BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00011349
         (753 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN79644.1| hypothetical protein VITISV_033788 [Vitis vinifera]    65   6e-32
emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]    67   1e-31
emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]    69   5e-31
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi...    69   1e-29
emb|CAN71037.1| hypothetical protein VITISV_011061 [Vitis vinifera]    67   1e-27
emb|CAN80930.1| hypothetical protein VITISV_005279 [Vitis vinifera]    69   2e-27
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...    68   4e-27
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...    68   9e-27
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...    68   2e-26
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]          66   2e-26
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...    66   2e-26
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...    75   5e-26
emb|CAN72675.1| hypothetical protein VITISV_020405 [Vitis vinifera]    61   7e-26
gb|EOY11267.1| Uncharacterized protein TCM_026511 [Theobroma cacao]    61   1e-25
gb|EOY19734.1| Copia-like retrotransposable element, putative [T...    64   4e-25
gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsi...    63   2e-24
ref|XP_006590177.1| PREDICTED: uncharacterized protein LOC102669...    69   2e-24
gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157...    62   1e-23
ref|XP_003376336.1| retrovirus-related Pol polyprotein from tran...    63   2e-23
gb|AAT38797.2| Polyprotein, putative [Solanum demissum]                60   3e-23

>emb|CAN79644.1| hypothetical protein VITISV_033788 [Vitis vinifera]
          Length = 1181

 Score = 65.1 bits (157), Expect(4) = 6e-32
 Identities = 31/77 (40%), Positives = 48/77 (62%)
 Frame = -3

Query: 301 VAERRNRTLVEVIRCLLNDSSLSKIWWGEALSIANYIINYWPNKSINLKIPKEI*RNEKL 122
           V+ER+N T++E+ RC+L +  L K+ W EA++ + Y++N  P KS+  K P E     K 
Sbjct: 574 VSERKNITVMEMARCMLFEKKLPKLLWAEAINTSVYLLNRLPTKSVQSKTPIEAWSGVKP 633

Query: 121 VVSYLKVFGRK*FYHIP 71
            V +LKVFG   + H+P
Sbjct: 634 SVKHLKVFGSFCYLHVP 650



 Score = 64.7 bits (156), Expect(4) = 6e-32
 Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
 Frame = -2

Query: 722 LIECLKKITTPNSTYKSHVLGK*HKLPFSKK-EKRAKRCLELMHTDIFGPLLI*TNHDYY 546
           ++E + +I+    TY+S  LGK  + PF +   KRA   LEL+H+DI GP+ I +  +  
Sbjct: 432 MVEDMPEISVNAQTYESCELGKQQQQPFPQNMSKRATHKLELIHSDICGPMSIASLSNNV 491

Query: 545 YFATFIDDYLRFFWVYLLKQKIESL 471
           YFA FIDD  R  WVY LK K + L
Sbjct: 492 YFALFIDDLNRMTWVYFLKTKSQVL 516



 Score = 43.5 bits (101), Expect(4) = 6e-32
 Identities = 23/66 (34%), Positives = 34/66 (51%)
 Frame = -1

Query: 498 FT*TKNRVLNKFVGYREKVKIEKGEKICKLMRDGGMEYXXXXXXXXXXXXSIQR*LTIPY 319
           F  TK++VL+ F  +++ V+ + G+ +  L  D G EY             I   LT PY
Sbjct: 508 FLKTKSQVLSVFKSFKKMVETQSGQNVKVLRTDNGGEYISKEFNVFCQEAGIVHQLTAPY 567

Query: 318 NPQQNG 301
           +PQQNG
Sbjct: 568 SPQQNG 573



 Score = 31.6 bits (70), Expect(4) = 6e-32
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = -2

Query: 71  KRKKLDNKAKLGIFIGYLLEPK 6
           KR KLD +A+ G+F+GY++E K
Sbjct: 653 KRGKLDERAEKGVFVGYVVESK 674


>emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]
          Length = 1269

 Score = 67.4 bits (163), Expect(4) = 1e-31
 Identities = 32/80 (40%), Positives = 50/80 (62%)
 Frame = -3

Query: 301 VAERRNRTLVEVIRCLLNDSSLSKIWWGEALSIANYIINYWPNKSINLKIPKEI*RNEKL 122
           V++R+NRT++E+ RC+L +  L K+ W EA++ + Y++N  P KS+  K P E     K 
Sbjct: 608 VSKRKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIEAWSGVKP 667

Query: 121 VVSYLKVFGRK*FYHIPKEK 62
            V +LKVFG   + H+P  K
Sbjct: 668 SVKHLKVFGSFCYLHVPSVK 687



 Score = 61.6 bits (148), Expect(4) = 1e-31
 Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
 Frame = -2

Query: 722 LIECLKKITTPNSTYKSHVLGK*HKLPFSKK-EKRAKRCLELMHTDIFGPLLI*TNHDYY 546
           ++E + +I+    T +S  LGK  + PF +   KRA   LEL+H+DI GP+   +  +  
Sbjct: 466 MVEDMPEISVNAQTCESCELGKQQRQPFPQNMSKRATHKLELIHSDICGPMSTTSLSNNV 525

Query: 545 YFATFIDDYLRFFWVYLLKQKIESL 471
           YFA FIDD+ R  WVY LK K + L
Sbjct: 526 YFALFIDDFSRMTWVYFLKTKSQVL 550



 Score = 44.3 bits (103), Expect(4) = 1e-31
 Identities = 24/69 (34%), Positives = 35/69 (50%)
 Frame = -1

Query: 498 FT*TKNRVLNKFVGYREKVKIEKGEKICKLMRDGGMEYXXXXXXXXXXXXSIQR*LTIPY 319
           F  TK++VL+ F  +++ V+ + G+ +  L  D G EY             I   LT PY
Sbjct: 542 FLKTKSQVLSMFKSFKKMVETQSGQNVKVLRTDNGGEYTSKEFSVFCQEAGIVHQLTAPY 601

Query: 318 NPQQNG*QK 292
           +PQQNG  K
Sbjct: 602 SPQQNGVSK 610



 Score = 30.8 bits (68), Expect(4) = 1e-31
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -2

Query: 71  KRKKLDNKAKLGIFIGYLLEPK 6
           KR KLD +A+ G+F+GY+ E K
Sbjct: 687 KRGKLDERAEKGVFVGYVAESK 708


>emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]
          Length = 2041

 Score = 68.9 bits (167), Expect(4) = 5e-31
 Identities = 33/80 (41%), Positives = 50/80 (62%)
 Frame = -3

Query: 301  VAERRNRTLVEVIRCLLNDSSLSKIWWGEALSIANYIINYWPNKSINLKIPKEI*RNEKL 122
            V+ER+NRT++E+ RC+L +  L K+ W EA++ + Y++N  P KS+  K P E     K 
Sbjct: 1341 VSERKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIEAWSGVKP 1400

Query: 121  VVSYLKVFGRK*FYHIPKEK 62
             V +LKVFG   + H+P  K
Sbjct: 1401 SVKHLKVFGSFCYLHVPSVK 1420



 Score = 61.6 bits (148), Expect(4) = 5e-31
 Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
 Frame = -2

Query: 722  LIECLKKITTPNSTYKSHVLGK*HKLPFSKK-EKRAKRCLELMHTDIFGPLLI*TNHDYY 546
            ++E + +I+    T +S  LGK  + PF +   KRA   LEL+H+DI GP+   +  +  
Sbjct: 1199 MVEDMPEISVNAQTCESCELGKQQRQPFPQNMSKRATHKLELIHSDICGPMSTTSLSNNV 1258

Query: 545  YFATFIDDYLRFFWVYLLKQKIESL 471
            YFA FIDD+ R  WVY LK K + L
Sbjct: 1259 YFALFIDDFSRMTWVYFLKTKSQVL 1283



 Score = 41.2 bits (95), Expect(4) = 5e-31
 Identities = 22/66 (33%), Positives = 33/66 (50%)
 Frame = -1

Query: 498  FT*TKNRVLNKFVGYREKVKIEKGEKICKLMRDGGMEYXXXXXXXXXXXXSIQR*LTIPY 319
            F  TK++VL+ F  +++ V+ + G+ +  L  D G EY             I   LT PY
Sbjct: 1275 FLKTKSQVLSMFKSFKKMVETQSGQXVKVLRTDNGGEYTSKEFSVFCQEAGIVHQLTAPY 1334

Query: 318  NPQQNG 301
            +PQ NG
Sbjct: 1335 SPQXNG 1340



 Score = 30.0 bits (66), Expect(4) = 5e-31
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 71   KRKKLDNKAKLGIFIGYLLEPK 6
            KR KLD +A+ G+F+GY  E K
Sbjct: 1420 KRGKLDERAEKGVFVGYAAESK 1441


>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1499

 Score = 69.3 bits (168), Expect(4) = 1e-29
 Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
 Frame = -3

Query: 301 VAERRNRTLVEVIRCLLNDSSLSKIWWGEALSIANYIINYWPNKSINLKI-PKEI*RNEK 125
           VAERRNRTLVE+ R ++ +  LS  +W EA++ + Y+ N  P+KS+   + P EI   +K
Sbjct: 619 VAERRNRTLVEMARSMIEEKKLSNKFWAEAIATSTYLQNRLPSKSLEKGVTPMEIWSGKK 678

Query: 124 LVVSYLKVFGRK*FYHIPKEK 62
             V +LKVFG   + HIP EK
Sbjct: 679 PSVDHLKVFGCVCYIHIPDEK 699



 Score = 54.7 bits (130), Expect(4) = 1e-29
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
 Frame = -2

Query: 722 LIECLKKITTPNSTYKSHVLGK*HKLPFSKK-EKRAKRCLELMHTDIFGPLLI*TNHDYY 546
           ++E L K         +  +GK  +  F KK +    + LEL+H+D+ GP+   + +   
Sbjct: 477 IVEKLPKFEVIKGICAACEMGKQSRRSFPKKSQSNTNKTLELIHSDVCGPMQTESINGSR 536

Query: 545 YFATFIDDYLRFFWVYLLKQKIE 477
           YF TFIDD+ R  WVY LK K E
Sbjct: 537 YFLTFIDDFSRMTWVYFLKNKSE 559



 Score = 38.9 bits (89), Expect(4) = 1e-29
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = -1

Query: 498 FT*TKNRVLNKFVGYREKVKIEKGEKICKLMRDGGMEYXXXXXXXXXXXXSIQR*LTIPY 319
           F   K+ V+ KF  ++  V+ +   +I +L  DGG E+             I   +T PY
Sbjct: 553 FLKNKSEVITKFKIFKPYVENQSESRIKRLRTDGGGEFLSREFIKLCQESGIHHEITTPY 612

Query: 318 NPQQNG 301
           +PQQNG
Sbjct: 613 SPQQNG 618



 Score = 33.9 bits (76), Expect(4) = 1e-29
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = -2

Query: 89  IVLSHSKRKKLDNKAKLGIFIGYLLEPK 6
           I +   KR+KLD KAK GIF+GY  E K
Sbjct: 693 IHIPDEKRRKLDTKAKQGIFVGYSNESK 720


>emb|CAN71037.1| hypothetical protein VITISV_011061 [Vitis vinifera]
          Length = 1220

 Score = 67.0 bits (162), Expect(4) = 1e-27
 Identities = 32/80 (40%), Positives = 50/80 (62%)
 Frame = -3

Query: 301 VAERRNRTLVEVIRCLLNDSSLSKIWWGEALSIANYIINYWPNKSINLKIPKEI*RNEKL 122
           V+ER+N+T++E+ RC+L +  L K+ W EA++ + Y++N  P KS+  K P E     K 
Sbjct: 587 VSERKNKTVMEMARCMLFEKRLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIEAWFGVKP 646

Query: 121 VVSYLKVFGRK*FYHIPKEK 62
            V +LKVFG   + H+P  K
Sbjct: 647 SVKHLKVFGSLCYLHVPSVK 666



 Score = 57.8 bits (138), Expect(4) = 1e-27
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
 Frame = -2

Query: 722 LIECLKKITTPNSTYKSHVLGK*HKLPFSKK-EKRAKRCLELMHTDIFGPLLI*TNHDYY 546
           ++E + +I+    T +S  LGK  + PF +   KRA   LEL+H+ I GP+ I +  +  
Sbjct: 456 MVEDMLEISVNAQTCESCELGKQQRQPFPQNMSKRATHELELIHSYICGPMSIASLSNNV 515

Query: 545 YFATFIDDYLRFFWVYLLKQKIESL 471
           YFA FIDD  R  WVY LK K + L
Sbjct: 516 YFALFIDDLSRMTWVYFLKTKSQVL 540



 Score = 35.0 bits (79), Expect(4) = 1e-27
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = -1

Query: 498 FT*TKNRVLNKFVGYREKVKIEKGEKICKLMRDGGMEYXXXXXXXXXXXXSIQR*LTIPY 319
           F  TK++VL+ F  +++ V+ + G+ +  L+ D G EY                 LT PY
Sbjct: 532 FLKTKSQVLSMFKSFKKMVETQSGQNVKVLIIDNGGEYISKEFN-----------LTAPY 580

Query: 318 NPQQN 304
            PQQN
Sbjct: 581 LPQQN 585



 Score = 30.0 bits (66), Expect(4) = 1e-27
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 71  KRKKLDNKAKLGIFIGYLLEPK 6
           KR KLD +A+ G+F+GY  E K
Sbjct: 666 KRGKLDERAEKGVFVGYAAESK 687


>emb|CAN80930.1| hypothetical protein VITISV_005279 [Vitis vinifera]
          Length = 1291

 Score = 68.9 bits (167), Expect(4) = 2e-27
 Identities = 33/80 (41%), Positives = 50/80 (62%)
 Frame = -3

Query: 301 VAERRNRTLVEVIRCLLNDSSLSKIWWGEALSIANYIINYWPNKSINLKIPKEI*RNEKL 122
           V+ER+NRT++E+ RC+L +  L K+ W EA++ + Y++N  P KS+  K P E     K 
Sbjct: 603 VSERKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIEAWSGVKP 662

Query: 121 VVSYLKVFGRK*FYHIPKEK 62
            V +LKVFG   + H+P  K
Sbjct: 663 SVKHLKVFGSFCYLHVPSVK 682



 Score = 61.6 bits (148), Expect(4) = 2e-27
 Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
 Frame = -2

Query: 722 LIECLKKITTPNSTYKSHVLGK*HKLPFSKK-EKRAKRCLELMHTDIFGPLLI*TNHDYY 546
           ++E + +I+    T +S  LGK  + PF +   KRA   LEL+H+DI GP+   +  +  
Sbjct: 480 MVEDMPEISVNAQTCESCELGKQQRQPFPQNMSKRATHKLELIHSDICGPMSTTSLSNNV 539

Query: 545 YFATFIDDYLRFFWVYLLKQKIESL 471
           YFA FIDD+ R  WVY LK K + L
Sbjct: 540 YFALFIDDFSRMTWVYFLKTKSQVL 564



 Score = 30.0 bits (66), Expect(4) = 2e-27
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 71  KRKKLDNKAKLGIFIGYLLEPK 6
           KR KLD +A+ G+F+GY  E K
Sbjct: 682 KRGKLDERAEKGVFVGYAAESK 703



 Score = 28.9 bits (63), Expect(4) = 2e-27
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = -1

Query: 498 FT*TKNRVLNKFVGYREKVKIEKGEKICKLMRDGGMEYXXXXXXXXXXXXSIQR*LTIPY 319
           F  TK++VL+ F  +++ V+ + G+ +      G  E                  LT PY
Sbjct: 556 FLKTKSQVLSMFKSFKKMVETQSGQNV-----KGASELIME--------------LTTPY 596

Query: 318 NPQQNG 301
           +PQQNG
Sbjct: 597 SPQQNG 602


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score = 68.2 bits (165), Expect(4) = 4e-27
 Identities = 35/80 (43%), Positives = 50/80 (62%)
 Frame = -3

Query: 301 VAERRNRTLVEVIRCLLNDSSLSKIWWGEALSIANYIINYWPNKSINLKIPKEI*RNEKL 122
           VAER+NRT++E+ R +L    L K  W EA++ A Y++N  P KS++ K P+E     K 
Sbjct: 630 VAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKS 689

Query: 121 VVSYLKVFGRK*FYHIPKEK 62
            VS+L+VFG     H+P EK
Sbjct: 690 GVSHLRVFGSIAHAHVPDEK 709



 Score = 60.8 bits (146), Expect(4) = 4e-27
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
 Frame = -2

Query: 722 LIECLKKITTPNSTYKSHVLGK*HKLPFSKKEK-RAKRCLELMHTDIFGPLLI*TNHDYY 546
           ++  L  I  PN   +  +LGK  K+ F K+   RA++ LEL+HTD+ GP+   +     
Sbjct: 488 MVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSN 547

Query: 545 YFATFIDDYLRFFWVYLLKQKIE 477
           YF  FIDD+ R  WVY LK+K E
Sbjct: 548 YFLLFIDDFSRKTWVYFLKEKSE 570



 Score = 33.5 bits (75), Expect(4) = 4e-27
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -1

Query: 486 KNRVLNKFVGYREKVKIEKGEKICKLMRDGGMEYXXXXXXXXXXXXSIQR*LTIPYNPQQ 307
           K+ V   F  ++  V+ E G  I  +  D G E+             I+R LT+P +PQQ
Sbjct: 568 KSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQ 627

Query: 306 NG 301
           NG
Sbjct: 628 NG 629



 Score = 25.8 bits (55), Expect(4) = 4e-27
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 71  KRKKLDNKAKLGIFIGY 21
           KR KLD+K++  IFIGY
Sbjct: 709 KRSKLDDKSEKYIFIGY 725


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
           gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
           polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score = 67.8 bits (164), Expect(4) = 9e-27
 Identities = 35/80 (43%), Positives = 50/80 (62%)
 Frame = -3

Query: 301 VAERRNRTLVEVIRCLLNDSSLSKIWWGEALSIANYIINYWPNKSINLKIPKEI*RNEKL 122
           VAER+NRT++E+ R +L    L K  W EA++ A Y++N  P KS++ K P+E     K 
Sbjct: 630 VAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKP 689

Query: 121 VVSYLKVFGRK*FYHIPKEK 62
            VS+L+VFG     H+P EK
Sbjct: 690 GVSHLRVFGSIAHAHVPDEK 709



 Score = 60.1 bits (144), Expect(4) = 9e-27
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
 Frame = -2

Query: 722 LIECLKKITTPNSTYKSHVLGK*HKLPFSKKEK-RAKRCLELMHTDIFGPLLI*TNHDYY 546
           ++  L  I  PN   +  +LGK  K+ F K+   RA++ LEL+HTD+ GP+   +     
Sbjct: 488 MVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSN 547

Query: 545 YFATFIDDYLRFFWVYLLKQKIE 477
           YF  FIDD+ R  WVY LK+K E
Sbjct: 548 YFLLFIDDFSRKTWVYFLKEKSE 570



 Score = 33.5 bits (75), Expect(4) = 9e-27
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -1

Query: 486 KNRVLNKFVGYREKVKIEKGEKICKLMRDGGMEYXXXXXXXXXXXXSIQR*LTIPYNPQQ 307
           K+ V   F  ++  V+ E G  I  +  D G E+             I+R LT+P +PQQ
Sbjct: 568 KSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQ 627

Query: 306 NG 301
           NG
Sbjct: 628 NG 629



 Score = 25.8 bits (55), Expect(4) = 9e-27
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 71  KRKKLDNKAKLGIFIGY 21
           KR KLD+K++  IFIGY
Sbjct: 709 KRSKLDDKSEKYIFIGY 725


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis
           thaliana]
          Length = 1272

 Score = 67.8 bits (164), Expect(4) = 2e-26
 Identities = 35/80 (43%), Positives = 50/80 (62%)
 Frame = -3

Query: 301 VAERRNRTLVEVIRCLLNDSSLSKIWWGEALSIANYIINYWPNKSINLKIPKEI*RNEKL 122
           VAER+NRT++E+ R +L    L K  W EA++ A Y++N  P KS++ K P+E     K 
Sbjct: 630 VAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKP 689

Query: 121 VVSYLKVFGRK*FYHIPKEK 62
            VS+L+VFG     H+P EK
Sbjct: 690 GVSHLRVFGSIAHAHVPDEK 709



 Score = 58.2 bits (139), Expect(4) = 2e-26
 Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
 Frame = -2

Query: 722 LIECLKKITTPNSTYKSHVLGK*HKLPFSKKEK-RAKRCLELMHTDIFGPLLI*TNHDYY 546
           ++  L  I  PN   +  +LG   K+ F K+   RA++ LEL+HTD+ GP+   +     
Sbjct: 488 MVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSN 547

Query: 545 YFATFIDDYLRFFWVYLLKQKIE 477
           YF  FIDD+ R  WVY LK+K E
Sbjct: 548 YFLLFIDDFSRKTWVYFLKEKSE 570



 Score = 34.3 bits (77), Expect(4) = 2e-26
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -1

Query: 486 KNRVLNKFVGYREKVKIEKGEKICKLMRDGGMEYXXXXXXXXXXXXSIQR*LTIPYNPQQ 307
           K+ V   F  ++  V+ E G  I  +  D G E+             I+R LT+P +PQQ
Sbjct: 568 KSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQ 627

Query: 306 NG 301
           NG
Sbjct: 628 NG 629



 Score = 25.8 bits (55), Expect(4) = 2e-26
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 71  KRKKLDNKAKLGIFIGY 21
           KR KLD+K++  IFIGY
Sbjct: 709 KRNKLDDKSEKYIFIGY 725


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score = 66.2 bits (160), Expect(4) = 2e-26
 Identities = 34/80 (42%), Positives = 49/80 (61%)
 Frame = -3

Query: 301 VAERRNRTLVEVIRCLLNDSSLSKIWWGEALSIANYIINYWPNKSINLKIPKEI*RNEKL 122
           V ER+NRT++E+ R +L    L K  W EA++ A Y++N  P KS++ K P+E     K 
Sbjct: 630 VVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKP 689

Query: 121 VVSYLKVFGRK*FYHIPKEK 62
            VS+L+VFG     H+P EK
Sbjct: 690 GVSHLRVFGSIAHAHVPDEK 709



 Score = 60.1 bits (144), Expect(4) = 2e-26
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
 Frame = -2

Query: 722 LIECLKKITTPNSTYKSHVLGK*HKLPFSKKEK-RAKRCLELMHTDIFGPLLI*TNHDYY 546
           ++  L  I  PN   +  +LGK  K+ F K+   RA++ LEL+HTD+ GP+   +     
Sbjct: 488 MVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSN 547

Query: 545 YFATFIDDYLRFFWVYLLKQKIE 477
           YF  FIDD+ R  WVY LK+K E
Sbjct: 548 YFLLFIDDFSRKTWVYFLKEKSE 570



 Score = 33.5 bits (75), Expect(4) = 2e-26
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -1

Query: 486 KNRVLNKFVGYREKVKIEKGEKICKLMRDGGMEYXXXXXXXXXXXXSIQR*LTIPYNPQQ 307
           K+ V   F  ++  V+ E G  I  +  D G E+             I+R LT+P +PQQ
Sbjct: 568 KSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQ 627

Query: 306 NG 301
           NG
Sbjct: 628 NG 629



 Score = 25.8 bits (55), Expect(4) = 2e-26
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 71  KRKKLDNKAKLGIFIGY 21
           KR KLD+K++  IFIGY
Sbjct: 709 KRSKLDDKSEKYIFIGY 725


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score = 66.2 bits (160), Expect(4) = 2e-26
 Identities = 34/80 (42%), Positives = 49/80 (61%)
 Frame = -3

Query: 301 VAERRNRTLVEVIRCLLNDSSLSKIWWGEALSIANYIINYWPNKSINLKIPKEI*RNEKL 122
           V ER+NRT++E+ R +L    L K  W EA++ A Y++N  P KS++ K P+E     K 
Sbjct: 630 VVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKP 689

Query: 121 VVSYLKVFGRK*FYHIPKEK 62
            VS+L+VFG     H+P EK
Sbjct: 690 GVSHLRVFGSIAHAHVPDEK 709



 Score = 60.1 bits (144), Expect(4) = 2e-26
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
 Frame = -2

Query: 722 LIECLKKITTPNSTYKSHVLGK*HKLPFSKKEK-RAKRCLELMHTDIFGPLLI*TNHDYY 546
           ++  L  I  PN   +  +LGK  K+ F K+   RA++ LEL+HTD+ GP+   +     
Sbjct: 488 MVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSN 547

Query: 545 YFATFIDDYLRFFWVYLLKQKIE 477
           YF  FIDD+ R  WVY LK+K E
Sbjct: 548 YFLLFIDDFSRKTWVYFLKEKSE 570



 Score = 33.5 bits (75), Expect(4) = 2e-26
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -1

Query: 486 KNRVLNKFVGYREKVKIEKGEKICKLMRDGGMEYXXXXXXXXXXXXSIQR*LTIPYNPQQ 307
           K+ V   F  ++  V+ E G  I  +  D G E+             I+R LT+P +PQQ
Sbjct: 568 KSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQ 627

Query: 306 NG 301
           NG
Sbjct: 628 NG 629



 Score = 25.8 bits (55), Expect(4) = 2e-26
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 71  KRKKLDNKAKLGIFIGY 21
           KR KLD+K++  IFIGY
Sbjct: 709 KRSKLDDKSEKYIFIGY 725


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
           protein product [Nicotiana tabacum]
          Length = 1328

 Score = 74.7 bits (182), Expect(4) = 5e-26
 Identities = 36/80 (45%), Positives = 55/80 (68%)
 Frame = -3

Query: 301 VAERRNRTLVEVIRCLLNDSSLSKIWWGEALSIANYIINYWPNKSINLKIPKEI*RNEKL 122
           VAER NRT+VE +R +L  + L K +WGEA+  A Y+IN  P+  +  +IP+ +  N+++
Sbjct: 584 VAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEV 643

Query: 121 VVSYLKVFGRK*FYHIPKEK 62
             S+LKVFG + F H+PKE+
Sbjct: 644 SYSHLKVFGCRAFAHVPKEQ 663



 Score = 52.8 bits (125), Expect(4) = 5e-26
 Identities = 25/62 (40%), Positives = 37/62 (59%)
 Frame = -2

Query: 668 VLGK*HKLPFSKKEKRAKRCLELMHTDIFGPLLI*TNHDYYYFATFIDDYLRFFWVYLLK 489
           + GK H++ F    +R    L+L+++D+ GP+ I +     YF TFIDD  R  WVY+LK
Sbjct: 461 LFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILK 520

Query: 488 QK 483
            K
Sbjct: 521 TK 522



 Score = 35.0 bits (79), Expect(4) = 5e-26
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -1

Query: 489 TKNRVLNKFVGYREKVKIEKGEKICKLMRDGGMEYXXXXXXXXXXXXSIQR*LTIPYNPQ 310
           TK++V   F  +   V+ E G K+ +L  D G EY             I+   T+P  PQ
Sbjct: 521 TKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQ 580

Query: 309 QNG 301
            NG
Sbjct: 581 HNG 583



 Score = 21.9 bits (45), Expect(4) = 5e-26
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 71  KRKKLDNKAKLGIFIGY 21
           +R KLD+K+   IFIGY
Sbjct: 663 QRTKLDDKSIPCIFIGY 679


>emb|CAN72675.1| hypothetical protein VITISV_020405 [Vitis vinifera]
          Length = 1919

 Score = 60.8 bits (146), Expect(4) = 7e-26
 Identities = 29/80 (36%), Positives = 46/80 (57%)
 Frame = -3

Query: 301  VAERRNRTLVEVIRCLLNDSSLSKIWWGEALSIANYIINYWPNKSINLKIPKEI*RNEKL 122
            V+ER+NR  +E+ RC+L +  L K+ W + ++ + Y++N  P KS+  K P E     K 
Sbjct: 1061 VSERKNRXXMEMARCMLFEKKLPKLLWAKVVNTSVYLLNRLPTKSVQSKTPIEAWSGVKP 1120

Query: 121  VVSYLKVFGRK*FYHIPKEK 62
             V +LKVF    + H+P  K
Sbjct: 1121 FVKHLKVFSSFCYLHVPSVK 1140



 Score = 52.0 bits (123), Expect(4) = 7e-26
 Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = -2

Query: 722  LIECLKKITTPNSTYKSHVLGK*HKLPFSKK-EKRAKRCLELMHTDIFGPLLI*TNHDYY 546
            ++E + +I+    T +S  LGK    PF +   KRA   L L+H+DI GP+   +  +  
Sbjct: 919  MVEDMPEISVNAQTCESCELGKQQXQPFPQNMSKRATHKLGLIHSDICGPMSTASLSNNV 978

Query: 545  YFATFIDDYLRFFWVYLLKQKIESL 471
            YFA FIDD  R   VY LK K + L
Sbjct: 979  YFALFIDDLNRMIXVYFLKTKSQVL 1003



 Score = 41.2 bits (95), Expect(4) = 7e-26
 Identities = 22/66 (33%), Positives = 34/66 (51%)
 Frame = -1

Query: 498  FT*TKNRVLNKFVGYREKVKIEKGEKICKLMRDGGMEYXXXXXXXXXXXXSIQR*LTIPY 319
            F  TK++VL+ F  +++ V+ + G+ +  L  D G EY             I   LT PY
Sbjct: 995  FLKTKSQVLSVFKRFKKMVETQSGQNVKVLRTDNGGEYISKEFNVFCQEAGIVHQLTTPY 1054

Query: 318  NPQQNG 301
            +PQ+NG
Sbjct: 1055 SPQRNG 1060



 Score = 30.0 bits (66), Expect(4) = 7e-26
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 71   KRKKLDNKAKLGIFIGYLLEPK 6
            KR KLD +A+ G+F+GY  E K
Sbjct: 1140 KRGKLDERAEKGVFVGYAAESK 1161


>gb|EOY11267.1| Uncharacterized protein TCM_026511 [Theobroma cacao]
          Length = 1318

 Score = 60.8 bits (146), Expect(4) = 1e-25
 Identities = 30/80 (37%), Positives = 49/80 (61%)
 Frame = -3

Query: 301 VAERRNRTLVEVIRCLLNDSSLSKIWWGEALSIANYIINYWPNKSINLKIPKEI*RNEKL 122
           V+ER+NRT++E+IRCLL +  + K +W EA + A  + N  P  ++N   P E+    K 
Sbjct: 621 VSERKNRTIMEMIRCLLFEQQMPKYFWAEAANFAVTLQNLIPTTALNSMTPFEVWHGYKP 680

Query: 121 VVSYLKVFGRK*FYHIPKEK 62
            +S +KVFG   +  +P++K
Sbjct: 681 SISNVKVFGCIAYAQVPQQK 700



 Score = 59.3 bits (142), Expect(4) = 1e-25
 Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
 Frame = -2

Query: 725 NLIECLKKITTPNSTYKSHVLGK*HKLPFSKKEK-RAKRCLELMHTDIFGPLLI*TNHDY 549
           NL+  +  IT    T +  + GK  + PF K+ + R    L+L+HTDI GP+   + +  
Sbjct: 478 NLVNDMPIITEVEKTCEVCLQGKQSRHPFPKQSQTRTANRLQLIHTDICGPIGTLSLNGN 537

Query: 548 YYFATFIDDYLRFFWVYLLKQKIESL 471
            YF  FIDD+ RF W++ LKQK E++
Sbjct: 538 KYFILFIDDFSRFCWIFFLKQKSEAI 563



 Score = 39.7 bits (91), Expect(4) = 1e-25
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = -1

Query: 486 KNRVLNKFVGYREKVKIEKGEKICKLMRDGGMEYXXXXXXXXXXXXSIQR*LTIPYNPQQ 307
           K+  +  F+ ++  V+ +  +KI  L  D G EY             I++ LT+PY+PQQ
Sbjct: 559 KSEAIQYFMKFKVLVEKQTDQKIKALRSDNGSEYTSNEFKALLTQEGIKQFLTVPYSPQQ 618

Query: 306 NG 301
           NG
Sbjct: 619 NG 620



 Score = 23.5 bits (49), Expect(4) = 1e-25
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 71  KRKKLDNKAKLGIFIGY 21
           KR KLD+K ++ I +GY
Sbjct: 700 KRTKLDSKTQISINLGY 716


>gb|EOY19734.1| Copia-like retrotransposable element, putative [Theobroma cacao]
          Length = 1207

 Score = 63.9 bits (154), Expect(3) = 4e-25
 Identities = 28/69 (40%), Positives = 48/69 (69%)
 Frame = -3

Query: 301 VAERRNRTLVEVIRCLLNDSSLSKIWWGEALSIANYIINYWPNKSINLKIPKEI*RNEKL 122
           V++R+NRTL+E+ RCLL +  L + +W EA++ ANY++N  P K++    P ++    K 
Sbjct: 542 VSKRKNRTLMEMARCLLFEKKLPRSFWTEAVNTANYLLNIAPTKALTKGTPHDVWYGTKP 601

Query: 121 VVSYLKVFG 95
           +V++LK+FG
Sbjct: 602 LVAHLKIFG 610



 Score = 58.9 bits (141), Expect(3) = 4e-25
 Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
 Frame = -2

Query: 725 NLIECLKKITTPNSTYKSHVLGK*HKLPFSKKEK-RAKRCLELMHTDIFGPLLI*TNHDY 549
           +L+E +  I + N    +   GK  K PF K+ K RA + L+L+HTDI GP++  +    
Sbjct: 399 HLVENIPAIGSFNYICDTCQYGKQSKKPFPKQAKWRATQKLQLVHTDIGGPMMTASLSGN 458

Query: 548 YYFATFIDDYLRFFWVYLLKQKIESLINLL 459
            ++  FID++ R+ WVY LK K E+  N L
Sbjct: 459 KFYLLFIDEFSRYCWVYFLKHKAEAFNNFL 488



 Score = 38.9 bits (89), Expect(3) = 4e-25
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = -1

Query: 486 KNRVLNKFVGYREKVKIEKGEKICKLMRDGGMEYXXXXXXXXXXXXSIQR*LTIPYNPQQ 307
           K    N F+ ++  V+ +    I  L  + G EY             IQ+ LT+PYNPQQ
Sbjct: 480 KAEAFNNFLKFKAFVENQTSLTIKMLRSNNGKEYTSLEFQRYLTQFRIQQQLTVPYNPQQ 539

Query: 306 NG*QK 292
           NG  K
Sbjct: 540 NGVSK 544


>gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 822

 Score = 62.8 bits (151), Expect(4) = 2e-24
 Identities = 33/80 (41%), Positives = 47/80 (58%)
 Frame = -3

Query: 301 VAERRNRTLVEVIRCLLNDSSLSKIWWGEALSIANYIINYWPNKSINLKIPKEI*RNEKL 122
           V+ERRNR+LVE+ R ++    L    W EA+ +A Y  N  P +++  K P E   + K 
Sbjct: 322 VSERRNRSLVEMARAMIKAKDLPLKLWAEAVHVAAYAQNRTPTRTLKNKTPLEAWSDSKP 381

Query: 121 VVSYLKVFGRK*FYHIPKEK 62
            VS++KVFG   + HIP EK
Sbjct: 382 SVSHMKVFGSICYVHIPDEK 401



 Score = 56.6 bits (135), Expect(4) = 2e-24
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
 Frame = -2

Query: 722 LIECLKKITTPNSTYKSHVLGK*HKLPFSKK-EKRAKRCLELMHTDIFGPLLI*TNHDYY 546
           ++  L K        +S +L K  + PF K+ E RAK  LEL+H+D+ GP+   + +   
Sbjct: 180 MVTGLPKFNVEEGKCESCILSKHSRDPFPKESETRAKHKLELIHSDVCGPMQNSSINGSR 239

Query: 545 YFATFIDDYLRFFWVYLLKQKIE 477
           Y  TFIDD  R  WVY LK K E
Sbjct: 240 YILTFIDDATRMVWVYFLKAKSE 262



 Score = 32.7 bits (73), Expect(4) = 2e-24
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = -1

Query: 498 FT*TKNRVLNKFVGYREKVKIEKGEKICKLMRDGGMEYXXXXXXXXXXXXSIQR*LTIPY 319
           F   K+ V   F  ++  V+     +I KL  D G EY             I+R LT  Y
Sbjct: 256 FLKAKSEVFQTFKKFKNLVENNANCRIKKLRIDRGTEYLSKEFSEFLEGNGIERQLTAAY 315

Query: 318 NPQQN 304
           +PQQN
Sbjct: 316 SPQQN 320



 Score = 27.3 bits (59), Expect(4) = 2e-24
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 71  KRKKLDNKAKLGIFIGYLLEPK 6
           KR+K D+K+K  IF+GY  + K
Sbjct: 401 KRRKWDDKSKRAIFVGYSSQTK 422


>ref|XP_006590177.1| PREDICTED: uncharacterized protein LOC102669657 [Glycine max]
          Length = 711

 Score = 68.6 bits (166), Expect(3) = 2e-24
 Identities = 32/80 (40%), Positives = 51/80 (63%)
 Frame = -3

Query: 301 VAERRNRTLVEVIRCLLNDSSLSKIWWGEALSIANYIINYWPNKSINLKIPKEI*RNEKL 122
           VAER+NRT++ ++R +L    + K +W EA++ A Y+ N  P +S++ K P+E     K 
Sbjct: 503 VAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLTNRSPTRSVHEKTPQEAWSGRKP 562

Query: 121 VVSYLKVFGRK*FYHIPKEK 62
            +S+LKVFG   + H+P EK
Sbjct: 563 GISHLKVFGSIAYTHVPDEK 582



 Score = 56.2 bits (134), Expect(3) = 2e-24
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
 Frame = -2

Query: 722 LIECLKKITTPNSTYKSHVLGK*HKLPFSKKEK-RAKRCLELMHTDIFGPLLI*TNHDYY 546
           ++  L  I  P+   +  ++GK  +  F K+   RA + LEL+HTD+ GP+   +     
Sbjct: 361 MVRGLPSINHPDQLCEGCLIGKQFRKSFPKESTTRATKPLELIHTDVCGPIKPNSFGKNK 420

Query: 545 YFATFIDDYLRFFWVYLLKQKIESLIN 465
           YF  FIDDY R  WVY LK+K E   N
Sbjct: 421 YFLLFIDDYSRKTWVYFLKEKSEVFEN 447



 Score = 35.0 bits (79), Expect(3) = 2e-24
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -1

Query: 486 KNRVLNKFVGYREKVKIEKGEKICKLMRDGGMEYXXXXXXXXXXXXSIQR*LTIPYNPQQ 307
           K+ V   F  ++  V+ E G  I  +  D G E+             I+R LT+P +PQQ
Sbjct: 441 KSEVFENFKKFKALVEKESGLSIKAMRSDRGGEFTSNKFNKYCEDHGIRRPLTVPRSPQQ 500

Query: 306 NG 301
           NG
Sbjct: 501 NG 502


>gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157|gb|ACN78980.1|
           copia-type polyprotein [Glycine max]
          Length = 1042

 Score = 61.6 bits (148), Expect(4) = 1e-23
 Identities = 29/79 (36%), Positives = 49/79 (62%)
 Frame = -3

Query: 301 VAERRNRTLVEVIRCLLNDSSLSKIWWGEALSIANYIINYWPNKSINLKIPKEI*RNEKL 122
           VAER+NRT++ + RC+L   ++ K +W EA++ A Y+ N  P K++  + P+E     K 
Sbjct: 321 VAERKNRTILNMTRCMLKAKNMPKEFWAEAVACAVYLSNRSPTKNVKDQTPQEAWSGVKP 380

Query: 121 VVSYLKVFGRK*FYHIPKE 65
            V +L+VFG   + H+P +
Sbjct: 381 RVDHLRVFGSIAYAHVPDQ 399



 Score = 60.1 bits (144), Expect(4) = 1e-23
 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
 Frame = -2

Query: 722 LIECLKKITTPNSTYKSHVLGK*HKLPFSKK-EKRAKRCLELMHTDIFGPLLI*TNHDYY 546
           +++ + +I  PN   ++ +LGK  +  F K+   RAK  L+L++TD+ GP+   +  +  
Sbjct: 179 MVKGMPQINHPNQLCEACLLGKHARRSFPKEANSRAKEPLQLVYTDVCGPINPPSCGNNK 238

Query: 545 YFATFIDDYLRFFWVYLLKQKIESLI 468
           YF  FIDDY R  WVY LKQK E+ +
Sbjct: 239 YFLLFIDDYSRKTWVYFLKQKSEAFV 264



 Score = 33.1 bits (74), Expect(4) = 1e-23
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = -1

Query: 486 KNRVLNKFVGYREKVKIEKGEKICKLMRDGGMEYXXXXXXXXXXXXSIQR*LTIPYNPQQ 307
           K+     F  ++  V+ E G  I  L  D G E+             I+R LT+P +PQQ
Sbjct: 259 KSEAFVAFKNFKALVEKESGYVIKALRSDRGGEFTSKEFNEFCEKYGIRRPLTVPRSPQQ 318

Query: 306 NG 301
           NG
Sbjct: 319 NG 320



 Score = 21.6 bits (44), Expect(4) = 1e-23
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 68  RKKLDNKAKLGIFIGY 21
           R KLD++++  +FIGY
Sbjct: 401 RFKLDDRSEKHVFIGY 416


>ref|XP_003376336.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trichinella spiralis] gi|316974954|gb|EFV58419.1|
           retrovirus-related Pol polyprotein from transposon TNT
           1-94 [Trichinella spiralis]
          Length = 1003

 Score = 62.8 bits (151), Expect(4) = 2e-23
 Identities = 34/77 (44%), Positives = 46/77 (59%)
 Frame = -3

Query: 301 VAERRNRTLVEVIRCLLNDSSLSKIWWGEALSIANYIINYWPNKSINLKIPKEI*RNEKL 122
           VAER NRTLVE  R +L D++LS   W EA+  ANY+ N  P K++    P+E     K 
Sbjct: 278 VAERMNRTLVEKARTMLIDANLSPDLWAEAVGTANYLRNRCPTKALRKVTPEEAWSGRKP 337

Query: 121 VVSYLKVFGRK*FYHIP 71
            +++LKVFG     H+P
Sbjct: 338 NLAHLKVFGCLAMVHVP 354



 Score = 54.3 bits (129), Expect(4) = 2e-23
 Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
 Frame = -2

Query: 662 GK*HKLPFSKKE-KRAKRCLELMHTDIFGPLLI*TNHDYYYFATFIDDYLRFFWVYLLKQ 486
           GK  +LPF K   KR+K  LEL+H+DI GP+ + +     YF +FIDD+ R  +VY LK 
Sbjct: 156 GKQCRLPFPKSATKRSKEVLELVHSDICGPMQVASVGGARYFLSFIDDFSRKSFVYFLKH 215

Query: 485 KIESL 471
           K E L
Sbjct: 216 KNEVL 220



 Score = 36.6 bits (83), Expect(4) = 2e-23
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = -1

Query: 486 KNRVLNKFVGYREKVKIEKGEKICKLMRDGGMEYXXXXXXXXXXXXSIQR*LTIPYNPQQ 307
           KN VL+KF  +   V+ +  +++  L  D G EY             I+   TIP  PQQ
Sbjct: 216 KNEVLSKFKDFIAMVERQTSKRVKCLRTDNGREYVNNMFAEFLVRKGIRHERTIPETPQQ 275

Query: 306 NG 301
           NG
Sbjct: 276 NG 277



 Score = 21.9 bits (45), Expect(4) = 2e-23
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 71  KRKKLDNKAKLGIFIGY 21
           +RKK D K++  IF+GY
Sbjct: 357 QRKKWDLKSEERIFVGY 373


>gb|AAT38797.2| Polyprotein, putative [Solanum demissum]
          Length = 1793

 Score = 59.7 bits (143), Expect(4) = 3e-23
 Identities = 29/80 (36%), Positives = 49/80 (61%)
 Frame = -3

Query: 301 VAERRNRTLVEVIRCLLNDSSLSKIWWGEALSIANYIINYWPNKSINLKIPKEI*RNEKL 122
           V+ER+NRT++E+ RCLL +  +   +  EA++ + Y++N  P K++    P E     K 
Sbjct: 731 VSERKNRTVMEMARCLLLERKIPNQFLAEAINTSVYLLNRLPTKALQDMTPYEAWCGNKP 790

Query: 121 VVSYLKVFGRK*FYHIPKEK 62
            V +L++FG K +Y +PK K
Sbjct: 791 SVHHLRIFGCKCYYRVPKTK 810



 Score = 53.1 bits (126), Expect(4) = 3e-23
 Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = -2

Query: 662 GK*HKLPFSKKEK-RAKRCLELMHTDIFGPLLI*TNHDYYYFATFIDDYLRFFWVYLLKQ 486
           GK  KLPF   +  RA + L+L+HTD+ GP+   +     YF  FIDDY R  WVY ++ 
Sbjct: 609 GKQTKLPFQANQVWRANQKLQLIHTDVCGPIKTDSLSGNKYFLLFIDDYTRMCWVYFIRL 668

Query: 485 KIE 477
           K E
Sbjct: 669 KSE 671



 Score = 32.0 bits (71), Expect(4) = 3e-23
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -1

Query: 486 KNRVLNKFVGYREKVKIEKGEKICKLMRDGGMEYXXXXXXXXXXXXSIQR*LTIPYNPQQ 307
           K+ V + F  ++  V+ +   +I  L  D G E+             I+  LT+PY PQQ
Sbjct: 669 KSEVFDVFKQFKALVENQCNLRIKALRSDNGGEHTSFQFVEFCNSTCIECQLTLPYTPQQ 728

Query: 306 NG 301
           NG
Sbjct: 729 NG 730



 Score = 30.4 bits (67), Expect(4) = 3e-23
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = -2

Query: 74  SKRKKLDNKAKLGIFIGY 21
           +KR KLDNKA  GIF+GY
Sbjct: 809 TKRTKLDNKAHKGIFMGY 826