BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00011155
         (754 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]       264   3e-68
gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum de...   260   4e-67
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   260   4e-67
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   258   1e-66
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   256   7e-66
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   254   3e-65
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola...   253   4e-65
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       253   4e-65
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...   253   5e-65
gb|AAT38699.2| RNA dependent RNA polymerase family protein [Sola...   253   5e-65
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   253   6e-65
ref|XP_006388173.1| hypothetical protein POPTR_0303s002201g, par...   253   6e-65
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   253   6e-65
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu...   251   1e-64
ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutr...   250   4e-64
ref|XP_002315849.2| hypothetical protein POPTR_0010s11560g [Popu...   249   9e-64
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   248   2e-63
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   248   2e-63
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   247   3e-63
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali...   247   3e-63

>emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
          Length = 775

 Score =  264 bits (674), Expect = 3e-68
 Identities = 134/252 (53%), Positives = 177/252 (70%), Gaps = 2/252 (0%)
 Frame = -3

Query: 752  LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSLGIISARHTV 573
            +YFVCWD  LIPP    PMDY   P I L+  VTIE+++E+F NYM+ND LG+I+  H V
Sbjct: 499  IYFVCWDPDLIPPRQVQPMDYTPAPSIQLDHDVTIEEVEEYFTNYMVNDGLGVIANAHVV 558

Query: 572  FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISK 393
            FAD +  MA SD C++LAQLF++AVDFPKTGVPA+IPS L P+EYPDFMEK DK TY S+
Sbjct: 559  FADREPNMAMSDPCIELAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKTTYHSE 618

Query: 392  RVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLL 213
            +VIGKL+R VKD  TQ+ +I++FT++VA ++YD DLEV  ++DYID AF  K+ YD  L 
Sbjct: 619  KVIGKLFREVKDKTTQASSITTFTRDVARRSYDTDLEVDGFEDYIDEAFDYKSEYDKKLG 678

Query: 212  SIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFD--ADVRE 39
            ++M  YGI+ EAE +SG I   SK    +     E +   V+SL++E R+WF   +D+ +
Sbjct: 679  NLMDYYGIKTEAETLSGGIMKASKTFDRRRD--AEAIGVAVRSLRKEARTWFKRRSDIDD 736

Query: 38   LEANEYDLASAW 3
            L A     ASAW
Sbjct: 737  LLAK----ASAW 744


>gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1139

 Score =  260 bits (664), Expect = 4e-67
 Identities = 127/232 (54%), Positives = 170/232 (73%)
 Frame = -3

Query: 752  LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSLGIISARHTV 573
            +YFVCWD+ +IPP    PM+Y   P I L+  VTIE+++E+F NY++NDSLGII+  H V
Sbjct: 831  IYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVV 890

Query: 572  FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISK 393
            FAD + +MA SD C KLA+LF++AVDFPKTGVPA+IPS L P+EYPDFM+K DK TYIS+
Sbjct: 891  FADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTTYISE 950

Query: 392  RVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLL 213
            RVIGKL+R VKD A Q+ +I+ FT++VA ++YD DLEV  ++DYID AF  K  YD+ L 
Sbjct: 951  RVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDVDLEVDGFEDYIDEAFDYKTEYDNKLG 1010

Query: 212  SIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWF 57
            ++M  YGI+ EAEI+SG I   SK    +     E +   V++L++E R+WF
Sbjct: 1011 NLMDYYGIKTEAEILSGGIMKTSKTFDRRKD--AEAISIAVRALRKEARTWF 1060


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score =  260 bits (664), Expect = 4e-67
 Identities = 125/232 (53%), Positives = 171/232 (73%)
 Frame = -3

Query: 752  LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSLGIISARHTV 573
            +YFVCWD+ +IPP    PM+Y   P I L+  VTIE+++E+F NY++NDSLGII+  H V
Sbjct: 806  IYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVV 865

Query: 572  FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISK 393
            FAD + +MA SD C KLA+LF++AVDFPKTGVPA+IPS L P+EYPDFM+K DK +YIS+
Sbjct: 866  FADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTSYISE 925

Query: 392  RVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLL 213
            RVIGKL+R VKD A Q+ +I++FT++VA ++YD D+EV  ++DYID AF  K  YD+ L 
Sbjct: 926  RVIGKLFRKVKDKAPQASSIATFTRDVARRSYDADMEVDGFEDYIDEAFDYKTEYDNKLG 985

Query: 212  SIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWF 57
            ++M  YGI+ EAEI+SG I   SK    +     E +   V++L++E R+WF
Sbjct: 986  NLMDYYGIKTEAEILSGGIMKASKTFDRRKD--AEAISVAVRALRKEARAWF 1035


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score =  258 bits (660), Expect = 1e-66
 Identities = 133/253 (52%), Positives = 179/253 (70%), Gaps = 3/253 (1%)
 Frame = -3

Query: 752  LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSLGIISARHTV 573
            +YFVCWD  L+PP    PMDY   P   L+  VTIE+++E+F NY++NDSLGII+  H V
Sbjct: 809  IYFVCWDPDLVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVV 868

Query: 572  FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISK 393
            FAD + +MA SD C +LAQLF++AVDFPKTGVPA+IPS L P+EYPDFMEK DKPTY S+
Sbjct: 869  FADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSE 928

Query: 392  RVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLL 213
            +VIGKL++ VKD   Q+ +I++FT +VA K+YD D+ V  ++DYID AF  K+ YD+ L 
Sbjct: 929  KVIGKLFQKVKDKTPQASSIANFTMDVARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLG 988

Query: 212  SIMHRYGIRYEAEIVSGNIFSLSK-FHGSKLSDVRELLLTEVKSLQRETRSWFD--ADVR 42
            ++M  YGI+ EAEI+SG I   SK F   K +D    +   V+SL++E R+WF   +D+ 
Sbjct: 989  NLMDYYGIKTEAEILSGGIMKASKTFDRRKDADA---IGVAVRSLRKEARTWFKRRSDID 1045

Query: 41   ELEANEYDLASAW 3
            ++ A     ASAW
Sbjct: 1046 DMLAK----ASAW 1054


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 1119

 Score =  256 bits (653), Expect = 7e-66
 Identities = 132/253 (52%), Positives = 178/253 (70%), Gaps = 3/253 (1%)
 Frame = -3

Query: 752  LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSLGIISARHTV 573
            +YFVCWD  LIPP    PMDY   P I +++ VTIE+++E+F NY++NDSLGII+  HTV
Sbjct: 808  IYFVCWDPELIPPKQIQPMDYTPAPPIEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTV 867

Query: 572  FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISK 393
            FADS  + A S  CL+LA+LF++AVDFPKTGVPA+IP +L  +EYPDFMEK DK TYIS 
Sbjct: 868  FADSKLDKAMSHPCLQLAKLFSIAVDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTYISH 927

Query: 392  RVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLL 213
             VIG+L+R VKD A    +I+SFT++VA K YD D+EV  ++DY++ AF  K  YD  L 
Sbjct: 928  NVIGQLFREVKDIAPHDSSIASFTRQVATKCYDPDMEVDGFEDYLEDAFYHKGNYDYKLG 987

Query: 212  SIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWF---DADVR 42
            +++  YGI+ EAEI+SG+I +LSK   +K  D  + +   VKSL++E R+WF   D  + 
Sbjct: 988  NMLDYYGIKTEAEILSGSIMTLSKSF-TKRRDA-DAINVAVKSLRKEARAWFNEKDTGID 1045

Query: 41   ELEANEYDLASAW 3
              + + Y  ASAW
Sbjct: 1046 SGDDDVYAKASAW 1058


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  254 bits (648), Expect = 3e-65
 Identities = 131/251 (52%), Positives = 175/251 (69%), Gaps = 1/251 (0%)
 Frame = -3

Query: 752  LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSLGIISARHTV 573
            +YFVCWD+ LIPP  D PMDY     + L+  V IED++E+F NY++NDSLGII+  HTV
Sbjct: 823  IYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTV 882

Query: 572  FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISK 393
            FAD +   ARS+ CL+LA+ F++AVDFPKTGVPA+IP  L  +EYPDFMEK DKPTY S+
Sbjct: 883  FADREPHKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQ 942

Query: 392  RVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLL 213
             VIGKL+RAVKD A  +  I  FTKEVA ++YD D+EV  ++D+ID A   K  YD  L 
Sbjct: 943  NVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLG 1002

Query: 212  SIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWF-DADVREL 36
            ++M  YGI+ EAEI++G+I  +SK   +K  D  E +   V++L++E R+WF +    + 
Sbjct: 1003 NLMDYYGIKTEAEILTGSIMKMSKSF-TKRRDA-EAIGMAVRALRKEARAWFKEKSGSDT 1060

Query: 35   EANEYDLASAW 3
            E + Y  ASAW
Sbjct: 1061 EDDAYAKASAW 1071


>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  253 bits (647), Expect = 4e-65
 Identities = 127/233 (54%), Positives = 168/233 (72%), Gaps = 1/233 (0%)
 Frame = -3

Query: 752  LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSLGIISARHTV 573
            +YFVCWD+ +IPP    PM+Y   P I L+  VTIE+++E+F NY++NDSLGIIS  H V
Sbjct: 654  IYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIISNAHVV 713

Query: 572  FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEK-EDKPTYIS 396
            FAD + +MA SD C KLA+L ++AVDFPKTGVPA+IPS L P+EYPDFM+K  DK TYIS
Sbjct: 714  FADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYIS 773

Query: 395  KRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSL 216
            +RVIGKL+R VKD A Q+ + + FT++VA ++YD DLEV  ++DYID AF  K  YDS L
Sbjct: 774  ERVIGKLFRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDSKL 833

Query: 215  LSIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWF 57
             ++M  YGI+ EAEI+SG I   SK    +     E +   V++L++E R+WF
Sbjct: 834  GNLMDYYGIKTEAEILSGGIMKTSKTFDRRKD--AEAISIAVRALRKEARTWF 884


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  253 bits (647), Expect = 4e-65
 Identities = 129/252 (51%), Positives = 176/252 (69%), Gaps = 2/252 (0%)
 Frame = -3

Query: 752  LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSLGIISARHTV 573
            +YFVCWD  LIPP     MDY   P   L+  VTIE+++E+F NY++NDSLGII+  H V
Sbjct: 808  IYFVCWDPDLIPPRQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGIIANAHVV 867

Query: 572  FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISK 393
            FAD + +MA SD C +LAQLF++AVDFPKTGVPA+IPS L P+EYPDFMEK DKPTY S+
Sbjct: 868  FADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSE 927

Query: 392  RVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLL 213
            +VIGKL++ VK+   Q+ +I++FT++VA K+YD D+ V  ++DYID AF  K+ YD+ L 
Sbjct: 928  KVIGKLFQKVKNKTPQASSIATFTRDVARKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLG 987

Query: 212  SIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFD--ADVRE 39
            ++M  YGI+ EAEI+SG I   SK    +     E +   V+ L++E R+WF   +D+ +
Sbjct: 988  NLMDYYGIKTEAEILSGGIMKASKTFDRRKD--AEAIGVAVRCLRKEARAWFKRRSDIDD 1045

Query: 38   LEANEYDLASAW 3
            + A     ASAW
Sbjct: 1046 MLAK----ASAW 1053


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score =  253 bits (646), Expect = 5e-65
 Identities = 126/233 (54%), Positives = 169/233 (72%), Gaps = 1/233 (0%)
 Frame = -3

Query: 752  LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSLGIISARHTV 573
            +YFVCWD+ +IPP     M+Y   P I L+  VTIE+++E+F NY++NDSLGII+  H V
Sbjct: 806  IYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHNVTIEEVEEYFTNYIVNDSLGIIANAHVV 865

Query: 572  FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEK-EDKPTYIS 396
            FAD + +MA SD C KLA+LF++AVDFPKTGVPA+IPS L P+EYPDFM+K  DK TYIS
Sbjct: 866  FADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYIS 925

Query: 395  KRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSL 216
            +RVIGKL+R VKD A Q+ +I+ FT++VA ++YD DLEV  ++DYID AF  K  YD+ L
Sbjct: 926  ERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKL 985

Query: 215  LSIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWF 57
             ++M  YGI+ EAEI+SG I   SK    +     E +   V++L++E R+WF
Sbjct: 986  GNLMDYYGIKTEAEILSGGIMKASKTFDRRKD--AEAISVAVRALRKEARTWF 1036


>gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  253 bits (646), Expect = 5e-65
 Identities = 126/233 (54%), Positives = 169/233 (72%), Gaps = 1/233 (0%)
 Frame = -3

Query: 752  LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSLGIISARHTV 573
            +YFVCWD+ +IPP     M+Y   P I L+  VTIE+++E+F NY++NDSLGII+  H V
Sbjct: 654  IYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHNVTIEEVEEYFTNYIVNDSLGIIANAHVV 713

Query: 572  FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEK-EDKPTYIS 396
            FAD + +MA SD C KLA+LF++AVDFPKTGVPA+IPS L P+EYPDFM+K  DK TYIS
Sbjct: 714  FADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYIS 773

Query: 395  KRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSL 216
            +RVIGKL+R VKD A Q+ +I+ FT++VA ++YD DLEV  ++DYID AF  K  YD+ L
Sbjct: 774  ERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKL 833

Query: 215  LSIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWF 57
             ++M  YGI+ EAEI+SG I   SK    +     E +   V++L++E R+WF
Sbjct: 834  GNLMDYYGIKTEAEILSGGIMKASKTFDRRKD--AEAISVAVRALRKEARTWF 884


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  253 bits (645), Expect = 6e-65
 Identities = 126/233 (54%), Positives = 168/233 (72%), Gaps = 1/233 (0%)
 Frame = -3

Query: 752  LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSLGIISARHTV 573
            +YFVCWD+ +IPP     M+Y   P I L+  VTIE+++E+F NY++NDSLGII+  H V
Sbjct: 806  IYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVV 865

Query: 572  FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEK-EDKPTYIS 396
            FAD + +MA SD C KLA+LF++AVDFPKTGVPA+IPS L P+EYPDFM+K  DK TYIS
Sbjct: 866  FADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYIS 925

Query: 395  KRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSL 216
            +RVIGKLYR VKD A Q+ + + FT++VA ++YD DLEV  ++DYID AF  K  YD+ L
Sbjct: 926  ERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKL 985

Query: 215  LSIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWF 57
             ++M  YGI+ EAEI+SG I   SK    +     E +   V++L++E R+WF
Sbjct: 986  GNLMDYYGIKTEAEILSGGIMKTSKTFDRRKD--AEAISIAVRALRKEARTWF 1036


>ref|XP_006388173.1| hypothetical protein POPTR_0303s002201g, partial [Populus
            trichocarpa] gi|550309641|gb|ERP47087.1| hypothetical
            protein POPTR_0303s002201g, partial [Populus trichocarpa]
          Length = 642

 Score =  253 bits (645), Expect = 6e-65
 Identities = 134/253 (52%), Positives = 176/253 (69%), Gaps = 3/253 (1%)
 Frame = -3

Query: 752  LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSLGIISARHTV 573
            +YFVCWD  LIPP    PMDY AP    L+  VTIE++QE+FA+Y+LNDSLGII   H V
Sbjct: 333  VYFVCWDTDLIPPQKFPPMDYTAPQTTILDHDVTIEEVQEYFADYLLNDSLGIICTAHVV 392

Query: 572  FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEK-EDK-PTYI 399
            FADS+ +MARS+ C++LAQL ++AVDFPKTGVPAKIP +L  +EYPDFMEK  DK  TY+
Sbjct: 393  FADSEPDMARSEKCIELAQLSSIAVDFPKTGVPAKIPKELRVKEYPDFMEKPADKCTTYV 452

Query: 398  SKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSS 219
            S+RV+GKL+RAVKD A  +  I SFTKEVA ++YD D+EV  +KDYI+ AF  K+ YD+ 
Sbjct: 453  SQRVLGKLFRAVKDIAPDTSPIKSFTKEVATRSYDPDMEVDGFKDYINEAFYYKSEYDNK 512

Query: 218  LLSIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRE 39
            L ++M  YGI+ EAEI+   I  + +    K     E +   V SL+++ R+WF+    E
Sbjct: 513  LGNMMDYYGIKTEAEIIGSCIMRMGRSFDKKRD--LEGINFSVSSLRKQARAWFNESGSE 570

Query: 38   LEANE-YDLASAW 3
               ++ Y  ASAW
Sbjct: 571  ESPDDVYRKASAW 583


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max]
          Length = 1125

 Score =  253 bits (645), Expect = 6e-65
 Identities = 131/254 (51%), Positives = 172/254 (67%), Gaps = 4/254 (1%)
 Frame = -3

Query: 752  LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSLGIISARHTV 573
            +YFVCWD  LIP     PMDY AP  + L+  V IE+++E+FANY++NDSLGII+  HTV
Sbjct: 816  IYFVCWDHELIPSRPIDPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTV 875

Query: 572  FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISK 393
            FAD +   A SD C+KLA+LF+ AVDFPKTGVPA IP +L  +EYPDFMEK DKPTY S 
Sbjct: 876  FADKEHLKAMSDQCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSH 935

Query: 392  RVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLL 213
             VIGKL+R VK+ +T + +I+SFTK VA  +YD ++EV  + DY+D AF  K  YD  L 
Sbjct: 936  NVIGKLFREVKEISTSAGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLG 995

Query: 212  SIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFD----ADV 45
            ++M  YGI+ EAEI+ GNI  +SK    +     E +   V+SL++E R+WF+     DV
Sbjct: 996  NLMDYYGIKTEAEILGGNIMKMSKSFNKRRD--AEAINMAVRSLRKEARAWFNENSSGDV 1053

Query: 44   RELEANEYDLASAW 3
                ++ Y  ASAW
Sbjct: 1054 DSGSSDVYAKASAW 1067


>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score =  251 bits (642), Expect = 1e-64
 Identities = 126/233 (54%), Positives = 167/233 (71%), Gaps = 1/233 (0%)
 Frame = -3

Query: 752  LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSLGIISARHTV 573
            +YFVCWD+ +IPP    PM+Y   P I L+  VTIE+++E+F NY++NDSLGIIS  H V
Sbjct: 805  IYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIISNAHVV 864

Query: 572  FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEK-EDKPTYIS 396
            FAD + +MA SD C KLA+L ++AVDFPKTGVPA+IPS   P+EYPDFM+K  DK TYIS
Sbjct: 865  FADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPSQWRPKEYPDFMDKPPDKTTYIS 924

Query: 395  KRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSL 216
            +RVIGKLYR VKD A Q+ + + FT++VA ++YD DLEV  ++DYID AF  K  YD+ L
Sbjct: 925  ERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKL 984

Query: 215  LSIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWF 57
             ++M  YGI+ EAEI+SG I   SK    +     E +   V++L++E R+WF
Sbjct: 985  GNLMDYYGIKTEAEILSGGIMKTSKTFDRRKD--AEAISIAVRALRKEARTWF 1035


>ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutrema salsugineum]
            gi|557094740|gb|ESQ35322.1| hypothetical protein
            EUTSA_v10006629mg [Eutrema salsugineum]
          Length = 1108

 Score =  250 bits (638), Expect = 4e-64
 Identities = 128/250 (51%), Positives = 170/250 (68%)
 Frame = -3

Query: 752  LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSLGIISARHTV 573
            +YFVCWD  LIPP+   PMDY   P   L+  VTIE+I+E+F NY++NDSLGII+  HT 
Sbjct: 801  IYFVCWDPELIPPETSEPMDYTPEPAQILDHDVTIEEIEEYFTNYIVNDSLGIIANAHTA 860

Query: 572  FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISK 393
            FAD +   A SD C++LA+ F++AVDFPKTGV A+IP  L  +EYPDFMEK DKPTY SK
Sbjct: 861  FADKEPLKAFSDPCIELARKFSIAVDFPKTGVAAEIPQHLYVKEYPDFMEKPDKPTYESK 920

Query: 392  RVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLL 213
             VIGKL+R VK+ A   ++I SFT +VA K YD+D+EV  +++YID AF  K  YD  L 
Sbjct: 921  NVIGKLFREVKERAPPLISIKSFTLDVASKTYDQDMEVYGFEEYIDEAFYHKGNYDYKLG 980

Query: 212  SIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELE 33
            ++M  YGI+ EAE++SG I  +SK    +     E +   V+SL++E  SWF+A  +E +
Sbjct: 981  NLMDYYGIKTEAEVLSGGIMRMSKSFTKRRDG--ESIGRAVRSLRKEALSWFNAAEKEED 1038

Query: 32   ANEYDLASAW 3
             +    ASAW
Sbjct: 1039 FDVSAKASAW 1048


>ref|XP_002315849.2| hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
            gi|550329580|gb|EEF02020.2| hypothetical protein
            POPTR_0010s11560g [Populus trichocarpa]
          Length = 1119

 Score =  249 bits (635), Expect = 9e-64
 Identities = 128/253 (50%), Positives = 175/253 (69%), Gaps = 3/253 (1%)
 Frame = -3

Query: 752  LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSLGIISARHTV 573
            +YFVCWD  LIPP    PMDYAAP    L+  VTIE++QE+F +Y+LND+LGII + H V
Sbjct: 814  VYFVCWDTDLIPPQKFPPMDYAAPQTTILDHDVTIEEVQEYFTDYLLNDNLGIICSAHVV 873

Query: 572  FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKE--DKPTYI 399
            FADS+ +MARS+ C++LAQL ++AVDFPKTGVPAKIP +L  +EYPDFMEK      TY+
Sbjct: 874  FADSEPDMARSEKCIELAQLSSIAVDFPKTGVPAKIPKELRVKEYPDFMEKAAYKHTTYV 933

Query: 398  SKRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSS 219
            S+RV+GKL+RAV+D A  +  +  FTKE A ++YD D+EV  +KDYI+ AF  K+ YD+ 
Sbjct: 934  SQRVLGKLFRAVRDIAPDTSPVRPFTKEAAKRSYDPDMEVDGFKDYINEAFYYKSEYDNK 993

Query: 218  LLSIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWF-DADVR 42
            L ++M  YGI+ EAEI+ G I  + +    K     E +   V SL+++ R+WF ++  +
Sbjct: 994  LGNMMDYYGIKTEAEIIGGCIMRMGRSFDKKKD--LEGINFSVSSLRKQARAWFNESGSK 1051

Query: 41   ELEANEYDLASAW 3
            E   + Y  ASAW
Sbjct: 1052 ESPDDVYPKASAW 1064


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
            tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
            tuberosum]
          Length = 1115

 Score =  248 bits (632), Expect = 2e-63
 Identities = 124/233 (53%), Positives = 166/233 (71%), Gaps = 1/233 (0%)
 Frame = -3

Query: 752  LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSLGIISARHTV 573
            +YFVCWD+ +IPP     M+Y   P I L+  VTIE+++E+F NY++NDSLGII+  H V
Sbjct: 806  IYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVV 865

Query: 572  FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEK-EDKPTYIS 396
            FAD + +MA SD C KLA+L ++AVDFPKTGVPA+IP  L P+EYPDFM+K  DK TYIS
Sbjct: 866  FADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPPQLRPKEYPDFMDKPPDKTTYIS 925

Query: 395  KRVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSL 216
            +RVIGKLYR VKD A Q+ + + FT++VA ++YD DLEV  ++DYID AF  K  YD+ L
Sbjct: 926  ERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKL 985

Query: 215  LSIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWF 57
             ++M  YGI+ EAEI+SG I   SK    +     E +   V++L++E R+WF
Sbjct: 986  GNLMDYYGIKTEAEILSGGIMKTSKTFDRRKD--AEAISIAVRALRKEARTWF 1036


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  248 bits (632), Expect = 2e-63
 Identities = 126/253 (49%), Positives = 173/253 (68%), Gaps = 3/253 (1%)
 Frame = -3

Query: 752  LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSLGIISARHTV 573
            +YFVCWD  LIP     PMDY   P + L+  VTIE+++E+F NY++NDSLG+I+  HT 
Sbjct: 819  IYFVCWDPELIPSQQISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTA 878

Query: 572  FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISK 393
             AD +   A S+ C++LA+ F++AVDFPKTGVPA+IPS+L  REYPDFMEK DKP+Y S+
Sbjct: 879  HADKESLKAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESR 938

Query: 392  RVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLL 213
             VIGKL+R VKD A ++ +I SFT +VA + YD D+EV  ++DYID AF  K+ YD  L 
Sbjct: 939  NVIGKLFREVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLG 998

Query: 212  SIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELE 33
            ++M  YGI+ EAE++SG+   +SK    K     E +   V+SL++E RSWF+     L+
Sbjct: 999  NLMEYYGIKTEAELLSGSFMKMSKSFTKKRD--AEAIGMAVRSLKKEARSWFNEKGSGLD 1056

Query: 32   ANEYDL---ASAW 3
            +   D+   ASAW
Sbjct: 1057 SQADDVDAKASAW 1069


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score =  247 bits (631), Expect = 3e-63
 Identities = 131/250 (52%), Positives = 173/250 (69%)
 Frame = -3

Query: 752  LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSLGIISARHTV 573
            +YFVCWD+ LIPP    PMDY   P   L+  VTIE+++E+FANY++NDSLGII+  HT 
Sbjct: 803  IYFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTA 862

Query: 572  FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISK 393
            FAD +   A SD C++LA+ F++AVDFPKTGV A+IP  L  +EYPDFMEK DKPTY SK
Sbjct: 863  FADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLYVKEYPDFMEKPDKPTYESK 922

Query: 392  RVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLL 213
             VIGKL+R VK+ A   ++I SFT +VA K+YD+D+EV  +++Y+D AF  K  YD  L 
Sbjct: 923  NVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLG 982

Query: 212  SIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELE 33
            ++M  YGI+ EAEI+SG I  +SK   +K  D  E +   V++L++ET S F+A   E  
Sbjct: 983  NLMDYYGIKTEAEILSGGIMRMSKSF-TKRRDA-ESIGRAVRALRKETLSLFNATEEE-- 1038

Query: 32   ANEYDLASAW 3
             NE   ASAW
Sbjct: 1039 -NESAKASAW 1047


>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  247 bits (630), Expect = 3e-63
 Identities = 131/250 (52%), Positives = 172/250 (68%)
 Frame = -3

Query: 752  LYFVCWDESLIPPDVDMPMDYAAPPQISLNRPVTIEDIQEFFANYMLNDSLGIISARHTV 573
            +YFVCWD+ L+PP    PMDY   P   L+  VTIE+++E+FANY++NDSLGII+  HT 
Sbjct: 802  IYFVCWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTA 861

Query: 572  FADSDQEMARSDNCLKLAQLFTLAVDFPKTGVPAKIPSDLVPREYPDFMEKEDKPTYISK 393
            FAD +   A SD C++LA+ F+ AVDFPKTGV A IP  L  +EYPDFMEK DKPTY SK
Sbjct: 862  FADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESK 921

Query: 392  RVIGKLYRAVKDHATQSLTISSFTKEVAYKAYDRDLEVGAYKDYIDAAFVCKNLYDSSLL 213
             VIGKL+R VK+ A   ++I SFT +VA K+YD+D+EV  +++Y+D AF  K  YD  L 
Sbjct: 922  NVIGKLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLG 981

Query: 212  SIMHRYGIRYEAEIVSGNIFSLSKFHGSKLSDVRELLLTEVKSLQRETRSWFDADVRELE 33
            ++M  YGI+ EAEI+SG I  +SK   +K  D  E +   V++L++ET S F+A   E E
Sbjct: 982  NLMDYYGIKTEAEILSGGIMRMSKSF-TKRRDA-ESIGRAVRALRKETLSLFNAS--EEE 1037

Query: 32   ANEYDLASAW 3
             NE   ASAW
Sbjct: 1038 ENESAKASAW 1047