BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00012500
         (1010 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]   125   3e-48
gb|EOY11267.1| Uncharacterized protein TCM_026511 [Theobroma cacao]   139   2e-47
gb|EOY32548.1| Uncharacterized protein TCM_040529 [Theobroma cacao]   136   3e-47
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   145   3e-46
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   145   4e-46
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         144   9e-46
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   144   9e-46
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...   146   1e-45
emb|CAN82637.1| hypothetical protein VITISV_028818 [Vitis vinifera]   139   6e-45
gb|AAS07263.1| putative gag/pol polyprotein [Oryza sativa Japoni...   131   1e-44
emb|CAN66873.1| hypothetical protein VITISV_021427 [Vitis vinifera]   135   2e-43
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   130   4e-43
gb|ABR16307.1| unknown [Picea sitchensis]                             139   5e-43
gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsi...   131   6e-43
emb|CAN68340.1| hypothetical protein VITISV_025981 [Vitis vinifera]   137   7e-43
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...   117   1e-42
dbj|BAB03249.1| polyprotein [Oryza sativa]                            133   1e-42
gb|ABA96257.1| retrotransposon protein, putative, Ty1-copia subc...   132   1e-42
gb|AAV32100.1| putative polyprotein [Oryza sativa Japonica Group]     133   1e-42
gb|AAK73108.1|AF391808_10 Fourf gag/pol protein [Zea mays] gi|16...   130   1e-42

>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
          Length = 1544

 Score =  125 bits (315), Expect(2) = 3e-48
 Identities = 63/128 (49%), Positives = 84/128 (65%)
 Frame = -2

Query: 451  YILTFTDDFSKMTWSYLLKNKSEVFETFVIFRKRVQTQTNTKIKCFRSDNGTEFTSNEFI 272
            Y +TFTDD+S+  + YLL  KSE FE F  F+  ++ +    IK  RSD+G E+ S EFI
Sbjct: 841  YFVTFTDDYSRYGYIYLLCRKSECFEKFKAFKAEMEQRHGKYIKTLRSDHGGEYISREFI 900

Query: 271  MFFQDKGIKRELTTPYTPQQNGVSERKNRTLIEMVRSLLISSHLSQRWWGEATLIATYIL 92
             F  ++GI  +L+ P  PQQNGV+ER+NRTL+EMVRS++  S L    WG A   A YIL
Sbjct: 901  TFLSEQGITSQLSAPGMPQQNGVAERRNRTLMEMVRSMMSYSDLPISLWGHAIETAAYIL 960

Query: 91   NLIPRKDL 68
            NL+P K +
Sbjct: 961  NLVPSKSV 968



 Score = 94.0 bits (232), Expect(2) = 3e-48
 Identities = 66/204 (32%), Positives = 101/204 (49%), Gaps = 22/204 (10%)
 Frame = -1

Query: 1007 GERVVKTAGKEQLAIKGYGDIILNFGKNKIL-LKNTYYVEGLRRNLISLYQLVVDQYQIV 831
            GE  +      ++A+   G+I LNF  N+ L LKN  YV  +RRNLI +  L  + Y + 
Sbjct: 639  GEVNIFLGNGSEVAVLAVGNIALNFKNNRTLFLKNVLYVPSIRRNLIPISSLSKNGYSVC 698

Query: 830  AFKEPNGLVQCKITQDDKVITSGKEQNGLFIM-IPEQTECYLTEEKNIN----------- 687
              +  +  V  K  +  ++I SG   + L+I+ +  + +   +E  N +           
Sbjct: 699  FNEFYDDSVVIKFRE--QMICSGSLIDSLYILKVTPELQLTNSEVNNFDIVAPLKRKRPI 756

Query: 686  ------LWHRRLGHISSIYLKKIGHAVNQGPKNLTTIE---NCENCCEAKMHRNPFPSRT 534
                  LWH RLGHI+   L +I   V  GP +   +E    CE+C E KM + PFP + 
Sbjct: 757  ELSYTYLWHLRLGHIN---LDRISLLVKDGPLSSLKVEALPTCESCLEGKMTKRPFPLKG 813

Query: 533  RSTDTILEIIHSDLCGPISPLSYG 462
               + +LE+IHSDLCGP+S  + G
Sbjct: 814  NRANDVLELIHSDLCGPMSVQARG 837


>gb|EOY11267.1| Uncharacterized protein TCM_026511 [Theobroma cacao]
          Length = 1318

 Score =  139 bits (350), Expect(2) = 2e-47
 Identities = 67/133 (50%), Positives = 88/133 (66%)
 Frame = -2

Query: 454 RYILTFTDDFSKMTWSYLLKNKSEVFETFVIFRKRVQTQTNTKIKCFRSDNGTEFTSNEF 275
           +Y + F DDFS+  W + LK KSE  + F+ F+  V+ QT+ KIK  RSDNG+E+TSNEF
Sbjct: 538 KYFILFIDDFSRFCWIFFLKQKSEAIQYFMKFKVLVEKQTDQKIKALRSDNGSEYTSNEF 597

Query: 274 IMFFQDKGIKRELTTPYTPQQNGVSERKNRTLIEMVRSLLISSHLSQRWWGEATLIATYI 95
                 +GIK+ LT PY+PQQNGVSERKNRT++EM+R LL    + + +W EA   A  +
Sbjct: 598 KALLTQEGIKQFLTVPYSPQQNGVSERKNRTIMEMIRCLLFEQQMPKYFWAEAANFAVTL 657

Query: 94  LNLIPRKDLNWQT 56
            NLIP   LN  T
Sbjct: 658 QNLIPTTALNSMT 670



 Score = 78.2 bits (191), Expect(2) = 2e-47
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 6/181 (3%)
 Frame = -1

Query: 971 LAIKGYGDIILNFGKNKILLKNTYYVEGLRRNLISLYQLVVDQYQIVAFKEPNGLVQCKI 792
           L I G G + +   K    + N  +   + +NL+S+ QLV ++  ++ FK+      C I
Sbjct: 365 LKIAGRGTVGITTKKGMKTIANVCFAPEVTQNLLSVGQLVKEKNSLL-FKDE----LCTI 419

Query: 791 TQDD-KVITSGKEQNGLFIMIPEQTE--CYLTEEKNINLWHRRLGHISSIYLKKIG--HA 627
                + I + K +N  F +   +     Y        LWHRRLGHI+  ++K +G  + 
Sbjct: 420 FDPSGREIATVKMRNKCFPLDLNEAGHMAYKCVSNEARLWHRRLGHINYQFIKNMGSLNL 479

Query: 626 VNQGPKNLTTIENCENCCEAKMHRNPFPSRTRS-TDTILEIIHSDLCGPISPLSYGEKKV 450
           VN  P      + CE C + K  R+PFP ++++ T   L++IH+D+CGPI  LS    K 
Sbjct: 480 VNDMPIITEVEKTCEVCLQGKQSRHPFPKQSQTRTANRLQLIHTDICGPIGTLSLNGNKY 539

Query: 449 Y 447
           +
Sbjct: 540 F 540


>gb|EOY32548.1| Uncharacterized protein TCM_040529 [Theobroma cacao]
          Length = 1266

 Score =  136 bits (342), Expect(2) = 3e-47
 Identities = 66/133 (49%), Positives = 87/133 (65%)
 Frame = -2

Query: 454 RYILTFTDDFSKMTWSYLLKNKSEVFETFVIFRKRVQTQTNTKIKCFRSDNGTEFTSNEF 275
           +Y + F DDFS+  W + LK KSE  + F+ F+  V+ QT+ KIK  RSDNG+E+TSNEF
Sbjct: 538 KYFILFIDDFSRFCWIFFLKQKSEAIQYFMKFKVLVEKQTDQKIKALRSDNGSEYTSNEF 597

Query: 274 IMFFQDKGIKRELTTPYTPQQNGVSERKNRTLIEMVRSLLISSHLSQRWWGEATLIATYI 95
                 +GIK+ LT  Y+PQQNGVSERKNRT++EM+R LL    + + +W EA   A  +
Sbjct: 598 KALLTQEGIKQFLTVTYSPQQNGVSERKNRTIMEMIRCLLFEQQMPKYFWAEAANFAVTL 657

Query: 94  LNLIPRKDLNWQT 56
            NLIP   LN  T
Sbjct: 658 QNLIPTTALNSMT 670



 Score = 80.5 bits (197), Expect(2) = 3e-47
 Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 7/182 (3%)
 Frame = -1

Query: 971 LAIKGYGDIILNFGKNKILLKNTYYVEGLRRNLISLYQLVVDQYQIVAFKEPNGLVQCKI 792
           L I+G G I +   K    + N  +   + +NL+S+ QLV ++  ++ FK+      C I
Sbjct: 365 LKIEGRGTIGITTKKGIKTIANVCFAPEVTQNLLSVGQLVKEKNSLL-FKDE----LCTI 419

Query: 791 TQDD-KVITSGKEQNGLFIMIPEQTE--CYLTEEKNINLWHRRLGHISSIYLKKIG--HA 627
                + I + K +N  F +   +     Y        LWHRRLGHI+  ++K +G  + 
Sbjct: 420 FDPSGREIATVKMRNKCFPLDLNEAGHMAYKCVSNEARLWHRRLGHINYQFIKNMGSLNL 479

Query: 626 VNQGPKNLTTIENCENCCEAKMHRNPFP--SRTRSTDTILEIIHSDLCGPISPLSYGEKK 453
           VN  P      + CE C + K  R+PFP  S+TR+T+  L++IH+D+CGPI  LS    K
Sbjct: 480 VNDMPVITEVEKTCEVCLQGKQSRHPFPKQSQTRATNR-LQLIHTDICGPIGTLSLNGNK 538

Query: 452 VY 447
            +
Sbjct: 539 YF 540


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  145 bits (367), Expect(2) = 3e-46
 Identities = 70/135 (51%), Positives = 90/135 (66%)
 Frame = -2

Query: 460 KKRYILTFTDDFSKMTWSYLLKNKSEVFETFVIFRKRVQTQTNTKIKCFRSDNGTEFTSN 281
           K  Y L F DDFS+ TW Y LK KSEVFE F  F+  V+ ++   IK  RSD G EFTS 
Sbjct: 545 KSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSK 604

Query: 280 EFIMFFQDKGIKRELTTPYTPQQNGVSERKNRTLIEMVRSLLISSHLSQRWWGEATLIAT 101
           EF+ + +D GI+R+LT P +PQQNGV+ERKNRT++EM RS+L S  L +  W EA   A 
Sbjct: 605 EFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAV 664

Query: 100 YILNLIPRKDLNWQT 56
           Y+LN  P K ++ +T
Sbjct: 665 YLLNRSPTKSVSGKT 679



 Score = 67.4 bits (163), Expect(2) = 3e-46
 Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 13/196 (6%)
 Frame = -1

Query: 995 VKTAGKEQLAIKGYGDIILNFGK-NKILLKNTYYVEGLRRNLISLYQLVVDQYQIVAFKE 819
           V    + ++ +KG G+I++     +   + N YY+  ++ N++SL QL+   Y I   K+
Sbjct: 363 VALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDI-RLKD 421

Query: 818 PNGLVQCKITQDDKVITS-GKEQNGLFIMIPEQT------ECYLTEEKNINLWHRRLGHI 660
            N  ++    Q+  +IT     +N +F++            CY  E     LWH R GH+
Sbjct: 422 NNLSIR---DQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESW---LWHLRFGHL 475

Query: 659 SSIYLKKIGHAVNQGPKNLTTIEN----CENCCEAKMHRNPFPSRTRS-TDTILEIIHSD 495
           +   L+ +     +  + L  I +    CE C   K  +  FP  + S     LE+IH+D
Sbjct: 476 NFGGLELLSR--KEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKSLELIHTD 533

Query: 494 LCGPISPLSYGEKKVY 447
           +CGPI P S G+   +
Sbjct: 534 VCGPIKPKSLGKSNYF 549


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
           gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
           polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  145 bits (367), Expect(2) = 4e-46
 Identities = 70/135 (51%), Positives = 90/135 (66%)
 Frame = -2

Query: 460 KKRYILTFTDDFSKMTWSYLLKNKSEVFETFVIFRKRVQTQTNTKIKCFRSDNGTEFTSN 281
           K  Y L F DDFS+ TW Y LK KSEVFE F  F+  V+ ++   IK  RSD G EFTS 
Sbjct: 545 KSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSK 604

Query: 280 EFIMFFQDKGIKRELTTPYTPQQNGVSERKNRTLIEMVRSLLISSHLSQRWWGEATLIAT 101
           EF+ + +D GI+R+LT P +PQQNGV+ERKNRT++EM RS+L S  L +  W EA   A 
Sbjct: 605 EFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAV 664

Query: 100 YILNLIPRKDLNWQT 56
           Y+LN  P K ++ +T
Sbjct: 665 YLLNRSPTKSVSGKT 679



 Score = 67.0 bits (162), Expect(2) = 4e-46
 Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 13/196 (6%)
 Frame = -1

Query: 995 VKTAGKEQLAIKGYGDIILNFGK-NKILLKNTYYVEGLRRNLISLYQLVVDQYQIVAFKE 819
           V    + ++ +KG G+I++     +   + N YY+  ++ N++SL QL+   Y I   K+
Sbjct: 363 VALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDI-RLKD 421

Query: 818 PNGLVQCKITQDDKVITS-GKEQNGLFIMIPEQT------ECYLTEEKNINLWHRRLGHI 660
            N  ++    Q+  +IT     +N +F++            CY  E     LWH R GH+
Sbjct: 422 NNLSIR---DQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESW---LWHLRFGHL 475

Query: 659 SSIYLKKIGHAVNQGPKNLTTIEN----CENCCEAKMHRNPFPSRTRS-TDTILEIIHSD 495
           +   L+ +     +  + L  I +    CE C   K  +  FP  + S     LE+IH+D
Sbjct: 476 NFGGLELLSR--KEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTD 533

Query: 494 LCGPISPLSYGEKKVY 447
           +CGPI P S G+   +
Sbjct: 534 VCGPIKPKSLGKSNYF 549


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  144 bits (364), Expect(2) = 9e-46
 Identities = 70/135 (51%), Positives = 89/135 (65%)
 Frame = -2

Query: 460 KKRYILTFTDDFSKMTWSYLLKNKSEVFETFVIFRKRVQTQTNTKIKCFRSDNGTEFTSN 281
           K  Y L F DDFS+ TW Y LK KSEVFE F  F+  V+ ++   IK  RSD G EFTS 
Sbjct: 545 KSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSK 604

Query: 280 EFIMFFQDKGIKRELTTPYTPQQNGVSERKNRTLIEMVRSLLISSHLSQRWWGEATLIAT 101
           EF+ + +D GI+R+LT P +PQQNGV ERKNRT++EM RS+L S  L +  W EA   A 
Sbjct: 605 EFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAV 664

Query: 100 YILNLIPRKDLNWQT 56
           Y+LN  P K ++ +T
Sbjct: 665 YLLNRSPTKSVSGKT 679



 Score = 67.0 bits (162), Expect(2) = 9e-46
 Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 13/196 (6%)
 Frame = -1

Query: 995 VKTAGKEQLAIKGYGDIILNFGK-NKILLKNTYYVEGLRRNLISLYQLVVDQYQIVAFKE 819
           V    + ++ +KG G+I++     +   + N YY+  ++ N++SL QL+   Y I   K+
Sbjct: 363 VALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDI-RLKD 421

Query: 818 PNGLVQCKITQDDKVITS-GKEQNGLFIMIPEQT------ECYLTEEKNINLWHRRLGHI 660
            N  ++    Q+  +IT     +N +F++            CY  E     LWH R GH+
Sbjct: 422 NNLSIR---DQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESW---LWHLRFGHL 475

Query: 659 SSIYLKKIGHAVNQGPKNLTTIEN----CENCCEAKMHRNPFPSRTRS-TDTILEIIHSD 495
           +   L+ +     +  + L  I +    CE C   K  +  FP  + S     LE+IH+D
Sbjct: 476 NFGGLELLSR--KEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTD 533

Query: 494 LCGPISPLSYGEKKVY 447
           +CGPI P S G+   +
Sbjct: 534 VCGPIKPKSLGKSNYF 549


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  144 bits (364), Expect(2) = 9e-46
 Identities = 70/135 (51%), Positives = 89/135 (65%)
 Frame = -2

Query: 460 KKRYILTFTDDFSKMTWSYLLKNKSEVFETFVIFRKRVQTQTNTKIKCFRSDNGTEFTSN 281
           K  Y L F DDFS+ TW Y LK KSEVFE F  F+  V+ ++   IK  RSD G EFTS 
Sbjct: 545 KSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSK 604

Query: 280 EFIMFFQDKGIKRELTTPYTPQQNGVSERKNRTLIEMVRSLLISSHLSQRWWGEATLIAT 101
           EF+ + +D GI+R+LT P +PQQNGV ERKNRT++EM RS+L S  L +  W EA   A 
Sbjct: 605 EFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAV 664

Query: 100 YILNLIPRKDLNWQT 56
           Y+LN  P K ++ +T
Sbjct: 665 YLLNRSPTKSVSGKT 679



 Score = 67.0 bits (162), Expect(2) = 9e-46
 Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 13/196 (6%)
 Frame = -1

Query: 995 VKTAGKEQLAIKGYGDIILNFGK-NKILLKNTYYVEGLRRNLISLYQLVVDQYQIVAFKE 819
           V    + ++ +KG G+I++     +   + N YY+  ++ N++SL QL+   Y I   K+
Sbjct: 363 VALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDI-RLKD 421

Query: 818 PNGLVQCKITQDDKVITS-GKEQNGLFIMIPEQT------ECYLTEEKNINLWHRRLGHI 660
            N  ++    Q+  +IT     +N +F++            CY  E     LWH R GH+
Sbjct: 422 NNLSIR---DQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESW---LWHLRFGHL 475

Query: 659 SSIYLKKIGHAVNQGPKNLTTIEN----CENCCEAKMHRNPFPSRTRS-TDTILEIIHSD 495
           +   L+ +     +  + L  I +    CE C   K  +  FP  + S     LE+IH+D
Sbjct: 476 NFGGLELLSR--KEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTD 533

Query: 494 LCGPISPLSYGEKKVY 447
           +CGPI P S G+   +
Sbjct: 534 VCGPIKPKSLGKSNYF 549


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis
           thaliana]
          Length = 1272

 Score =  146 bits (368), Expect(2) = 1e-45
 Identities = 70/135 (51%), Positives = 91/135 (67%)
 Frame = -2

Query: 460 KKRYILTFTDDFSKMTWSYLLKNKSEVFETFVIFRKRVQTQTNTKIKCFRSDNGTEFTSN 281
           K  Y L F DDFS+ TW Y LK KSEVFE F  F+  V+ ++   IK  RSD+G EFTS 
Sbjct: 545 KSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSK 604

Query: 280 EFIMFFQDKGIKRELTTPYTPQQNGVSERKNRTLIEMVRSLLISSHLSQRWWGEATLIAT 101
           EF+ + +D GI+R+LT P +PQQNGV+ERKNRT++EM RS+L S  L +  W EA   A 
Sbjct: 605 EFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAV 664

Query: 100 YILNLIPRKDLNWQT 56
           Y+LN  P K ++ +T
Sbjct: 665 YLLNRSPTKSVSGKT 679



 Score = 64.7 bits (156), Expect(2) = 1e-45
 Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 12/195 (6%)
 Frame = -1

Query: 995 VKTAGKEQLAIKGYGDIILNFGK-NKILLKNTYYVEGLRRNLISLYQLVVDQYQIVAFKE 819
           V    + ++ +KG G+I++     +   + N YY+  ++ N++SL QL+   Y I   K+
Sbjct: 363 VALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDI-RLKD 421

Query: 818 PNGLVQCKITQDDKVITSGKEQNGLFIMIPEQT------ECYLTEEKNINLWHRRLGHIS 657
            N  ++ K  + + +      +N +F++            CY  E     LWH R GH++
Sbjct: 422 NNLSIRDK--ESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESW---LWHLRFGHLN 476

Query: 656 SIYLKKIGHAVNQGPKNLTTIEN----CENCCEAKMHRNPFPSRTRS-TDTILEIIHSDL 492
              L+ +     +  + L  I +    CE C      +  FP  + S     LE+IH+D+
Sbjct: 477 FGGLELLSR--KEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDV 534

Query: 491 CGPISPLSYGEKKVY 447
           CGPI P S G+   +
Sbjct: 535 CGPIKPKSLGKSNYF 549


>emb|CAN82637.1| hypothetical protein VITISV_028818 [Vitis vinifera]
          Length = 1114

 Score =  139 bits (350), Expect(2) = 6e-45
 Identities = 70/139 (50%), Positives = 91/139 (65%)
 Frame = -2

Query: 454 RYILTFTDDFSKMTWSYLLKNKSEVFETFVIFRKRVQTQTNTKIKCFRSDNGTEFTSNEF 275
           RY LTF DD S+ T+ +LLKNKSE F  F +++  V+ Q    IK  RSD G E+ S+EF
Sbjct: 407 RYFLTFIDDCSRFTYVFLLKNKSETFNAFKVYKAEVENQLGKNIKVLRSDRGGEYFSSEF 466

Query: 274 IMFFQDKGIKRELTTPYTPQQNGVSERKNRTLIEMVRSLLISSHLSQRWWGEATLIATYI 95
             F ++ GI  E T PYTPQ NG++ERKNRT +EMV ++L+ + L+   WGEA LIA YI
Sbjct: 467 NSFCEEYGIIHECTAPYTPQHNGIAERKNRTFLEMVNAMLLHAKLNFNLWGEALLIACYI 526

Query: 94  LNLIPRKDLNWQTLSSYDL 38
           LN IP K      +S Y+L
Sbjct: 527 LNRIPMKK---NEISPYEL 542



 Score = 69.7 bits (169), Expect(2) = 6e-45
 Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)
 Frame = -1

Query: 983 GKEQLAIKGYGDIILNFGKNKILLKNTYYVEGLRRNLISLYQLVVDQYQIVAFKEPNGLV 804
           G +++  KG  +++   GK K+ LKN  YV  + +NL+S  + ++ +  I A  E   L+
Sbjct: 232 GDQEVLGKGTIEVVFTSGK-KVTLKNVLYVPDMNKNLVS--RDLLGKPGIKAVFESGKLI 288

Query: 803 QCKITQDDKVITSGKEQNGLFIMIPEQ-------TECYLTEEKNINLWHRRLGHISSIYL 645
              +T+    +  G   +G+  +           T  Y+ +  ++ LWH RL H+    +
Sbjct: 289 ---LTKSRNFVGKGYSCDGMIKLSTNDNINKMTSTSAYMCDSNSLILWHNRLAHVGLSTI 345

Query: 644 KKIGHAVNQGPKNLTT--IENCENCCEAKMHRNPFPSRTRSTDTILEIIHSDLCGPISPL 471
           K+I   V  G     T   E CE C ++KM + PF S  RS++ +L++IHSDLC     L
Sbjct: 346 KRI---VKCGLIACDTKKFEKCEICVKSKMIKKPFHSVERSSN-LLDLIHSDLCELNGML 401

Query: 470 SYGEKKVY 447
           + G  + +
Sbjct: 402 TRGGNRYF 409


>gb|AAS07263.1| putative gag/pol polyprotein [Oryza sativa Japonica Group]
            gi|108710643|gb|ABF98438.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1318

 Score =  131 bits (330), Expect(2) = 1e-44
 Identities = 64/129 (49%), Positives = 84/129 (65%)
 Frame = -2

Query: 460  KKRYILTFTDDFSKMTWSYLLKNKSEVFETFVIFRKRVQTQTNTKIKCFRSDNGTEFTSN 281
            +K+Y +T  DD ++  + YLLK K E    F I++  V  Q   KIK  RSD G E+ SN
Sbjct: 624  EKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVDNQLERKIKRLRSDRGGEYFSN 683

Query: 280  EFIMFFQDKGIKRELTTPYTPQQNGVSERKNRTLIEMVRSLLISSHLSQRWWGEATLIAT 101
            EF  F ++ GI  E T PY+PQ NGV+ERKNRTL EMV ++L ++ LS+ WWGEA L A 
Sbjct: 684  EFASFCEEFGIIHERTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTAC 743

Query: 100  YILNLIPRK 74
            ++LN IP K
Sbjct: 744  HVLNKIPMK 752



 Score = 76.3 bits (186), Expect(2) = 1e-44
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 7/184 (3%)
 Frame = -1

Query: 968 AIKGYGDIILNFGKNK-ILLKNTYYVEGLRRNLISLYQLVVDQYQIVAFKEPNGLVQCKI 792
           A+ G G + L F   K + LKN  +V  +++NL+S   L  + +++V FK      +C +
Sbjct: 453 AVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLV-FKSN----KCVV 507

Query: 791 TQDDKVITSGKEQNGLF------IMIPEQTECYLTEEKNINLWHRRLGHISSIYLKKIGH 630
           ++ +  +  G +  GLF      +        +++E    N+WH RL H++   + ++ +
Sbjct: 508 SKYETFVGKGYDSGGLFRFSLNDMCNNHNVVNHISENDESNVWHSRLCHVNFSCMTRLAN 567

Query: 629 AVNQGPKNLTTIENCENCCEAKMHRNPFPSRTRSTDTILEIIHSDLCGPISPLSYGEKKV 450
                   L     C  C ++K HR P  +        LE++HSDLC   S L+ GEKK 
Sbjct: 568 MSLIPKFTLVKGSKCHTCVQSKQHRKPHKASEARNLAPLELVHSDLCEMNSVLTKGEKKY 627

Query: 449 YSNL 438
           +  L
Sbjct: 628 FMTL 631


>emb|CAN66873.1| hypothetical protein VITISV_021427 [Vitis vinifera]
          Length = 1473

 Score =  135 bits (339), Expect(2) = 2e-43
 Identities = 68/139 (48%), Positives = 90/139 (64%)
 Frame = -2

Query: 454 RYILTFTDDFSKMTWSYLLKNKSEVFETFVIFRKRVQTQTNTKIKCFRSDNGTEFTSNEF 275
           RY LTF DD S+ T+ +LLKNKSE F  F +++  V+ Q    IK  RSD G E+ S+EF
Sbjct: 517 RYFLTFIDDCSRFTYVFLLKNKSETFNAFKVYKAEVENQLXKNIKVLRSDRGXEYFSSEF 576

Query: 274 IMFFQDKGIKRELTTPYTPQQNGVSERKNRTLIEMVRSLLISSHLSQRWWGEATLIATYI 95
             F ++ GI  E T PYTPQ NG++ERKNRT +EMV  +L+ + L+   WGEA L A +I
Sbjct: 577 NSFCEEYGIIHECTAPYTPQHNGIAERKNRTFLEMVNXMLLHAKLNFNLWGEALLTACHI 636

Query: 94  LNLIPRKDLNWQTLSSYDL 38
           LN IP K    + +S Y+L
Sbjct: 637 LNRIPMKK---KEISPYEL 652



 Score = 68.9 bits (167), Expect(2) = 2e-43
 Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 9/188 (4%)
 Frame = -1

Query: 983 GKEQLAIKGYGDIILNFGKNKILLKNTYYVEGLRRNLISLYQLVVDQYQIVAFKEPNGLV 804
           GK ++  KG  +++   GK K+ LKN  YV  + +NL+S    ++ +  I A  E   L+
Sbjct: 342 GKSKVLGKGTIEVVFTSGK-KVTLKNVLYVPDMNKNLVS--GDLLGKPGIKAVFESGKLI 398

Query: 803 QCKITQDDKVITSGKEQNGLFIMIPEQ-------TECYLTEEKNINLWHRRLGHISSIYL 645
              +T+    +  G   +G+  +           T  Y+ +  ++ LWH RL H+    +
Sbjct: 399 ---LTKSGNFVGKGYSCDGMIKLSTNDNINKMTSTSAYMCDSNSLXLWHNRLAHVGLSTI 455

Query: 644 KKIGHAVNQGPKNLTT--IENCENCCEAKMHRNPFPSRTRSTDTILEIIHSDLCGPISPL 471
           K+I   V  G     T   E CE C ++KM + PF S  RS++ +L++ HSDLC     L
Sbjct: 456 KRI---VKCGLIACDTKKFEKCEICVKSKMIKKPFHSVERSSN-LLDLXHSDLCELNGML 511

Query: 470 SYGEKKVY 447
           + G  + +
Sbjct: 512 TRGGNRYF 519


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  130 bits (326), Expect(2) = 4e-43
 Identities = 65/133 (48%), Positives = 87/133 (65%)
 Frame = -2

Query: 454 RYILTFTDDFSKMTWSYLLKNKSEVFETFVIFRKRVQTQTNTKIKCFRSDNGTEFTSNEF 275
           RY LT  DD+S+  W Y LKNKSE F  F  ++  V+TQT+ K+K  R+DNG EF SN+F
Sbjct: 470 RYFLTLIDDYSRKVWIYFLKNKSETFLKFKEWKILVETQTSRKVKKLRTDNGLEFLSNDF 529

Query: 274 IMFFQDKGIKRELTTPYTPQQNGVSERKNRTLIEMVRSLLISSHLSQRWWGEATLIATYI 95
               Q +GI R  T  YTPQQNG++ER NRT++E VR +L SS LS+ +W EA   A ++
Sbjct: 530 NSLCQKEGIARHRTVRYTPQQNGLAERMNRTILERVRCMLSSSGLSKVFWAEAAETAVHL 589

Query: 94  LNLIPRKDLNWQT 56
           +N  P   L ++T
Sbjct: 590 INRSPSSALQFKT 602



 Score = 72.8 bits (177), Expect(2) = 4e-43
 Identities = 59/190 (31%), Positives = 86/190 (45%), Gaps = 5/190 (2%)
 Frame = -1

Query: 992 KTAGKEQLAIKGYGDIILNFGKNKILLKNTYYVEGLRRNLISLYQLVVDQYQIVAFKEPN 813
           K  G   + IK Y  I       + +L++  Y+  L+RNLISL  L    Y   +  EPN
Sbjct: 298 KILGTGTVRIKHYDGI-------ERVLEDVRYIPELKRNLISLGMLDKSGYTFKS--EPN 348

Query: 812 GLVQCKITQDDKVITSGKEQNGLFIMIPE----QTECYLTEEKNIN-LWHRRLGHISSIY 648
            L   ++ +    +  G  +NGL+ +I +    +    L E+     LWH+RLGHIS   
Sbjct: 349 SL---RVARGSLTVMKGTIKNGLYTLIGQTVTGKVSTVLKEDVGTTKLWHQRLGHISHRG 405

Query: 647 LKKIGHAVNQGPKNLTTIENCENCCEAKMHRNPFPSRTRSTDTILEIIHSDLCGPISPLS 468
           L+++      G   LT +  CE+C   K  R  F      T   L+ IHSDL GP    S
Sbjct: 406 LQELEKQGVLGNYKLTDLPFCEHCVFGKATRVKFAKAIHETQNQLDYIHSDLWGPSRVPS 465

Query: 467 YGEKKVYSNL 438
            G  + +  L
Sbjct: 466 IGGARYFLTL 475


>gb|ABR16307.1| unknown [Picea sitchensis]
          Length = 407

 Score =  139 bits (350), Expect(2) = 5e-43
 Identities = 67/132 (50%), Positives = 88/132 (66%)
 Frame = -2

Query: 475 HYPMEKKRYILTFTDDFSKMTWSYLLKNKSEVFETFVIFRKRVQTQTNTKIKCFRSDNGT 296
           H  +   RY+LTF DD+S+  W Y LKNK EVFE F  F+  V+ Q+   IK  R+DNG 
Sbjct: 147 HPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGK 206

Query: 295 EFTSNEFIMFFQDKGIKRELTTPYTPQQNGVSERKNRTLIEMVRSLLISSHLSQRWWGEA 116
           E+ + EF  + +  GIKRE T PYTPQQNGV+ERKNRTL+EM R +L + ++  ++W EA
Sbjct: 207 EYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEA 266

Query: 115 TLIATYILNLIP 80
              ATYI+N  P
Sbjct: 267 INTATYIVNRTP 278



 Score = 63.2 bits (152), Expect(2) = 5e-43
 Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
 Frame = -1

Query: 896 VEGLRRNLISLYQLVVDQYQIVAFKEPNGLVQCKITQDDKVITSGKEQNGL--FIMIPEQ 723
           V  L+ NL+S+ Q+    Y++  +K+   L++  I  + KV+ SG  +NGL  F      
Sbjct: 3   VPNLKSNLLSVNQIANQGYKVEFYKD-KCLIK-DINSNYKVVASGYVENGLYKFGRFTSN 60

Query: 722 TECYLTEEKNIN-LWHRRLGHIS--SIYLKKIGHAVNQGPKNLTTIENCENCCEAKMHRN 552
            +  + E  N++ LWH R+GH++  S+ L K    V   PK   +   CE C   K H  
Sbjct: 61  EKALVAEVDNVSRLWHERMGHLNYKSLSLMKRFEMVYGLPKISQSQGVCEGCMSGKQHME 120

Query: 551 PF-PSRTRSTDTILEIIHSDLCGPI 480
            F   ++    T L ++HSDL GP+
Sbjct: 121 KFIKGKSWRAKTPLHLVHSDLMGPL 145


>gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 822

 Score =  131 bits (329), Expect(3) = 6e-43
 Identities = 64/133 (48%), Positives = 86/133 (64%)
 Frame = -2

Query: 454 RYILTFTDDFSKMTWSYLLKNKSEVFETFVIFRKRVQTQTNTKIKCFRSDNGTEFTSNEF 275
           RYILTF DD ++M W Y LK KSEVF+TF  F+  V+   N +IK  R D GTE+ S EF
Sbjct: 239 RYILTFIDDATRMVWVYFLKAKSEVFQTFKKFKNLVENNANCRIKKLRIDRGTEYLSKEF 298

Query: 274 IMFFQDKGIKRELTTPYTPQQNGVSERKNRTLIEMVRSLLISSHLSQRWWGEATLIATYI 95
             F +  GI+R+LT  Y+PQQN VSER+NR+L+EM R+++ +  L  + W EA  +A Y 
Sbjct: 299 SEFLEGNGIERQLTAAYSPQQNEVSERRNRSLVEMARAMIKAKDLPLKLWAEAVHVAAYA 358

Query: 94  LNLIPRKDLNWQT 56
            N  P + L  +T
Sbjct: 359 QNRTPTRTLKNKT 371



 Score = 67.0 bits (162), Expect(3) = 6e-43
 Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 7/168 (4%)
 Frame = -1

Query: 962 KGYGDIILNFGKNKILLKNTYYVEGLRRNLISLYQLVVDQYQIVAFKEPNGLVQCKITQD 783
           +G GDI +   K+K  +++   V  L +NL+S+ Q++++ YQ+           C I   
Sbjct: 69  EGKGDIEVMTRKDKRGIRDVLLVPKLGKNLLSVPQMIINGYQVTLKNN-----YCTIHDS 123

Query: 782 -DKVITSGKEQNGLFIM--IPEQTECYLTEEKNINLWHRRLGHI--SSIYLKKIGHAVNQ 618
             K I   +  N  F +  +  +    + +++   LWH+RLGH   S++ + +    V  
Sbjct: 124 ARKKIGEVEMVNKSFHLRWLSNEETAMVAKDEATELWHKRLGHTGHSNLKILQSKEMVTG 183

Query: 617 GPKNLTTIENCENCCEAKMHRNPFP--SRTRSTDTILEIIHSDLCGPI 480
            PK       CE+C  +K  R+PFP  S TR+    LE+IHSD+CGP+
Sbjct: 184 LPKFNVEEGKCESCILSKHSRDPFPKESETRAKHK-LELIHSDVCGPM 230



 Score = 24.6 bits (52), Expect(3) = 6e-43
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 77  KRLKLANPFEL*FKMKPTVSHLRVF 3
           + LK   P E     KP+VSH++VF
Sbjct: 365 RTLKNKTPLEAWSDSKPSVSHMKVF 389


>emb|CAN68340.1| hypothetical protein VITISV_025981 [Vitis vinifera]
          Length = 791

 Score =  137 bits (345), Expect(2) = 7e-43
 Identities = 69/139 (49%), Positives = 91/139 (65%)
 Frame = -2

Query: 454 RYILTFTDDFSKMTWSYLLKNKSEVFETFVIFRKRVQTQTNTKIKCFRSDNGTEFTSNEF 275
           RY LTF DD S+ T+ +LLKNKSE F  F ++  +V+ Q    IK  RSD G E+ S+EF
Sbjct: 495 RYFLTFIDDCSRFTYVFLLKNKSETFNAFKVYNAKVENQLGKNIKVLRSDRGGEYFSSEF 554

Query: 274 IMFFQDKGIKRELTTPYTPQQNGVSERKNRTLIEMVRSLLISSHLSQRWWGEATLIATYI 95
             F ++ GI  E T PYTPQ NG++ERKNRT +EMV ++L+ + L+   WGEA LIA +I
Sbjct: 555 NSFCEEYGIIHECTAPYTPQHNGIAERKNRTFLEMVNAMLLHAKLNFNLWGEALLIACHI 614

Query: 94  LNLIPRKDLNWQTLSSYDL 38
           LN IP K      +S Y+L
Sbjct: 615 LNRIPMKK---NEISPYEL 630



 Score = 64.7 bits (156), Expect(2) = 7e-43
 Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 10/197 (5%)
 Frame = -1

Query: 1007 GERVVKTAGKEQLAIKGYGDIILNFGKNK-ILLKNTYYVEGLRRNLISLYQLVVDQYQIV 831
            G++ V+   + +  + G G I + F   K + L N  YV  + +NL+S   L    ++ V
Sbjct: 310  GDQEVQMGNEGRSKVLGKGTIEVAFTSGKRVTLINVLYVPDMNKNLVSGDLLGKPSFKAV 369

Query: 830  AFKEPNGLVQCKITQDDKVITSGKEQNGLF-------IMIPEQTECYLTEEKNINLWHRR 672
               E   L+   +++    + +G   +G+        I+    T  Y+ +  ++ LWH R
Sbjct: 370  F--ESGKLI---LSKSGNFVGNGYSCDGMIKLCTNDNIIKMASTSAYMCDSNSLILWHNR 424

Query: 671  LGHISSIYLKKIGHAVNQGPKNLTT--IENCENCCEAKMHRNPFPSRTRSTDTILEIIHS 498
            L H+    +K+I   V  G     T   E CE C ++KM + PF S  RS++ +L++IHS
Sbjct: 425  LAHVGLSIIKRI---VKCGLIACDTKKFEKCEICVKSKMIKKPFHSVERSSN-LLDLIHS 480

Query: 497  DLCGPISPLSYGEKKVY 447
            DLC     L+ G  + +
Sbjct: 481  DLCELNGMLTRGGNRYF 497


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  117 bits (292), Expect(2) = 1e-42
 Identities = 61/130 (46%), Positives = 81/130 (62%)
 Frame = -2

Query: 454 RYILTFTDDFSKMTWSYLLKNKSEVFETFVIFRKRVQTQTNTKIKCFRSDNGTEFTSNEF 275
           +Y +TFTDD+S+  + YL+++KSE FE F  F+  VQ Q    IK  RSD G EF S EF
Sbjct: 604 QYFITFTDDYSRYGYIYLMRHKSESFEKFKEFQNEVQNQLGKTIKSLRSDRGGEFLSQEF 663

Query: 274 IMFFQDKGIKRELTTPYTPQQNGVSERKNRTLIEMVRSLLISSHLSQRWWGEATLIATYI 95
               +  GI  +LT P TPQ NGVSER NRTL++MVR ++  S L   +WG A   A + 
Sbjct: 664 GNHLKQCGIVPQLTPPSTPQWNGVSERCNRTLLDMVRLMMSQSDLPLYFWGYALETAAFT 723

Query: 94  LNLIPRKDLN 65
           LN +P K ++
Sbjct: 724 LNRVPSKSVD 733



 Score = 84.3 bits (207), Expect(2) = 1e-42
 Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 9/191 (4%)
 Frame = -1

Query: 1007 GERVVKTAGKEQLAIKGYGDIILNFGKNKIL-LKNTYYVEGLRRNLISLYQLVVDQYQIV 831
            GE  ++   K ++A      + L      I+ L N YYV  + RN+IS   L+ + Y+ +
Sbjct: 416  GEMDLRVGNKAKVAALSAETLPLVLPSGFIMELNNCYYVPAMSRNIISASCLMTEGYKFI 475

Query: 830  AFKEPNGLVQCKITQDDKVITSGKEQNGLFIMIPEQTECYLTEEKNIN--------LWHR 675
               E +G   C I  +D         NGLFI+  +    +    K +         +WH 
Sbjct: 476  I--EDHG---CSIFLNDMFYGYAPVLNGLFILNLDDAPIFNINAKRLRPNNMNSTFIWHC 530

Query: 674  RLGHISSIYLKKIGHAVNQGPKNLTTIENCENCCEAKMHRNPFPSRTRSTDTILEIIHSD 495
            RLGHIS   +KK+         +L + E CE+C   KM + PF  R      +L +IH+D
Sbjct: 531  RLGHISEKRMKKLHDDGILNSFDLESFETCESCILGKMTKTPFTGRNERASDLLALIHTD 590

Query: 494  LCGPISPLSYG 462
            +CGP+S  + G
Sbjct: 591  VCGPMSTTARG 601


>dbj|BAB03249.1| polyprotein [Oryza sativa]
          Length = 1268

 Score =  133 bits (335), Expect(2) = 1e-42
 Identities = 64/128 (50%), Positives = 85/128 (66%)
 Frame = -2

Query: 457 KRYILTFTDDFSKMTWSYLLKNKSEVFETFVIFRKRVQTQTNTKIKCFRSDNGTEFTSNE 278
           K+Y +T  DD ++  + YLLK K E    F I++  V+ Q   KIK  RSD G E+ SNE
Sbjct: 474 KKYFMTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNE 533

Query: 277 FIMFFQDKGIKRELTTPYTPQQNGVSERKNRTLIEMVRSLLISSHLSQRWWGEATLIATY 98
           F  F ++ GI  E+T PY+PQ NGV+ERKNRTL EMV ++L ++ LS+ WWGEA L A +
Sbjct: 534 FASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACH 593

Query: 97  ILNLIPRK 74
           +LN IP K
Sbjct: 594 VLNKIPMK 601



 Score = 67.8 bits (164), Expect(2) = 1e-42
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 7/184 (3%)
 Frame = -1

Query: 968 AIKGYGDIILNFGKNK-ILLKNTYYVEGLRRNLISLYQLVVDQYQIVAFKEPNGLVQCKI 792
           A+ G G + L F   K + LKN  +V  +++NL+S   L  + +++V   E N   +C +
Sbjct: 302 AVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREDFRLVF--ESN---KCVV 356

Query: 791 TQDDKVITSGKEQNGLF------IMIPEQTECYLTEEKNINLWHRRLGHISSIYLKKIGH 630
           ++ +  +  G +  GLF      +        +++E    N+WH RL H++   + ++ +
Sbjct: 357 SKYETFVGKGYDSGGLFRFSLNDMCNNHNAVNHISENDESNVWHSRLCHVNFGCMTRLAN 416

Query: 629 AVNQGPKNLTTIENCENCCEAKMHRNPFPSRTRSTDTILEIIHSDLCGPISPLSYGEKKV 450
                   L     C  C ++K  R P  +        LE++HSDLC     L+ G KK 
Sbjct: 417 MSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKY 476

Query: 449 YSNL 438
           +  L
Sbjct: 477 FMTL 480


>gb|ABA96257.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 580

 Score =  132 bits (332), Expect(2) = 1e-42
 Identities = 64/128 (50%), Positives = 83/128 (64%)
 Frame = -2

Query: 457 KRYILTFTDDFSKMTWSYLLKNKSEVFETFVIFRKRVQTQTNTKIKCFRSDNGTEFTSNE 278
           K+Y +T TDD ++  + YLLK K E    F I++  V+ Q   KIK  RSD G E+ SNE
Sbjct: 299 KKYFMTLTDDCTRFCYVYLLKRKDEALHYFKIYKAEVENQLERKIKRLRSDRGREYFSNE 358

Query: 277 FIMFFQDKGIKRELTTPYTPQQNGVSERKNRTLIEMVRSLLISSHLSQRWWGEATLIATY 98
           F  F ++ GI  E T PY PQ NGV+ERKNRTL E+V ++L ++ L + WWGEA L A Y
Sbjct: 359 FASFCEEFGIIHERTPPYLPQSNGVAERKNRTLAEIVNAMLDTTGLCKEWWGEAVLTACY 418

Query: 97  ILNLIPRK 74
           +LN IP K
Sbjct: 419 VLNKIPMK 426



 Score = 68.9 bits (167), Expect(2) = 1e-42
 Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 7/184 (3%)
 Frame = -1

Query: 968 AIKGYGDIILNFGK-NKILLKNTYYVEGLRRNLISLYQLVVDQYQIVAFKEPNGLVQCKI 792
           A+ G G I L F   N + LKN  +V  +++NL+S   L  + +++V   E N   +C +
Sbjct: 127 AVHGVGTIDLKFTSGNTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVF--ESN---KCVV 181

Query: 791 TQDDKVITSGKEQNGLF------IMIPEQTECYLTEEKNINLWHRRLGHISSIYLKKIGH 630
           ++ +  +  G +  GLF      +        +++E    N+WH RL H++   + ++ +
Sbjct: 182 SKYETFVGKGYDSGGLFRFALNDMCNNHNAVNHISENDESNVWHSRLCHVNFGCMTRLAN 241

Query: 629 AVNQGPKNLTTIENCENCCEAKMHRNPFPSRTRSTDTILEIIHSDLCGPISPLSYGEKKV 450
                   L     C  C ++K  R P  +        LE++HSDLC   S L+ G KK 
Sbjct: 242 MSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNSVLTKGGKKY 301

Query: 449 YSNL 438
           +  L
Sbjct: 302 FMTL 305


>gb|AAV32100.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1388

 Score =  133 bits (335), Expect(2) = 1e-42
 Identities = 64/128 (50%), Positives = 85/128 (66%)
 Frame = -2

Query: 457  KRYILTFTDDFSKMTWSYLLKNKSEVFETFVIFRKRVQTQTNTKIKCFRSDNGTEFTSNE 278
            K+Y +T  DD ++  + YLLK K E    F I++  V+ Q   KIK  RSD G E+ SNE
Sbjct: 637  KKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNE 696

Query: 277  FIMFFQDKGIKRELTTPYTPQQNGVSERKNRTLIEMVRSLLISSHLSQRWWGEATLIATY 98
            F  F ++ GI  E+T PY+PQ NGV+ERKNRTL EMV ++L ++ LS+ WWGEA L A +
Sbjct: 697  FASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACH 756

Query: 97   ILNLIPRK 74
            +LN IP K
Sbjct: 757  VLNKIPMK 764



 Score = 67.4 bits (163), Expect(2) = 1e-42
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 7/184 (3%)
 Frame = -1

Query: 968  AIKGYGDIILNFGKNK-ILLKNTYYVEGLRRNLISLYQLVVDQYQIVAFKEPNGLVQCKI 792
            A+ G G + L F   K + LKN ++V  +++NL+S   L  + +++V   E N   +C +
Sbjct: 465  AVHGVGTVDLKFTSGKTVQLKNVHHVPSIKKNLVSGSVLCREGFRLVF--ESN---KCVV 519

Query: 791  TQDDKVITSGKEQNGLF------IMIPEQTECYLTEEKNINLWHRRLGHISSIYLKKIGH 630
            ++    +  G +  GLF      +        +++E    N+WH RL H++   + ++ +
Sbjct: 520  SKYGTFVGKGYDNGGLFRFSLNDMCNNHNAVNHISENDESNVWHSRLCHVNFDCMTRLAN 579

Query: 629  AVNQGPKNLTTIENCENCCEAKMHRNPFPSRTRSTDTILEIIHSDLCGPISPLSYGEKKV 450
                    L     C  C ++K  R P  +        LE++HSDLC     L+ G KK 
Sbjct: 580  MSLIPKFTLVKGSKCHTCVQSKQPRKPHKASKARNLAPLELVHSDLCEMNGVLTKGGKKY 639

Query: 449  YSNL 438
            +  L
Sbjct: 640  FMTL 643


>gb|AAK73108.1|AF391808_10 Fourf gag/pol protein [Zea mays] gi|168251067|gb|ACA21850.1| Fourf
           gag/pol protein [Zea mays]
          Length = 1279

 Score =  130 bits (326), Expect(2) = 1e-42
 Identities = 63/129 (48%), Positives = 85/129 (65%)
 Frame = -2

Query: 457 KRYILTFTDDFSKMTWSYLLKNKSEVFETFVIFRKRVQTQTNTKIKCFRSDNGTEFTSNE 278
           KRY LTF DD ++  + YLLK K E F  F  ++  V+ Q   KIK  RSD G EF SN 
Sbjct: 483 KRYFLTFIDDSTRFCYVYLLKTKDEAFNYFKAYKAEVENQLERKIKRLRSDRGGEFFSNL 542

Query: 277 FIMFFQDKGIKRELTTPYTPQQNGVSERKNRTLIEMVRSLLISSHLSQRWWGEATLIATY 98
           F  F  + GI  E T P++PQ NG++ERKNRTL ++V ++L ++ LS+ WWGEA LIA +
Sbjct: 543 FDEFCVEHGIIHERTPPFSPQSNGIAERKNRTLTDLVNAMLSTAGLSKAWWGEAILIACH 602

Query: 97  ILNLIPRKD 71
           +LN +P K+
Sbjct: 603 VLNRVPTKN 611



 Score = 70.9 bits (172), Expect(2) = 1e-42
 Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 6/179 (3%)
 Frame = -1

Query: 965 IKGYGDIILNFGKNKIL-LKNTYYVEGLRRNLISLYQLVVDQYQIVAFKEPNGLVQCKIT 789
           + G G +IL F   K + LK+  +V  +++NL+S   L  D Y++V   E N   +C ++
Sbjct: 314 VLGVGTVILKFTSGKTVPLKSVQHVPSIKKNLVSASMLCRDGYKVVL--ESN---KCVVS 368

Query: 788 QDDKVITSGKEQNGLFIMIPEQTECYLTEEKNIN----LWHRRLGHISSIYLKKIGHAVN 621
           +    +  G E  GLF +        L    N +    LWH R  H S   L ++ + +N
Sbjct: 369 KHGTFVGKGYECGGLFRLSLHDVCNKLVNSVNFSDESDLWHSRFCHASFGCLMRLAN-IN 427

Query: 620 QGPK-NLTTIENCENCCEAKMHRNPFPSRTRSTDTILEIIHSDLCGPISPLSYGEKKVY 447
             PK NL     C  C E+K  R P  +    +   LE++HSDLC     L+ G K+ +
Sbjct: 428 LIPKFNLVKKSKCHVCVESKQPRKPHKAAEARSLAPLELVHSDLCEMNGILTKGGKRYF 486