BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00010605
         (1024 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28908.3| unnamed protein product [Vitis vinifera]              155   2e-35
ref|XP_006366006.1| PREDICTED: pentatricopeptide repeat-containi...   153   9e-35
ref|XP_004513160.1| PREDICTED: pentatricopeptide repeat-containi...   151   5e-34
ref|XP_006371589.1| pentatricopeptide repeat-containing family p...   150   6e-34
gb|EOY09328.1| Pentatricopeptide repeat (PPR-like) superfamily p...   150   1e-33
gb|EMJ18185.1| hypothetical protein PRUPE_ppa002596mg [Prunus pe...   149   1e-33
ref|XP_002329409.1| predicted protein [Populus trichocarpa]           149   1e-33
ref|XP_006850819.1| hypothetical protein AMTR_s00025p00124790 [A...   146   1e-32
ref|XP_004306013.1| PREDICTED: pentatricopeptide repeat-containi...   145   2e-32
ref|XP_006418224.1| hypothetical protein EUTSA_v10007014mg [Eutr...   145   3e-32
ref|XP_002892169.1| pentatricopeptide repeat-containing protein ...   145   3e-32
ref|XP_004248470.1| PREDICTED: pentatricopeptide repeat-containi...   145   3e-32
gb|ESW05301.1| hypothetical protein PHAVU_011G168600g [Phaseolus...   143   1e-31
ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containi...   143   1e-31
ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containi...   143   1e-31
ref|XP_006306944.1| hypothetical protein CARUB_v10008524mg [Caps...   142   3e-31
ref|XP_006447324.1| hypothetical protein CICLE_v10014552mg [Citr...   140   6e-31
ref|NP_171855.1| pentatricopeptide repeat-containing protein [Ar...   140   6e-31
ref|XP_002532772.1| pentatricopeptide repeat-containing protein,...   140   6e-31
dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]           140   6e-31

>emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  155 bits (392), Expect = 2e-35
 Identities = 109/344 (31%), Positives = 177/344 (51%), Gaps = 5/344 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDMEKK-WWPDQVSYVTLMRGFYSEGKYDMTLRLF 178
            DVVSYNTMI+G C++     A+  F DMEK+   PD+++Y+TL++  YSEG +D  L L+
Sbjct: 259  DVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLY 318

Query: 179  SEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEI 358
             EM  R L+I P AY  VI   C +G  + G  + + M ++GCK  + IY  LI+ + + 
Sbjct: 319  QEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKN 378

Query: 359  CDHDKALEILRHLNCFETLKGSQIEKS--TCDKIVNWLCEFGEVELGLDFLDHFK--ELG 526
             + ++A+      N FE +KG   E    T   IVN LC+ G ++  +++ +  K  E+ 
Sbjct: 379  GNVNEAI------NLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVA 432

Query: 527  IDLSQYCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQ 706
            ++   Y  LI G    G+ D+  A +    + E+G   D      +ID  +  G++E A 
Sbjct: 433  VNAMFYSSLIDGLGKAGRVDE--AEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEAL 490

Query: 707  NVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGL 886
             +  +  + G + +  +Y+ +I GL K     EA +++D M   G  P  A   ++  GL
Sbjct: 491  VLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVGL 550

Query: 887  SKVGKIERAMEISDYMKEQCFDLTLQSYIAIIEGLLKAGNEEMA 1018
               GK+ RA +I D +      +   ++  +I  L KAG  E A
Sbjct: 551  CLSGKVARACKILDELAPMGV-IPETAFEDMINVLCKAGRTEQA 593



 Score =  107 bits (267), Expect = 8e-21
 Identities = 91/346 (26%), Positives = 161/346 (46%), Gaps = 6/346 (1%)
 Frame = +2

Query: 5    VVSYNTMIRGLCESRRNDTALSCFRDMEKKWW-PDQVSYVTLMRGFYSEGKYDMTLRLFS 181
            V + N++IR        +  L  +R M++    P   ++  L+ G  +    +   R+F 
Sbjct: 190  VFAANSLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLVNSMFIESAERVFE 249

Query: 182  EMLSRNLKIIPD--AYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVE 355
             M     KI PD  +Y  +I  +C  G   +  E    M +R  +P    YL LI+    
Sbjct: 250  VMECG--KIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYS 307

Query: 356  ICDHDKALEILRHLNCFETLKGSQIEKSTCDKIVNWLCEFGEVELGLDFLDHFKELGI-- 529
              + D  L + + +      +G +I       ++  LC+ G    G    ++  + G   
Sbjct: 308  EGNFDSCLHLYQEME----ERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKA 363

Query: 530  DLSQYCCLILGGFNWGKDDK-NKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQ 706
            +++ Y  LI     +GK+   N+A+ +  R+K +G+  D  T   I++G    G L+ A 
Sbjct: 364  NVAIYTALIDA---YGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAV 420

Query: 707  NVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGL 886
               +  ++  + V+++ YSS+I GL KA    EAE+ F+EM   G   D  C N++I  L
Sbjct: 421  EYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDAL 480

Query: 887  SKVGKIERAMEISDYMKEQCFDLTLQSYIAIIEGLLKAGNEEMAME 1024
            +K GK+E A+ +   M+++  D T+ +Y  +I GL K    E A++
Sbjct: 481  AKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALK 526



 Score = 64.7 bits (156), Expect = 6e-08
 Identities = 38/134 (28%), Positives = 69/134 (51%)
 Frame = +2

Query: 605  ILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQNVVDQFRELGLEVSSLSYSSVIHGLI 784
            I    KEKG+ +       +I  F A G +E    V  + +E G+E S  +++ +++GL+
Sbjct: 177  IFGEFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLV 236

Query: 785  KAESFGEAEQVFDEMQILGHDPDVACCNSVIQGLSKVGKIERAMEISDYMKEQCFDLTLQ 964
             +     AE+VF+ M+     PDV   N++I+G  K G  ++AME    M+++  +    
Sbjct: 237  NSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKI 296

Query: 965  SYIAIIEGLLKAGN 1006
            +Y+ +I+     GN
Sbjct: 297  TYLTLIQACYSEGN 310


>ref|XP_006366006.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
            mitochondrial-like isoform X1 [Solanum tuberosum]
            gi|565401005|ref|XP_006366007.1| PREDICTED:
            pentatricopeptide repeat-containing protein At1g03560,
            mitochondrial-like isoform X2 [Solanum tuberosum]
            gi|565401007|ref|XP_006366008.1| PREDICTED:
            pentatricopeptide repeat-containing protein At1g03560,
            mitochondrial-like isoform X3 [Solanum tuberosum]
            gi|565401009|ref|XP_006366009.1| PREDICTED:
            pentatricopeptide repeat-containing protein At1g03560,
            mitochondrial-like isoform X4 [Solanum tuberosum]
            gi|565401011|ref|XP_006366010.1| PREDICTED:
            pentatricopeptide repeat-containing protein At1g03560,
            mitochondrial-like isoform X5 [Solanum tuberosum]
          Length = 711

 Score =  153 bits (387), Expect = 9e-35
 Identities = 99/314 (31%), Positives = 174/314 (55%), Gaps = 5/314 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDME-KKWWPDQVSYVTLMRGFYSEGKYDMTLRLF 178
            D+V+YNTMI+G C S +   A+  FRDME +K  PD+++Y+TLM+  Y+EG +D  L L+
Sbjct: 312  DIVTYNTMIKGYCRSGKLQKAMEKFRDMEVRKVEPDKITYMTLMQACYAEGNFDSCLGLY 371

Query: 179  SEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEI 358
             EM  ++L I P AY  VI  FC  G+VL G+ + + M+++G +P ++IY  LI+ +++ 
Sbjct: 372  HEMEEKDLDIPPHAYTLVIGGFCKMGKVLEGFTVFENMIKKGIRPNLSIYTALIDSYMKH 431

Query: 359  CDHDKALEILRHLNCFETLK--GSQIEKSTCDKIVNWLCEFGEVELGLDFLDHFKE--LG 526
             + D+A+ +      F+ +K  G + ++ T   IVN LC+   ++  + +L++ K+  + 
Sbjct: 432  GNLDEAMRL------FDRMKNEGFEPDEVTFGVIVNGLCKSERLDEAMQWLEYCKKNNVA 485

Query: 527  IDLSQYCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQ 706
            I+   Y  LI G    G+ D  +A  +   + EKG   D      +ID  +  G+++ A 
Sbjct: 486  INAMFYSSLIDGLGKAGRVD--EARELFEEMAEKGCTRDSYCYNALIDALAKNGKIDEAL 543

Query: 707  NVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGL 886
             +  +  + G + +  +Y+ +I G+ K     EA +++  M   G  P+ A   ++  GL
Sbjct: 544  VLFKRMEDEGCDETVYTYTILISGMFKEHQNEEALKLWHMMIDKGITPNAASFRALSTGL 603

Query: 887  SKVGKIERAMEISD 928
               GK+ RA +I D
Sbjct: 604  CHSGKVARACKILD 617



 Score =  112 bits (281), Expect = 2e-22
 Identities = 91/346 (26%), Positives = 163/346 (47%), Gaps = 5/346 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDMEKKWW-PDQVSYVTLMRGFYSEGKYDMTLRLF 178
            +V + N++IR   E    +  L  +R M++    P   +Y  LM G  +    +   R+F
Sbjct: 242  NVAAVNSLIRSFGELGMVEELLFVWRQMKENGIEPSLYTYNFLMNGLVNSMFIESAERVF 301

Query: 179  SEMLSRNLKIIPD--AYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFV 352
              M S   K+ PD   Y  +I  +C  G++ +  E  + M  R  +P    Y+ L++   
Sbjct: 302  EVMESG--KVNPDIVTYNTMIKGYCRSGKLQKAMEKFRDMEVRKVEPDKITYMTLMQACY 359

Query: 353  EICDHDKALEILRHLNCFETLKGSQIEKSTCDKIVNWLCEFGEVELGLDFLDHFKELGI- 529
               + D  L +   +      K   I       ++   C+ G+V  G    ++  + GI 
Sbjct: 360  AEGNFDSCLGLYHEME----EKDLDIPPHAYTLVIGGFCKMGKVLEGFTVFENMIKKGIR 415

Query: 530  -DLSQYCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQ 706
             +LS Y  LI      G  D+  A+R+  R+K +G+  D+ T   I++G      L+ A 
Sbjct: 416  PNLSIYTALIDSYMKHGNLDE--AMRLFDRMKNEGFEPDEVTFGVIVNGLCKSERLDEAM 473

Query: 707  NVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGL 886
              ++  ++  + ++++ YSS+I GL KA    EA ++F+EM   G   D  C N++I  L
Sbjct: 474  QWLEYCKKNNVAINAMFYSSLIDGLGKAGRVDEARELFEEMAEKGCTRDSYCYNALIDAL 533

Query: 887  SKVGKIERAMEISDYMKEQCFDLTLQSYIAIIEGLLKAGNEEMAME 1024
            +K GKI+ A+ +   M+++  D T+ +Y  +I G+ K    E A++
Sbjct: 534  AKNGKIDEALVLFKRMEDEGCDETVYTYTILISGMFKEHQNEEALK 579



 Score = 63.2 bits (152), Expect = 2e-07
 Identities = 36/134 (26%), Positives = 71/134 (52%)
 Frame = +2

Query: 605  ILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQNVVDQFRELGLEVSSLSYSSVIHGLI 784
            + S  K KG+ ++      +I  F   G +E    V  Q +E G+E S  +Y+ +++GL+
Sbjct: 230  VFSEFKHKGFLMNVAAVNSLIRSFGELGMVEELLFVWRQMKENGIEPSLYTYNFLMNGLV 289

Query: 785  KAESFGEAEQVFDEMQILGHDPDVACCNSVIQGLSKVGKIERAMEISDYMKEQCFDLTLQ 964
             +     AE+VF+ M+    +PD+   N++I+G  + GK+++AME    M+ +  +    
Sbjct: 290  NSMFIESAERVFEVMESGKVNPDIVTYNTMIKGYCRSGKLQKAMEKFRDMEVRKVEPDKI 349

Query: 965  SYIAIIEGLLKAGN 1006
            +Y+ +++     GN
Sbjct: 350  TYMTLMQACYAEGN 363


>ref|XP_004513160.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
            mitochondrial-like [Cicer arietinum]
          Length = 649

 Score =  151 bits (381), Expect = 5e-34
 Identities = 107/342 (31%), Positives = 170/342 (49%), Gaps = 3/342 (0%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDMEK-KWWPDQVSYVTLMRGFYSEGKYDMTLRLF 178
            DVV+YNT+I+G C+  +   A+   R+ME     PD V+Y+T+M+  Y EG +D  L L+
Sbjct: 250  DVVTYNTLIKGYCKVGKTRKAIEMVREMEVINLEPDVVTYLTIMQACYVEGDFDCCLSLY 309

Query: 179  SEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEI 358
             EM  + L++    Y  VIC  C  G+VL  Y L + M+  GCK    +Y  LI+ + + 
Sbjct: 310  HEMEDKGLEVPSHGYSLVICGLCKMGKVLEAYALFENMIRNGCKGNKAVYTALIDCYGKS 369

Query: 359  CDHDKALEILRHLNCFETLKGSQIEKSTCDKIVNWLCEFGEVELGLDFLDHFKELGIDLS 538
             + D AL +L  +     + G + ++ T   IVN LC+ G VE  L +     E GI ++
Sbjct: 370  GNSDGALRLLERMK----MDGIESDEVTYGAIVNGLCKSGRVEEALCYFQFCNENGIVVN 425

Query: 539  Q--YCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQNV 712
               Y  LI G    G+ D+  A ++   +  KG   D      +IDG   CG ++ A  +
Sbjct: 426  AVFYSSLIDGLGKAGRVDE--AEKVFDEMSVKGCPPDSYCYNALIDGLCKCGRIDDALAL 483

Query: 713  VDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGLSK 892
              +    G E +  +++  I  L +     EA +++D M   G  P+VAC  ++  GL  
Sbjct: 484  FKRMECDGCEQTVYTFTIFISELFRERRNEEAMKMWDLMIDKGITPNVACFRALSIGLCL 543

Query: 893  VGKIERAMEISDYMKEQCFDLTLQSYIAIIEGLLKAGNEEMA 1018
             GK+ RA ++ D +      L + +Y  +I  L KAG  + A
Sbjct: 544  SGKVARACKVLDELAPMGVVLEM-AYEDMIGALCKAGRVKEA 584



 Score =  110 bits (275), Expect = 9e-22
 Identities = 86/337 (25%), Positives = 152/337 (45%), Gaps = 1/337 (0%)
 Frame = +2

Query: 17   NTMIRGLCESRRNDTALSCFRDM-EKKWWPDQVSYVTLMRGFYSEGKYDMTLRLFSEMLS 193
            N++I+    +   +  LS +R M E+   P   +Y +L+ G       +   R+F  M  
Sbjct: 185  NSLIKSFGNAGLVEELLSVWRGMNEQNIQPTLFTYNSLLNGLVGSSLVESAERVFDAMKE 244

Query: 194  RNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEICDHDK 373
               K     Y  +I  +C  G+  +  E++++M     +P +  YL +++      D D 
Sbjct: 245  GRTKPDVVTYNTLIKGYCKVGKTRKAIEMVREMEVINLEPDVVTYLTIMQACYVEGDFDC 304

Query: 374  ALEILRHLNCFETLKGSQIEKSTCDKIVNWLCEFGEVELGLDFLDHFKELGIDLSQYCCL 553
             L +   +      KG ++       ++  LC+ G+V       ++    G   ++    
Sbjct: 305  CLSLYHEMED----KGLEVPSHGYSLVICGLCKMGKVLEAYALFENMIRNGCKGNKAVYT 360

Query: 554  ILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQNVVDQFREL 733
             L        + + A+R+L R+K  G   D+ T   I++G    G +E A        E 
Sbjct: 361  ALIDCYGKSGNSDGALRLLERMKMDGIESDEVTYGAIVNGLCKSGRVEEALCYFQFCNEN 420

Query: 734  GLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGLSKVGKIERA 913
            G+ V+++ YSS+I GL KA    EAE+VFDEM + G  PD  C N++I GL K G+I+ A
Sbjct: 421  GIVVNAVFYSSLIDGLGKAGRVDEAEKVFDEMSVKGCPPDSYCYNALIDGLCKCGRIDDA 480

Query: 914  MEISDYMKEQCFDLTLQSYIAIIEGLLKAGNEEMAME 1024
            + +   M+    + T+ ++   I  L +    E AM+
Sbjct: 481  LALFKRMECDGCEQTVYTFTIFISELFRERRNEEAMK 517


>ref|XP_006371589.1| pentatricopeptide repeat-containing family protein [Populus
            trichocarpa] gi|550317468|gb|ERP49386.1|
            pentatricopeptide repeat-containing family protein
            [Populus trichocarpa]
          Length = 659

 Score =  150 bits (380), Expect = 6e-34
 Identities = 95/314 (30%), Positives = 169/314 (53%), Gaps = 5/314 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDME-KKWWPDQVSYVTLMRGFYSEGKYDMTLRLF 178
            DVV+YNTMI+G C+  +   A   FRDME +   PD+++Y+TL++  Y+EG +D+ L L+
Sbjct: 260  DVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLY 319

Query: 179  SEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEI 358
             EM    L+I P AY  VI   C EG+ + GY + +KM+++GCK  + IY  LI+   + 
Sbjct: 320  HEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKC 379

Query: 359  CDHDKALEILRHLNCFETLKGSQIEKS--TCDKIVNWLCEFGEVELGLDFLDHFKELGID 532
             +  +A+ +      FE +K   +E    T   +VN +C+ G ++  +++L+  +  G+ 
Sbjct: 380  GNMGEAMLL------FERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVA 433

Query: 533  LSQ--YCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQ 706
            ++   Y  LI G    G+   ++A ++   + +KG   D      +ID  + CG+++ A 
Sbjct: 434  VNAMLYSSLIDGLGKAGR--VHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKIDEAL 491

Query: 707  NVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGL 886
                +  + G + +  +Y+ +I+GL +     EA +++D M   G  P  A   ++  GL
Sbjct: 492  AFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKGITPTAAAFRALSIGL 551

Query: 887  SKVGKIERAMEISD 928
               GK+ RA ++ D
Sbjct: 552  CLSGKVARACKLLD 565



 Score =  106 bits (265), Expect = 1e-20
 Identities = 89/346 (25%), Positives = 160/346 (46%), Gaps = 5/346 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDMEKKWW-PDQVSYVTLMRGFYSEGKYDMTLRLF 178
            +V + N++I+        +  L  +R M++    P   +Y  L+ G  +    +   R+ 
Sbjct: 190  NVSAANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGLVNSVFIESAERVL 249

Query: 179  SEMLSRNLKIIPDA--YEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFV 352
              M   N KI PD   Y  +I  +C  G+  + +E  + M  R   P    Y+ LI+   
Sbjct: 250  EVM--ENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDKITYMTLIQACY 307

Query: 353  EICDHDKALEILRHLNCFETLKGSQIEKSTCDKIVNWLCEFGEVELGLDFLDHFKELG-- 526
               D D  L +   ++      G +I       ++  LC+ G+   G    +   + G  
Sbjct: 308  AEGDFDLCLSLYHEMD----ENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCK 363

Query: 527  IDLSQYCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQ 706
            ++++ Y  LI      G  +  +A+ +  R+K++G   D  T   +++     G L+ A 
Sbjct: 364  VNVAIYTALIDSNAKCG--NMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAM 421

Query: 707  NVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGL 886
              ++  R  G+ V+++ YSS+I GL KA    EAE++F+EM   G  PD  C N++I  L
Sbjct: 422  EYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDAL 481

Query: 887  SKVGKIERAMEISDYMKEQCFDLTLQSYIAIIEGLLKAGNEEMAME 1024
            +K GKI+ A+     M+++  D T+ +Y  +I GL +    E A++
Sbjct: 482  AKCGKIDEALAFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEALK 527


>gb|EOY09328.1| Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma
            cacao]
          Length = 654

 Score =  150 bits (378), Expect = 1e-33
 Identities = 96/314 (30%), Positives = 166/314 (52%), Gaps = 5/314 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDMEK-KWWPDQVSYVTLMRGFYSEGKYDMTLRLF 178
            DVVSYNTMI+G C++ +   A+   R ME     PD+++Y+TLM+  YSEG +D  L L+
Sbjct: 255  DVVSYNTMIKGYCKAGKTHKAMEKIRAMETINLEPDKITYMTLMQACYSEGNFDSCLGLY 314

Query: 179  SEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEI 358
             EM+ +  ++ P AY  +I   C +G+ + GY + + M+  G K  + IY  +I+ F + 
Sbjct: 315  HEMVEKRCEVPPHAYSLIIGGLCKDGKCIEGYAVFENMIRSGLKANVVIYTTVIDAFAKC 374

Query: 359  CDHDKALEILRHLNCFETLK--GSQIEKSTCDKIVNWLCEFGEVELGLDFLDHFK--ELG 526
               + AL++      F+T+K  G + ++ +   IVN LC+ G ++  +++L   +  E+ 
Sbjct: 375  GRMEDALKL------FQTMKTDGLEPDEVSYGAIVNGLCKSGRLDEAMEYLRFCRANEVA 428

Query: 527  IDLSQYCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQ 706
            I+   YC LI G    G+ D  +A ++   + EK    D      +ID  + CG +  A 
Sbjct: 429  INAMFYCSLIDGLGKAGRVD--EAQKLFEEMVEKDCPRDSYCYNALIDALAKCGRVNDAL 486

Query: 707  NVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGL 886
             + ++  + G + +  +Y+ +I GL +     EA +++D M   G  P  A   ++  GL
Sbjct: 487  TLFNRMEDEGCDQTVYTYTILISGLFREHKNEEAMKLWDMMIDKGITPTAASFRALSIGL 546

Query: 887  SKVGKIERAMEISD 928
               GK+ RA +I D
Sbjct: 547  CLSGKVTRACKILD 560



 Score = 89.0 bits (219), Expect = 3e-15
 Identities = 81/339 (23%), Positives = 148/339 (43%), Gaps = 1/339 (0%)
 Frame = +2

Query: 11   SYNTMIRGLCESRRNDTALSCFRDMEK-KWWPDQVSYVTLMRGFYSEGKYDMTLRLFSEM 187
            ++N ++ GL  S   ++A   F+ ME  K  PD VSY T+++G+   GK    +     M
Sbjct: 223  TFNLLLNGLVNSMFIESAEQVFKVMENSKIRPDVVSYNTMIKGYCKAGKTHKAMEKIRAM 282

Query: 188  LSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEICDH 367
             + NL+     Y  ++ +   EG       L  +M+E+ C+     Y  +I G   +C  
Sbjct: 283  ETINLEPDKITYMTLMQACYSEGNFDSCLGLYHEMVEKRCEVPPHAYSLIIGG---LCKD 339

Query: 368  DKALEILRHLNCFETLKGSQIEKSTCDKIVNWLCEFGEVELGLDFLDHFKELGIDLSQYC 547
             K +E       FE +  S ++ +              V +    +D F + G       
Sbjct: 340  GKCIE---GYAVFENMIRSGLKAN--------------VVIYTTVIDAFAKCG------- 375

Query: 548  CLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQNVVDQFR 727
                            A+++   +K  G   D+ +   I++G    G L+ A   +   R
Sbjct: 376  ------------RMEDALKLFQTMKTDGLEPDEVSYGAIVNGLCKSGRLDEAMEYLRFCR 423

Query: 728  ELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGLSKVGKIE 907
               + ++++ Y S+I GL KA    EA+++F+EM       D  C N++I  L+K G++ 
Sbjct: 424  ANEVAINAMFYCSLIDGLGKAGRVDEAQKLFEEMVEKDCPRDSYCYNALIDALAKCGRVN 483

Query: 908  RAMEISDYMKEQCFDLTLQSYIAIIEGLLKAGNEEMAME 1024
             A+ + + M+++  D T+ +Y  +I GL +    E AM+
Sbjct: 484  DALTLFNRMEDEGCDQTVYTYTILISGLFREHKNEEAMK 522


>gb|EMJ18185.1| hypothetical protein PRUPE_ppa002596mg [Prunus persica]
          Length = 654

 Score =  149 bits (377), Expect = 1e-33
 Identities = 99/314 (31%), Positives = 167/314 (53%), Gaps = 5/314 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDME-KKWWPDQVSYVTLMRGFYSEGKYDMTLRLF 178
            DVV+YNTMI+G C++ +   A+  FR ME +   PD+++Y+TL++G YSEG +D+ L L+
Sbjct: 255  DVVTYNTMIKGYCKAGKTQKAMEKFRAMEGRNVEPDKITYMTLIQGCYSEGDFDLCLGLY 314

Query: 179  SEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEI 358
             EM  + L+I P AY  VI   C  G+ + GY + + M+++GCK  +  Y  LI+ + + 
Sbjct: 315  QEMEEKGLEIPPHAYSLVINGLCKGGKCMEGYAVFEDMIQKGCKANVANYTALIDSYAKC 374

Query: 359  CDHDKALEILRHLNCFETLK--GSQIEKSTCDKIVNWLCEFGEVELGLDFLDHFKELG-- 526
               + A+++      F+ +K  G + +  T   +VN LC+ G VE  +++    +  G  
Sbjct: 375  GSIEGAMKL------FDRMKNDGLKPDVVTYGVVVNGLCKSGRVEEAMEYFQFCEGSGMA 428

Query: 527  IDLSQYCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQ 706
            ++   Y  LI G    G+ D  +A R+  ++ EKG   D      +ID  +  G+ + A 
Sbjct: 429  VNAMLYSSLIEGLGKAGRLD--EAERLFEKMIEKGCPQDSYCYNALIDALAKGGKTDEAL 486

Query: 707  NVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGL 886
             +  +  E G + +  +Y+ +I GL K     EA +++D M   G  P  A   ++  GL
Sbjct: 487  ALFKKMEEEGCDQTVYTYTILISGLFKEHKNEEALKLWDMMIDQGITPTAASFRALSIGL 546

Query: 887  SKVGKIERAMEISD 928
               GK+ RA +I D
Sbjct: 547  CLSGKVARACKILD 560



 Score =  109 bits (273), Expect = 2e-21
 Identities = 85/312 (27%), Positives = 143/312 (45%), Gaps = 4/312 (1%)
 Frame = +2

Query: 101  PDQVSYVTLMRGFYSEGKYDMTLRLFSEMLSRNLKIIPDA--YEAVICSFCIEGEVLRGY 274
            P   +Y  L+ G  +    +   R+F  M     KI+PD   Y  +I  +C  G+  +  
Sbjct: 219  PSLYTYNFLVNGLVNSMFIESAERVFEVM--EGGKIVPDVVTYNTMIKGYCKAGKTQKAM 276

Query: 275  ELLQKMLERGCKPTMTIYLFLIEGFVEICDHDKALEILRHLNCFETLKGSQIEKSTCDKI 454
            E  + M  R  +P    Y+ LI+G     D D  L + + +      KG +I       +
Sbjct: 277  EKFRAMEGRNVEPDKITYMTLIQGCYSEGDFDLCLGLYQEME----EKGLEIPPHAYSLV 332

Query: 455  VNWLCEFGEVELGLDFLDHFKELGI--DLSQYCCLILGGFNWGKDDKNKAVRILSRIKEK 628
            +N LC+ G+   G    +   + G   +++ Y  LI      G  +   A+++  R+K  
Sbjct: 333  INGLCKGGKCMEGYAVFEDMIQKGCKANVANYTALIDSYAKCGSIEG--AMKLFDRMKND 390

Query: 629  GYFVDKDTCFKIIDGFSACGELEMAQNVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEA 808
            G   D  T   +++G    G +E A          G+ V+++ YSS+I GL KA    EA
Sbjct: 391  GLKPDVVTYGVVVNGLCKSGRVEEAMEYFQFCEGSGMAVNAMLYSSLIEGLGKAGRLDEA 450

Query: 809  EQVFDEMQILGHDPDVACCNSVIQGLSKVGKIERAMEISDYMKEQCFDLTLQSYIAIIEG 988
            E++F++M   G   D  C N++I  L+K GK + A+ +   M+E+  D T+ +Y  +I G
Sbjct: 451  ERLFEKMIEKGCPQDSYCYNALIDALAKGGKTDEALALFKKMEEEGCDQTVYTYTILISG 510

Query: 989  LLKAGNEEMAME 1024
            L K    E A++
Sbjct: 511  LFKEHKNEEALK 522



 Score = 94.7 bits (234), Expect = 5e-17
 Identities = 82/327 (25%), Positives = 148/327 (45%), Gaps = 6/327 (1%)
 Frame = +2

Query: 56   DTALSCFR--DMEKKWWPDQVSYVTLMRGFYSEGKYDMTLRLFSEMLSRNLKIIPDAYEA 229
            +TAL  F     +KK+      YV+L+    S G  D    + +E+  +N  +   A  +
Sbjct: 132  ETALRFFAWAGKQKKYHHKLECYVSLIDLLSSSGDLDRIRYVLAELKEKNFLMNSAAANS 191

Query: 230  VICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEICDHDKALEILRHLNCFE 409
            +I SF   G V     + ++M E G +P++  Y FL+ G V     + A  +      FE
Sbjct: 192  LIKSFGCLGMVDELLWVWRRMKENGIEPSLYTYNFLVNGLVNSMFIESAERV------FE 245

Query: 410  TLKGSQI--EKSTCDKIVNWLCEFGEVELGLDFLDHFKELGI--DLSQYCCLILGGFNWG 577
             ++G +I  +  T + ++   C+ G+ +  ++     +   +  D   Y  LI G ++ G
Sbjct: 246  VMEGGKIVPDVVTYNTMIKGYCKAGKTQKAMEKFRAMEGRNVEPDKITYMTLIQGCYSEG 305

Query: 578  KDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQNVVDQFRELGLEVSSLS 757
              D +  + +   ++EKG  +       +I+G    G+      V +   + G + +  +
Sbjct: 306  --DFDLCLGLYQEMEEKGLEIPPHAYSLVINGLCKGGKCMEGYAVFEDMIQKGCKANVAN 363

Query: 758  YSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGLSKVGKIERAMEISDYMK 937
            Y+++I    K  S   A ++FD M+  G  PDV     V+ GL K G++E AME   + +
Sbjct: 364  YTALIDSYAKCGSIEGAMKLFDRMKNDGLKPDVVTYGVVVNGLCKSGRVEEAMEYFQFCE 423

Query: 938  EQCFDLTLQSYIAIIEGLLKAGNEEMA 1018
                 +    Y ++IEGL KAG  + A
Sbjct: 424  GSGMAVNAMLYSSLIEGLGKAGRLDEA 450



 Score = 66.2 bits (160), Expect = 2e-08
 Identities = 38/146 (26%), Positives = 78/146 (53%)
 Frame = +2

Query: 584  DKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQNVVDQFRELGLEVSSLSYS 763
            D ++   +L+ +KEK + ++      +I  F   G ++    V  + +E G+E S  +Y+
Sbjct: 166  DLDRIRYVLAELKEKNFLMNSAAANSLIKSFGCLGMVDELLWVWRRMKENGIEPSLYTYN 225

Query: 764  SVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGLSKVGKIERAMEISDYMKEQ 943
             +++GL+ +     AE+VF+ M+     PDV   N++I+G  K GK ++AME    M+ +
Sbjct: 226  FLVNGLVNSMFIESAERVFEVMEGGKIVPDVVTYNTMIKGYCKAGKTQKAMEKFRAMEGR 285

Query: 944  CFDLTLQSYIAIIEGLLKAGNEEMAM 1021
              +    +Y+ +I+G    G+ ++ +
Sbjct: 286  NVEPDKITYMTLIQGCYSEGDFDLCL 311


>ref|XP_002329409.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  149 bits (377), Expect = 1e-33
 Identities = 95/314 (30%), Positives = 168/314 (53%), Gaps = 5/314 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDME-KKWWPDQVSYVTLMRGFYSEGKYDMTLRLF 178
            DVV+YNTMI+G C+  +   A   FRDME +   PD+++Y+TL++  Y+EG +D+ L L+
Sbjct: 201  DVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLY 260

Query: 179  SEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEI 358
             EM    L+I P AY  VI   C EG+ + GY + +KM+++GCK  + IY  LI+   + 
Sbjct: 261  HEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKC 320

Query: 359  CDHDKALEILRHLNCFETLKGSQIEKS--TCDKIVNWLCEFGEVELGLDFLDHFKELGID 532
             +  +A+ +      FE +K   +E    T   +VN +C+ G ++  +++L+  +  G+ 
Sbjct: 321  GNMGEAMLL------FERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVA 374

Query: 533  LSQ--YCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQ 706
            ++   Y  LI G    G+   ++A ++   + +KG   D      +ID  + CG+ + A 
Sbjct: 375  VNAMLYSSLIDGLGKAGR--VHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEAL 432

Query: 707  NVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGL 886
                +  + G + +  +Y+ +I+GL +     EA +++D M   G  P  A   ++  GL
Sbjct: 433  AFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKGITPTAAAFRALSIGL 492

Query: 887  SKVGKIERAMEISD 928
               GK+ RA ++ D
Sbjct: 493  CLSGKVARACKLLD 506



 Score =  104 bits (260), Expect = 5e-20
 Identities = 88/346 (25%), Positives = 159/346 (45%), Gaps = 5/346 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDMEKKWW-PDQVSYVTLMRGFYSEGKYDMTLRLF 178
            +V + N++I+        +  L  +R M++    P   +Y  L+ G  +    +   R+ 
Sbjct: 131  NVSAANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGLVNSVFIESAERVL 190

Query: 179  SEMLSRNLKIIPDA--YEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFV 352
              M   N KI PD   Y  +I  +C  G+  + +E  + M  R   P    Y+ LI+   
Sbjct: 191  EVM--ENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDKITYMTLIQACY 248

Query: 353  EICDHDKALEILRHLNCFETLKGSQIEKSTCDKIVNWLCEFGEVELGLDFLDHFKELG-- 526
               D D  L +   ++      G +I       ++  LC+ G+   G    +   + G  
Sbjct: 249  AEGDFDLCLSLYHEMD----ENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCK 304

Query: 527  IDLSQYCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQ 706
            ++++ Y  LI      G  +  +A+ +  R+K++G   D  T   +++     G L+ A 
Sbjct: 305  VNVAIYTALIDSNAKCG--NMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAM 362

Query: 707  NVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGL 886
              ++  R  G+ V+++ YSS+I GL KA    EAE++F+EM   G  PD  C N++I  L
Sbjct: 363  EYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDAL 422

Query: 887  SKVGKIERAMEISDYMKEQCFDLTLQSYIAIIEGLLKAGNEEMAME 1024
            +K GK + A+     M+++  D T+ +Y  +I GL +    E A++
Sbjct: 423  AKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEALK 468


>ref|XP_006850819.1| hypothetical protein AMTR_s00025p00124790 [Amborella trichopoda]
            gi|548854490|gb|ERN12400.1| hypothetical protein
            AMTR_s00025p00124790 [Amborella trichopoda]
          Length = 682

 Score =  146 bits (368), Expect = 1e-32
 Identities = 99/343 (28%), Positives = 175/343 (51%), Gaps = 4/343 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDME-KKWWPDQVSYVTLMRGFYSEGKYDMTLRLF 178
            D V+YN +I+GLC+  +   AL  F+ M  +   PD+++Y+TL++  Y EG +D  L L+
Sbjct: 283  DTVTYNILIKGLCKDGKTQKALEKFKQMGIRNIIPDKITYLTLIQALYPEGNFDACLGLY 342

Query: 179  SEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEI 358
             EM  ++++I P AY  VI     EG+    + + + M ++G KP + IY  L++GF +I
Sbjct: 343  HEMEEKSVEIPPHAYSLVISGLSREGKPFEAFRVFEGMAQKGIKPNVAIYTALMDGFGKI 402

Query: 359  CDHDKALEILRHLNCFETLKGSQIEKSTCDKIVNWLCEFGEVELGLDFLDHFKELGIDLS 538
             D  KA E+   +      +G + ++ T   +++ LC+ G+VE   +     +E+G+ L+
Sbjct: 403  GDESKATELFNKMKA----EGLEPDEVTHSVMISTLCKAGKVEQATEHFVMCREMGLALN 458

Query: 539  --QYCCLILGGFNWGKDDK-NKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQN 709
               Y  LI G    GK  K  +A ++   + + G   D      ++D +   G ++ A +
Sbjct: 459  SISYSSLING---LGKASKLMEAEKLFEEMVDTGCIRDSYCYNSLMDAYGKAGLVDKALD 515

Query: 710  VVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGLS 889
            +  + +  G   +  +Y+ +I+GL +     EA +++D M   G  P  A   ++  GL 
Sbjct: 516  LFKEMQSEGCAPTVYTYTILINGLFREHKNEEALKIWDMMIDKGVTPTPAAVRALSTGLC 575

Query: 890  KVGKIERAMEISDYMKEQCFDLTLQSYIAIIEGLLKAGNEEMA 1018
              GK+ RA  I D +  +   L   +Y+ +I  L KAG  E A
Sbjct: 576  LSGKVGRACRIMDDLAPKGV-LPDTAYVDMINVLCKAGRVEEA 617



 Score =  102 bits (255), Expect = 2e-19
 Identities = 85/318 (26%), Positives = 149/318 (46%), Gaps = 5/318 (1%)
 Frame = +2

Query: 86   EKKWWPDQVSYVTLMRGFYSEGKYDMTLRLFSEMLSRNLKIIPDA--YEAVICSFCIEGE 259
            E K  P   +Y  LM G  +    +  +++F  M S   K  PD   Y  +I   C +G+
Sbjct: 242  ENKIEPSLFTYNCLMDGLVNASYIESAIQVFEVMDSG--KKAPDTVTYNILIKGLCKDGK 299

Query: 260  VLRGYELLQKMLERGCKPTMTIYLFLIEGFVEICDHDKALEILRHLNCFETLKGSQIEKS 439
              +  E  ++M  R   P    YL LI+      + D  L +   +      K  +I   
Sbjct: 300  TQKALEKFKQMGIRNIIPDKITYLTLIQALYPEGNFDACLGLYHEME----EKSVEIPPH 355

Query: 440  TCDKIVNWLCEFGEVELGLDFLDHFKELGI--DLSQYCCLILGGFNWGK-DDKNKAVRIL 610
                +++ L   G+        +   + GI  +++ Y  L+ G   +GK  D++KA  + 
Sbjct: 356  AYSLVISGLSREGKPFEAFRVFEGMAQKGIKPNVAIYTALMDG---FGKIGDESKATELF 412

Query: 611  SRIKEKGYFVDKDTCFKIIDGFSACGELEMAQNVVDQFRELGLEVSSLSYSSVIHGLIKA 790
            +++K +G   D+ T   +I      G++E A       RE+GL ++S+SYSS+I+GL KA
Sbjct: 413  NKMKAEGLEPDEVTHSVMISTLCKAGKVEQATEHFVMCREMGLALNSISYSSLINGLGKA 472

Query: 791  ESFGEAEQVFDEMQILGHDPDVACCNSVIQGLSKVGKIERAMEISDYMKEQCFDLTLQSY 970
                EAE++F+EM   G   D  C NS++    K G +++A+++   M+ +    T+ +Y
Sbjct: 473  SKLMEAEKLFEEMVDTGCIRDSYCYNSLMDAYGKAGLVDKALDLFKEMQSEGCAPTVYTY 532

Query: 971  IAIIEGLLKAGNEEMAME 1024
              +I GL +    E A++
Sbjct: 533  TILINGLFREHKNEEALK 550


>ref|XP_004306013.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
            mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 656

 Score =  145 bits (367), Expect = 2e-32
 Identities = 96/314 (30%), Positives = 165/314 (52%), Gaps = 5/314 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDME-KKWWPDQVSYVTLMRGFYSEGKYDMTLRLF 178
            D+V+YNTMI+G C++ R   A+  FR ME +    D+++Y+TLM+G YSEG +D  L L+
Sbjct: 257  DIVTYNTMIKGYCKAGRTPKAMEKFRSMEGRNVEADKITYMTLMQGCYSEGDFDSCLSLY 316

Query: 179  SEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEI 358
             EM  + +++   AY  VI   C  G+ + G+ + + M+++GCK  +  Y  LI+ + + 
Sbjct: 317  QEMREKRVEVPSHAYSLVINGLCKGGKCVVGFAVFEDMIQKGCKANVANYTALIDSYAKC 376

Query: 359  CDHDKALEILRHLNCFETLKGSQIEKS--TCDKIVNWLCEFGEVELGLDFLDHFKE--LG 526
               ++A+++      FE +K   +E    T   IVN LC+ G VE  +++    ++  + 
Sbjct: 377  GCIEEAMKL------FERMKSDGLEPDGVTYGVIVNGLCKSGRVEEAIEYFQFCQDSRMA 430

Query: 527  IDLSQYCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQ 706
             +   Y  LI G    G+ D+  A R+  ++ EKG   D      +ID  + CG+ + A 
Sbjct: 431  DNAMLYSSLIDGLGKAGRVDE--AERLFEKMIEKGCPPDSYCYNALIDALAKCGKTDEAL 488

Query: 707  NVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGL 886
             +  +  E G + +  +Y+ +I GL K     +A +++D M   G  P  A   ++  GL
Sbjct: 489  ALFKKMEEEGCDQTVYTYTILIDGLFKEHRNEDALKLWDMMIDKGITPTAASFRALSIGL 548

Query: 887  SKVGKIERAMEISD 928
               GK+ RA +I D
Sbjct: 549  CLSGKVARACKILD 562



 Score =  104 bits (259), Expect = 6e-20
 Identities = 81/312 (25%), Positives = 144/312 (46%), Gaps = 4/312 (1%)
 Frame = +2

Query: 101  PDQVSYVTLMRGFYSEGKYDMTLRLFSEMLSRNLKIIPD--AYEAVICSFCIEGEVLRGY 274
            P   +Y  L+ G  +    +   R+F  M     KI+PD   Y  +I  +C  G   +  
Sbjct: 221  PSLFTYNFLVNGLVNSMFIESAERVFEVM--EGGKIVPDIVTYNTMIKGYCKAGRTPKAM 278

Query: 275  ELLQKMLERGCKPTMTIYLFLIEGFVEICDHDKALEILRHLNCFETLKGSQIEKSTCDKI 454
            E  + M  R  +     Y+ L++G     D D  L + + +      K  ++       +
Sbjct: 279  EKFRSMEGRNVEADKITYMTLMQGCYSEGDFDSCLSLYQEMR----EKRVEVPSHAYSLV 334

Query: 455  VNWLCEFGEVELGLDFLDHFKELGI--DLSQYCCLILGGFNWGKDDKNKAVRILSRIKEK 628
            +N LC+ G+  +G    +   + G   +++ Y  LI      G  ++  A+++  R+K  
Sbjct: 335  INGLCKGGKCVVGFAVFEDMIQKGCKANVANYTALIDSYAKCGCIEE--AMKLFERMKSD 392

Query: 629  GYFVDKDTCFKIIDGFSACGELEMAQNVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEA 808
            G   D  T   I++G    G +E A       ++  +  +++ YSS+I GL KA    EA
Sbjct: 393  GLEPDGVTYGVIVNGLCKSGRVEEAIEYFQFCQDSRMADNAMLYSSLIDGLGKAGRVDEA 452

Query: 809  EQVFDEMQILGHDPDVACCNSVIQGLSKVGKIERAMEISDYMKEQCFDLTLQSYIAIIEG 988
            E++F++M   G  PD  C N++I  L+K GK + A+ +   M+E+  D T+ +Y  +I+G
Sbjct: 453  ERLFEKMIEKGCPPDSYCYNALIDALAKCGKTDEALALFKKMEEEGCDQTVYTYTILIDG 512

Query: 989  LLKAGNEEMAME 1024
            L K    E A++
Sbjct: 513  LFKEHRNEDALK 524


>ref|XP_006418224.1| hypothetical protein EUTSA_v10007014mg [Eutrema salsugineum]
            gi|557095995|gb|ESQ36577.1| hypothetical protein
            EUTSA_v10007014mg [Eutrema salsugineum]
          Length = 661

 Score =  145 bits (366), Expect = 3e-32
 Identities = 94/313 (30%), Positives = 165/313 (52%), Gaps = 4/313 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDMEKKWWP-DQVSYVTLMRGFYSEGKYDMTLRLF 178
            DVV+YNTMI+G C++ +   A+   RD+E +    D+++Y+T+++  Y++  +   + L+
Sbjct: 256  DVVTYNTMIKGYCKAGQTQKAMEKLRDLETRGLEADKITYMTMIQACYADSDFSSCVALY 315

Query: 179  SEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEI 358
             EM  + +++ P A+  VI   C EG++  G+ + + M+ +G KP + IY  LI+G+ + 
Sbjct: 316  QEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGHAVFENMVRKGSKPNVAIYTVLIDGYAKY 375

Query: 359  CDHDKALEILRHLNCFETLKGSQIEKSTCDKIVNWLCEFGEVELGLDFLD--HFKELGID 532
               + A+ +L+ +      +G + +  T   +VN LC+ G VE  L   D   FK L I+
Sbjct: 376  GSVEDAIGLLQRM----INEGFEPDVVTYSVVVNGLCKNGRVEEALHCFDTCRFKGLAIN 431

Query: 533  LSQYCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQNV 712
               Y  LI G    G+ D+  A R+   + EKG   D      +ID F+  G+++ A  +
Sbjct: 432  SMFYSSLIDGLGKAGRVDE--AERLFEEMSEKGCTRDSYCYNALIDAFTKSGKVDEALGL 489

Query: 713  VDQFREL-GLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGLS 889
              +  E  G + +  +Y+ +I G+ K     EA +++D M   G  P  AC  ++  GL 
Sbjct: 490  FKRMEEEEGCDQTVYTYTILISGMFKEHRNEEALELWDMMIDKGITPTAACFRALSTGLC 549

Query: 890  KVGKIERAMEISD 928
              GK+ RA +I D
Sbjct: 550  LSGKVARACKILD 562



 Score =  114 bits (284), Expect = 8e-23
 Identities = 91/346 (26%), Positives = 163/346 (47%), Gaps = 5/346 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDMEKKWW-PDQVSYVTLMRGFYSEGKYDMTLRLF 178
            +V + N++I+   +    +  L  +R M++    P   +Y  LM G  S    D   R+F
Sbjct: 186  NVSAANSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSSMFIDSAERVF 245

Query: 179  SEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEI 358
              M    +K     Y  +I  +C  G+  +  E L+ +  RG +     Y+ +I+     
Sbjct: 246  EVMEGGRIKPDVVTYNTMIKGYCKAGQTQKAMEKLRDLETRGLEADKITYMTMIQACYAD 305

Query: 359  CDHDKALEILRHLNCFETLKGSQIEKSTCDKIVNWLCEFGEVELGLDFLDHFKELGI--D 532
             D    + + + ++     KG Q+       ++  LC+ G++  G    ++    G   +
Sbjct: 306  SDFSSCVALYQEMD----EKGIQVPPHAFSLVIGGLCKEGKLNEGHAVFENMVRKGSKPN 361

Query: 533  LSQYCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQNV 712
            ++ Y  LI G   +G  +   A+ +L R+  +G+  D  T   +++G    G +E A + 
Sbjct: 362  VAIYTVLIDGYAKYGSVED--AIGLLQRMINEGFEPDVVTYSVVVNGLCKNGRVEEALHC 419

Query: 713  VDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGLSK 892
             D  R  GL ++S+ YSS+I GL KA    EAE++F+EM   G   D  C N++I   +K
Sbjct: 420  FDTCRFKGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTK 479

Query: 893  VGKIERAMEISDYMKEQ--CFDLTLQSYIAIIEGLLKAGNEEMAME 1024
             GK++ A+ +   M+E+  C D T+ +Y  +I G+ K    E A+E
Sbjct: 480  SGKVDEALGLFKRMEEEEGC-DQTVYTYTILISGMFKEHRNEEALE 524


>ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297338011|gb|EFH68428.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 662

 Score =  145 bits (366), Expect = 3e-32
 Identities = 96/313 (30%), Positives = 162/313 (51%), Gaps = 4/313 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDMEKKWWP-DQVSYVTLMRGFYSEGKYDMTLRLF 178
            DVV+YNTMI+G C++ +   AL   R ME K    D+++Y+T+++  Y++  +   + L+
Sbjct: 256  DVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDFSSCVALY 315

Query: 179  SEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEI 358
             EM  + L++ P A+  VI   C EG++  GY + + M+ +G KP + IY  LI+G+ + 
Sbjct: 316  QEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKT 375

Query: 359  CDHDKALEILRHLNCFETLKGSQIEKSTCDKIVNWLCEFGEVELGLDFLD--HFKELGID 532
               + A+ +L  +      +G   +  T   +VN LC+ G VE  +D+     F  L I+
Sbjct: 376  GSVEDAIRLLHRM----IDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAIN 431

Query: 533  LSQYCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQNV 712
               Y  LI G    G+ D+  A R+   + EKG   D      +ID F+  G+++ A  +
Sbjct: 432  SMFYSSLIDGLGKAGRVDE--AERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALAL 489

Query: 713  VDQFREL-GLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGLS 889
              +  E  G + +  +Y+ +I G+ K     EA +++D M   G  P  AC  ++  GL 
Sbjct: 490  FKRMEEEEGCDQTVYTYTILISGMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTGLC 549

Query: 890  KVGKIERAMEISD 928
              GK+ RA +I D
Sbjct: 550  LSGKVARACKILD 562



 Score =  112 bits (280), Expect = 2e-22
 Identities = 85/312 (27%), Positives = 148/312 (47%), Gaps = 4/312 (1%)
 Frame = +2

Query: 101  PDQVSYVTLMRGFYSEGKYDMTLRLFSEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYEL 280
            P   +Y  LM G  S    D   R+F  M S  +K     Y  +I  +C  G+  +  E 
Sbjct: 220  PTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQKALEK 279

Query: 281  LQKMLERGCKPTMTIYLFLIEGFVEICDHDKALEILRHLNCFETLKGSQIEKSTCDKIVN 460
            L+ M  +G +     Y+ +I+      D    + + + ++     KG Q+       ++ 
Sbjct: 280  LRVMETKGLEADKITYMTMIQACYADSDFSSCVALYQEMD----EKGLQVPPHAFSLVIG 335

Query: 461  WLCEFGEVELGLDFLDHFKELGI--DLSQYCCLILGGFNWGKDDKNKAVRILSRIKEKGY 634
             LC+ G++  G    ++    G   +++ Y  LI G    G  +   A+R+L R+ ++G+
Sbjct: 336  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVED--AIRLLHRMIDEGF 393

Query: 635  FVDKDTCFKIIDGFSACGELEMAQNVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQ 814
              D  T   +++G    G +E A +     R  GL ++S+ YSS+I GL KA    EAE+
Sbjct: 394  NPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAER 453

Query: 815  VFDEMQILGHDPDVACCNSVIQGLSKVGKIERAMEISDYMKEQ--CFDLTLQSYIAIIEG 988
            +F+EM   G   D  C N++I   +K GK++ A+ +   M+E+  C D T+ +Y  +I G
Sbjct: 454  LFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGC-DQTVYTYTILISG 512

Query: 989  LLKAGNEEMAME 1024
            + K    E A++
Sbjct: 513  MFKEHRNEEALK 524


>ref|XP_004248470.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
            mitochondrial-like [Solanum lycopersicum]
          Length = 711

 Score =  145 bits (365), Expect = 3e-32
 Identities = 95/314 (30%), Positives = 173/314 (55%), Gaps = 5/314 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDME-KKWWPDQVSYVTLMRGFYSEGKYDMTLRLF 178
            D+V+YNT+I+G C S +   A+  FRDME +K  PD+++Y+T+M+  Y++G +D  L L+
Sbjct: 312  DIVTYNTIIKGYCRSGKLQKAMEKFRDMEVRKVEPDKITYMTVMQACYADGDFDYCLGLY 371

Query: 179  SEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEI 358
             EM  ++L I P AY  VI   C  G+VL G+ + + M+++G +P ++IY  LI+ +++ 
Sbjct: 372  HEMEEKDLDIPPHAYTLVIGGLCKMGKVLEGFTVFENMIKKGFRPNLSIYTALIDSYMKH 431

Query: 359  CDHDKALEILRHLNCFETLK--GSQIEKSTCDKIVNWLCEFGEVELGLDFLDHFK--ELG 526
             + D+A+ +      F+ +K  G + ++ T   IVN LC+   ++  + +L++ K  ++ 
Sbjct: 432  GNLDEAMRL------FDRMKNEGFEPDEVTFGVIVNGLCKSERLDEAMLWLEYCKNNDVA 485

Query: 527  IDLSQYCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQ 706
            I+   Y  LI G    G+ D+  A  +   + EKG   D      +ID  +  G+++ A 
Sbjct: 486  INAMFYSSLIDGLGKAGRVDE--ARELFEEMAEKGCTRDSYCYNALIDALAKNGKIDEAL 543

Query: 707  NVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGL 886
             +  +  + G + +  +Y+ +I G+ K     EA +++  M   G  P+ A   ++  GL
Sbjct: 544  VLFKRMEDEGCDQTVYTYTILISGMFKEHQNEEALKLWHMMIDKGITPNAASFRALSTGL 603

Query: 887  SKVGKIERAMEISD 928
               GK+ RA +I D
Sbjct: 604  CLSGKVARACKILD 617



 Score =  112 bits (279), Expect = 3e-22
 Identities = 91/346 (26%), Positives = 162/346 (46%), Gaps = 5/346 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDMEKKWW-PDQVSYVTLMRGFYSEGKYDMTLRLF 178
            +V + N++IR   E    +  L  +R M++    P   +Y  LM G  +    +   R+F
Sbjct: 242  NVAAVNSLIRSFGELGMVEELLFVWRQMKENGIEPSLYTYNFLMNGLVNSMFVESAERVF 301

Query: 179  SEMLSRNLKIIPD--AYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFV 352
              M S   K+ PD   Y  +I  +C  G++ +  E  + M  R  +P    Y+ +++   
Sbjct: 302  EVMESG--KVNPDIVTYNTIIKGYCRSGKLQKAMEKFRDMEVRKVEPDKITYMTVMQACY 359

Query: 353  EICDHDKALEILRHLNCFETLKGSQIEKSTCDKIVNWLCEFGEVELGLDFLDHFKELGI- 529
               D D  L +   +      K   I       ++  LC+ G+V  G    ++  + G  
Sbjct: 360  ADGDFDYCLGLYHEME----EKDLDIPPHAYTLVIGGLCKMGKVLEGFTVFENMIKKGFR 415

Query: 530  -DLSQYCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQ 706
             +LS Y  LI      G  D+  A+R+  R+K +G+  D+ T   I++G      L+ A 
Sbjct: 416  PNLSIYTALIDSYMKHGNLDE--AMRLFDRMKNEGFEPDEVTFGVIVNGLCKSERLDEAM 473

Query: 707  NVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGL 886
              ++  +   + ++++ YSS+I GL KA    EA ++F+EM   G   D  C N++I  L
Sbjct: 474  LWLEYCKNNDVAINAMFYSSLIDGLGKAGRVDEARELFEEMAEKGCTRDSYCYNALIDAL 533

Query: 887  SKVGKIERAMEISDYMKEQCFDLTLQSYIAIIEGLLKAGNEEMAME 1024
            +K GKI+ A+ +   M+++  D T+ +Y  +I G+ K    E A++
Sbjct: 534  AKNGKIDEALVLFKRMEDEGCDQTVYTYTILISGMFKEHQNEEALK 579



 Score = 61.6 bits (148), Expect = 5e-07
 Identities = 35/134 (26%), Positives = 71/134 (52%)
 Frame = +2

Query: 605  ILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQNVVDQFRELGLEVSSLSYSSVIHGLI 784
            + S  K KG+ ++      +I  F   G +E    V  Q +E G+E S  +Y+ +++GL+
Sbjct: 230  VFSEFKHKGFLMNVAAVNSLIRSFGELGMVEELLFVWRQMKENGIEPSLYTYNFLMNGLV 289

Query: 785  KAESFGEAEQVFDEMQILGHDPDVACCNSVIQGLSKVGKIERAMEISDYMKEQCFDLTLQ 964
             +     AE+VF+ M+    +PD+   N++I+G  + GK+++AME    M+ +  +    
Sbjct: 290  NSMFVESAERVFEVMESGKVNPDIVTYNTIIKGYCRSGKLQKAMEKFRDMEVRKVEPDKI 349

Query: 965  SYIAIIEGLLKAGN 1006
            +Y+ +++     G+
Sbjct: 350  TYMTVMQACYADGD 363


>gb|ESW05301.1| hypothetical protein PHAVU_011G168600g [Phaseolus vulgaris]
            gi|561006308|gb|ESW05302.1| hypothetical protein
            PHAVU_011G168600g [Phaseolus vulgaris]
          Length = 620

 Score =  143 bits (361), Expect = 1e-31
 Identities = 102/345 (29%), Positives = 175/345 (50%), Gaps = 6/345 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDMEK-KWWPDQVSYVTLMRGFYSEGKYDMTLRLF 178
            D+VSYNT+++G C+  R   AL+  R+ME     PD+V+Y+TLM+  Y+EG  D  + L+
Sbjct: 218  DIVSYNTLLKGYCKVGRTRNALATLREMEAGNVPPDEVTYMTLMQACYNEGDMDSCVSLY 277

Query: 179  SEMLSRNL---KIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGF 349
             EM    +   KI   AY   IC  C +G+V+ G  + + M+++GC     +Y  +I+G+
Sbjct: 278  HEMEEDEVLVTKIPSHAYSLTICGLCKQGKVVEGCSVFESMVKKGCVAHKAVYTAIIDGY 337

Query: 350  VEICDHDKALEILRHLNCFETLKGSQIEKSTCDKIVNWLCEFGEVELGLDFLDHFKELGI 529
             +  + D AL  L  +     + G + ++ T   +V  LC+ G+VE  +D+    K  G+
Sbjct: 338  AKSGNMDVALSFLERMK----VDGVEPDEVTYGAVVGGLCKSGKVEEAMDYYRFCKGNGV 393

Query: 530  DLSQ--YCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMA 703
             ++   Y  LI G    G+ D+  A R+   + E+G   D      ++DG    G ++ A
Sbjct: 394  AVNAVFYSSLIDGLGKVGRVDE--AERLFEEMAEEGCPPDSYCYNALMDGLCKSGRVDEA 451

Query: 704  QNVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQG 883
              +  +  + G E +  +++ +I  L K     EA ++++EM   G  P+ AC  ++  G
Sbjct: 452  LMLFRRMEQEGCEHTVYTFTILISELFKERRNEEALKLWEEMIDKGVTPNAACFRALSFG 511

Query: 884  LSKVGKIERAMEISDYMKEQCFDLTLQSYIAIIEGLLKAGNEEMA 1018
            L   GK+ RA  + D +      L  ++Y  +I  L KAG  + A
Sbjct: 512  LCLSGKVARACRVLDELAPMGIVLE-RAYEDMIGVLCKAGRVKEA 555



 Score = 88.6 bits (218), Expect = 4e-15
 Identities = 75/304 (24%), Positives = 135/304 (44%), Gaps = 4/304 (1%)
 Frame = +2

Query: 125  LMRGFYSEGKYDMTLRLFSEMLSRNLKIIPD--AYEAVICSFCIEGEVLRGYELLQKMLE 298
            L+    +    D T R+F  M   +    PD  +Y  ++  +C  G        L++M  
Sbjct: 189  LLNALVNASLVDSTERVFKSM-QESASPKPDIVSYNTLLKGYCKVGRTRNALATLREMEA 247

Query: 299  RGCKPTMTIYLFLIEGFVEICDHDKALEILRHLNCFETLKGSQIEKSTCDKIVNWLCEFG 478
                P    Y+ L++      D D  + +   +   E L  ++I        +  LC+ G
Sbjct: 248  GNVPPDEVTYMTLMQACYNEGDMDSCVSLYHEMEEDEVLV-TKIPSHAYSLTICGLCKQG 306

Query: 479  EVELGLDFLDHFKELGIDLSQ--YCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDT 652
            +V  G    +   + G    +  Y  +I G    G  D   A+  L R+K  G   D+ T
Sbjct: 307  KVVEGCSVFESMVKKGCVAHKAVYTAIIDGYAKSGNMDV--ALSFLERMKVDGVEPDEVT 364

Query: 653  CFKIIDGFSACGELEMAQNVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQ 832
               ++ G    G++E A +     +  G+ V+++ YSS+I GL K     EAE++F+EM 
Sbjct: 365  YGAVVGGLCKSGKVEEAMDYYRFCKGNGVAVNAVFYSSLIDGLGKVGRVDEAERLFEEMA 424

Query: 833  ILGHDPDVACCNSVIQGLSKVGKIERAMEISDYMKEQCFDLTLQSYIAIIEGLLKAGNEE 1012
              G  PD  C N+++ GL K G+++ A+ +   M+++  + T+ ++  +I  L K    E
Sbjct: 425  EEGCPPDSYCYNALMDGLCKSGRVDEALMLFRRMEQEGCEHTVYTFTILISELFKERRNE 484

Query: 1013 MAME 1024
             A++
Sbjct: 485  EALK 488


>ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
            mitochondrial-like [Cucumis sativus]
          Length = 653

 Score =  143 bits (360), Expect = 1e-31
 Identities = 95/314 (30%), Positives = 161/314 (51%), Gaps = 5/314 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDME-KKWWPDQVSYVTLMRGFYSEGKYDMTLRLF 178
            D V+YN MI+G C++ +   A+  FRDME K   PD+++Y+TL++  YSE  +D  L L+
Sbjct: 254  DTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLY 313

Query: 179  SEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEI 358
             EM  R L+I P +Y  VI   C + + +  Y + + M ++GC+  + IY  LI+ + + 
Sbjct: 314  LEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKN 373

Query: 359  CDHDKALEILRHLNCFETLKGSQIEKS--TCDKIVNWLCEFGEVELGLDFLDHFKELGID 532
               ++A+ +      FE +K    E    T   +VN LC+ G ++ G++  D  +  G+ 
Sbjct: 374  GSMEEAMRL------FERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVA 427

Query: 533  LSQ--YCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQ 706
            ++   Y  LI G    G+ +   A  +   + EKG   D      IID  +  G+++ A 
Sbjct: 428  INAMFYASLIDGLGKAGRIED--AENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQAL 485

Query: 707  NVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGL 886
             +  +  E G + +  +++ +I GL K     EA + +D+M   G  P VA   ++  GL
Sbjct: 486  ALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGL 545

Query: 887  SKVGKIERAMEISD 928
               GK+ RA +I D
Sbjct: 546  CLCGKVARACKILD 559



 Score =  104 bits (260), Expect = 5e-20
 Identities = 79/312 (25%), Positives = 147/312 (47%), Gaps = 4/312 (1%)
 Frame = +2

Query: 101  PDQVSYVTLMRGFYSEGKYDMTLRLFSEMLSRNLKIIPDA--YEAVICSFCIEGEVLRGY 274
            P   +Y  L+ G  +    +   ++F  M     KI+PD   Y  +I  +C  G++ +  
Sbjct: 218  PSLYTYNFLVNGLVNSMFIESAEKVFEVMDGG--KIVPDTVTYNIMIKGYCKAGKLQKAM 275

Query: 275  ELLQKMLERGCKPTMTIYLFLIEGFVEICDHDKALEILRHLNCFETLKGSQIEKSTCDKI 454
            E  + M  +  KP    Y+ LI+      D D  L +   +      +G +I   +   +
Sbjct: 276  EKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEME----ERGLEIPPHSYSLV 331

Query: 455  VNWLCEFGEVELGLDFLDHFKELGI--DLSQYCCLILGGFNWGKDDKNKAVRILSRIKEK 628
            +  LC+  +        +   + G   +++ Y  LI      G  ++  A+R+  R+K +
Sbjct: 332  IGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEE--AMRLFERMKNE 389

Query: 629  GYFVDKDTCFKIIDGFSACGELEMAQNVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEA 808
            G+  D  T   +++G    G L+    + D  R  G+ ++++ Y+S+I GL KA    +A
Sbjct: 390  GFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDA 449

Query: 809  EQVFDEMQILGHDPDVACCNSVIQGLSKVGKIERAMEISDYMKEQCFDLTLQSYIAIIEG 988
            E +F+EM   G   D  C N++I  L+K GKI++A+ +   M+E+  D T+ ++  +I+G
Sbjct: 450  ENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDG 509

Query: 989  LLKAGNEEMAME 1024
            L K    E A++
Sbjct: 510  LFKEHKNEEAIK 521


>ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
            mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  143 bits (360), Expect = 1e-31
 Identities = 95/314 (30%), Positives = 161/314 (51%), Gaps = 5/314 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDME-KKWWPDQVSYVTLMRGFYSEGKYDMTLRLF 178
            D V+YN MI+G C++ +   A+  FRDME K   PD+++Y+TL++  YSE  +D  L L+
Sbjct: 252  DTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLY 311

Query: 179  SEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEI 358
             EM  R L+I P +Y  VI   C + + +  Y + + M ++GC+  + IY  LI+ + + 
Sbjct: 312  LEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKN 371

Query: 359  CDHDKALEILRHLNCFETLKGSQIEKS--TCDKIVNWLCEFGEVELGLDFLDHFKELGID 532
               ++A+ +      FE +K    E    T   +VN LC+ G ++ G++  D  +  G+ 
Sbjct: 372  GSMEEAMRL------FERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVA 425

Query: 533  LSQ--YCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQ 706
            ++   Y  LI G    G+ +   A  +   + EKG   D      IID  +  G+++ A 
Sbjct: 426  INAMFYASLIDGLGKAGRIED--AENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQAL 483

Query: 707  NVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGL 886
             +  +  E G + +  +++ +I GL K     EA + +D+M   G  P VA   ++  GL
Sbjct: 484  ALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGL 543

Query: 887  SKVGKIERAMEISD 928
               GK+ RA +I D
Sbjct: 544  CLCGKVARACKILD 557



 Score =  104 bits (260), Expect = 5e-20
 Identities = 79/312 (25%), Positives = 147/312 (47%), Gaps = 4/312 (1%)
 Frame = +2

Query: 101  PDQVSYVTLMRGFYSEGKYDMTLRLFSEMLSRNLKIIPDA--YEAVICSFCIEGEVLRGY 274
            P   +Y  L+ G  +    +   ++F  M     KI+PD   Y  +I  +C  G++ +  
Sbjct: 216  PSLYTYNFLVNGLVNSMFIESAEKVFEVMDGG--KIVPDTVTYNIMIKGYCKAGKLQKAM 273

Query: 275  ELLQKMLERGCKPTMTIYLFLIEGFVEICDHDKALEILRHLNCFETLKGSQIEKSTCDKI 454
            E  + M  +  KP    Y+ LI+      D D  L +   +      +G +I   +   +
Sbjct: 274  EKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEME----ERGLEIPPHSYSLV 329

Query: 455  VNWLCEFGEVELGLDFLDHFKELGI--DLSQYCCLILGGFNWGKDDKNKAVRILSRIKEK 628
            +  LC+  +        +   + G   +++ Y  LI      G  ++  A+R+  R+K +
Sbjct: 330  IGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEE--AMRLFERMKNE 387

Query: 629  GYFVDKDTCFKIIDGFSACGELEMAQNVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEA 808
            G+  D  T   +++G    G L+    + D  R  G+ ++++ Y+S+I GL KA    +A
Sbjct: 388  GFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDA 447

Query: 809  EQVFDEMQILGHDPDVACCNSVIQGLSKVGKIERAMEISDYMKEQCFDLTLQSYIAIIEG 988
            E +F+EM   G   D  C N++I  L+K GKI++A+ +   M+E+  D T+ ++  +I+G
Sbjct: 448  ENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDG 507

Query: 989  LLKAGNEEMAME 1024
            L K    E A++
Sbjct: 508  LFKEHKNEEAIK 519


>ref|XP_006306944.1| hypothetical protein CARUB_v10008524mg [Capsella rubella]
            gi|482575655|gb|EOA39842.1| hypothetical protein
            CARUB_v10008524mg [Capsella rubella]
          Length = 663

 Score =  142 bits (357), Expect = 3e-31
 Identities = 93/313 (29%), Positives = 161/313 (51%), Gaps = 4/313 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDMEKKWWP-DQVSYVTLMRGFYSEGKYDMTLRLF 178
            DVV+YNTMI+G C++ +   A+   RDME +    D+V+Y+T+++  Y++  +   + L+
Sbjct: 257  DVVTYNTMIKGYCKTGQTQKAIEKLRDMETRGLEADKVTYMTVIQACYADSDFGSCVALY 316

Query: 179  SEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEI 358
             EM  + +++ P  +  VI   C EG++  GY + + M+ +G KP + IY  LI+G+ + 
Sbjct: 317  QEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKS 376

Query: 359  CDHDKALEILRHLNCFETLKGSQIEKSTCDKIVNWLCEFGEVELGLDFLD--HFKELGID 532
               + A+ +L  +      +G + +  T   +VN LC+ G VE  LD+     F    I+
Sbjct: 377  GSVEDAIRLLHRM----IDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGFAIN 432

Query: 533  LSQYCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQNV 712
               Y  LI G    G+ D+  A R+   + EKG   D      +ID  +  G+++ A  +
Sbjct: 433  SMFYSSLIDGLGKAGRIDE--AERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTL 490

Query: 713  VDQFREL-GLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGLS 889
              +  E  G + +  +Y+ +I G+ K     EA +++D M   G  P  AC  ++  GL 
Sbjct: 491  FKRMEEEEGCDQTVYTYTILISGMFKDHRNEEALKLWDMMIDKGITPTAACFRALSTGLC 550

Query: 890  KVGKIERAMEISD 928
              GK+ RA +I D
Sbjct: 551  LSGKVARACKILD 563



 Score =  114 bits (286), Expect = 5e-23
 Identities = 93/345 (26%), Positives = 162/345 (46%), Gaps = 5/345 (1%)
 Frame = +2

Query: 5    VVSYNTMIRGLCESRRNDTALSCFRDMEKKWW-PDQVSYVTLMRGFYSEGKYDMTLRLFS 181
            V + N +I+   +    +  L  +R M++    P   +Y  LM G  S    D   R+F 
Sbjct: 188  VAAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSSMFIDSAERVFG 247

Query: 182  EMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEIC 361
             M S  +K     Y  +I  +C  G+  +  E L+ M  RG +     Y+ +I+      
Sbjct: 248  VMESGRIKPDVVTYNTMIKGYCKTGQTQKAIEKLRDMETRGLEADKVTYMTVIQACYADS 307

Query: 362  DHDKALEILRHLNCFETLKGSQIEKSTCDKIVNWLCEFGEVELGLDFLDHFKELGI--DL 535
            D    + + + ++     KG Q+       ++  LC+ G++  G    ++    G   ++
Sbjct: 308  DFGSCVALYQEMD----EKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNV 363

Query: 536  SQYCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQNVV 715
            + Y  LI G    G  +   A+R+L R+ ++G+  D  T   +++G    G +E A +  
Sbjct: 364  AIYTVLIDGYAKSGSVED--AIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYF 421

Query: 716  DQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGLSKV 895
               R  G  ++S+ YSS+I GL KA    EAE++F+EM   G   D  C N++I  L+K 
Sbjct: 422  QTCRFNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKH 481

Query: 896  GKIERAMEISDYMKEQ--CFDLTLQSYIAIIEGLLKAGNEEMAME 1024
            GK++ AM +   M+E+  C D T+ +Y  +I G+ K    E A++
Sbjct: 482  GKVDEAMTLFKRMEEEEGC-DQTVYTYTILISGMFKDHRNEEALK 525



 Score = 87.8 bits (216), Expect = 6e-15
 Identities = 76/313 (24%), Positives = 134/313 (42%), Gaps = 2/313 (0%)
 Frame = +2

Query: 86   EKKWWPDQVSYVTLMRGFYSEGKYDMTLRLFSEMLSRNLKIIPDAYEAVICSFCIEGEVL 265
            +KK+W +   YV+L+         D    L SE+      +   A  A+I SF   G V 
Sbjct: 146  QKKYWHNLECYVSLVDVLALAKDVDRIRFLCSEIRKFEFPMTVAAANALIKSFGKLGMVE 205

Query: 266  RGYELLQKMLERGCKPTMTIYLFLIEGFVEICDHDKALEILRHLNCFETLKGSQIEKS-- 439
                + +KM E G +PT+  Y FL+ G V     D A  +      F  ++  +I+    
Sbjct: 206  ELLWVWRKMKENGIEPTLYTYNFLMNGLVSSMFIDSAERV------FGVMESGRIKPDVV 259

Query: 440  TCDKIVNWLCEFGEVELGLDFLDHFKELGIDLSQYCCLILGGFNWGKDDKNKAVRILSRI 619
            T + ++   C+ G+ +  ++ L   +  G++  +   + +    +   D    V +   +
Sbjct: 260  TYNTMIKGYCKTGQTQKAIEKLRDMETRGLEADKVTYMTVIQACYADSDFGSCVALYQEM 319

Query: 620  KEKGYFVDKDTCFKIIDGFSACGELEMAQNVVDQFRELGLEVSSLSYSSVIHGLIKAESF 799
             EKG  V       +I G    G+L     V +     G + +   Y+ +I G  K+ S 
Sbjct: 320  DEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSV 379

Query: 800  GEAEQVFDEMQILGHDPDVACCNSVIQGLSKVGKIERAMEISDYMKEQCFDLTLQSYIAI 979
             +A ++   M   G  PDV   + V+ GL K G++E A++     +   F +    Y ++
Sbjct: 380  EDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGFAINSMFYSSL 439

Query: 980  IEGLLKAGNEEMA 1018
            I+GL KAG  + A
Sbjct: 440  IDGLGKAGRIDEA 452


>ref|XP_006447324.1| hypothetical protein CICLE_v10014552mg [Citrus clementina]
            gi|568877202|ref|XP_006491635.1| PREDICTED:
            pentatricopeptide repeat-containing protein At1g03560,
            mitochondrial-like [Citrus sinensis]
            gi|557549935|gb|ESR60564.1| hypothetical protein
            CICLE_v10014552mg [Citrus clementina]
          Length = 650

 Score =  140 bits (354), Expect = 6e-31
 Identities = 94/314 (29%), Positives = 162/314 (51%), Gaps = 5/314 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDME-KKWWPDQVSYVTLMRGFYSEGKYDMTLRLF 178
            D V+YNTMI+G C+  +   A+  FR ME +   PD+++Y+TL++  Y EG +D  L L+
Sbjct: 251  DGVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLY 310

Query: 179  SEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEI 358
             EM  + ++I   AY  VI   C  G+ + G+ + + M+ RGC+P + IY  LI+ + ++
Sbjct: 311  HEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKL 370

Query: 359  CDHDKALEILRHLNCFETLKGSQIEKS--TCDKIVNWLCEFGEVELGLDFLDHFKELGID 532
               ++A+      N FE +K   +E    T   IV  LC+   +E  + + +  +  G+ 
Sbjct: 371  GSMNEAI------NIFERMKYEGVEPDDVTYRVIVGGLCKNERLEEAMQYFEFCRANGVA 424

Query: 533  LSQ--YCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQ 706
            ++   Y  LI G    G+ D+  A  +   + EKG   D      +ID  + CG+L+ A 
Sbjct: 425  VNAMFYSSLIDGLGKAGRVDE--AEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEAL 482

Query: 707  NVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGL 886
             +  +  + G + +  +Y+ +I+G+ K     EA +++D M   G  P  A   ++  GL
Sbjct: 483  ALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGL 542

Query: 887  SKVGKIERAMEISD 928
               GK+ RA +I D
Sbjct: 543  CLSGKVARACKILD 556



 Score =  106 bits (265), Expect = 1e-20
 Identities = 86/312 (27%), Positives = 142/312 (45%), Gaps = 4/312 (1%)
 Frame = +2

Query: 101  PDQVSYVTLMRGFYSEGKYDMTLRLFSEMLSRNLKIIPDA--YEAVICSFCIEGEVLRGY 274
            P   +Y  LM G  +    + +  +F  M   N K+ PD   Y  +I  +C  G+  +  
Sbjct: 215  PSLYTYNFLMNGLVNSMFIESSELVFKVM--ENGKVGPDGVTYNTMIKGYCKVGKTQKAM 272

Query: 275  ELLQKMLERGCKPTMTIYLFLIEGFVEICDHDKALEILRHLNCFETLKGSQIEKSTCDKI 454
            E  + M  R  +P    Y+ LI+      D D  L +   ++     KG +I     + +
Sbjct: 273  EKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMD----EKGIEIPSHAYNLV 328

Query: 455  VNWLCEFGEVELGLDFLDHFKELGI--DLSQYCCLILGGFNWGKDDKNKAVRILSRIKEK 628
            +  LC+ G+   G    +     G   +++ Y  LI      G    N+A+ I  R+K +
Sbjct: 329  IGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGS--MNEAINIFERMKYE 386

Query: 629  GYFVDKDTCFKIIDGFSACGELEMAQNVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEA 808
            G   D  T   I+ G      LE A    +  R  G+ V+++ YSS+I GL KA    EA
Sbjct: 387  GVEPDDVTYRVIVGGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEA 446

Query: 809  EQVFDEMQILGHDPDVACCNSVIQGLSKVGKIERAMEISDYMKEQCFDLTLQSYIAIIEG 988
            E++F+EM   G   D  C N +I  L+K GK++ A+ +   M+++  D T+ +Y  +I G
Sbjct: 447  EELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILING 506

Query: 989  LLKAGNEEMAME 1024
            + K    E A++
Sbjct: 507  MFKEHRNEEALK 518



 Score = 59.3 bits (142), Expect = 2e-06
 Identities = 41/153 (26%), Positives = 73/153 (47%)
 Frame = +2

Query: 548  CLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQNVVDQFR 727
            CL L G      D ++   + + +KEKG+ +       +I  F   G +E    V    +
Sbjct: 156  CLALCG------DVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMK 209

Query: 728  ELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGLSKVGKIE 907
            E G+E S  +Y+ +++GL+ +     +E VF  M+     PD    N++I+G  KVGK +
Sbjct: 210  ENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDGVTYNTMIKGYCKVGKTQ 269

Query: 908  RAMEISDYMKEQCFDLTLQSYIAIIEGLLKAGN 1006
            +AME    M+ +       +Y+ +I+     G+
Sbjct: 270  KAMEKFRAMEARNVQPDKITYMTLIQACYLEGD 302


>ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At1g03560, mitochondrial; Flags: Precursor
            gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18
            [Arabidopsis thaliana] gi|332189465|gb|AEE27586.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 660

 Score =  140 bits (354), Expect = 6e-31
 Identities = 92/313 (29%), Positives = 163/313 (52%), Gaps = 4/313 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDMEKKWWP-DQVSYVTLMRGFYSEGKYDMTLRLF 178
            D+V+YNTMI+G C++ +   A+   RDME +    D+++Y+T+++  Y++  +   + L+
Sbjct: 256  DIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALY 315

Query: 179  SEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEI 358
             EM  + +++ P A+  VI   C EG++  GY + + M+ +G KP + IY  LI+G+ + 
Sbjct: 316  QEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKS 375

Query: 359  CDHDKALEILRHLNCFETLKGSQIEKSTCDKIVNWLCEFGEVELGLDFLD--HFKELGID 532
               + A+ +L  +      +G + +  T   +VN LC+ G VE  LD+     F  L I+
Sbjct: 376  GSVEDAIRLLHRM----IDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAIN 431

Query: 533  LSQYCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQNV 712
               Y  LI G    G+ D  +A R+   + EKG   D      +ID F+   +++ A  +
Sbjct: 432  SMFYSSLIDGLGKAGRVD--EAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIAL 489

Query: 713  VDQF-RELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGLS 889
              +   E G + +  +Y+ ++ G+ K     EA +++D M   G  P  AC  ++  GL 
Sbjct: 490  FKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLC 549

Query: 890  KVGKIERAMEISD 928
              GK+ RA +I D
Sbjct: 550  LSGKVARACKILD 562



 Score =  106 bits (265), Expect = 1e-20
 Identities = 84/312 (26%), Positives = 147/312 (47%), Gaps = 4/312 (1%)
 Frame = +2

Query: 101  PDQVSYVTLMRGFYSEGKYDMTLRLFSEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYEL 280
            P   +Y  LM G  S    D   R+F  M S  +K     Y  +I  +C  G+  +  E 
Sbjct: 220  PTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEK 279

Query: 281  LQKMLERGCKPTMTIYLFLIEGFVEICDHDKALEILRHLNCFETLKGSQIEKSTCDKIVN 460
            L+ M  RG +     Y+ +I+      D    + + + ++     KG Q+       ++ 
Sbjct: 280  LRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMD----EKGIQVPPHAFSLVIG 335

Query: 461  WLCEFGEVELGLDFLDHFKELGI--DLSQYCCLILGGFNWGKDDKNKAVRILSRIKEKGY 634
             LC+ G++  G    ++    G   +++ Y  LI G    G  +   A+R+L R+ ++G+
Sbjct: 336  GLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVED--AIRLLHRMIDEGF 393

Query: 635  FVDKDTCFKIIDGFSACGELEMAQNVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQ 814
              D  T   +++G    G +E A +     R  GL ++S+ YSS+I GL KA    EAE+
Sbjct: 394  KPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAER 453

Query: 815  VFDEMQILGHDPDVACCNSVIQGLSKVGKIERAMEISDYMKEQ--CFDLTLQSYIAIIEG 988
            +F+EM   G   D  C N++I   +K  K++ A+ +   M+E+  C D T+ +Y  ++ G
Sbjct: 454  LFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGC-DQTVYTYTILLSG 512

Query: 989  LLKAGNEEMAME 1024
            + K    E A++
Sbjct: 513  MFKEHRNEEALK 524


>ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223527482|gb|EEF29611.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 647

 Score =  140 bits (354), Expect = 6e-31
 Identities = 94/314 (29%), Positives = 163/314 (51%), Gaps = 3/314 (0%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDME-KKWWPDQVSYVTLMRGFYSEGKYDMTLRLF 178
            DVV+YNTMI+G CE  +   A    + ME +   PD+++Y+TL++  Y+EG +D  L L+
Sbjct: 248  DVVTYNTMIKGYCEVGKTRKAFEKLKAMELRNVAPDKITYMTLIQACYAEGDFDSCLGLY 307

Query: 179  SEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEI 358
             EM  + L+I P  Y  VI   C +G+ + GY + + M+ +GCK  + IY  LI+   + 
Sbjct: 308  HEMDEKGLEIPPHVYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKC 367

Query: 359  CDHDKALEILRHLNCFETLKGSQIEKSTCDKIVNWLCEFGEVELGLDFLDHFKELGIDLS 538
             +  +A+ + + +      +G + ++ T   IVN LC+ G ++  L++++     G+ ++
Sbjct: 368  GNMGEAMLLFKRMK----KEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVN 423

Query: 539  Q--YCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQNV 712
               Y  LI G    G+ D+  A RI   + +KG   D      +ID  + CG+++ A  +
Sbjct: 424  AMFYSSLIDGLGKSGRVDE--AERIFYEMVKKGCPPDSYCYNALIDALAKCGKIDEALAL 481

Query: 713  VDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGLSK 892
              +    G + +  +Y+ +I GL +     EA  ++D M   G  P  A   ++  GL  
Sbjct: 482  SKRMEVDGCDQTVYTYTILITGLFREHRNEEALTLWDLMIDKGITPTAAAFRALSTGLCL 541

Query: 893  VGKIERAMEISDYM 934
             GK+ RA +I D M
Sbjct: 542  SGKVARACKILDEM 555



 Score =  111 bits (277), Expect = 5e-22
 Identities = 94/344 (27%), Positives = 159/344 (46%), Gaps = 5/344 (1%)
 Frame = +2

Query: 5    VVSYNTMIRGLCESRRNDTALSCFRDMEKKWW-PDQVSYVTLMRGFYSEGKYDMTLRLFS 181
            V S N++I+        +  L  +R M++    P   SY  L+ G  +    +   R+F 
Sbjct: 179  VYSSNSLIKSFGNLGMVEEVLWVWRRMKENGIEPSLFSYNFLVNGLVNSKFIESAERVFE 238

Query: 182  EMLSRNLKIIPDA--YEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVE 355
             M   N KI PD   Y  +I  +C  G+  + +E L+ M  R   P    Y+ LI+    
Sbjct: 239  VM--ENGKIGPDVVTYNTMIKGYCEVGKTRKAFEKLKAMELRNVAPDKITYMTLIQACYA 296

Query: 356  ICDHDKALEILRHLNCFETLKGSQIEKSTCDKIVNWLCEFGEVELGLDFLDHFKELGI-- 529
              D D  L +   ++     KG +I       ++  LC+ G+   G    ++    G   
Sbjct: 297  EGDFDSCLGLYHEMD----EKGLEIPPHVYSLVIGGLCKDGKRVEGYTVFENMISKGCKA 352

Query: 530  DLSQYCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQN 709
            +++ Y  LI      G  +  +A+ +  R+K++G   D+ T   I++     G L+ A  
Sbjct: 353  NVAIYTALIDSNAKCG--NMGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALE 410

Query: 710  VVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGLS 889
             ++     G+ V+++ YSS+I GL K+    EAE++F EM   G  PD  C N++I  L+
Sbjct: 411  YMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYNALIDALA 470

Query: 890  KVGKIERAMEISDYMKEQCFDLTLQSYIAIIEGLLKAGNEEMAM 1021
            K GKI+ A+ +S  M+    D T+ +Y  +I GL +    E A+
Sbjct: 471  KCGKIDEALALSKRMEVDGCDQTVYTYTILITGLFREHRNEEAL 514


>dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
          Length = 642

 Score =  140 bits (354), Expect = 6e-31
 Identities = 92/313 (29%), Positives = 163/313 (52%), Gaps = 4/313 (1%)
 Frame = +2

Query: 2    DVVSYNTMIRGLCESRRNDTALSCFRDMEKKWWP-DQVSYVTLMRGFYSEGKYDMTLRLF 178
            D+V+YNTMI+G C++ +   A+   RDME +    D+++Y+T+++  Y++  +   + L+
Sbjct: 238  DIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALY 297

Query: 179  SEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYELLQKMLERGCKPTMTIYLFLIEGFVEI 358
             EM  + +++ P A+  VI   C EG++  GY + + M+ +G KP + IY  LI+G+ + 
Sbjct: 298  QEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKS 357

Query: 359  CDHDKALEILRHLNCFETLKGSQIEKSTCDKIVNWLCEFGEVELGLDFLD--HFKELGID 532
               + A+ +L  +      +G + +  T   +VN LC+ G VE  LD+     F  L I+
Sbjct: 358  GSVEDAIRLLHRM----IDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAIN 413

Query: 533  LSQYCCLILGGFNWGKDDKNKAVRILSRIKEKGYFVDKDTCFKIIDGFSACGELEMAQNV 712
               Y  LI G    G+ D  +A R+   + EKG   D      +ID F+   +++ A  +
Sbjct: 414  SMFYSSLIDGLGKAGRVD--EAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIAL 471

Query: 713  VDQF-RELGLEVSSLSYSSVIHGLIKAESFGEAEQVFDEMQILGHDPDVACCNSVIQGLS 889
              +   E G + +  +Y+ ++ G+ K     EA +++D M   G  P  AC  ++  GL 
Sbjct: 472  FKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLC 531

Query: 890  KVGKIERAMEISD 928
              GK+ RA +I D
Sbjct: 532  LSGKVARACKILD 544



 Score =  106 bits (265), Expect = 1e-20
 Identities = 84/312 (26%), Positives = 147/312 (47%), Gaps = 4/312 (1%)
 Frame = +2

Query: 101  PDQVSYVTLMRGFYSEGKYDMTLRLFSEMLSRNLKIIPDAYEAVICSFCIEGEVLRGYEL 280
            P   +Y  LM G  S    D   R+F  M S  +K     Y  +I  +C  G+  +  E 
Sbjct: 202  PTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEK 261

Query: 281  LQKMLERGCKPTMTIYLFLIEGFVEICDHDKALEILRHLNCFETLKGSQIEKSTCDKIVN 460
            L+ M  RG +     Y+ +I+      D    + + + ++     KG Q+       ++ 
Sbjct: 262  LRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMD----EKGIQVPPHAFSLVIG 317

Query: 461  WLCEFGEVELGLDFLDHFKELGI--DLSQYCCLILGGFNWGKDDKNKAVRILSRIKEKGY 634
             LC+ G++  G    ++    G   +++ Y  LI G    G  +   A+R+L R+ ++G+
Sbjct: 318  GLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVED--AIRLLHRMIDEGF 375

Query: 635  FVDKDTCFKIIDGFSACGELEMAQNVVDQFRELGLEVSSLSYSSVIHGLIKAESFGEAEQ 814
              D  T   +++G    G +E A +     R  GL ++S+ YSS+I GL KA    EAE+
Sbjct: 376  KPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAER 435

Query: 815  VFDEMQILGHDPDVACCNSVIQGLSKVGKIERAMEISDYMKEQ--CFDLTLQSYIAIIEG 988
            +F+EM   G   D  C N++I   +K  K++ A+ +   M+E+  C D T+ +Y  ++ G
Sbjct: 436  LFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGC-DQTVYTYTILLSG 494

Query: 989  LLKAGNEEMAME 1024
            + K    E A++
Sbjct: 495  MFKEHRNEEALK 506