BLASTX nr result
ID: Ephedra26_contig00012133
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00012133
(1493 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [A... 424 e-116
ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citr... 410 e-111
ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein... 408 e-111
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta... 401 e-109
ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutr... 400 e-109
gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus... 398 e-108
ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp.... 398 e-108
ref|XP_002305685.1| plus-3 domain-containing family protein [Pop... 397 e-108
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein... 396 e-107
ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis th... 395 e-107
gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana] 395 e-107
gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao... 394 e-107
ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein... 392 e-106
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein... 392 e-106
ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Caps... 391 e-106
ref|XP_002316628.2| plus-3 domain-containing family protein [Pop... 390 e-106
gb|EXB82802.1| RNA polymerase-associated protein RTF1-like prote... 388 e-105
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein... 385 e-104
ref|XP_004493842.1| PREDICTED: RNA polymerase-associated protein... 384 e-104
ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like ... 382 e-103
>ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [Amborella trichopoda]
gi|548857220|gb|ERN15034.1| hypothetical protein
AMTR_s00032p00242160 [Amborella trichopoda]
Length = 624
Score = 424 bits (1089), Expect = e-116
Identities = 219/378 (57%), Positives = 282/378 (74%), Gaps = 2/378 (0%)
Frame = +1
Query: 94 SYADICKITIKRSKLAKWFMEPFFESIIEGCFVRLGIG-EKHGRRYYRLCRVKNVDASST 270
++ DI ITI+RS+LAKWF+EPFFE I GCFVR+GIG + G+ YRLC V+NVDAS
Sbjct: 255 TFEDIKGITIRRSRLAKWFLEPFFEEAIVGCFVRVGIGTSRSGQSIYRLCMVRNVDAS-- 312
Query: 271 DPKKKYTFEKRATFKYLNCFWGDESNAARWQMIRVSDSSPDELEYVDLREEMERKGGKMI 450
DP ++Y FE R T KYLNC WG E++AARWQM R+SDS+P E E+++ E+ER GG+M
Sbjct: 313 DPDRQYKFENRTTHKYLNCVWGSEASAARWQMARISDSAPLEKEFLEWVREVERGGGRMP 372
Query: 451 RTDEVEEKLTQLEQINN-YVYSAETVKQMLQEKKMASQRPSNIAAEKEKLRKELMHAESM 627
+V +K ++++++ +VYSA TVKQMLQEKK AS RPSNIAAEK++LRKE+ AES
Sbjct: 373 TKQDVIDKGEAIQRLSSSFVYSAATVKQMLQEKKSASTRPSNIAAEKDRLRKEMELAESR 432
Query: 628 EDQEEAERIRMKLRELEVISNQSKNKNEKALMLAEMNRKNRAENFRVASESKRANANLKA 807
D EAER+R +L+ELE +S QSK K+ KA+MLAEMNR+NRAENF+ ASE K N +LKA
Sbjct: 433 LDHAEAERVRARLQELENLSQQSKKKDAKAVMLAEMNRRNRAENFKNASELKPVNTSLKA 492
Query: 808 GEAGYDPFSRRWTRSHNYYASKVSNANESVPEAEKQPDEAKVEETEKDMKVAVEEGKLIN 987
GEAGYDPFSRRWTRS NYY SK E V E EA+ T+ ++ A + GKL++
Sbjct: 493 GEAGYDPFSRRWTRSRNYYVSKPEGGGEVVKE------EAETAATKAALEAAADAGKLVD 546
Query: 988 TEAPPCIGSKVHALHNFELDLSPDLLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGK 1167
T+AP G++ H+LH+FEL +S L R+GG QGA AFMAR+Q++EA G+ +P NDG+
Sbjct: 547 TKAPVDEGTESHSLHDFELPISLAGLQRFGGPQGAQLAFMARKQRIEATIGVRVPENDGR 606
Query: 1168 RHSLTLTVDDYKRRRGLM 1221
RHSLTL+V DYKRRRGL+
Sbjct: 607 RHSLTLSVSDYKRRRGLV 624
>ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citrus clementina]
gi|557524836|gb|ESR36142.1| hypothetical protein
CICLE_v10028000mg [Citrus clementina]
Length = 643
Score = 410 bits (1053), Expect = e-111
Identities = 225/423 (53%), Positives = 280/423 (66%), Gaps = 16/423 (3%)
Frame = +1
Query: 1 EGEANSESH---EGSPR-GNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFE 168
+ E+ S SH EGS G SG +Y DI +ITI+RSKLAKWFMEPFFE
Sbjct: 224 QSESESRSHSDDEGSTGDGGMADSDDDGAPGSGRPTYDDIKEITIRRSKLAKWFMEPFFE 283
Query: 169 SIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESN 348
+I GCFVR+GIG YRLC V+NVDA T+P + Y E R T KYLN WG+ES+
Sbjct: 284 ELIVGCFVRVGIGRSKNGPIYRLCMVRNVDA--TEPDRSYKLENRTTCKYLNVTWGNESS 341
Query: 349 AARWQMIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVK 528
AARWQM VSDS P E E+ E+ER GG+M +V EK +++IN +VYSA TVK
Sbjct: 342 AARWQMAMVSDSPPLEEEFKQWLREVERNGGRMPSKQDVLEKKESIQKINTFVYSAATVK 401
Query: 529 QMLQEKKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKN 708
QMLQEKK AS RP N+AAEK++LR+EL A+S D + ERI+ +L+ELE S SK K+
Sbjct: 402 QMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDDVDMERIKKRLQELEA-SRDSKVKD 460
Query: 709 EKALMLAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYYASKVSNAN 888
KA+ LAEMNRKNR ENF+ ASE KR N +LKAGEAGYDPFSRRWTRS NYY SK
Sbjct: 461 AKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGEEV 520
Query: 889 ESVPEAEKQ--PDEAKVEE----------TEKDMKVAVEEGKLINTEAPPCIGSKVHALH 1032
+ +K P A EE TE ++ A GKL++T AP +G++ + LH
Sbjct: 521 TAEANGDKNGVPGGANGEEGATGEVGMAATEAALEAAAGAGKLVDTNAPLDLGTESNMLH 580
Query: 1033 NFELDLSPDLLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYKRRR 1212
+FELD+S + L ++GG QG A FMAR+Q++EA G +P NDG+RH+LTLTV DYKRRR
Sbjct: 581 DFELDISLNALKKFGGPQGVLAGFMARKQRIEATVGCQVPENDGRRHALTLTVGDYKRRR 640
Query: 1213 GLM 1221
GL+
Sbjct: 641 GLL 643
>ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
[Citrus sinensis] gi|568867309|ref|XP_006486981.1|
PREDICTED: RNA polymerase-associated protein RTF1 homolog
isoform X2 [Citrus sinensis]
Length = 643
Score = 408 bits (1049), Expect = e-111
Identities = 224/423 (52%), Positives = 280/423 (66%), Gaps = 16/423 (3%)
Frame = +1
Query: 1 EGEANSESH---EGSPR-GNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFE 168
+ E+ S SH EGS G SG +Y DI +ITI+RSKLAKWFMEPFFE
Sbjct: 224 QSESESRSHSDDEGSTGDGGMADSDDDGAPGSGRPTYDDIKEITIRRSKLAKWFMEPFFE 283
Query: 169 SIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESN 348
+I GCFVR+GIG YRLC V+NVDA T+P + Y E R T KYLN WG+ES+
Sbjct: 284 ELIVGCFVRVGIGRSKNGPIYRLCMVRNVDA--TEPDRSYKLENRTTCKYLNVTWGNESS 341
Query: 349 AARWQMIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVK 528
AARWQM VSDS P E E+ E+ER G+M +V EK +++IN +VYSA TVK
Sbjct: 342 AARWQMAMVSDSPPLEEEFKQWLREVERNSGRMPSKQDVLEKKDSIQKINTFVYSAATVK 401
Query: 529 QMLQEKKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKN 708
QMLQEKK AS RP N+AAEK++LR+EL A+S D+ + ERI+ +L+ELE S SK K+
Sbjct: 402 QMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVDMERIKKRLQELEA-SRDSKVKD 460
Query: 709 EKALMLAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYYASKVSNAN 888
KA+ LAEMNRKNR ENF+ ASE KR N +LKAGEAGYDPFSRRWTRS NYY SK
Sbjct: 461 AKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGEEV 520
Query: 889 ESVPEAEKQ--PDEAKVEE----------TEKDMKVAVEEGKLINTEAPPCIGSKVHALH 1032
+ +K P A EE TE ++ A GKL++T AP +G++ + LH
Sbjct: 521 TAEANGDKNGVPGGANGEEGATGEVGMAATEAALEAAAGAGKLVDTNAPLDLGTESNMLH 580
Query: 1033 NFELDLSPDLLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYKRRR 1212
+FELD+S + L ++GG QG A FMAR+Q++EA G +P NDG+RH+LTLTV DYKRRR
Sbjct: 581 DFELDISLNALKKFGGPQGVLAGFMARKQRIEATVGCQVPENDGRRHALTLTVGDYKRRR 640
Query: 1213 GLM 1221
GL+
Sbjct: 641 GLL 643
>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
gi|223541691|gb|EEF43239.1| RNA polymerase-associated
protein RTF1, putative [Ricinus communis]
Length = 660
Score = 401 bits (1031), Expect = e-109
Identities = 217/423 (51%), Positives = 277/423 (65%), Gaps = 16/423 (3%)
Frame = +1
Query: 1 EGEANSESHEGSPRGNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIE 180
E ++SE + G S ++ DI +ITI+RSKLAKWFMEP+FE +I
Sbjct: 241 ESRSHSEDEGSTGDGGMADSDDDGEPGSQGPTFDDIREITIRRSKLAKWFMEPWFEELIV 300
Query: 181 GCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARW 360
GCFVR+GIG YRLC V+NVDA+ DP + Y E + T+KYLN WG+ES+AARW
Sbjct: 301 GCFVRVGIGRSKSGPIYRLCLVRNVDAA--DPDRPYKLENKTTYKYLNVIWGNESSAARW 358
Query: 361 QMIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQ 540
QM +SDS+P E EY E+ER GG+M ++ EK + + N +VYSA TVKQMLQ
Sbjct: 359 QMAMISDSAPTEDEYKQWVREVERSGGRMPTKQDILEKKEAIRKSNTFVYSAATVKQMLQ 418
Query: 541 EKKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKNEKAL 720
EKK AS RP N+AAEK++LR+EL A+S +D E ERIR +++ELE S Q++ K+ KA+
Sbjct: 419 EKKSASSRPLNVAAEKDRLRRELEVAQSKQDDAEVERIRARIQELEA-SRQTQGKDAKAI 477
Query: 721 MLAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYYASKV-------- 876
LAEMNRKNRAENFR ASE K N +LKAGEAGYDPFSRRWTRS NYY SK
Sbjct: 478 RLAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPAGGDAAAA 537
Query: 877 --SNANESVPEAEKQPD------EAKVEETEKDMKVAVEEGKLINTEAPPCIGSKVHALH 1032
+ A+ +V A K EA + T ++ A + GKL++T AP G++ + LH
Sbjct: 538 TNNEASGTVAVANKTESAAGVSAEAGMAATAAALEAAADAGKLVDTAAPVDQGTESNTLH 597
Query: 1033 NFELDLSPDLLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYKRRR 1212
NFEL +S L ++GGAQGA A FMAR+Q++EA G + ND KRH LTLTV DYKRRR
Sbjct: 598 NFELPISLTALQKFGGAQGAQAGFMARKQRIEATIGCRVSENDEKRHVLTLTVSDYKRRR 657
Query: 1213 GLM 1221
GL+
Sbjct: 658 GLL 660
>ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutrema salsugineum]
gi|557088572|gb|ESQ29352.1| hypothetical protein
EUTSA_v10023338mg [Eutrema salsugineum]
Length = 644
Score = 400 bits (1028), Expect = e-109
Identities = 219/413 (53%), Positives = 269/413 (65%), Gaps = 8/413 (1%)
Frame = +1
Query: 7 EANSESHEGSP-RGNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEG 183
+++S+S S G+ G S ++ DI ITI+RSKLAKW MEPFFE +I G
Sbjct: 235 QSDSDSRSQSDDEGSNGGMVDSDDDRSDVPTFEDIKDITIRRSKLAKWLMEPFFEELIVG 294
Query: 184 CFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQ 363
CFVR+GIG YRLC VKNVDA TDP K Y E + T KYLNC WG ES+AARWQ
Sbjct: 295 CFVRVGIGRSKNGPIYRLCMVKNVDA--TDPDKTYKLENKTTHKYLNCIWGHESSAARWQ 352
Query: 364 MIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQE 543
M +SD P E EY E+ER G+M ++ EK +++IN++VYSAETVKQMLQE
Sbjct: 353 MAMISDGYPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIKRINSFVYSAETVKQMLQE 412
Query: 544 KKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKNEKALM 723
KK AS RP NIAAEK++LRKEL A+ D+ ERI+ K+++LE S + K ++KAL
Sbjct: 413 KKSASVRPMNIAAEKDRLRKELEVAQIKNDEAGVERIKAKIKQLEA-SREKKEVDKKALK 471
Query: 724 LAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYYASKVSNANESVPE 903
LAEMN+KNRAENF+ ASE K A+LKAGEAGYDPFSRRWTRS NYY K ++
Sbjct: 472 LAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKRKEGGDTEAT 531
Query: 904 AEKQPD-------EAKVEETEKDMKVAVEEGKLINTEAPPCIGSKVHALHNFELDLSPDL 1062
A + E VE TE ++ A + GKLI+T AP G++ + LHNFEL LS
Sbjct: 532 AAAAVETNGAAAGENGVEATEAALEAAADAGKLIDTRAPIGQGAEHNLLHNFELPLSLTA 591
Query: 1063 LNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYKRRRGLM 1221
L +YGG QG AFMAR+Q EA G + NDGKRH LTLTV DYKRRRGL+
Sbjct: 592 LQKYGGPQGVQKAFMARKQVTEATVGCRVAENDGKRHGLTLTVSDYKRRRGLL 644
>gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris]
Length = 654
Score = 398 bits (1023), Expect = e-108
Identities = 221/421 (52%), Positives = 280/421 (66%), Gaps = 16/421 (3%)
Frame = +1
Query: 7 EANSESH---EGSPRGNKRGKXXXXXXXSGAA--SYADICKITIKRSKLAKWFMEPFFES 171
E+ S SH EGS G +G+ S+ DI +ITI+RSKLAKWFMEPFFE
Sbjct: 237 ESESRSHSDDEGSTGDGGIGDSDDDRALTGSEGPSFQDIKEITIRRSKLAKWFMEPFFEE 296
Query: 172 IIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNA 351
+I GCFVR+GIG YRLC VKNVDAS +P ++Y E + T+KYLN WG+ES+A
Sbjct: 297 LIVGCFVRVGIGRSKTGPIYRLCMVKNVDAS--EPDRQYKLENKTTYKYLNVVWGNESSA 354
Query: 352 ARWQMIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQ 531
ARWQM VSDS+P E E+ +E++R GG+M +V EK +++ +VYSA TVKQ
Sbjct: 355 ARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPTKQDVLEKKQAIQKAITFVYSAATVKQ 414
Query: 532 MLQEKKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKNE 711
MLQEKK AS RP N+AAEK++LR+EL A+S D+ E +RI+ +L+ELE S +K K+
Sbjct: 415 MLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVDRIKARLQELEA-SRHAKQKDA 473
Query: 712 KALMLAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYY-ASKVSNAN 888
KAL LAEMNRKNR ENF+ ASE K N LKAGEAGYDPFSRRWTRS NYY K + N
Sbjct: 474 KALKLAEMNRKNRFENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYTGEKAAAGN 533
Query: 889 ESVPEAEKQPD----------EAKVEETEKDMKVAVEEGKLINTEAPPCIGSKVHALHNF 1038
SV P EA + T ++ A + GKL++T AP G++ + LHNF
Sbjct: 534 NSVNGIVAGPGTNSTGAPVTAEAGLVATAAALEAAADAGKLVDTSAPVDQGTESNMLHNF 593
Query: 1039 ELDLSPDLLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYKRRRGL 1218
EL +S LL +YGGAQGA A FMAR+Q++E+ G + NDG+RHSLTL+V DYKRRRGL
Sbjct: 594 ELPISLALLQKYGGAQGAQAGFMARKQRIESTVGFRVLENDGRRHSLTLSVSDYKRRRGL 653
Query: 1219 M 1221
+
Sbjct: 654 L 654
>ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp. lyrata]
gi|297333952|gb|EFH64370.1| At1g61040/T7P1_17
[Arabidopsis lyrata subsp. lyrata]
Length = 643
Score = 398 bits (1023), Expect = e-108
Identities = 218/414 (52%), Positives = 273/414 (65%), Gaps = 9/414 (2%)
Frame = +1
Query: 7 EANSESHEGSP-RGNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEG 183
+++S+S S G+ G S ++ D+ +ITI+RSKLAKW MEPFFE +I G
Sbjct: 233 QSDSDSRSQSDDEGSNAGMLDSDDDRSDVPTFEDVKEITIRRSKLAKWLMEPFFEELIVG 292
Query: 184 CFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQ 363
CFVR+GIG YRLC VKNVDA TDP K Y E + T KYLN WG+E++AARWQ
Sbjct: 293 CFVRVGIGRSKSGPIYRLCWVKNVDA--TDPDKTYKLENKTTHKYLNVVWGNETSAARWQ 350
Query: 364 MIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQE 543
M +SD P E EY E+ER G+M ++ EK +++IN++VYSAETVKQMLQE
Sbjct: 351 MAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRINSFVYSAETVKQMLQE 410
Query: 544 KKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKNEKALM 723
KK AS RP N+AAEK++LRKEL A+S D+ ERI+ K+++L+ S K ++KAL
Sbjct: 411 KKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKTKIKQLDA-SRNKKGVDKKALK 469
Query: 724 LAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYY----ASKVSNANE 891
LAEMN+KNRAENF+ ASE K +A+LKAGEAGYDPFSRRWTRS NYY K NE
Sbjct: 470 LAEMNKKNRAENFKNASEVKSISASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGEENE 529
Query: 892 SVPEAEKQPDEAK----VEETEKDMKVAVEEGKLINTEAPPCIGSKVHALHNFELDLSPD 1059
+ A + + A VE TE ++ A E GKLI+T AP G++ + LHNFEL LS
Sbjct: 530 TAVAAAVETNGADVGAGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLHNFELSLSLT 589
Query: 1060 LLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYKRRRGLM 1221
L +YGG QG AFMAR+Q EA G + NDGKRH LTLTV DYKRRRGL+
Sbjct: 590 ALQKYGGPQGVQKAFMARKQVTEATVGCRVAENDGKRHGLTLTVSDYKRRRGLL 643
>ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa]
gi|222848649|gb|EEE86196.1| plus-3 domain-containing
family protein [Populus trichocarpa]
Length = 662
Score = 397 bits (1020), Expect = e-108
Identities = 218/426 (51%), Positives = 277/426 (65%), Gaps = 21/426 (4%)
Frame = +1
Query: 7 EANSESH---EGSPR-GNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESI 174
E+ S SH EGS G S +Y DI +ITI+R+KLAKWFMEP+FE +
Sbjct: 240 ESGSRSHSEDEGSTGDGGMADSDEDVEPGSKGPTYEDIKEITIRRTKLAKWFMEPWFEEL 299
Query: 175 IEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAA 354
I GCFVR+GIG YRLC V+NVDA+ +P K Y E ++T+KYLN WG +++AA
Sbjct: 300 IIGCFVRVGIGRSKSGPVYRLCMVRNVDAA--EPDKPYKLENKSTYKYLNVTWGADTSAA 357
Query: 355 RWQMIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQM 534
RWQM VSDS P E EY E+E GG++ ++ EK + + N +VYSA TVKQM
Sbjct: 358 RWQMAMVSDSGPTEEEYKQWVREVECGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQM 417
Query: 535 LQEKKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKNEK 714
LQEKK AS RP N+AAEK++LR+EL A+S D+ E ERI ++ ELE S +K K+ K
Sbjct: 418 LQEKKSASSRPLNVAAEKDRLRRELEIAQSKHDEAEVERINARIEELEA-SRHAKVKDAK 476
Query: 715 ALMLAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYY---------- 864
A+ LAEMNRKNR ENFR ASE K N LKAGEAGYDPFSRRWTRS NYY
Sbjct: 477 AIRLAEMNRKNRVENFRNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYVSKPAEADDP 536
Query: 865 -ASKVSNANESVPEAEKQP------DEAKVEETEKDMKVAVEEGKLINTEAPPCIGSKVH 1023
A+K+S ANE+V A EA V TE ++ A + GKL++T AP G++ +
Sbjct: 537 VATKISEANETVAVAASNQVVAGVMSEAGVAATEAALEAAADAGKLVDTSAPVDQGTESN 596
Query: 1024 ALHNFELDLSPDLLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYK 1203
+H+FEL++S L +GG QGA A FMAR+Q++EA G +P NDG+RH+LTLTV DYK
Sbjct: 597 TMHSFELEISLIALQEFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVGDYK 656
Query: 1204 RRRGLM 1221
RRRGL+
Sbjct: 657 RRRGLL 662
>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
[Glycine max] gi|571466984|ref|XP_006583809.1| PREDICTED:
RNA polymerase-associated protein RTF1 homolog isoform X2
[Glycine max]
Length = 656
Score = 396 bits (1017), Expect = e-107
Identities = 214/394 (54%), Positives = 271/394 (68%), Gaps = 14/394 (3%)
Frame = +1
Query: 82 SGAASYADICKITIKRSKLAKWFMEPFFESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDA 261
S S+ D+ +ITI+RSKLAKWFMEPFFE +I GCFVR+GIG YRLC VKNVDA
Sbjct: 266 SEGPSFQDVKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDA 325
Query: 262 SSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQMIRVSDSSPDELEYVDLREEMERKGG 441
S +P ++Y E + T+KYLN WG+ES+AARWQM VSDS+P E E+ +E++R GG
Sbjct: 326 S--EPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWVKEVDRSGG 383
Query: 442 KMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEKKMASQRPSNIAAEKEKLRKELMHAE 621
+M +V EK +++ +VYSA TVKQMLQEKK AS RP N+AAEK++LR+EL A+
Sbjct: 384 RMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQ 443
Query: 622 SMEDQEEAERIRMKLRELEVISNQSKNKNEKALMLAEMNRKNRAENFRVASESKRANANL 801
S D+ E ERI+ +L ELE S Q+K K+ KAL LAEMNRKNR ENF+ ASE K N L
Sbjct: 444 SKYDEAEVERIKTRLLELEA-SRQAKQKDAKALKLAEMNRKNRFENFKNASEMKPVNTGL 502
Query: 802 KAGEAGYDPFSRRWTRSHNYYASKV--------SNANESVPEAEKQ------PDEAKVEE 939
KAGEAGYDPFSRRWTRS NYYA+K ++ N +V A EA +
Sbjct: 503 KAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNSVNGNVAGAGSNGTGAPVTAEAGMVA 562
Query: 940 TEKDMKVAVEEGKLINTEAPPCIGSKVHALHNFELDLSPDLLNRYGGAQGAPAAFMARRQ 1119
T ++ A GKL++T AP G++ + LHNFEL +S LL ++GGAQGA A FMAR+Q
Sbjct: 563 TAAALEAAAGAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQAGFMARKQ 622
Query: 1120 QLEARYGIPIPSNDGKRHSLTLTVDDYKRRRGLM 1221
++EA G + NDG+RH+LTLTV DYKRRRGL+
Sbjct: 623 KIEATVGFRVSENDGRRHALTLTVSDYKRRRGLL 656
>ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis thaliana]
gi|12323334|gb|AAG51642.1|AC018908_8 unknown protein;
78902-80833 [Arabidopsis thaliana]
gi|332195649|gb|AEE33770.1| Paf1C-like transcription
factor [Arabidopsis thaliana]
Length = 643
Score = 395 bits (1015), Expect = e-107
Identities = 216/414 (52%), Positives = 271/414 (65%), Gaps = 9/414 (2%)
Frame = +1
Query: 7 EANSESHEGSP-RGNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEG 183
+++S+S S G+ G S ++ D+ ++TI+RSKLAKW MEPFFE +I G
Sbjct: 233 QSDSDSRSQSDDEGSNGGMLDSDDDRSDVPTFEDVKEVTIRRSKLAKWLMEPFFEELIVG 292
Query: 184 CFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQ 363
CFVR+GIG YRLC VKNVDA TDP K Y E + T KYLN WG+E++AARWQ
Sbjct: 293 CFVRVGIGRSKSGPIYRLCWVKNVDA--TDPDKTYKLENKTTHKYLNVVWGNETSAARWQ 350
Query: 364 MIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQE 543
M +SD P E EY E+ER G+M ++ EK +++ N++VYSAETVKQMLQE
Sbjct: 351 MAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQE 410
Query: 544 KKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKNEKALM 723
KK AS RP N+AAEK++LRKEL A+S D+ ERI+ K+++L+ S K ++KAL
Sbjct: 411 KKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDA-SRNKKGVDKKALK 469
Query: 724 LAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYY----ASKVSNANE 891
LAEMN+KNRAENF+ ASE K A+LKAGEAGYDPFSRRWTRS NYY K NE
Sbjct: 470 LAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGEENE 529
Query: 892 SVPEAEKQPDEAK----VEETEKDMKVAVEEGKLINTEAPPCIGSKVHALHNFELDLSPD 1059
+ A + + A VE TE ++ A E GKLI+T AP G++ + LHNFEL LS
Sbjct: 530 AAVAAAVETNGADAGAGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLHNFELSLSLT 589
Query: 1060 LLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYKRRRGLM 1221
L +YGG QG AFMAR+Q EA G + NDGKRH LTLTV DYKRRRGL+
Sbjct: 590 ALQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLTLTVSDYKRRRGLL 643
>gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana]
Length = 643
Score = 395 bits (1015), Expect = e-107
Identities = 216/414 (52%), Positives = 271/414 (65%), Gaps = 9/414 (2%)
Frame = +1
Query: 7 EANSESHEGSP-RGNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEG 183
+++S+S S G+ G S ++ D+ ++TI+RSKLAKW MEPFFE +I G
Sbjct: 233 QSDSDSRSQSDDEGSNGGMLDSDDDRSDVPTFEDVKEVTIRRSKLAKWLMEPFFEELIVG 292
Query: 184 CFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQ 363
CFVR+GIG YRLC VKNVDA TDP K Y E + T KYLN WG+E++AARWQ
Sbjct: 293 CFVRVGIGRSKSGPIYRLCWVKNVDA--TDPDKTYKLENKTTHKYLNVVWGNETSAARWQ 350
Query: 364 MIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQE 543
M +SD P E EY E+ER G+M ++ EK +++ N++VYSAETVKQMLQE
Sbjct: 351 MAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQE 410
Query: 544 KKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKNEKALM 723
KK AS RP N+AAEK++LRKEL A+S D+ ERI+ K+++L+ S K ++KAL
Sbjct: 411 KKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDA-SRNKKGVDKKALK 469
Query: 724 LAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYY----ASKVSNANE 891
LAEMN+KNRAENF+ ASE K A+LKAGEAGYDPFSRRWTRS NYY K NE
Sbjct: 470 LAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGEENE 529
Query: 892 SVPEAEKQPDEAK----VEETEKDMKVAVEEGKLINTEAPPCIGSKVHALHNFELDLSPD 1059
+ A + + A VE TE ++ A E GKLI+T AP G++ + LHNFEL LS
Sbjct: 530 AAVAAAVETNGADAGAGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLHNFELSLSLT 589
Query: 1060 LLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYKRRRGLM 1221
L +YGG QG AFMAR+Q EA G + NDGKRH LTLTV DYKRRRGL+
Sbjct: 590 ALQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLTLTVSDYKRRRGLL 643
>gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao]
gi|508781058|gb|EOY28314.1| PAF1 complex component
isoform 1 [Theobroma cacao]
Length = 660
Score = 394 bits (1013), Expect = e-107
Identities = 207/390 (53%), Positives = 270/390 (69%), Gaps = 14/390 (3%)
Frame = +1
Query: 94 SYADICKITIKRSKLAKWFMEPFFESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTD 273
++ DI +ITI+RSKLAKWFMEPFFE +I GC+VR+GIG YRLC V+NVDA T+
Sbjct: 274 TFDDIKEITIRRSKLAKWFMEPFFEELIVGCYVRVGIGRSKSGPIYRLCMVRNVDA--TE 331
Query: 274 PKKKYTFEKRATFKYLNCFWGDESNAARWQMIRVSDSSPDELEYVDLREEMERKGGKMIR 453
P++ Y E + T+KYLN WG+ES+AARWQM +SDS P E E+ L E+ER GG+M
Sbjct: 332 PERTYKLENKTTYKYLNVVWGNESSAARWQMAMISDSPPQEEEFRQLIRELERSGGRMPS 391
Query: 454 TDEVEEKLTQLEQINNYVYSAETVKQMLQEKKMASQRPSNIAAEKEKLRKELMHAESMED 633
+V EK L++ +VYSA TVKQMLQEKK S RP NIAAEK++LR++L A+S D
Sbjct: 392 KQDVLEKKEALQKAKTFVYSAATVKQMLQEKKSTSSRPLNIAAEKDRLRRDLEIAQSKHD 451
Query: 634 QEEAERIRMKLRELEVISNQSKNKNEKALMLAEMNRKNRAENFRVASESKRANANLKAGE 813
+ E ERI+M+L++LE S Q++ K+ KA+ LAEMNRKNRAENF+ ASE K N LKAGE
Sbjct: 452 EAEVERIKMRLQQLEA-SRQAQEKDAKAVRLAEMNRKNRAENFKNASELKPVNTGLKAGE 510
Query: 814 AGYDPFSRRWTRSHNYYASK--------VSNANESVPEAEKQPDEAKV------EETEKD 951
AGYDPFSRRWTRS NYY +K V+N + A ++A+ T
Sbjct: 511 AGYDPFSRRWTRSRNYYVAKPPGADAAAVANGDRIGVIASGNGNDARAAAEAGRAATVAA 570
Query: 952 MKVAVEEGKLINTEAPPCIGSKVHALHNFELDLSPDLLNRYGGAQGAPAAFMARRQQLEA 1131
++ A GKL++T AP G++ + LH+FE+ +S + L R+GG QGA A FMAR+Q++EA
Sbjct: 571 LQEAAGAGKLVDTSAPVDEGTESNMLHDFEIPISLNALQRFGGPQGAVAGFMARKQRIEA 630
Query: 1132 RYGIPIPSNDGKRHSLTLTVDDYKRRRGLM 1221
G +P NDG+RH+LTLTV DYKRRRGL+
Sbjct: 631 TVGCQVPENDGRRHALTLTVSDYKRRRGLL 660
>ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
[Cicer arietinum] gi|502142571|ref|XP_004505023.1|
PREDICTED: RNA polymerase-associated protein RTF1 homolog
isoform X2 [Cicer arietinum]
Length = 658
Score = 392 bits (1008), Expect = e-106
Identities = 212/394 (53%), Positives = 271/394 (68%), Gaps = 14/394 (3%)
Frame = +1
Query: 82 SGAASYADICKITIKRSKLAKWFMEPFFESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDA 261
S S+ DI +ITI+RSKLAKWFMEPFFE +I GCFVR+GIG YRLC VKNVD+
Sbjct: 268 SEGPSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDS 327
Query: 262 SSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQMIRVSDSSPDELEYVDLREEMERKGG 441
S DP ++Y E R T KYLN WG+ES+AARWQM VSDS P E E+ +E+ER GG
Sbjct: 328 S--DPDRQYKLENRTTHKYLNVVWGNESSAARWQMAMVSDSFPLEEEFKQWVKEVERSGG 385
Query: 442 KMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEKKMASQRPSNIAAEKEKLRKELMHAE 621
+M +V EK +++I +VYSA+TVKQMLQEKK +S RP N+AAEK++LR+E+ A+
Sbjct: 386 RMPTKQDVLEKKQAIQKIITFVYSADTVKQMLQEKKSSSSRPLNVAAEKDRLRREMEIAQ 445
Query: 622 SMEDQEEAERIRMKLRELEVISNQSKNKNEKALMLAEMNRKNRAENFRVASESKRANANL 801
S D+ E ERI+ +++ELE S +K K+ KAL LAEMNRKNR ENF+ ASE + N L
Sbjct: 446 SKNDEAEVERIKTRVQELEA-SRHAKVKDAKALKLAEMNRKNRFENFKNASELRPVNIGL 504
Query: 802 KAGEAGYDPFSRRWTRSHNYY--------ASKVSNANESVPEAEKQ------PDEAKVEE 939
KAGEAGYDPFSRRWTRS NYY A++ + N V +A E+ V
Sbjct: 505 KAGEAGYDPFSRRWTRSRNYYVAKPGEKAAARKNTTNVLVADAGSNITGVPVTAESGVVA 564
Query: 940 TEKDMKVAVEEGKLINTEAPPCIGSKVHALHNFELDLSPDLLNRYGGAQGAPAAFMARRQ 1119
T ++ A + GKL++T AP G++ + LHNFEL +S LL++YGGAQGA A FMAR+Q
Sbjct: 565 TAAALEAAADAGKLVDTSAPVDQGTESNFLHNFELPISLALLHKYGGAQGAQAGFMARKQ 624
Query: 1120 QLEARYGIPIPSNDGKRHSLTLTVDDYKRRRGLM 1221
++EA G + NDG+RH LTL+V DYKRRRGL+
Sbjct: 625 RMEATVGFRVSENDGRRHVLTLSVGDYKRRRGLL 658
>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
max]
Length = 656
Score = 392 bits (1008), Expect = e-106
Identities = 213/395 (53%), Positives = 269/395 (68%), Gaps = 15/395 (3%)
Frame = +1
Query: 82 SGAASYADICKITIKRSKLAKWFMEPFFESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDA 261
S S+ DI +ITI+RSKLAKWFMEPFFE +I GCFVR+GIG YRLC VKNVDA
Sbjct: 266 SEGPSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDA 325
Query: 262 SSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQMIRVSDSSPDELEYVDLREEMERKGG 441
S +P ++Y E + T+KYLN WG+ES+AARWQM VSDS+P E E+ +E++ GG
Sbjct: 326 S--EPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPMEEEFKQWVKEVDCSGG 383
Query: 442 KMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEKKMASQRPSNIAAEKEKLRKELMHAE 621
+M +V EK +++ +VYSA TVKQMLQEKK AS RP N+AAEK++LR+EL A+
Sbjct: 384 RMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQ 443
Query: 622 SMEDQEEAERIRMKLRELEVISNQSKNKNEKALMLAEMNRKNRAENFRVASESKRANANL 801
S D+ E ERI+ +L+ELE S Q+K K+ KAL LAEMNRKNR ENF+ ASE K N L
Sbjct: 444 SKHDEAEVERIKTRLQELEA-SRQAKQKDAKALKLAEMNRKNRFENFKNASELKPVNIGL 502
Query: 802 KAGEAGYDPFSRRWTRSHNYYASK---------------VSNANESVPEAEKQPDEAKVE 936
KAGEAGYDPFSRRWTRS NYYA+K V+ A + A EA +
Sbjct: 503 KAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNIVNGNVAGAGSNATGAPVTA-EAGMV 561
Query: 937 ETEKDMKVAVEEGKLINTEAPPCIGSKVHALHNFELDLSPDLLNRYGGAQGAPAAFMARR 1116
T ++ A GKL++T AP G++ + LHNFEL +S LL +YGGA GA A FMAR+
Sbjct: 562 ATAAALEAAAGAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKYGGAPGAQAGFMARK 621
Query: 1117 QQLEARYGIPIPSNDGKRHSLTLTVDDYKRRRGLM 1221
Q++E+ G + NDG+RH+LTLTV DYKRRRGL+
Sbjct: 622 QRIESTVGFRVSENDGRRHALTLTVSDYKRRRGLL 656
>ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Capsella rubella]
gi|482569554|gb|EOA33742.1| hypothetical protein
CARUB_v10019938mg [Capsella rubella]
Length = 644
Score = 391 bits (1005), Expect = e-106
Identities = 213/413 (51%), Positives = 268/413 (64%), Gaps = 8/413 (1%)
Frame = +1
Query: 7 EANSESHEGSPRGNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEGC 186
+++S+S S S ++ DI +ITI+RSKLAKW MEPFFE +I GC
Sbjct: 235 QSDSDSRSQSDDEGSNAGLDSDDDRSDMPTFEDIKEITIRRSKLAKWLMEPFFEELIVGC 294
Query: 187 FVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQM 366
FVR+GIG YRLC V+NVDA TDP K Y E + T KYLN WG+E++AARWQM
Sbjct: 295 FVRVGIGRSKSGPIYRLCMVRNVDA--TDPDKTYKLENKTTHKYLNVIWGNETSAARWQM 352
Query: 367 IRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEK 546
+SD P E EY E+ER G+M ++ EK +++IN+++YSAETVKQMLQEK
Sbjct: 353 AMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIKRINSFIYSAETVKQMLQEK 412
Query: 547 KMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKNEKALML 726
K AS RP N+AAEK++LRKEL A+S D+ ERI+ K+++L+ S K ++KAL L
Sbjct: 413 KSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKTKIKQLDA-SRNKKGVDKKALKL 471
Query: 727 AEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYY----ASKVSNANES 894
AEMN+KNRAENF+ ASE K A+LK GEAGYDPFSRRWTRS NYY K NE+
Sbjct: 472 AEMNKKNRAENFKNASEVKSITASLKVGEAGYDPFSRRWTRSSNYYNGKNKGKEGAENEA 531
Query: 895 VPEAEKQPD----EAKVEETEKDMKVAVEEGKLINTEAPPCIGSKVHALHNFELDLSPDL 1062
A + + A VE TE ++ A E GKLI+T AP G++ + LHNFEL +S
Sbjct: 532 AVAAAVETNGVDAGAGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLHNFELSVSLAA 591
Query: 1063 LNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYKRRRGLM 1221
L +YGG QG AFMAR+Q EA G + NDGKRH LTLTV DYKRRRGL+
Sbjct: 592 LQKYGGPQGVQKAFMARKQVTEATVGCRVAENDGKRHGLTLTVSDYKRRRGLL 644
>ref|XP_002316628.2| plus-3 domain-containing family protein [Populus trichocarpa]
gi|550327599|gb|EEE97240.2| plus-3 domain-containing
family protein [Populus trichocarpa]
Length = 664
Score = 390 bits (1003), Expect = e-106
Identities = 214/428 (50%), Positives = 275/428 (64%), Gaps = 21/428 (4%)
Frame = +1
Query: 1 EGEANSESH---EGSPR-GNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFE 168
E E+ S SH EGS G S +Y DI +ITI+R+KLAKWFMEP+FE
Sbjct: 240 ESESGSRSHSEDEGSTGDGGMADSDEDGDPGSRGPTYEDIKEITIRRTKLAKWFMEPWFE 299
Query: 169 SIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESN 348
+I GCFVR+GIG YRLC V+NVDA+ +P K Y E ++T+KYLN WG +S+
Sbjct: 300 ELIIGCFVRVGIGRSKTGPVYRLCMVRNVDAA--EPDKPYKLENKSTYKYLNVTWGADSS 357
Query: 349 AARWQMIRVSDSSPDELEYVDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVK 528
AARWQM VSDS+P E EY E ER GG++ ++ EK + + N +VYSA TVK
Sbjct: 358 AARWQMAMVSDSAPTEEEYKQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYSAATVK 417
Query: 529 QMLQEKKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKN 708
QMLQEKK AS RP N+AAEK++LR+EL A+S D+ E ERI ++ ELE S Q+K K+
Sbjct: 418 QMLQEKKSASSRPLNVAAEKDRLRRELEIAQSRHDEAEVERIEARILELEA-SRQAKVKD 476
Query: 709 EKALMLAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYYASKVSNAN 888
KAL LAEMNRKNR ENFR ASE K N LKAGEAGYDPFSRRWTRS NYY S + +
Sbjct: 477 AKALRLAEMNRKNRVENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNPAGGD 536
Query: 889 ESVPEAEKQPD-----------------EAKVEETEKDMKVAVEEGKLINTEAPPCIGSK 1017
++V + + + E+ V T + A + GKL++T AP G++
Sbjct: 537 DAVAASNSEANDTAAVADSDHVVAGAMSESGVAATAAALDAAADAGKLVDTSAPVDQGTE 596
Query: 1018 VHALHNFELDLSPDLLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDD 1197
+ +HNFEL++S L ++ G QGA A FMAR+Q++EA G + NDG+RH+LTLTV D
Sbjct: 597 SNTMHNFELEISLIALQKFRGPQGAHAGFMARKQRIEANVGCQVRENDGRRHALTLTVGD 656
Query: 1198 YKRRRGLM 1221
YKRRRGL+
Sbjct: 657 YKRRRGLL 664
>gb|EXB82802.1| RNA polymerase-associated protein RTF1-like protein [Morus notabilis]
Length = 658
Score = 388 bits (996), Expect = e-105
Identities = 203/396 (51%), Positives = 267/396 (67%), Gaps = 16/396 (4%)
Frame = +1
Query: 82 SGAASYADICKITIKRSKLAKWFMEPFFESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDA 261
S ++ DI ++T++RSKLAKW MEPFFE +I GCFVR+GIG YRLC V+NVDA
Sbjct: 266 SEGLTFDDIKEVTVRRSKLAKWLMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVRNVDA 325
Query: 262 SSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQMIRVSDSSPDELEYVDLREEMERKGG 441
S +P ++Y + + T KYLN WG+E++AARWQM VSDS P+E E+ E+ER GG
Sbjct: 326 S--EPDRQYKLDNKITHKYLNVVWGNENSAARWQMAMVSDSVPNEEEFKQWVREVERSGG 383
Query: 442 KMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEKKMASQRPSNIAAEKEKLRKELMHAE 621
+M ++ +K +++IN +VYSA TVKQMLQEKK AS RP NIA EK++LR+EL A+
Sbjct: 384 RMPTKHDILDKKESIKKINTFVYSAATVKQMLQEKKSASARPLNIALEKDRLRRELEVAQ 443
Query: 622 SMEDQEEAERIRMKLRELEVISNQSKNKNEKALMLAEMNRKNRAENFRVASESKRANANL 801
S D+ E +RI+ +L+ELE S ++K + KA+ LAEMNRKNR ENF+ ASE K N L
Sbjct: 444 SKNDEVEVDRIKTRLQELEA-SRKAKQTDAKAIRLAEMNRKNRVENFKNASELKPVNTGL 502
Query: 802 KAGEAGYDPFSRRWTRSHNYYASKVSNANE----------SVPEAEKQ------PDEAKV 933
KAGEAGYDPFSRRWTRS NYY K E + +AE EA +
Sbjct: 503 KAGEAGYDPFSRRWTRSRNYYVGKPGEVKEDSGANAGNNGASTDAENNGRHGIVAAEAGI 562
Query: 934 EETEKDMKVAVEEGKLINTEAPPCIGSKVHALHNFELDLSPDLLNRYGGAQGAPAAFMAR 1113
TE ++ A + GKL++T AP G+ + LHNFEL +S +L ++GG QGA A FMAR
Sbjct: 563 AATEAALEAAADAGKLVDTNAPVDQGTVSNMLHNFELPISLSVLQKFGGPQGAQAGFMAR 622
Query: 1114 RQQLEARYGIPIPSNDGKRHSLTLTVDDYKRRRGLM 1221
+Q++EA G +P NDG+RH+LTL+V DYKRRRGL+
Sbjct: 623 KQRIEATVGCRVPENDGRRHALTLSVGDYKRRRGLL 658
>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
polymerase-associated protein RTF1 homolog [Cucumis
sativus]
Length = 660
Score = 385 bits (989), Expect = e-104
Identities = 203/396 (51%), Positives = 270/396 (68%), Gaps = 16/396 (4%)
Frame = +1
Query: 82 SGAASYADICKITIKRSKLAKWFMEPFFESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDA 261
S ++ DI ++TI+RSKLAKW MEPFFE +I GCFVR+GIG YRLC V+NVDA
Sbjct: 269 SDGPTFEDIKEVTIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDA 328
Query: 262 SSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQMIRVSDSSPDELEYVDLREEMERKGG 441
T+P ++Y E + T KYLN WG+E++AARWQM VSDS+P E EY +E+ER GG
Sbjct: 329 --TEPDRQYKLENKITHKYLNVIWGNEASAARWQMAMVSDSAPLEDEYKQWVKEVERTGG 386
Query: 442 KMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEKKMASQRPSNIAAEKEKLRKELMHAE 621
+M+ ++ EK ++++NN+VYSA TVKQMLQ+KK AS RP NIAAEK++LR+E+ A
Sbjct: 387 RMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQDKKSASARPLNIAAEKDRLRREMDVAV 446
Query: 622 SMEDQEEAERIRMKLRELEVISNQSKNKNEKALMLAEMNRKNRAENFRVASESKRANANL 801
S D+ E ERI+ +L++LE S + + K+ KA+ LAEMNRKNR ENF+ ASE R +L
Sbjct: 447 SKNDEAEVERIKTRLQQLEA-SRRLQMKDAKAIRLAEMNRKNRVENFKNASE-LRPLKDL 504
Query: 802 KAGEAGYDPFSRRWTRSHNYYASKVSNANESVPEAEKQPD----------------EAKV 933
KAGEAGYDPFSRRWTRS NYY S AN + A + +A +
Sbjct: 505 KAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAGNSDNVTPALENTRTEAGGTSDAGM 564
Query: 934 EETEKDMKVAVEEGKLINTEAPPCIGSKVHALHNFELDLSPDLLNRYGGAQGAPAAFMAR 1113
T ++ A GKL++T AP G++ ++LHNFEL +S +L ++GGA GA A F+AR
Sbjct: 565 AATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFELPISLAMLQKFGGALGAQAGFLAR 624
Query: 1114 RQQLEARYGIPIPSNDGKRHSLTLTVDDYKRRRGLM 1221
+Q++EA G +P NDG+RH+LTLTV DYKRRRGL+
Sbjct: 625 KQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660
>ref|XP_004493842.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
[Cicer arietinum] gi|502110282|ref|XP_004493843.1|
PREDICTED: RNA polymerase-associated protein RTF1 homolog
isoform X2 [Cicer arietinum]
Length = 653
Score = 384 bits (987), Expect = e-104
Identities = 204/390 (52%), Positives = 270/390 (69%), Gaps = 14/390 (3%)
Frame = +1
Query: 94 SYADICKITIKRSKLAKWFMEPFFESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTD 273
S+ DI +ITI+RSKLAKWFMEPFFE +I GCFVR+GIG YRLC VKNVDAS D
Sbjct: 267 SFEDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDAS--D 324
Query: 274 PKKKYTFEKRATFKYLNCFWGDESNAARWQMIRVSDSSPDELEYVDLREEMERKGGKMIR 453
P ++Y + + T+KYLN WG+E++AARWQM VSDS P E E+ +E+ER GG+M+
Sbjct: 325 PDRQYKLDNKTTYKYLNVVWGNETSAARWQMAMVSDSPPLEEEFKQWVKEVERSGGRMLM 384
Query: 454 TDEVEEKLTQLEQINNYVYSAETVKQMLQEKKMASQRPSNIAAEKEKLRKELMHAESMED 633
+V EK +++IN++VYSA TVKQM++EKK S+RP N+AAEK++L+++L AES +D
Sbjct: 385 KLDVMEKNQAIQKINSFVYSAATVKQMIEEKKSNSRRPLNVAAEKDRLKRQLEIAESKKD 444
Query: 634 QEEAERIRMKLRELEVISNQSKNKNEKALMLAEMNRKNRAENFRVASESKRANANLKAGE 813
E E+I+ +L+ELE S +++ K+ KAL L+EMNRKNR ENF+ ASE K N LKAGE
Sbjct: 445 AAEVEKIKTRLQELEA-SRKTQAKDAKALRLSEMNRKNRFENFKNASELKPVNKGLKAGE 503
Query: 814 AGYDPFSRRWTRSHNYY----ASKVSNANESVPEA----------EKQPDEAKVEETEKD 951
AGYDPFSRRWTRS NYY A + + N S A EA V T +
Sbjct: 504 AGYDPFSRRWTRSRNYYNAKQAEEAAAGNNSSGGAVGDRGSNGVGATVAGEAGVVATAEA 563
Query: 952 MKVAVEEGKLINTEAPPCIGSKVHALHNFELDLSPDLLNRYGGAQGAPAAFMARRQQLEA 1131
++ A + GKL++T AP G++ + LHNFEL +S +L ++GGAQG A F+A++Q++E
Sbjct: 564 LEAAADAGKLVDTRAPVDQGTESNFLHNFELPISLTILQKFGGAQGVHAGFIAKKQRIEE 623
Query: 1132 RYGIPIPSNDGKRHSLTLTVDDYKRRRGLM 1221
G +P NDGK H LTLTV DYKRRRGL+
Sbjct: 624 IVGFRVPENDGKSHMLTLTVSDYKRRRGLL 653
>ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like protein [Medicago
truncatula] gi|355500443|gb|AES81646.1| RNA
polymerase-associated protein RTF1-like protein [Medicago
truncatula]
Length = 624
Score = 382 bits (982), Expect = e-103
Identities = 202/384 (52%), Positives = 264/384 (68%), Gaps = 8/384 (2%)
Frame = +1
Query: 94 SYADICKITIKRSKLAKWFMEPFFESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTD 273
S+ DI ITI RSKL KWFMEPFFE +I GCFVR+GIG YRLC VKNVDAS D
Sbjct: 244 SFEDIQDITIPRSKLTKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDAS--D 301
Query: 274 PKKKYTFEKRATFKYLNCFWGDESNAARWQMIRVSDSSPDELEYVDLREEMERKGGKMIR 453
P + Y + + T+KYLN WG+E++AARWQM VSDS P E E+ +E+ER GG+M++
Sbjct: 302 PDRLYKLDNKTTYKYLNVVWGNETSAARWQMAMVSDSPPLEEEFKQWVKEVERSGGRMLK 361
Query: 454 TDEVEEKLTQLEQINNYVYSAETVKQMLQEKKMASQRPSNIAAEKEKLRKELMHAESMED 633
+V EK + +INN+VYSA TVKQML+EKK S+RP N+AAEK++L++EL AES D
Sbjct: 362 RLDVVEKKQAMLKINNFVYSAATVKQMLEEKKSISRRPLNVAAEKDRLKRELEIAESKND 421
Query: 634 QEEAERIRMKLRELEVISNQSKNKNEKALMLAEMNRKNRAENFRVASESKRANANLKAGE 813
E+I+ KL+ELE S +S+ K+ KAL L+EMNRKNR ENF+ AS+ K N LKAGE
Sbjct: 422 AAGVEKIQTKLQELEE-SRKSREKDAKALRLSEMNRKNRVENFKNASDLKPVNKALKAGE 480
Query: 814 AGYDPFSRRWTRSHNYYASKV--------SNANESVPEAEKQPDEAKVEETEKDMKVAVE 969
AGYDPFSRRWTRS NYY SK + + +V + A + T + ++ A
Sbjct: 481 AGYDPFSRRWTRSRNYYNSKPAEEATAGNNTSGGAVGDGGSNGIGAGMAATTEALEAAAG 540
Query: 970 EGKLINTEAPPCIGSKVHALHNFELDLSPDLLNRYGGAQGAPAAFMARRQQLEARYGIPI 1149
GKL++T AP G++ + LH+FEL +S +L ++GGA+G A FMA++Q++E G +
Sbjct: 541 AGKLVDTRAPVDEGTESNVLHDFELPISLAMLQKFGGAKGVQAGFMAKKQRIEEVVGFRV 600
Query: 1150 PSNDGKRHSLTLTVDDYKRRRGLM 1221
P NDG+RH LTLTV DYKRRRGL+
Sbjct: 601 PENDGRRHQLTLTVSDYKRRRGLL 624