BLASTX nr result
ID: Ephedra26_contig00010336
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra26_contig00010336 (774 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_006413743.1| hypothetical protein EUTSA_v10024251mg [Eutr... 241 3e-61 gb|AAZ08464.1| RNA polymerase II second largest subunit [Nymphae... 239 8e-61 ref|XP_006285577.1| hypothetical protein CARUB_v10007021mg [Caps... 238 1e-60 ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arab... 238 1e-60 gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanu... 237 3e-60 ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su... 237 4e-60 gb|AAY85216.1| RNA polymerase II second largest subunit [Hibbert... 237 4e-60 gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis p... 237 4e-60 gb|AAY89340.1| RNA polymerase II second largest subunit [Berberi... 237 4e-60 gb|AAY89339.1| RNA polymerase II second largest subunit [Berberi... 237 4e-60 gb|AAY85203.1| RNA polymerase II second largest subunit [Dicentr... 237 4e-60 gb|AAY85208.1| RNA polymerase II second largest subunit [Euptele... 237 4e-60 gb|AAY85190.1| RNA polymerase II second largest subunit [Aextoxi... 237 4e-60 gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japo... 236 5e-60 gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptid... 236 5e-60 gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriode... 236 6e-60 gb|AAY85200.1| RNA polymerase II second largest subunit [Coriari... 236 6e-60 ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Ar... 236 8e-60 ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II su... 236 8e-60 ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago trunca... 236 8e-60 >ref|XP_006413743.1| hypothetical protein EUTSA_v10024251mg [Eutrema salsugineum] gi|557114913|gb|ESQ55196.1| hypothetical protein EUTSA_v10024251mg [Eutrema salsugineum] Length = 1188 Score = 241 bits (614), Expect = 3e-61 Identities = 121/168 (72%), Positives = 137/168 (81%) Frame = -2 Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327 C D+ T + ++ ++E F + QVALDYIGKRG+TVGVTKEK KY Sbjct: 294 CYDFADTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGATVGVTKEKRIKY 343 Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147 AKDILQKEMLPHVGIGE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP Sbjct: 344 AKDILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 403 Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3 LLGGLFRMLF KLTRD++SY+QKCVD+G+E NLQ+AIKAKTI+SGLKY Sbjct: 404 LLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKY 451 >gb|AAZ08464.1| RNA polymerase II second largest subunit [Nymphaea colorata] Length = 431 Score = 239 bits (610), Expect = 8e-61 Identities = 119/168 (70%), Positives = 138/168 (82%) Frame = -2 Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327 C D++ T + ++ ++E F + QVALDYIGKRGSTVGVTKEK KY Sbjct: 189 CYDFSDTQMMEMLRPSLEEA----------FVIQNQQVALDYIGKRGSTVGVTKEKRIKY 238 Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147 AK+ILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298 Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3 LLGGLFRMLF KLTRD+K+Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY Sbjct: 299 LLGGLFRMLFRKLTRDVKTYVQKCVDNGKDVNLQFAIKAKTITSGLKY 346 >ref|XP_006285577.1| hypothetical protein CARUB_v10007021mg [Capsella rubella] gi|482554282|gb|EOA18475.1| hypothetical protein CARUB_v10007021mg [Capsella rubella] Length = 1188 Score = 238 bits (608), Expect = 1e-60 Identities = 119/168 (70%), Positives = 136/168 (80%) Frame = -2 Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327 C D+ T + ++ ++E F + QVALDYIGKRG+TVGVTKEK KY Sbjct: 294 CYDFADTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGATVGVTKEKRIKY 343 Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147 AKDILQKEMLPHVG+GE E KKAYYF YI+HRLLLCALGRRPEDDRDHYGNKRLDLAGP Sbjct: 344 AKDILQKEMLPHVGVGEHCETKKAYYFGYIVHRLLLCALGRRPEDDRDHYGNKRLDLAGP 403 Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3 LLGGLFRMLF KLTRD++SY+QKCVD+G+E NLQ+AIKAKTI+SGLKY Sbjct: 404 LLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKY 451 >ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp. lyrata] gi|297313665|gb|EFH44088.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp. lyrata] Length = 1188 Score = 238 bits (608), Expect = 1e-60 Identities = 120/168 (71%), Positives = 137/168 (81%) Frame = -2 Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327 C D+ T + ++ ++E + V+ VALDYIGKRG+TVGVTKEK KY Sbjct: 294 CYDFADTQMMELLRPSLEEAF--VIQNQL--------VALDYIGKRGATVGVTKEKRIKY 343 Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147 AKDILQKEMLPHVGIGE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP Sbjct: 344 AKDILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 403 Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3 LLGGLFRMLF KLTRD++SY+QKCVD+G+E NLQ+AIKAKTI+SGLKY Sbjct: 404 LLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKY 451 >gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis] Length = 923 Score = 237 bits (605), Expect = 3e-60 Identities = 120/165 (72%), Positives = 134/165 (81%), Gaps = 10/165 (6%) Frame = -2 Query: 467 KAAIEHIYRSVLDRDFF----------FTDLHIQVALDYIGKRGSTVGVTKEKHTKYAKD 318 K +EHI LD F + QVALDYIGKRGSTVGVT+EK KYAK+ Sbjct: 154 KDILEHICYDFLDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKE 213 Query: 317 ILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLG 138 ILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLG Sbjct: 214 ILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLG 273 Query: 137 GLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3 GLFRMLF KLTRD+++Y+QKCVD+G+E NLQ+AIKAKTI+SGLKY Sbjct: 274 GLFRMLFRKLTRDVRAYVQKCVDNGKEVNLQFAIKAKTITSGLKY 318 >ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis vinifera] gi|147841183|emb|CAN72948.1| hypothetical protein VITISV_033708 [Vitis vinifera] gi|302143287|emb|CBI21848.3| unnamed protein product [Vitis vinifera] Length = 1193 Score = 237 bits (604), Expect = 4e-60 Identities = 117/168 (69%), Positives = 138/168 (82%) Frame = -2 Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327 C D++ T + ++ ++E F + QVALDYIGKRGSTVGVT+EK KY Sbjct: 295 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGSTVGVTREKRIKY 344 Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147 AK+ILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP Sbjct: 345 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 404 Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3 LLGGLFRMLF KLTRD+++Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY Sbjct: 405 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 452 >gb|AAY85216.1| RNA polymerase II second largest subunit [Hibbertia scandens] Length = 873 Score = 237 bits (604), Expect = 4e-60 Identities = 117/168 (69%), Positives = 138/168 (82%) Frame = -2 Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327 C D++ T + ++ ++E F + QVALDYIGKRGSTVGVT+EK KY Sbjct: 189 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGSTVGVTREKRIKY 238 Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147 AK+ILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298 Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3 LLGGLFRMLF KLTRD+++Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY Sbjct: 299 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 346 >gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis piasezkii] Length = 951 Score = 237 bits (604), Expect = 4e-60 Identities = 117/168 (69%), Positives = 138/168 (82%) Frame = -2 Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327 C D++ T + ++ ++E F + QVALDYIGKRGSTVGVT+EK KY Sbjct: 189 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGSTVGVTREKRIKY 238 Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147 AK+ILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298 Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3 LLGGLFRMLF KLTRD+++Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY Sbjct: 299 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 346 >gb|AAY89340.1| RNA polymerase II second largest subunit [Berberidopsis beckleri] Length = 873 Score = 237 bits (604), Expect = 4e-60 Identities = 117/168 (69%), Positives = 138/168 (82%) Frame = -2 Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327 C D++ T + ++ ++E F + QVALDYIGKRGSTVGVT+EK KY Sbjct: 189 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGSTVGVTREKRIKY 238 Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147 AK+ILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298 Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3 LLGGLFRMLF KLTRD+++Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY Sbjct: 299 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 346 >gb|AAY89339.1| RNA polymerase II second largest subunit [Berberidopsis corallina] Length = 853 Score = 237 bits (604), Expect = 4e-60 Identities = 117/168 (69%), Positives = 138/168 (82%) Frame = -2 Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327 C D++ T + ++ ++E F + QVALDYIGKRGSTVGVT+EK KY Sbjct: 189 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGSTVGVTREKRIKY 238 Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147 AK+ILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298 Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3 LLGGLFRMLF KLTRD+++Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY Sbjct: 299 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 346 >gb|AAY85203.1| RNA polymerase II second largest subunit [Dicentra formosa] Length = 873 Score = 237 bits (604), Expect = 4e-60 Identities = 118/168 (70%), Positives = 137/168 (81%) Frame = -2 Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327 C D++ T + ++ ++E F + QVALDYIGKRGSTVGVTKEK KY Sbjct: 189 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGSTVGVTKEKRIKY 238 Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147 A++ILQKEMLPHVGIGE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP Sbjct: 239 AREILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298 Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3 LLGGLFRMLF KLTRD++ Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY Sbjct: 299 LLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKY 346 >gb|AAY85208.1| RNA polymerase II second largest subunit [Euptelea polyandra] Length = 874 Score = 237 bits (604), Expect = 4e-60 Identities = 117/168 (69%), Positives = 138/168 (82%) Frame = -2 Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327 C D++ T + ++ ++E F + QVALDYIGKRGSTVGVT+EK KY Sbjct: 189 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGSTVGVTREKRIKY 238 Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147 AK+ILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298 Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3 LLGGLFRMLF KLTRD+++Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY Sbjct: 299 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 346 >gb|AAY85190.1| RNA polymerase II second largest subunit [Aextoxicon punctatum] Length = 873 Score = 237 bits (604), Expect = 4e-60 Identities = 117/168 (69%), Positives = 138/168 (82%) Frame = -2 Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327 C D++ T + ++ ++E F + QVALDYIGKRGSTVGVT+EK KY Sbjct: 189 CYDFSDTQMMELLRPSLEEA----------FVIQNHQVALDYIGKRGSTVGVTREKRIKY 238 Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147 AK+ILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP Sbjct: 239 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298 Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3 LLGGLFRMLF KLTRD+++Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY Sbjct: 299 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 346 >gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group] Length = 1218 Score = 236 bits (603), Expect = 5e-60 Identities = 118/168 (70%), Positives = 137/168 (81%) Frame = -2 Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327 C D++ T + ++ ++E F + QVALDYIGKRG+TVGVTKEK KY Sbjct: 323 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGATVGVTKEKRIKY 372 Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147 AK+ILQKEMLPHVG+GEF E KKAYYF YIIHRLL+CALGRR EDDRDHYGNKRLDLAGP Sbjct: 373 AKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGP 432 Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3 LLGGLFRMLF KLTRD++SY+QKCVD+G+E NLQ+AIKAKTI+SGLKY Sbjct: 433 LLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKY 480 >gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed [Oryza sativa Japonica Group] gi|125545063|gb|EAY91202.1| hypothetical protein OsI_12811 [Oryza sativa Indica Group] Length = 1222 Score = 236 bits (603), Expect = 5e-60 Identities = 118/168 (70%), Positives = 137/168 (81%) Frame = -2 Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327 C D++ T + ++ ++E F + QVALDYIGKRG+TVGVTKEK KY Sbjct: 327 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGATVGVTKEKRIKY 376 Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147 AK+ILQKEMLPHVG+GEF E KKAYYF YIIHRLL+CALGRR EDDRDHYGNKRLDLAGP Sbjct: 377 AKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGP 436 Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3 LLGGLFRMLF KLTRD++SY+QKCVD+G+E NLQ+AIKAKTI+SGLKY Sbjct: 437 LLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKY 484 >gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriodendron tulipifera] Length = 942 Score = 236 bits (602), Expect = 6e-60 Identities = 117/168 (69%), Positives = 136/168 (80%) Frame = -2 Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327 C D++ T + ++ ++E F + QVALDYIGKRG TVGVTKEK KY Sbjct: 181 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGQTVGVTKEKRIKY 230 Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147 AK+ILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP Sbjct: 231 AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 290 Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3 LLGGLFRMLF KLTRD++ Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY Sbjct: 291 LLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKY 338 >gb|AAY85200.1| RNA polymerase II second largest subunit [Coriaria sarmentosa] Length = 952 Score = 236 bits (602), Expect = 6e-60 Identities = 117/168 (69%), Positives = 136/168 (80%) Frame = -2 Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327 C D+ T + ++ ++E F + QVALDYIGKRG+TVGVT+EK KY Sbjct: 189 CYDFADTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGATVGVTREKRIKY 238 Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147 AK+ILQKEMLPHVG+GEF E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP Sbjct: 239 AKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 298 Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3 LLGGLFRMLF KLTRD++ Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY Sbjct: 299 LLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKY 346 >ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana] gi|21542437|sp|P38420.2|NRPB2_ARATH RecName: Full=DNA-directed RNA polymerase II subunit 2; AltName: Full=DNA-directed RNA polymerase II 135 kDa polypeptide; AltName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA polymerase II subunit 2; Short=RNA polymerase II subunit B2; AltName: Full=Protein EMBRYO DEFECTIVE 1989 gi|4455279|emb|CAB36815.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain [Arabidopsis thaliana] gi|7268968|emb|CAB81278.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain [Arabidopsis thaliana] gi|332659093|gb|AEE84493.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana] Length = 1188 Score = 236 bits (601), Expect = 8e-60 Identities = 119/168 (70%), Positives = 136/168 (80%) Frame = -2 Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327 C D+ T + ++ ++E + V+ VALDYIGKRG+TVGVTKEK KY Sbjct: 294 CYDFADTQMMELLRPSLEEAF--VIQNQL--------VALDYIGKRGATVGVTKEKRIKY 343 Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147 A+DILQKEMLPHVGIGE E KKAYYF YIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP Sbjct: 344 ARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 403 Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3 LLGGLFRMLF KLTRD++SY+QKCVD+G+E NLQ+AIKAKTI+SGLKY Sbjct: 404 LLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKY 451 >ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis sativus] gi|449479313|ref|XP_004155566.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis sativus] Length = 1199 Score = 236 bits (601), Expect = 8e-60 Identities = 118/168 (70%), Positives = 136/168 (80%) Frame = -2 Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327 C D++ T + ++ ++E F + QVALDYIGKRGSTVGVTKEK KY Sbjct: 301 CYDFSDTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGSTVGVTKEKRIKY 350 Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147 AK+ILQKEMLPHVG+GEF E KKAYYF YIIHRLLLCALGRR EDDRDHYGNKRLDLAGP Sbjct: 351 AKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 410 Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3 LLGGLFRMLF KLTRD++ Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY Sbjct: 411 LLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKY 458 >ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula] gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase [Medicago truncatula] Length = 1213 Score = 236 bits (601), Expect = 8e-60 Identities = 118/168 (70%), Positives = 135/168 (80%) Frame = -2 Query: 506 CRDYTKTPVQFFVKAAIEHIYRSVLDRDFFFTDLHIQVALDYIGKRGSTVGVTKEKHTKY 327 C D+ T + ++ ++E F + QVALDYIGKRGSTVGVTKEK KY Sbjct: 297 CYDFADTQMMELLRPSLEEA----------FVIQNQQVALDYIGKRGSTVGVTKEKRIKY 346 Query: 326 AKDILQKEMLPHVGIGEFSEIKKAYYFVYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGP 147 AKDILQKEMLPHVG+GE+ E KKAYYF YIIHRLLLCALGRR EDDRDHYGNKRLDLAGP Sbjct: 347 AKDILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 406 Query: 146 LLGGLFRMLFCKLTRDMKSYLQKCVDSGREDNLQYAIKAKTISSGLKY 3 LLGGLFRMLF KLTRD++ Y+QKCVD+G++ NLQ+AIKAKTI+SGLKY Sbjct: 407 LLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKY 454