BLASTX nr result

ID: Ephedra26_contig00012024 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00012024
         (547 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK23782.1| unknown [Picea sitchensis] gi|224286053|gb|ACN407...    68   2e-09
ref|XP_004296727.1| PREDICTED: mediator of RNA polymerase II tra...    56   6e-06

>gb|ABK23782.1| unknown [Picea sitchensis] gi|224286053|gb|ACN40738.1| unknown
           [Picea sitchensis]
          Length = 173

 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 31/48 (64%), Positives = 38/48 (79%)
 Frame = -1

Query: 547 ELFDELEKDYPEETETYREMRAASYSEAIKQMQAAGSLPNGDTKTKTQ 404
           +L +ELE++YPEE E YRE+RAAS +E  KQMQA G LPNGD K KT+
Sbjct: 125 QLLEELEQEYPEEVEVYRELRAASAAELKKQMQAQGGLPNGDAKIKTE 172


>ref|XP_004296727.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           10b-like isoform 2 [Fragaria vesca subsp. vesca]
          Length = 196

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 26/47 (55%), Positives = 34/47 (72%)
 Frame = -1

Query: 544 LFDELEKDYPEETETYREMRAASYSEAIKQMQAAGSLPNGDTKTKTQ 404
           L DELE+ +P+E E+YRE+RAAS +E  +  QA  SLPNGD K K +
Sbjct: 149 LLDELEQAFPDEVESYREIRAASAAETKRLAQAQSSLPNGDVKVKPE 195


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