BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00010336
         (774 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006413743.1| hypothetical protein EUTSA_v10024251mg [Eutr...   241   3e-61
gb|AAZ08464.1| RNA polymerase II second largest subunit [Nymphae...   239   8e-61
ref|XP_006285577.1| hypothetical protein CARUB_v10007021mg [Caps...   238   1e-60
ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arab...   238   1e-60
gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanu...   237   3e-60
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...   237   4e-60
gb|AAY85216.1| RNA polymerase II second largest subunit [Hibbert...   237   4e-60
gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis p...   237   4e-60
gb|AAY89340.1| RNA polymerase II second largest subunit [Berberi...   237   4e-60
gb|AAY89339.1| RNA polymerase II second largest subunit [Berberi...   237   4e-60
gb|AAY85203.1| RNA polymerase II second largest subunit [Dicentr...   237   4e-60
gb|AAY85208.1| RNA polymerase II second largest subunit [Euptele...   237   4e-60
gb|AAY85190.1| RNA polymerase II second largest subunit [Aextoxi...   237   4e-60
gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japo...   236   5e-60
gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptid...   236   5e-60
gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriode...   236   6e-60
gb|AAY85200.1| RNA polymerase II second largest subunit [Coriari...   236   6e-60
ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Ar...   236   8e-60
ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II su...   236   8e-60
ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago trunca...   236   8e-60

>ref|XP_006413743.1| hypothetical protein EUTSA_v10024251mg [Eutrema salsugineum]
           gi|557114913|gb|ESQ55196.1| hypothetical protein
           EUTSA_v10024251mg [Eutrema salsugineum]
          Length = 1188

 Score =  241 bits (614), Expect = 3e-61
 Identities = 121/168 (72%), Positives = 137/168 (81%)
 Frame = -2

Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327
           C D+  T +   ++ ++E            F   + QVALDYIGKRG+TVGVTKEK  KY
Sbjct: 294 CYDFADTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGATVGVTKEKRIKY 343

Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147
           AKDILQKEMLPHVGIGE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP
Sbjct: 344 AKDILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 403

Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3
           LLGGLFRMLF KLTRD++SY+QKCVD+G+E NLQ+AIKAKTI+SGLKY
Sbjct: 404 LLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKY 451


>gb|AAZ08464.1| RNA polymerase II second largest subunit [Nymphaea colorata]
          Length = 431

 Score =  239 bits (610), Expect = 8e-61
 Identities = 119/168 (70%), Positives = 138/168 (82%)
 Frame = -2

Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327
           C D++ T +   ++ ++E            F   + QVALDYIGKRGSTVGVTKEK  KY
Sbjct: 189 CYDFSDTQMMEMLRPSLEEA----------FVIQNQQVALDYIGKRGSTVGVTKEKRIKY 238

Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147
           AK+ILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP
Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298

Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3
           LLGGLFRMLF KLTRD+K+Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY
Sbjct: 299 LLGGLFRMLFRKLTRDVKTYVQKCVDNGKDVNLQFAIKAKTITSGLKY 346


>ref|XP_006285577.1| hypothetical protein CARUB_v10007021mg [Capsella rubella]
           gi|482554282|gb|EOA18475.1| hypothetical protein
           CARUB_v10007021mg [Capsella rubella]
          Length = 1188

 Score =  238 bits (608), Expect = 1e-60
 Identities = 119/168 (70%), Positives = 136/168 (80%)
 Frame = -2

Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327
           C D+  T +   ++ ++E            F   + QVALDYIGKRG+TVGVTKEK  KY
Sbjct: 294 CYDFADTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGATVGVTKEKRIKY 343

Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147
           AKDILQKEMLPHVG+GE  E KKAYYF YI+HRLLLCALGRRPEDDRDHYGNKRLDLAGP
Sbjct: 344 AKDILQKEMLPHVGVGEHCETKKAYYFGYIVHRLLLCALGRRPEDDRDHYGNKRLDLAGP 403

Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3
           LLGGLFRMLF KLTRD++SY+QKCVD+G+E NLQ+AIKAKTI+SGLKY
Sbjct: 404 LLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKY 451


>ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
           lyrata] gi|297313665|gb|EFH44088.1| hypothetical protein
           ARALYDRAFT_492703 [Arabidopsis lyrata subsp. lyrata]
          Length = 1188

 Score =  238 bits (608), Expect = 1e-60
 Identities = 120/168 (71%), Positives = 137/168 (81%)
 Frame = -2

Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327
           C D+  T +   ++ ++E  +  V+            VALDYIGKRG+TVGVTKEK  KY
Sbjct: 294 CYDFADTQMMELLRPSLEEAF--VIQNQL--------VALDYIGKRGATVGVTKEKRIKY 343

Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147
           AKDILQKEMLPHVGIGE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP
Sbjct: 344 AKDILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 403

Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3
           LLGGLFRMLF KLTRD++SY+QKCVD+G+E NLQ+AIKAKTI+SGLKY
Sbjct: 404 LLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKY 451


>gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
          Length = 923

 Score =  237 bits (605), Expect = 3e-60
 Identities = 120/165 (72%), Positives = 134/165 (81%), Gaps = 10/165 (6%)
 Frame = -2

Query: 467 KAAIEHIYRSVLDRDFF----------FTDLHIQVALDYIGKRGSTVGVTKEKHTKYAKD 318
           K  +EHI    LD              F   + QVALDYIGKRGSTVGVT+EK  KYAK+
Sbjct: 154 KDILEHICYDFLDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKE 213

Query: 317 ILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLG 138
           ILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLG
Sbjct: 214 ILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLG 273

Query: 137 GLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3
           GLFRMLF KLTRD+++Y+QKCVD+G+E NLQ+AIKAKTI+SGLKY
Sbjct: 274 GLFRMLFRKLTRDVRAYVQKCVDNGKEVNLQFAIKAKTITSGLKY 318


>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
           vinifera] gi|147841183|emb|CAN72948.1| hypothetical
           protein VITISV_033708 [Vitis vinifera]
           gi|302143287|emb|CBI21848.3| unnamed protein product
           [Vitis vinifera]
          Length = 1193

 Score =  237 bits (604), Expect = 4e-60
 Identities = 117/168 (69%), Positives = 138/168 (82%)
 Frame = -2

Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327
           C D++ T +   ++ ++E            F   + QVALDYIGKRGSTVGVT+EK  KY
Sbjct: 295 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGSTVGVTREKRIKY 344

Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147
           AK+ILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP
Sbjct: 345 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 404

Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3
           LLGGLFRMLF KLTRD+++Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY
Sbjct: 405 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 452


>gb|AAY85216.1| RNA polymerase II second largest subunit [Hibbertia scandens]
          Length = 873

 Score =  237 bits (604), Expect = 4e-60
 Identities = 117/168 (69%), Positives = 138/168 (82%)
 Frame = -2

Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327
           C D++ T +   ++ ++E            F   + QVALDYIGKRGSTVGVT+EK  KY
Sbjct: 189 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGSTVGVTREKRIKY 238

Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147
           AK+ILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP
Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298

Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3
           LLGGLFRMLF KLTRD+++Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY
Sbjct: 299 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 346


>gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis piasezkii]
          Length = 951

 Score =  237 bits (604), Expect = 4e-60
 Identities = 117/168 (69%), Positives = 138/168 (82%)
 Frame = -2

Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327
           C D++ T +   ++ ++E            F   + QVALDYIGKRGSTVGVT+EK  KY
Sbjct: 189 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGSTVGVTREKRIKY 238

Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147
           AK+ILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP
Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298

Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3
           LLGGLFRMLF KLTRD+++Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY
Sbjct: 299 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 346


>gb|AAY89340.1| RNA polymerase II second largest subunit [Berberidopsis beckleri]
          Length = 873

 Score =  237 bits (604), Expect = 4e-60
 Identities = 117/168 (69%), Positives = 138/168 (82%)
 Frame = -2

Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327
           C D++ T +   ++ ++E            F   + QVALDYIGKRGSTVGVT+EK  KY
Sbjct: 189 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGSTVGVTREKRIKY 238

Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147
           AK+ILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP
Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298

Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3
           LLGGLFRMLF KLTRD+++Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY
Sbjct: 299 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 346


>gb|AAY89339.1| RNA polymerase II second largest subunit [Berberidopsis corallina]
          Length = 853

 Score =  237 bits (604), Expect = 4e-60
 Identities = 117/168 (69%), Positives = 138/168 (82%)
 Frame = -2

Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327
           C D++ T +   ++ ++E            F   + QVALDYIGKRGSTVGVT+EK  KY
Sbjct: 189 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGSTVGVTREKRIKY 238

Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147
           AK+ILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP
Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298

Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3
           LLGGLFRMLF KLTRD+++Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY
Sbjct: 299 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 346


>gb|AAY85203.1| RNA polymerase II second largest subunit [Dicentra formosa]
          Length = 873

 Score =  237 bits (604), Expect = 4e-60
 Identities = 118/168 (70%), Positives = 137/168 (81%)
 Frame = -2

Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327
           C D++ T +   ++ ++E            F   + QVALDYIGKRGSTVGVTKEK  KY
Sbjct: 189 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGSTVGVTKEKRIKY 238

Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147
           A++ILQKEMLPHVGIGE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP
Sbjct: 239 AREILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298

Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3
           LLGGLFRMLF KLTRD++ Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY
Sbjct: 299 LLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKY 346


>gb|AAY85208.1| RNA polymerase II second largest subunit [Euptelea polyandra]
          Length = 874

 Score =  237 bits (604), Expect = 4e-60
 Identities = 117/168 (69%), Positives = 138/168 (82%)
 Frame = -2

Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327
           C D++ T +   ++ ++E            F   + QVALDYIGKRGSTVGVT+EK  KY
Sbjct: 189 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGSTVGVTREKRIKY 238

Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147
           AK+ILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP
Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298

Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3
           LLGGLFRMLF KLTRD+++Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY
Sbjct: 299 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 346


>gb|AAY85190.1| RNA polymerase II second largest subunit [Aextoxicon punctatum]
          Length = 873

 Score =  237 bits (604), Expect = 4e-60
 Identities = 117/168 (69%), Positives = 138/168 (82%)
 Frame = -2

Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327
           C D++ T +   ++ ++E            F   + QVALDYIGKRGSTVGVT+EK  KY
Sbjct: 189 CYDFSDTQMMELLRPSLEEA----------FVIQNHQVALDYIGKRGSTVGVTREKRIKY 238

Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147
           AK+ILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP
Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298

Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3
           LLGGLFRMLF KLTRD+++Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY
Sbjct: 299 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 346


>gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
          Length = 1218

 Score =  236 bits (603), Expect = 5e-60
 Identities = 118/168 (70%), Positives = 137/168 (81%)
 Frame = -2

Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327
           C D++ T +   ++ ++E            F   + QVALDYIGKRG+TVGVTKEK  KY
Sbjct: 323 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGATVGVTKEKRIKY 372

Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147
           AK+ILQKEMLPHVG+GEF E KKAYYF YIIHRLL+CALGRR EDDRDHYGNKRLDLAGP
Sbjct: 373 AKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGP 432

Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3
           LLGGLFRMLF KLTRD++SY+QKCVD+G+E NLQ+AIKAKTI+SGLKY
Sbjct: 433 LLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKY 480


>gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
           expressed [Oryza sativa Japonica Group]
           gi|125545063|gb|EAY91202.1| hypothetical protein
           OsI_12811 [Oryza sativa Indica Group]
          Length = 1222

 Score =  236 bits (603), Expect = 5e-60
 Identities = 118/168 (70%), Positives = 137/168 (81%)
 Frame = -2

Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327
           C D++ T +   ++ ++E            F   + QVALDYIGKRG+TVGVTKEK  KY
Sbjct: 327 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGATVGVTKEKRIKY 376

Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147
           AK+ILQKEMLPHVG+GEF E KKAYYF YIIHRLL+CALGRR EDDRDHYGNKRLDLAGP
Sbjct: 377 AKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGP 436

Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3
           LLGGLFRMLF KLTRD++SY+QKCVD+G+E NLQ+AIKAKTI+SGLKY
Sbjct: 437 LLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKY 484


>gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriodendron tulipifera]
          Length = 942

 Score =  236 bits (602), Expect = 6e-60
 Identities = 117/168 (69%), Positives = 136/168 (80%)
 Frame = -2

Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327
           C D++ T +   ++ ++E            F   + QVALDYIGKRG TVGVTKEK  KY
Sbjct: 181 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGQTVGVTKEKRIKY 230

Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147
           AK+ILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP
Sbjct: 231 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 290

Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3
           LLGGLFRMLF KLTRD++ Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY
Sbjct: 291 LLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKY 338


>gb|AAY85200.1| RNA polymerase II second largest subunit [Coriaria sarmentosa]
          Length = 952

 Score =  236 bits (602), Expect = 6e-60
 Identities = 117/168 (69%), Positives = 136/168 (80%)
 Frame = -2

Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327
           C D+  T +   ++ ++E            F   + QVALDYIGKRG+TVGVT+EK  KY
Sbjct: 189 CYDFADTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGATVGVTREKRIKY 238

Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147
           AK+ILQKEMLPHVG+GEF E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP
Sbjct: 239 AKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298

Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3
           LLGGLFRMLF KLTRD++ Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY
Sbjct: 299 LLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKY 346


>ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
           gi|21542437|sp|P38420.2|NRPB2_ARATH RecName:
           Full=DNA-directed RNA polymerase II subunit 2; AltName:
           Full=DNA-directed RNA polymerase II 135 kDa polypeptide;
           AltName: Full=DNA-directed RNA polymerase II subunit
           RPB2; Short=RNA polymerase II subunit 2; Short=RNA
           polymerase II subunit B2; AltName: Full=Protein EMBRYO
           DEFECTIVE 1989 gi|4455279|emb|CAB36815.1| DNA-directed
           RNA polymerase (EC 2.7.7.6) II second largest chain
           [Arabidopsis thaliana] gi|7268968|emb|CAB81278.1|
           DNA-directed RNA polymerase (EC 2.7.7.6) II second
           largest chain [Arabidopsis thaliana]
           gi|332659093|gb|AEE84493.1| DNA-directed RNA polymerase
           II subunit RPB2 [Arabidopsis thaliana]
          Length = 1188

 Score =  236 bits (601), Expect = 8e-60
 Identities = 119/168 (70%), Positives = 136/168 (80%)
 Frame = -2

Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327
           C D+  T +   ++ ++E  +  V+            VALDYIGKRG+TVGVTKEK  KY
Sbjct: 294 CYDFADTQMMELLRPSLEEAF--VIQNQL--------VALDYIGKRGATVGVTKEKRIKY 343

Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147
           A+DILQKEMLPHVGIGE  E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP
Sbjct: 344 ARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 403

Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3
           LLGGLFRMLF KLTRD++SY+QKCVD+G+E NLQ+AIKAKTI+SGLKY
Sbjct: 404 LLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKY 451


>ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
           [Cucumis sativus] gi|449479313|ref|XP_004155566.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB2-like [Cucumis sativus]
          Length = 1199

 Score =  236 bits (601), Expect = 8e-60
 Identities = 118/168 (70%), Positives = 136/168 (80%)
 Frame = -2

Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327
           C D++ T +   ++ ++E            F   + QVALDYIGKRGSTVGVTKEK  KY
Sbjct: 301 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGSTVGVTKEKRIKY 350

Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147
           AK+ILQKEMLPHVG+GEF E KKAYYF YIIHRLLLCALGRR EDDRDHYGNKRLDLAGP
Sbjct: 351 AKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 410

Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3
           LLGGLFRMLF KLTRD++ Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY
Sbjct: 411 LLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKY 458


>ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
           gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase
           [Medicago truncatula]
          Length = 1213

 Score =  236 bits (601), Expect = 8e-60
 Identities = 118/168 (70%), Positives = 135/168 (80%)
 Frame = -2

Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327
           C D+  T +   ++ ++E            F   + QVALDYIGKRGSTVGVTKEK  KY
Sbjct: 297 CYDFADTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGSTVGVTKEKRIKY 346

Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147
           AKDILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRR EDDRDHYGNKRLDLAGP
Sbjct: 347 AKDILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 406

Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3
           LLGGLFRMLF KLTRD++ Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY
Sbjct: 407 LLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKY 454