BLASTX nr result
ID: Ephedra26_contig00013445
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00013445
(589 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 334 1e-89
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a... 306 3e-81
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 305 4e-81
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 305 4e-81
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 305 4e-81
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 305 4e-81
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 305 4e-81
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 305 4e-81
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 304 1e-80
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 258 8e-67
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 220 2e-55
gb|AHB59866.1| replicase [Narcissus mosaic virus] 142 5e-32
ref|YP_001715612.1| RNA dependent RNA polymerase [Asparagus viru... 142 7e-32
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2... 141 1e-31
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A... 141 1e-31
gb|AAP51012.1| 186K protein [Narcissus mosaic virus strain New Z... 139 4e-31
ref|NP_040778.1| replicase [Narcissus mosaic virus] gi|139136|sp... 138 1e-30
ref|NP_077079.1| replicase [Clover yellow mosaic virus] 138 1e-30
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 137 2e-30
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548... 137 3e-30
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 334 bits (856), Expect = 1e-89
Identities = 161/196 (82%), Positives = 174/196 (88%)
Frame = +1
Query: 1 VTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 180
VTVPDIFLPE+YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS
Sbjct: 274 VTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 333
Query: 181 EITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKA 360
EITLLVNYFEF ASLDSHTCFEDVLSGNL+QRLLRPLR+D+QR+L FFRGRPSFVKLIKA
Sbjct: 334 EITLLVNYFEFAASLDSHTCFEDVLSGNLLQRLLRPLRADMQRILHFFRGRPSFVKLIKA 393
Query: 361 LDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTAETSTPTT 540
LDWQPITLEFPVR VNTRLRGPPGF +PFT+P PVNPDDA+T +FREF S T
Sbjct: 394 LDWQPITLEFPVRRVNTRLRGPPGFLSPFTRPQPVNPDDAETTESFREFIQPLNPSPTAT 453
Query: 541 IADSLEGSAENLASHT 588
+ + LE S E+ +HT
Sbjct: 454 VTEMLENSTESDVTHT 469
>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 669
Score = 306 bits (784), Expect = 3e-81
Identities = 150/195 (76%), Positives = 164/195 (84%)
Frame = +1
Query: 1 VTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 180
VTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS
Sbjct: 274 VTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 333
Query: 181 EITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKA 360
EITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPL S ++L FFRGRPSFVKLI+A
Sbjct: 334 EITLLVNYFEFTASLDSHTCFEDILSGNLLQRILRPLTSGATQILNFFRGRPSFVKLIQA 393
Query: 361 LDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTAETSTPTT 540
LDWQPITLEFPVR VNT LRGPPGF +PFT+P PVNPDDA+T +F+ F A
Sbjct: 394 LDWQPITLEFPVRKVNTLLRGPPGFDSPFTRPQPVNPDDAETTHSFQAFCQAA-----AA 448
Query: 541 IADSLEGSAENLASH 585
+ +LE AE H
Sbjct: 449 VETTLEQQAETPDEH 463
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 305 bits (782), Expect = 4e-81
Identities = 147/184 (79%), Positives = 160/184 (86%)
Frame = +1
Query: 1 VTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 180
VTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS
Sbjct: 274 VTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 333
Query: 181 EITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKA 360
EITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKA
Sbjct: 334 EITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKA 393
Query: 361 LDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTAETSTPTT 540
LDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F T T
Sbjct: 394 LDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATATVEATL 453
Query: 541 IADS 552
S
Sbjct: 454 AQQS 457
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 305 bits (782), Expect = 4e-81
Identities = 147/184 (79%), Positives = 160/184 (86%)
Frame = +1
Query: 1 VTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 180
VTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS
Sbjct: 274 VTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 333
Query: 181 EITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKA 360
EITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKA
Sbjct: 334 EITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKA 393
Query: 361 LDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTAETSTPTT 540
LDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F T T
Sbjct: 394 LDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATATVEATL 453
Query: 541 IADS 552
S
Sbjct: 454 AQQS 457
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 305 bits (782), Expect = 4e-81
Identities = 147/184 (79%), Positives = 160/184 (86%)
Frame = +1
Query: 1 VTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 180
VTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS
Sbjct: 274 VTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 333
Query: 181 EITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKA 360
EITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKA
Sbjct: 334 EITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKA 393
Query: 361 LDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTAETSTPTT 540
LDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F T T
Sbjct: 394 LDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATATVEATL 453
Query: 541 IADS 552
S
Sbjct: 454 AQQS 457
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 305 bits (782), Expect = 4e-81
Identities = 147/184 (79%), Positives = 160/184 (86%)
Frame = +1
Query: 1 VTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 180
VTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS
Sbjct: 274 VTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 333
Query: 181 EITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKA 360
EITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKA
Sbjct: 334 EITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKA 393
Query: 361 LDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTAETSTPTT 540
LDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F T T
Sbjct: 394 LDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATATVEATL 453
Query: 541 IADS 552
S
Sbjct: 454 AQQS 457
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 305 bits (782), Expect = 4e-81
Identities = 147/184 (79%), Positives = 160/184 (86%)
Frame = +1
Query: 1 VTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 180
VTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS
Sbjct: 274 VTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 333
Query: 181 EITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKA 360
EITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKA
Sbjct: 334 EITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKA 393
Query: 361 LDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTAETSTPTT 540
LDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F T T
Sbjct: 394 LDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATATVEXTL 453
Query: 541 IADS 552
S
Sbjct: 454 AQQS 457
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 305 bits (782), Expect = 4e-81
Identities = 147/184 (79%), Positives = 160/184 (86%)
Frame = +1
Query: 1 VTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 180
VTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS
Sbjct: 274 VTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 333
Query: 181 EITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKA 360
EITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKA
Sbjct: 334 EITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKA 393
Query: 361 LDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTAETSTPTT 540
LDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F T T
Sbjct: 394 LDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATATVEATL 453
Query: 541 IADS 552
S
Sbjct: 454 AQQS 457
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 304 bits (779), Expect = 1e-80
Identities = 149/195 (76%), Positives = 165/195 (84%)
Frame = +1
Query: 1 VTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 180
VTVPD+FLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS
Sbjct: 274 VTVPDVFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 333
Query: 181 EITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKA 360
EITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPL+S I ++L FFRGRPSFVKLIKA
Sbjct: 334 EITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLKSGITQLLNFFRGRPSFVKLIKA 393
Query: 361 LDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTAETSTPTT 540
LDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F T+
Sbjct: 394 LDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATITAEA-- 451
Query: 541 IADSLEGSAENLASH 585
+LE AE H
Sbjct: 452 ---ALEQQAETPDEH 463
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 258 bits (659), Expect = 8e-67
Identities = 132/196 (67%), Positives = 147/196 (75%)
Frame = +1
Query: 1 VTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 180
VTVP IFLPE YNCRTPISKT MMQMFFYIKS KEA+ + +QLISTKELQHYQPS
Sbjct: 273 VTVPHIFLPENYNCRTPISKTTMMQMFFYIKSGKEAQREGHLGQVQQLISTKELQHYQPS 332
Query: 181 EITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKA 360
EITLLVNYFEFTA+LDSHTCFEDV L + I R+LQFFRGRPSFVKLIKA
Sbjct: 333 EITLLVNYFEFTATLDSHTCFEDV-PPKLAPKTTPAPPLGISRILQFFRGRPSFVKLIKA 391
Query: 361 LDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTAETSTPTT 540
LDWQPITLEFPVR V T +RGPPGF NPFT+P PVNP+DAD F++FS ++ T
Sbjct: 392 LDWQPITLEFPVRDVRTTVRGPPGFKNPFTQPQPVNPEDADISSRFQDFSRATNSTPKPT 451
Query: 541 IADSLEGSAENLASHT 588
+ LE SAE+ HT
Sbjct: 452 VEAVLEASAESPDHHT 467
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 220 bits (560), Expect = 2e-55
Identities = 107/165 (64%), Positives = 127/165 (76%)
Frame = +1
Query: 1 VTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 180
VTVP+IFLP N RTPI+KT+ MQ+FFYIKSVKE +ERD+WAKFRQLISTKELQH+QP
Sbjct: 273 VTVPEIFLPSSANARTPITKTLAMQIFFYIKSVKECRERDLWAKFRQLISTKELQHFQPD 332
Query: 181 EITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKA 360
E TLLVNYF+F A+LDS TC ED+LSG+L+ RLLRP R + Q +++FF+G P KLIKA
Sbjct: 333 EATLLVNYFDFVANLDSATCHEDILSGSLLTRLLRPARVNWQALVRFFKGSPDHTKLIKA 392
Query: 361 LDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRA 495
L WQP+ LEF V TV R PPGF +P +P PVN DA T A
Sbjct: 393 LQWQPVLLEFKVSTVLVHKRTPPGFRHPLCRPLPVNEVDALTTAA 437
>gb|AHB59866.1| replicase [Narcissus mosaic virus]
Length = 1630
Score = 142 bits (359), Expect = 5e-32
Identities = 71/145 (48%), Positives = 96/145 (66%), Gaps = 5/145 (3%)
Frame = +1
Query: 1 VTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 180
VT+P IF P N P+SKT MQM Y KSVK+ ERDI+AK RQ+I T EL+ Y P
Sbjct: 278 VTLPQIFFPAAMNANRPLSKTKAMQMLLYCKSVKQVTERDIYAKIRQIIPTSELELYDPD 337
Query: 181 EITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKA 360
EI L NYF F ++LDS TC+ED+LS N+ RL RPLR+ +++ ++FF+G+ F KL+ A
Sbjct: 338 EIVHLANYFSFVSNLDSITCYEDLLSSNIWTRLTRPLRTAVRKFVEFFKGKQDFDKLLIA 397
Query: 361 LDWQPIT-----LEFPVRTVNTRLR 420
L WQP + ++F V+ R+R
Sbjct: 398 LKWQPFSYSLEPVDFTAYFVSRRVR 422
>ref|YP_001715612.1| RNA dependent RNA polymerase [Asparagus virus 3]
gi|169219513|dbj|BAG12158.1| RNA dependent RNA
polymerase [Asparagus virus 3]
Length = 1614
Score = 142 bits (358), Expect = 7e-32
Identities = 72/138 (52%), Positives = 94/138 (68%), Gaps = 5/138 (3%)
Frame = +1
Query: 1 VTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 180
VT+P IF PE N P++KT MQM Y KSVK+ ERDI+AKFRQ+IST+EL+ Y+P
Sbjct: 278 VTMPKIFCPESMNANRPLTKTKAMQMLMYCKSVKQVSERDIYAKFRQIISTQELELYEPD 337
Query: 181 EITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKA 360
EI L NYF F A LDS TC+ED+L +L +RL P+R+ I + L FFRG+ SF KL+ A
Sbjct: 338 EIVHLCNYFNFVAHLDSITCYEDLLGNSLWRRLTIPIRTTITKALDFFRGQQSFSKLLGA 397
Query: 361 LDWQPIT-----LEFPVR 399
L W+ + ++F VR
Sbjct: 398 LKWESFSYSLEPIDFTVR 415
>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
RecName: Full=RNA replication protein; AltName: Full=176
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
protein product [Papaya mosaic virus]
gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
virus]
Length = 1547
Score = 141 bits (356), Expect = 1e-31
Identities = 70/140 (50%), Positives = 95/140 (67%), Gaps = 2/140 (1%)
Frame = +1
Query: 1 VTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 180
VT+P IFLP+++N R PI KT Q+F Y+KSVK ERDIWAK RQL+ T ELQ Y P
Sbjct: 280 VTMPPIFLPKQFNARLPIKKTTAQQLFLYVKSVKNVTERDIWAKMRQLLKTSELQDYNPR 339
Query: 181 EITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRS--DIQRVLQFFRGRPSFVKLI 354
E+TLLVNYF A L S TCF++VLSG + ++L +P + +IQ+ F G F +L+
Sbjct: 340 EVTLLVNYFLLIARLRSETCFDNVLSGGMFKKLFKPFIAWWEIQKHKIF--GNEEFEQLM 397
Query: 355 KALDWQPITLEFPVRTVNTR 414
+AL+W +TL +P +T + R
Sbjct: 398 EALEWVDVTLTYPTKTFDNR 417
>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
[Allium virus X]
Length = 1701
Score = 141 bits (355), Expect = 1e-31
Identities = 68/136 (50%), Positives = 92/136 (67%)
Frame = +1
Query: 1 VTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 180
VT+P IFLP+++N R PI KT++MQ+F Y+K V + ERDI+AK RQLI T +LQ + S
Sbjct: 272 VTLPRIFLPKKFNTRVPIEKTLVMQIFTYVKGVAKVTERDIYAKVRQLIKTDQLQGFDAS 331
Query: 181 EITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKA 360
E+ +VNYF F A DS TCF D+LSG+L ++L +PL + + F G P F KL+KA
Sbjct: 332 ELVHIVNYFCFIAKQDSMTCFSDILSGSLFKKLFQPLAAFLAECKHFIFGEPDFKKLLKA 391
Query: 361 LDWQPITLEFPVRTVN 408
L WQ IT+ V +N
Sbjct: 392 LQWQDITMVVTVADIN 407
>gb|AAP51012.1| 186K protein [Narcissus mosaic virus strain New Zealand]
Length = 1643
Score = 139 bits (351), Expect = 4e-31
Identities = 69/145 (47%), Positives = 96/145 (66%), Gaps = 5/145 (3%)
Frame = +1
Query: 1 VTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 180
VT+P +F P N P+SKT MQM Y KSVK+ ERDI+AK RQ+I T EL+ Y P
Sbjct: 278 VTLPQVFCPAAMNANRPLSKTKAMQMLLYCKSVKQVTERDIYAKIRQIIPTSELELYDPD 337
Query: 181 EITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKA 360
EI L NYF F ++LDS TC+ED+LS ++ RL RPLR+ +++ ++FF+G+ F KL+ A
Sbjct: 338 EIVHLANYFFFVSNLDSTTCYEDLLSSDIWMRLTRPLRTAVRKFVEFFKGKQDFDKLLIA 397
Query: 361 LDWQPIT-----LEFPVRTVNTRLR 420
L WQP + ++F V+ R+R
Sbjct: 398 LKWQPFSYSLEPVDFTAYFVSRRVR 422
>ref|NP_040778.1| replicase [Narcissus mosaic virus] gi|139136|sp|P15095.1|RDRP_NMV
RecName: Full=RNA replication protein; AltName: Full=186
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222108|dbj|BAA02891.1| 186K
protein [Narcissus mosaic virus]
Length = 1643
Score = 138 bits (347), Expect = 1e-30
Identities = 69/145 (47%), Positives = 95/145 (65%), Gaps = 5/145 (3%)
Frame = +1
Query: 1 VTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 180
VT+P +F P N P+SKT MQM Y KSVK+ ERDI+AK RQ+I T EL+ Y P
Sbjct: 278 VTLPQVFCPAAMNANRPLSKTKAMQMLLYCKSVKQVTERDIYAKIRQIIPTSELELYDPD 337
Query: 181 EITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKA 360
EI L NYF F +SLDS TC+ED+LS ++ RL RPLR+ +++ ++ F+G+ F KL+ A
Sbjct: 338 EIVHLANYFFFVSSLDSITCYEDLLSSDIWMRLTRPLRTAVRKFVELFKGKQDFDKLLIA 397
Query: 361 LDWQPIT-----LEFPVRTVNTRLR 420
L WQP + ++F V+ R+R
Sbjct: 398 LKWQPFSYSLEPVDFTAYFVSRRVR 422
>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
Length = 1670
Score = 138 bits (347), Expect = 1e-30
Identities = 71/155 (45%), Positives = 100/155 (64%), Gaps = 3/155 (1%)
Frame = +1
Query: 1 VTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 180
VT+P IFLP ++N R PI KT++MQ+F Y+K+V AKERDIWAK RQLI T++LQ Y P+
Sbjct: 280 VTLPKIFLPAQFNHRVPIKKTLVMQLFMYVKTVSAAKERDIWAKIRQLIKTEDLQEYSPT 339
Query: 181 EITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKA 360
EI LVNYF F A + T F+ +L G++I+++ RP+ + + Q G F +L++A
Sbjct: 340 EIVHLVNYFLFIAKTSAVTSFDSMLDGSIIKKIFRPVLAWFKSGYQRIFGLSEFNQLLEA 399
Query: 361 LDWQPITLE---FPVRTVNTRLRGPPGFHNPFTKP 456
L W I L PV+T + R G ++PFT P
Sbjct: 400 LSWDEIDLTLDVLPVKTHDWRRMGVADSNDPFTYP 434
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 137 bits (345), Expect = 2e-30
Identities = 65/135 (48%), Positives = 90/135 (66%)
Frame = +1
Query: 1 VTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 180
+TVP +FLP+++N R P+ KTI QMF YIKSVK+ ERDI++K RQLI T ELQ Y P
Sbjct: 286 ITVPAVFLPKKFNSRQPLKKTIAQQMFLYIKSVKQVTERDIYSKLRQLIKTSELQEYSPD 345
Query: 181 EITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKA 360
E+ LL NYF + L S E+VL+G+L ++L RP++S + + G+P F +L++A
Sbjct: 346 ELVLLANYFMLISELSSKASAEEVLAGSLFKKLFRPIKSKVTAFIHKLFGQPEFAQLLEA 405
Query: 361 LDWQPITLEFPVRTV 405
L W + L PVR V
Sbjct: 406 LLWTNVDLILPVRYV 420
>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
replicase [Tamus red mosaic virus]
Length = 1501
Score = 137 bits (344), Expect = 3e-30
Identities = 67/161 (41%), Positives = 98/161 (60%)
Frame = +1
Query: 1 VTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPS 180
VT+P IFLPE++N R PI KT++MQMF Y+K VK+ ERDIWAK+RQLI T++LQ +
Sbjct: 279 VTLPLIFLPEKFNARQPIRKTLVMQMFLYVKGVKQVSERDIWAKWRQLIKTEDLQDFSAI 338
Query: 181 EITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKA 360
E+ L NYF F S CF+DVL G + R +P+++ + V Q G FV+L++A
Sbjct: 339 ELLHLTNYFVFVGKQSSINCFDDVLKGGFLTRWFKPIKNWFEMVRQKIFGEAEFVRLVRA 398
Query: 361 LDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDAD 483
L+W + L+ + + + R GF + PDD++
Sbjct: 399 LEWTEVDLKLDTKNYDFKRREGNGFLS--LSKVAAGPDDSE 437