGESLP 470


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
           RecName: Full=RNA replication protein; AltName: Full=176
           kDa protein; AltName: Full=ORF1 protein; Includes:
           RecName: Full=RNA-directed RNA polymerase; Includes:
           RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
           protein product [Papaya mosaic virus]
           gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
           virus]
          Length = 1547

 Score =  269 bits (687), Expect = 2e-69
 Identities = 133/246 (54%), Positives = 174/246 (70%), Gaps = 6/246 (2%)
 Frame = +3

Query: 3   LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
           LYAT+VLPPEAL+RL SL+P IY L + ++ F+Y PGGHAGA+Y HKY+QLEW+ VG   
Sbjct: 174 LYATMVLPPEALHRLHSLHPGIYELEFHQEHFIYKPGGHAGAAYIHKYEQLEWIKVGRFK 233

Query: 183 APNQP----TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 350
             ++      +T+Q LETKGANHLFIFQRG +LTPE R F+T   YVT+P IFLP+++N 
Sbjct: 234 WADEKGLTHMVTSQILETKGANHLFIFQRGRFLTPELRCFSTETKYVTMPPIFLPKQFNA 293

Query: 351 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 530
           R PI KT   Q+F Y+KSVK   ERDIWAK RQL+ T ELQ Y P E+TLLVNYF   A 
Sbjct: 294 RLPIKKTTAQQLFLYVKSVKNVTERDIWAKMRQLLKTSELQDYNPREVTLLVNYFLLIAR 353

Query: 531 LDSHTCFEDVLSGNLIQRLLRPLRS--DIQRVLQFFRGRPSFVKLIKALDWQPITLEFPV 704
           L S TCF++VLSG + ++L +P  +  +IQ+   F  G   F +L++AL+W  +TL +P 
Sbjct: 354 LRSETCFDNVLSGGMFKKLFKPFIAWWEIQKHKIF--GNEEFEQLMEALEWVDVTLTYPT 411

Query: 705 RTVNTR 722
           +T + R
Sbjct: 412 KTFDNR 417


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
           gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
           RNA polymerase [Cassava common mosaic virus]
           gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  268 bits (684), Expect = 4e-69
 Identities = 131/248 (52%), Positives = 168/248 (67%), Gaps = 12/248 (4%)
 Frame = +3

Query: 6   YATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT- 182
           YAT+VLPPEAL+++ SLYPQIYTL Y E GF+Y PGGHAGASY+H+Y QL WL VG +  
Sbjct: 173 YATMVLPPEALHKMNSLYPQIYTLQYKEKGFIYTPGGHAGASYYHEYSQLGWLDVGLIEY 232

Query: 183 -APNQP----------TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIF 329
              N P           +TAQR+ETKGANHLF+FQRG   TP+ R+  T   Y+TVP +F
Sbjct: 233 FEENAPDGSEYLGTKWAVTAQRIETKGANHLFVFQRGRLQTPQMRSIATNTQYITVPAVF 292

Query: 330 LPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVN 509
           LP+K+N R P+ KTI  QMF YIKSVK+  ERDI++K RQLI T ELQ Y P E+ LL N
Sbjct: 293 LPKKFNSRQPLKKTIAQQMFLYIKSVKQVTERDIYSKLRQLIKTSELQEYSPDELVLLAN 352

Query: 510 YFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPIT 689
           YF   + L S    E+VL+G+L ++L RP++S +   +    G+P F +L++AL W  + 
Sbjct: 353 YFMLISELSSKASAEEVLAGSLFKKLFRPIKSKVTAFIHKLFGQPEFAQLLEALLWTNVD 412

Query: 690 LEFPVRTV 713
           L  PVR V
Sbjct: 413 LILPVRYV 420


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
           [Allium virus X]
          Length = 1701

 Score =  256 bits (653), Expect = 2e-65
 Identities = 128/239 (53%), Positives = 164/239 (68%), Gaps = 1/239 (0%)
 Frame = +3

Query: 3   LYATLVLPPEALYRLRSLYPQIYTLTY-SEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL 179
           L AT+VLP EA YR+ SL+P +YTL+Y  E  F+Y PGGH GA Y H + QL+WL VG +
Sbjct: 170 LVATMVLPAEAKYRMASLHPNVYTLSYFGEHNFIYAPGGHHGAEYVHDFKQLDWLRVGRV 229

Query: 180 TAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTP 359
              NQ  ITAQR+E+K ANHLF+FQRGN  TP  R F T + YVT+P IFLP+K+N R P
Sbjct: 230 RYKNQ-IITAQRIESKAANHLFVFQRGNLNTPPLRGFGTCKKYVTLPRIFLPKKFNTRVP 288

Query: 360 ISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDS 539
           I KT++MQ+F Y+K V +  ERDI+AK RQLI T +LQ +  SE+  +VNYF F A  DS
Sbjct: 289 IEKTLVMQIFTYVKGVAKVTERDIYAKVRQLIKTDQLQGFDASELVHIVNYFCFIAKQDS 348

Query: 540 HTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVN 716
            TCF D+LSG+L ++L +PL + +     F  G P F KL+KAL WQ IT+   V  +N
Sbjct: 349 MTCFSDILSGSLFKKLFQPLAAFLAECKHFIFGEPDFKKLLKALQWQDITMVVTVADIN 407


>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  251 bits (640), Expect = 5e-64
 Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 4/240 (1%)
 Frame = +3

Query: 3   LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
           LYAT+VLPPEA++R+ S++P IY L + E  F+Y PGGHAGASY H+Y QL+WL VG   
Sbjct: 174 LYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEYSQLQWLKVGKFE 233

Query: 183 APNQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 350
             ++      +T+Q LETKGANHLF+FQRGN+ TP  RTF     +VT+P IFLP+KYN 
Sbjct: 234 WCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNA 293

Query: 351 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 530
           R PI KT+  Q+F YIKSVK   ERDIWAK RQ+I T ELQ Y   E+ L+VNY+   + 
Sbjct: 294 RYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLISK 353

Query: 531 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 710
           LDS TCF++VL+G ++++L +P+ +          G+  F +L++AL+W  ++L + V T
Sbjct: 354 LDSVTCFDNVLTGGVLKKLFKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVSLSYKVET 413


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  251 bits (640), Expect = 5e-64
 Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 4/240 (1%)
 Frame = +3

Query: 3   LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
           LYAT+VLPPEA++R+ S++P IY L + E  F+Y PGGHAGASY H+Y QL+WL VG   
Sbjct: 174 LYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEYSQLQWLKVGKFE 233

Query: 183 APNQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 350
             ++      +T+Q LETKGANHLF+FQRGN+ TP  RTF     +VT+P IFLP+KYN 
Sbjct: 234 WCDKKYQKHHVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNA 293

Query: 351 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 530
           R PI KT+  Q+F YIKSVK   ERDIWAK RQ+I T ELQ Y   E+ L+VNY+   + 
Sbjct: 294 RYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLISK 353

Query: 531 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 710
           LDS TCF++VL+G ++++L +P+ +          G+  F +L++AL+W  ++L + V T
Sbjct: 354 LDSVTCFDNVLTGGVLKKLFKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVSLSYKVET 413


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  250 bits (638), Expect = 8e-64
 Identities = 121/240 (50%), Positives = 163/240 (67%), Gaps = 4/240 (1%)
 Frame = +3

Query: 3   LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
           LYAT+VLPPEA++R+ S++P IY L + E  F+Y PGGHAGASY H+Y QL+WL VG   
Sbjct: 174 LYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEYSQLQWLKVGKFE 233

Query: 183 ----APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 350
                  +  +T+Q LETKGANHLF+FQRGN+ TP  RTF     +VT+P IFLP+KYN 
Sbjct: 234 WCDKRYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNA 293

Query: 351 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 530
           R PI KT+  Q+F YIKSVK   ERDIWAK RQ+I T ELQ Y   E+ L+VNY+   + 
Sbjct: 294 RYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLISK 353

Query: 531 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 710
           LDS TCF++VL+G  +++L +P+ +          G+  F +L++AL+W  ++L + V T
Sbjct: 354 LDSVTCFDNVLTGGALKKLFKPIVAWWSTFKGALFGKEEFEQLMEALEWVDVSLSYKVET 413


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
           replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  249 bits (636), Expect = 1e-63
 Identities = 121/240 (50%), Positives = 164/240 (68%), Gaps = 4/240 (1%)
 Frame = +3

Query: 3   LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT 182
           LYAT+VLPPEA++R+ S++P IY L + E  F+Y PGGHAGASY H+Y QL+WL VG   
Sbjct: 174 LYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEYSQLQWLKVGKFE 233

Query: 183 APNQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 350
             ++      +T+Q LETKGANHLF+FQRGN+ TP  RTF     +VT+P IFLP+KYN 
Sbjct: 234 WCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNA 293

Query: 351 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 530
           R PI KT+  Q+F YIKSVK   ERDIWAK RQ+I T ELQ Y   E+ L+VNY+   + 
Sbjct: 294 RYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLISK 353

Query: 531 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 710
           LDS TCF++VL+G  +++L +P+ +          G+  F +L++AL+W  ++L + V T
Sbjct: 354 LDSVTCFDNVLTGGALKKLFKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVSLSYRVET 413


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  246 bits (628), Expect = 1e-62
 Identities = 127/262 (48%), Positives = 169/262 (64%), Gaps = 10/262 (3%)
 Frame = +3

Query: 9   ATLVLPPEALYRLRSLYPQIYTLTYSEDG-------FMYIPGGHAGASYFHKYDQLEWLT 167
           AT+VLP EALY L SLYP +Y+L+Y +         F Y PGGH GA Y H+  Q++WL 
Sbjct: 174 ATMVLPTEALYGLTSLYPNVYSLSYHKPSKFRRKALFSYAPGGHKGAEYVHELKQIDWLR 233

Query: 168 VGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 347
            GH+    +  ITAQ+LETK ANHLFI++RG Y TPE R F T   YVT+P IFLP ++N
Sbjct: 234 FGHII-DGKVCITAQKLETKAANHLFIYKRGKYFTPEIRNFNTQTKYVTLPKIFLPAQFN 292

Query: 348 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 527
            R PI KT++MQ+F Y+K+V  AKERDIWAK RQLI T++LQ Y P+EI  LVNYF F A
Sbjct: 293 HRVPIKKTLVMQLFMYVKTVSAAKERDIWAKIRQLIKTEDLQEYSPTEIVHLVNYFLFIA 352

Query: 528 SLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLE---F 698
              + T F+ +L G++I+++ RP+ +  +   Q   G   F +L++AL W  I L     
Sbjct: 353 KTSAVTSFDSMLDGSIIKKIFRPVLAWFKSGYQRIFGLSEFNQLLEALSWDEIDLTLDVL 412

Query: 699 PVRTVNTRLRGPPGFHNPFTKP 764
           PV+T + R  G    ++PFT P
Sbjct: 413 PVKTHDWRRMGVADSNDPFTYP 434


>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
           replicase [Tamus red mosaic virus]
          Length = 1501

 Score =  244 bits (624), Expect = 3e-62
 Identities = 126/269 (46%), Positives = 168/269 (62%), Gaps = 6/269 (2%)
 Frame = +3

Query: 3   LYATLVLPPEALYRLRSLYPQIYTLTYSE------DGFMYIPGGHAGASYFHKYDQLEWL 164
           L AT+VLP EA + L S+YP IYTL Y          F Y PGGH GA Y H+  QL+WL
Sbjct: 172 LVATMVLPAEAKFNLASIYPNIYTLQYHRCKKGKVTHFSYAPGGHKGAEYVHELKQLDWL 231

Query: 165 TVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKY 344
           +VG LT     TITAQ++ETK ANHLFIFQRG+ +TP  R F+T   +VT+P IFLPEK+
Sbjct: 232 SVGRLT-DGVTTITAQKIETKAANHLFIFQRGSLMTPCLRNFSTETKFVTLPLIFLPEKF 290

Query: 345 NCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 524
           N R PI KT++MQMF Y+K VK+  ERDIWAK+RQLI T++LQ +   E+  L NYF F 
Sbjct: 291 NARQPIRKTLVMQMFLYVKGVKQVSERDIWAKWRQLIKTEDLQDFSAIELLHLTNYFVFV 350

Query: 525 ASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPV 704
               S  CF+DVL G  + R  +P+++  + V Q   G   FV+L++AL+W  + L+   
Sbjct: 351 GKQSSINCFDDVLKGGFLTRWFKPIKNWFEMVRQKIFGEAEFVRLVRALEWTEVDLKLDT 410

Query: 705 RTVNTRLRGPPGFHNPFTKPHPVNPDDAD 791
           +  + + R   GF +         PDD++
Sbjct: 411 KNYDFKRREGNGFLS--LSKVAAGPDDSE 437


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