BLASTX nr result
ID: Ephedra26_contig00012467
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00012467
(794 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 477 e-132
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 476 e-132
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 476 e-132
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 476 e-132
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 474 e-131
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 472 e-131
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 468 e-130
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 466 e-129
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 457 e-126
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 382 e-104
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 323 4e-86
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a... 299 7e-79
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus] 288 2e-75
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5... 288 2e-75
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2... 279 9e-73
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082... 263 5e-68
gb|ACS28233.1| replicase [Alternanthera mosaic virus] 262 1e-67
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai... 261 2e-67
gb|ACS28228.1| replicase [Alternanthera mosaic virus] 260 4e-67
ref|YP_002341559.1| replication-associated protein [Schlumberger... 249 8e-64
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 477 bits (1228), Expect = e-132
Identities = 227/264 (85%), Positives = 244/264 (92%)
Frame = +1
Query: 1 QTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAF 180
QTDPSTG+ IMPI D R+LP+A +P HW+ P K++ TLR LNRFPTPW PDRARARAF
Sbjct: 547 QTDPSTGQPIMPITDTRELPRAIMPAHWDSPQFEKIIATLRNLNRFPTPWSPDRARARAF 606
Query: 181 TSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNP 360
TSDVKNSRTGKALHRE+QTWKETQTMLT+N + AISVIHGAGGSGKSQALQTLLRQNP
Sbjct: 607 TSDVKNSRTGKALHRESQTWKETQTMLTDNAEIHTAISVIHGAGGSGKSQALQTLLRQNP 666
Query: 361 ELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAF 540
+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S+ PVVIFDDYGKLPQGYIEAF
Sbjct: 667 DLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSRGPVVIFDDYGKLPQGYIEAF 726
Query: 541 AMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLAN 720
AMTHA+LEL+ILTGDPRQSTHHEANEEALISKL+PATT FSELSRYYINATHRNSKFLAN
Sbjct: 727 AMTHANLELIILTGDPRQSTHHEANEEALISKLSPATTTFSELSRYYINATHRNSKFLAN 786
Query: 721 KLGVYSSNSCPLKVTYGFQPQPGM 792
KLG+YSSN CPLKVTYGFQPQPG+
Sbjct: 787 KLGIYSSNHCPLKVTYGFQPQPGL 810
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 476 bits (1226), Expect = e-132
Identities = 230/264 (87%), Positives = 244/264 (92%)
Frame = +1
Query: 1 QTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAF 180
QTDPSTGE+IMPI D R+LP+A HW P + ++L+TLRGLNR+PTPW PDRARA+AF
Sbjct: 559 QTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAF 618
Query: 181 TSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNP 360
TSDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISVIHGAGGSGKSQALQTLLRQ P
Sbjct: 619 TSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYP 678
Query: 361 ELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAF 540
LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAF
Sbjct: 679 NLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAF 738
Query: 541 AMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLAN 720
AMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLAN
Sbjct: 739 AMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLAN 798
Query: 721 KLGVYSSNSCPLKVTYGFQPQPGM 792
KLGVYSSNSCPLKVTYGFQPQPG+
Sbjct: 799 KLGVYSSNSCPLKVTYGFQPQPGL 822
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 476 bits (1226), Expect = e-132
Identities = 230/264 (87%), Positives = 244/264 (92%)
Frame = +1
Query: 1 QTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAF 180
QTDPSTGE+IMPI D R+LP+A HW P + ++L+TLRGLNR+PTPW PDRARA+AF
Sbjct: 559 QTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAF 618
Query: 181 TSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNP 360
TSDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISVIHGAGGSGKSQALQTLLRQ P
Sbjct: 619 TSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYP 678
Query: 361 ELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAF 540
LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAF
Sbjct: 679 NLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAF 738
Query: 541 AMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLAN 720
AMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLAN
Sbjct: 739 AMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLAN 798
Query: 721 KLGVYSSNSCPLKVTYGFQPQPGM 792
KLGVYSSNSCPLKVTYGFQPQPG+
Sbjct: 799 KLGVYSSNSCPLKVTYGFQPQPGL 822
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 476 bits (1226), Expect = e-132
Identities = 230/264 (87%), Positives = 244/264 (92%)
Frame = +1
Query: 1 QTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAF 180
QTDPSTGE+IMPI D R+LP+A HW P + ++L+TLRGLNR+PTPW PDRARA+AF
Sbjct: 559 QTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAF 618
Query: 181 TSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNP 360
TSDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISVIHGAGGSGKSQALQTLLRQ P
Sbjct: 619 TSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYP 678
Query: 361 ELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAF 540
LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAF
Sbjct: 679 NLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAF 738
Query: 541 AMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLAN 720
AMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLAN
Sbjct: 739 AMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLAN 798
Query: 721 KLGVYSSNSCPLKVTYGFQPQPGM 792
KLGVYSSNSCPLKVTYGFQPQPG+
Sbjct: 799 KLGVYSSNSCPLKVTYGFQPQPGL 822
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 474 bits (1220), Expect = e-131
Identities = 229/264 (86%), Positives = 243/264 (92%)
Frame = +1
Query: 1 QTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAF 180
QTDPSTGE+IMPI D R+LP+A HW P + ++L+TLR LNR+PTPW PDRARA+AF
Sbjct: 559 QTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAF 618
Query: 181 TSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNP 360
TSDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISVIHGAGGSGKSQALQTLLRQ P
Sbjct: 619 TSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYP 678
Query: 361 ELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAF 540
LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAF
Sbjct: 679 NLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAF 738
Query: 541 AMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLAN 720
AMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLAN
Sbjct: 739 AMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLAN 798
Query: 721 KLGVYSSNSCPLKVTYGFQPQPGM 792
KLGVYSSNSCPLKVTYGFQPQPG+
Sbjct: 799 KLGVYSSNSCPLKVTYGFQPQPGL 822
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 472 bits (1214), Expect = e-131
Identities = 228/264 (86%), Positives = 242/264 (91%)
Frame = +1
Query: 1 QTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAF 180
QTDPSTGE+IMPI D R+LP+A HW P + ++L+TLR LNR+PTPW PDRARA+AF
Sbjct: 559 QTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAF 618
Query: 181 TSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNP 360
TSDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISVIHGAGGSGKSQALQTLLRQ P
Sbjct: 619 TSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYP 678
Query: 361 ELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAF 540
LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAF
Sbjct: 679 NLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAF 738
Query: 541 AMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLAN 720
AMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSK LAN
Sbjct: 739 AMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKLLAN 798
Query: 721 KLGVYSSNSCPLKVTYGFQPQPGM 792
KLGVYSSNSCPLKVTYGFQPQPG+
Sbjct: 799 KLGVYSSNSCPLKVTYGFQPQPGL 822
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 468 bits (1205), Expect = e-130
Identities = 226/264 (85%), Positives = 242/264 (91%)
Frame = +1
Query: 1 QTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAF 180
QTDPSTGE+IMPI D R+LP+A HW P ++++L+TLR LNR+PTPW PDRARA+AF
Sbjct: 559 QTDPSTGEMIMPITDTRELPRADGHAHWQGPDMARILSTLRSLNRYPTPWNPDRARAKAF 618
Query: 181 TSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNP 360
TSDVKNSRTGKALHRE+Q WKETQ MLTEN NLAISVIHGAGGSGKSQALQTLLRQ P
Sbjct: 619 TSDVKNSRTGKALHRESQVWKETQAMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYP 678
Query: 361 ELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAF 540
LPIEVVLPTNELRLDW KKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAF
Sbjct: 679 NLPIEVVLPTNELRLDWPKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAF 738
Query: 541 AMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLAN 720
AMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLAN
Sbjct: 739 AMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLAN 798
Query: 721 KLGVYSSNSCPLKVTYGFQPQPGM 792
KLGVYSSNSCPLKVTYGFQP+PG+
Sbjct: 799 KLGVYSSNSCPLKVTYGFQPRPGL 822
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 466 bits (1198), Expect = e-129
Identities = 223/264 (84%), Positives = 240/264 (90%)
Frame = +1
Query: 1 QTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAF 180
QTDPSTGE+IMPI D R+LP+A HW P + ++++TLR NR+PTPW PDR+RA+AF
Sbjct: 559 QTDPSTGEMIMPITDTRELPRAEGHAHWQGPDMERIISTLRSFNRYPTPWNPDRSRAKAF 618
Query: 181 TSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNP 360
TSDVKNSRTGKALHRE+Q WKETQTML EN NLAISVIHGAGGSGKSQALQTLLRQ P
Sbjct: 619 TSDVKNSRTGKALHRESQVWKETQTMLAENSQTNLAISVIHGAGGSGKSQALQTLLRQYP 678
Query: 361 ELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAF 540
LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAF
Sbjct: 679 NLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAF 738
Query: 541 AMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLAN 720
A+THASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLAN
Sbjct: 739 ALTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLAN 798
Query: 721 KLGVYSSNSCPLKVTYGFQPQPGM 792
KLGVYSSN CPLKVTYGFQPQPG+
Sbjct: 799 KLGVYSSNPCPLKVTYGFQPQPGL 822
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 457 bits (1177), Expect = e-126
Identities = 222/264 (84%), Positives = 238/264 (90%)
Frame = +1
Query: 1 QTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAF 180
Q DPSTGE+IMPI D ++LP+ATLP HW L ++L+TLR LNRFPTPW PDR RARAF
Sbjct: 564 QHDPSTGEMIMPITDTQELPRATLPAHWQGHNLERILSTLRSLNRFPTPWSPDRTRARAF 623
Query: 181 TSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNP 360
TSDVKNSRTGKALHRE+QTWKETQTMLTEN LAISVIHGAGGSGKSQALQTLLRQ+
Sbjct: 624 TSDVKNSRTGKALHRESQTWKETQTMLTENTQTELAISVIHGAGGSGKSQALQTLLRQDH 683
Query: 361 ELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAF 540
LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S SPVVIFDDYGKLPQGY+EAF
Sbjct: 684 SLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSHSPVVIFDDYGKLPQGYLEAF 743
Query: 541 AMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLAN 720
A+THA+LELVILTGDPRQSTHHE+NEEALISKL PATTI+S SRYYINAT RNSKFLAN
Sbjct: 744 ALTHANLELVILTGDPRQSTHHESNEEALISKLPPATTIYSAFSRYYINATLRNSKFLAN 803
Query: 721 KLGVYSSNSCPLKVTYGFQPQPGM 792
KLGVYS+NSCPL VTYGFQP PG+
Sbjct: 804 KLGVYSANSCPLNVTYGFQPLPGL 827
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 382 bits (982), Expect = e-104
Identities = 185/265 (69%), Positives = 215/265 (81%), Gaps = 1/265 (0%)
Frame = +1
Query: 1 QTDPSTGEVIMPIADVRDLPKATLPEHWNEPG-LSKVLTTLRGLNRFPTPWCPDRARARA 177
QTDP IMPI D++ LP T E+ + KV+ TL+ LNR PTPW PDR RARA
Sbjct: 539 QTDPRDHSTIMPITDIQTLPHETFDEYDSTSSPFDKVVITLKQLNRSPTPWTPDRLRARA 598
Query: 178 FTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQN 357
+ SD+KNSRTGKALH+E+Q WKETQT LTE L +SVIHGAGGSGKSQALQT+LR +
Sbjct: 599 YASDIKNSRTGKALHKESQNWKETQTRLTETSETRLGLSVIHGAGGSGKSQALQTMLRNH 658
Query: 358 PELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEA 537
P+LP+EVVLPTNELR DWL+KLPHNPPEQFRTFERAFV S +PVVIFDDYGKLPQG++EA
Sbjct: 659 PDLPVEVVLPTNELRXDWLRKLPHNPPEQFRTFERAFVSSTAPVVIFDDYGKLPQGFLEA 718
Query: 538 FAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLA 717
FA+ L+L ILTGDPRQSTHHE+NE+A+I++L PAT IFS L RYYINATHRN K LA
Sbjct: 719 FALCRPGLKLAILTGDPRQSTHHESNEQAMIAQLEPATKIFSALCRYYINATHRNVKELA 778
Query: 718 NKLGVYSSNSCPLKVTYGFQPQPGM 792
NKLGVYSSN PL V+YGF+P+PG+
Sbjct: 779 NKLGVYSSNPSPLHVSYGFRPEPGL 803
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 323 bits (828), Expect = 4e-86
Identities = 153/260 (58%), Positives = 198/260 (76%)
Frame = +1
Query: 1 QTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAF 180
Q P T +IMPI D+ K +P H ++L L+ L+R PT W PD RA++F
Sbjct: 638 QISPITKSMIMPITDI----KTGIPVHRETKAPQELLDLLKALSRMPTLWTPDTLRAKSF 693
Query: 181 TSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNP 360
TSD+KN RTGK L +E+Q+WKE QT+ ++ + +SVIHGAGGSGKS ALQ LLR +P
Sbjct: 694 TSDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRPVPLSVIHGAGGSGKSAALQDLLRDHP 753
Query: 361 ELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAF 540
ELPI+V+LPTNELR+DWL KLP N PE FRTFE+A++ + +P +I DDYGKLPQGY+EAF
Sbjct: 754 ELPIQVILPTNELRMDWLSKLPRNRPENFRTFEKAYLQTNAPSIIMDDYGKLPQGYVEAF 813
Query: 541 AMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLAN 720
A+TH ++EL++LTGD +QS HHE NE+A+I++L P+T IFS+ SRYYINATHRN+K LAN
Sbjct: 814 AVTHPNVELIVLTGDNKQSVHHETNEQAMIAQLEPSTQIFSQFSRYYINATHRNAKKLAN 873
Query: 721 KLGVYSSNSCPLKVTYGFQP 780
LGVYS N+ LK+T+GFQP
Sbjct: 874 MLGVYSDNNKELKITHGFQP 893
>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 711
Score = 299 bits (766), Expect = 7e-79
Identities = 144/153 (94%), Positives = 149/153 (97%)
Frame = +1
Query: 334 LQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGK 513
LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGK
Sbjct: 1 LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60
Query: 514 LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINAT 693
LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINAT
Sbjct: 61 LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINAT 120
Query: 694 HRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGM 792
HRNSKFLANKLGVYSSNSCPLKVTYG QPQPG+
Sbjct: 121 HRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGL 153
>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 288 bits (737), Expect = 2e-75
Identities = 148/261 (56%), Positives = 180/261 (68%), Gaps = 1/261 (0%)
Frame = +1
Query: 1 QTDPSTGEVIMPIAD-VRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARA 177
Q P VIMPI + V LP + + H V+ L L+R PTPW P RAR+
Sbjct: 571 QRSPHDNSVIMPITNIVSGLPISQIQGH------ELVMGVLEKLSRKPTPWTPCPLRARS 624
Query: 178 FTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQN 357
+TSD+KN RTG L +E+ TWKETQT+ E + + +SVIHG GGSGKS A Q LLRQ+
Sbjct: 625 YTSDIKNHRTGALLLKESATWKETQTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQH 684
Query: 358 PELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEA 537
P++ ++VVLPTNELRLDW+ K P PE+ +T+ERAF SPVV+FDDYGKLP GYIEA
Sbjct: 685 PDVDLQVVLPTNELRLDWMAKAPKVRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEA 744
Query: 538 FAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLA 717
+ +ELVILTGD RQSTHHE NE+A+IS+LAPAT +F L RYYINATHRN + LA
Sbjct: 745 YVAVQTRVELVILTGDARQSTHHENNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLA 804
Query: 718 NKLGVYSSNSCPLKVTYGFQP 780
NKL VYS K+T GFQP
Sbjct: 805 NKLEVYSEKEGETKITMGFQP 825
>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 288 bits (737), Expect = 2e-75
Identities = 148/261 (56%), Positives = 180/261 (68%), Gaps = 1/261 (0%)
Frame = +1
Query: 1 QTDPSTGEVIMPIAD-VRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARA 177
Q P VIMPI + V LP + + H V+ L L+R PTPW P RAR+
Sbjct: 571 QRSPHDNSVIMPITNIVSGLPISQIQGH------ELVMGVLEKLSRKPTPWTPCPLRARS 624
Query: 178 FTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQN 357
+TSD+KN RTG L +E+ TWKETQT+ E + + +SVIHG GGSGKS A Q LLRQ+
Sbjct: 625 YTSDIKNHRTGALLLKESATWKETQTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQH 684
Query: 358 PELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEA 537
P++ ++VVLPTNELRLDW+ K P PE+ +T+ERAF SPVV+FDDYGKLP GYIEA
Sbjct: 685 PDVDLQVVLPTNELRLDWMAKAPKVRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEA 744
Query: 538 FAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLA 717
+ +ELVILTGD RQSTHHE NE+A+IS+LAPAT +F L RYYINATHRN + LA
Sbjct: 745 YVAVQTRVELVILTGDARQSTHHENNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLA 804
Query: 718 NKLGVYSSNSCPLKVTYGFQP 780
NKL VYS K+T GFQP
Sbjct: 805 NKLEVYSEKEGETKITMGFQP 825
>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
RecName: Full=RNA replication protein; AltName: Full=176
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
protein product [Papaya mosaic virus]
gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
virus]
Length = 1547
Score = 279 bits (713), Expect = 9e-73
Identities = 149/264 (56%), Positives = 183/264 (69%)
Frame = +1
Query: 1 QTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAF 180
Q DP+ G +I PI ++R +PK PE E V TL GL R PTP+ P+ RARA+
Sbjct: 727 QYDPN-GALISPIEEIRSMPKCK-PEGVPEV----VYKTLDGLARAPTPYSPNPIRARAY 780
Query: 181 TSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNP 360
TSDVKN R G L ++ + W L E LAISVIHGAGGSGKSQALQTL++ NP
Sbjct: 781 TSDVKNCRIGALLRQQGKEWGCRFDALVEAGKRELAISVIHGAGGSGKSQALQTLIKDNP 840
Query: 361 ELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAF 540
EL I VVLPTNELRLDWL+KLP P E+F+TFE+A + +P+VIFDDYGKLP GY+EAF
Sbjct: 841 ELDITVVLPTNELRLDWLRKLPKAPQEKFKTFEKALLAPPTPIVIFDDYGKLPAGYVEAF 900
Query: 541 AMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLAN 720
+ ++++L+ILTGD +QS HHE+NE A S + P SEL RYYINATHRN K LAN
Sbjct: 901 CLYFSTVQLIILTGDCKQSVHHESNENATTSSIEPLVKEASELCRYYINATHRNKKDLAN 960
Query: 721 KLGVYSSNSCPLKVTYGFQPQPGM 792
KLGVYS + +VT+G P PG+
Sbjct: 961 KLGVYSEKTGLTEVTHGTTPIPGL 984
>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
replicase [Alternanthera mosaic virus]
Length = 1541
Score = 263 bits (672), Expect = 5e-68
Identities = 141/264 (53%), Positives = 177/264 (67%)
Frame = +1
Query: 1 QTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAF 180
Q DP+ G +I PI ++ LPK + PE N P L K+L + R PTP+ P RA+A+
Sbjct: 721 QYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKMLNSQA---RAPTPFSPSPIRAKAY 774
Query: 181 TSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNP 360
+SDVKNSR G L ++ + W L EN LAISVIHGAGGSGKS+ALQ L+ NP
Sbjct: 775 SSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNP 834
Query: 361 ELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAF 540
+ + +VLPTNELRLDWLKKLP P +Q +TFE+A + P VIFDDYGKLP GYIEAF
Sbjct: 835 DADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPTKPTVIFDDYGKLPAGYIEAF 894
Query: 541 AMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLAN 720
+ +S EL++LTGD +QS HHE+NE A+ S + P T + SRYYINATHRN + LAN
Sbjct: 895 SFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLAN 954
Query: 721 KLGVYSSNSCPLKVTYGFQPQPGM 792
KLGVYS + +T G P PG+
Sbjct: 955 KLGVYSEVTGITSITQGNHPVPGL 978
>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 262 bits (669), Expect = 1e-67
Identities = 141/264 (53%), Positives = 177/264 (67%)
Frame = +1
Query: 1 QTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAF 180
Q DP+ G +I PI ++ LPK + PE N P L K+L R PTP+ P RA+A+
Sbjct: 721 QYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKMLNDQA---RAPTPFSPSPIRAKAY 774
Query: 181 TSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNP 360
+SDVKNSR G L ++ + W L EN LAISVIHGAGGSGKS+ALQ L+ NP
Sbjct: 775 SSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNP 834
Query: 361 ELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAF 540
+ + +VLPTNELRLDWLKKLP P +Q +TFE+A + P VIFDDYGKLP GYIEAF
Sbjct: 835 DADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPIKPTVIFDDYGKLPAGYIEAF 894
Query: 541 AMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLAN 720
+ +S+EL++LTGD +QS HHE+NE A+ S + P T + SRYYINATHRN + LAN
Sbjct: 895 SCYMSSVELLVLTGDSKQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLAN 954
Query: 721 KLGVYSSNSCPLKVTYGFQPQPGM 792
KLGVYS + +T G P PG+
Sbjct: 955 KLGVYSEVTGITSITQGNHPVPGL 978
>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
Length = 1541
Score = 261 bits (667), Expect = 2e-67
Identities = 141/264 (53%), Positives = 176/264 (66%)
Frame = +1
Query: 1 QTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAF 180
Q DP+ G +I PI V+ LPK + PE N P L K+L R PTP+ P RA+A+
Sbjct: 721 QYDPN-GALISPIESVKSLPKCS-PEKVN-PSLLKMLDDQA---RAPTPFSPSPIRAKAY 774
Query: 181 TSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNP 360
+SDVKNSR G L ++ + W L EN LAISVIHGAGGSGKS+ALQ L+ NP
Sbjct: 775 SSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNP 834
Query: 361 ELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAF 540
+ + +VLPTNELRLDWLKKLP P +Q +TFE+A + P VIFDDYGKLP GYIE+F
Sbjct: 835 DADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPTKPTVIFDDYGKLPAGYIESF 894
Query: 541 AMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLAN 720
+ +S EL++LTGD +QS HHE+NE A+ S + P T + SRYYINATHRN + LAN
Sbjct: 895 SFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLAN 954
Query: 721 KLGVYSSNSCPLKVTYGFQPQPGM 792
KLGVYS + +T G P PG+
Sbjct: 955 KLGVYSEVTGITSITQGNHPVPGL 978
>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 260 bits (664), Expect = 4e-67
Identities = 140/264 (53%), Positives = 176/264 (66%)
Frame = +1
Query: 1 QTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAF 180
Q DP+ G +I PI V+ LPK + PE +P L K+L R PTP+ P RA+A+
Sbjct: 721 QYDPN-GALISPIESVKSLPKCS-PEKV-DPSLLKMLDNQA---RAPTPFSPSPIRAKAY 774
Query: 181 TSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNP 360
+SDVKNSR G L ++ + W L EN LAISVIHGAGGSGKS+ALQ L+ NP
Sbjct: 775 SSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNP 834
Query: 361 ELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAF 540
+ + +VLPTNELRLDWLKKLP P +Q +TFE+A + P VIFDDYGKLP GYIE+F
Sbjct: 835 DADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPTKPTVIFDDYGKLPAGYIESF 894
Query: 541 AMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLAN 720
+ +S EL++LTGD +QS HHE+NE A+ S + P T + SRYYINATHRN + LAN
Sbjct: 895 SFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLAN 954
Query: 721 KLGVYSSNSCPLKVTYGFQPQPGM 792
KLGVYS + +T G P PG+
Sbjct: 955 KLGVYSEVTGITSITQGNHPVPGL 978
>ref|YP_002341559.1| replication-associated protein [Schlumbergera virus X]
gi|217316801|gb|AAR11537.2| replication-associated
protein [Schlumbergera virus X]
Length = 1545
Score = 249 bits (636), Expect = 8e-64
Identities = 131/263 (49%), Positives = 166/263 (63%)
Frame = +1
Query: 1 QTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAF 180
Q +P+ G +I PI D++ L K + PG+++VLT + +R PTP+ PD RA+AF
Sbjct: 736 QVNPNDGSLISPILDIKKLEKTPA----SHPGINEVLTCI---HRLPTPFTPDPLRAKAF 788
Query: 181 TSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNP 360
SDVKN R G L +++ W E + TE + +SVIHG GGSGKS ALQ LR NP
Sbjct: 789 GSDVKNLRIGALLKHQSKEWLEAFSRKTEMPPRTIGLSVIHGTGGSGKSHALQDFLRNNP 848
Query: 361 ELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAF 540
E I V+LPTNELRLDW +KLP P +TFE++ + S VVI DDY KLP G+IEA+
Sbjct: 849 EERITVILPTNELRLDWQRKLPQAHPNSLKTFEKSLLVGASSVVIMDDYTKLPAGFIEAY 908
Query: 541 AMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLAN 720
T++ LE +ILTGDP QS HHE NE AL SK+AP + I SRYY+NATHRN + LAN
Sbjct: 909 INTNSGLETLILTGDPNQSFHHEPNENALTSKIAPFSEIAQSFSRYYLNATHRNKRDLAN 968
Query: 721 KLGVYSSNSCPLKVTYGFQPQPG 789
L VYS +T PG
Sbjct: 969 MLAVYSEVEGTTNITMSSTVLPG 991