BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00011896
         (480 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFD96492.1| sex-determinating region Y protein, partial [Mus ...    55   1e-05

>gb|AFD96492.1| sex-determinating region Y protein, partial [Mus musculus]
          Length = 318

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 39/147 (26%), Positives = 53/147 (36%), Gaps = 8/147 (5%)
 Frame = -3

Query: 424 HKHQQPEQSPVPRR*NPDFSAQTRAHQRSTSSSKAVQHSTPLDHHQEHQIHCSFSHHQTF 245
           H HQQ +Q    ++            Q+        Q     DHH  HQ      HHQ  
Sbjct: 172 HHHQQQQQQQQQQQQQQQQQFHDHHQQKQQFHDHHQQQQQFHDHHHHHQQQQFHDHHQQQ 231

Query: 244 QSLHTCESRVQKNQPF--------QYQISQDPLQNQIFQSHLEIYQAFLQYP*QNQQLFQ 89
           Q  H  + + Q+ Q F        Q+       Q Q F  H +  Q F  +  Q QQ   
Sbjct: 232 QQFHDHQQQQQQQQQFHDHHQQKQQFHDHHHHQQQQQFHDHQQQQQQFHDHQQQQQQFHD 291

Query: 88  HPFQNHHFLNRFQSRSSPNFSQYPQRQ 8
           H  Q H F +  Q +    F  +PQ+Q
Sbjct: 292 HQQQQHQFHDHPQQKQ--QFHDHPQQQ 316