BLASTX nr result
ID: Ephedra26_contig00010303
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00010303
(1722 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,... 226 3e-56
ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,... 226 3e-56
gb|EOY23460.1| Sigma factor E isoform 1 [Theobroma cacao] gi|508... 224 7e-56
ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ... 224 1e-55
ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citr... 223 3e-55
gb|EXB72455.1| RNA polymerase sigma factor rpoD [Morus notabilis] 222 4e-55
ref|XP_006578934.1| PREDICTED: RNA polymerase sigma factor sigE,... 220 1e-54
ref|XP_006581623.1| PREDICTED: RNA polymerase sigma factor sigE,... 219 4e-54
ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,... 218 6e-54
ref|NP_001276145.1| RNA polymerase sigma factor sigE, chloroplas... 218 8e-54
gb|EPS69584.1| hypothetical protein M569_05182, partial [Genlise... 217 1e-53
ref|XP_002333134.1| predicted protein [Populus trichocarpa] 217 1e-53
ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,... 216 2e-53
ref|XP_006376620.1| RNA polymerase sigma subunit SigE family pro... 216 2e-53
ref|XP_006287402.1| hypothetical protein CARUB_v10000608mg, part... 216 2e-53
gb|EMJ20209.1| hypothetical protein PRUPE_ppa004259mg [Prunus pe... 216 2e-53
dbj|BAJ34205.1| unnamed protein product [Thellungiella halophila] 215 4e-53
ref|NP_197800.1| RNA polymerase sigma factor 5 [Arabidopsis thal... 213 2e-52
ref|XP_002874170.1| hypothetical protein ARALYDRAFT_489269 [Arab... 213 2e-52
ref|XP_004502613.1| PREDICTED: RNA polymerase sigma factor sigE,... 212 4e-52
>ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,
chloroplastic/mitochondrial-like [Solanum tuberosum]
Length = 516
Score = 226 bits (575), Expect = 3e-56
Identities = 142/387 (36%), Positives = 215/387 (55%), Gaps = 4/387 (1%)
Frame = -2
Query: 1400 NGSRRQKRLSLDTRRALNLQKIENSKKGSKVQLGRKKRENNENAIDIDFWDKEIDKLIKE 1221
N + KRL+LD R AL L+ E S + RK +E+ E D++IDKL++E
Sbjct: 150 NRRKTSKRLNLDQRIAL-LKNKEGEMVASSER--RKLKEDTE--------DEKIDKLVRE 198
Query: 1220 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1041
YS SLDW + VL SEH WL +LMQPMK + ++ L+ +GREP D EVA
Sbjct: 199 YSGATDLASLDWKKMKIPPVLPSSEHVWLFKLMQPMKAILQVKENLQNDLGREPTDGEVA 258
Query: 1040 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 867
+A + +R+ ++ G+AARNKLI+ NL+LVL+ + Y Q+F+N F DLC
Sbjct: 259 EATNMDASELRKKLEVGRAARNKLIKHNLRLVLFVMNKYFQDFANGS------RFQDLCQ 312
Query: 866 AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNIAXXXXXXXXXX 687
AG++GL+ A+DRF+P RK R STY FWIRH + +++ S +P +
Sbjct: 313 AGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKVPFGLESIRVEIQKAK 372
Query: 686 XXXRSLYGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDNG 507
R PT EE+ + L PE++ +V K + +++ N + E + NG
Sbjct: 373 LELLFELQRIPTDEEIIRRVGLSPERYHEVMKVSKPVSSLHARNKTTQEE------LING 426
Query: 506 SYPIK--ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGI 333
+ + D ++ +DD+L SL P+E +I++RYG +GK +++L E A L I
Sbjct: 427 ITDVDGVDGDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNI 486
Query: 332 SNEMVRKEENKAFSKLRDPSRIDFLKQ 252
S EMVRK E KA KL+ P+R+D++++
Sbjct: 487 SREMVRKHEVKALMKLKHPTRVDYVRR 513
>ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,
chloroplastic/mitochondrial-like isoform 1 [Solanum
lycopersicum]
Length = 516
Score = 226 bits (575), Expect = 3e-56
Identities = 141/387 (36%), Positives = 216/387 (55%), Gaps = 4/387 (1%)
Frame = -2
Query: 1400 NGSRRQKRLSLDTRRALNLQKIENSKKGSKVQLGRKKRENNENAIDIDFWDKEIDKLIKE 1221
N ++ KRL+LD R AL ++N K K+ ++R+ NE D D++IDKL++E
Sbjct: 150 NRRKKSKRLNLDQRIAL----LKN--KEGKMLASSERRKLNE-----DTEDEKIDKLVRE 198
Query: 1220 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1041
YS SLDW + VL SEH WL +LMQPMK + ++ L+ +GREP D EVA
Sbjct: 199 YSGATDLASLDWKKMKIPPVLPSSEHTWLFKLMQPMKAILQVKENLQNDLGREPTDGEVA 258
Query: 1040 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 867
+A + +R+ ++AG+AARNKLI+ NL+LVL+ + Y Q+F+N F DLC
Sbjct: 259 EATNMDASELRKKLEAGRAARNKLIKHNLRLVLFVMNKYFQDFANAS------RFQDLCQ 312
Query: 866 AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNIAXXXXXXXXXX 687
AG++GL+ A+DRF+P RK R STY FWIRH + + + S +P +
Sbjct: 313 AGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRYMTTSSFTKVPFGLESIRVEIQKAK 372
Query: 686 XXXRSLYGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDNG 507
R PT +E+ + PE++ +V K + ++ N + E + NG
Sbjct: 373 LELLFELQRIPTDDEIIKRVGFSPERYHEVMKVSKPIFSLHARNKTTQEE------LING 426
Query: 506 SYPIK--ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGI 333
+ + D ++ +DD+L SL P+E +I++RYG +GK +++L E A L I
Sbjct: 427 ITDVDGVDGDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNI 486
Query: 332 SNEMVRKEENKAFSKLRDPSRIDFLKQ 252
S EMVRK E KA KL+ P+R+D++++
Sbjct: 487 SREMVRKHEVKALMKLKHPTRVDYVRR 513
>gb|EOY23460.1| Sigma factor E isoform 1 [Theobroma cacao]
gi|508776205|gb|EOY23461.1| Sigma factor E isoform 1
[Theobroma cacao]
Length = 516
Score = 224 bits (572), Expect = 7e-56
Identities = 137/385 (35%), Positives = 215/385 (55%), Gaps = 2/385 (0%)
Frame = -2
Query: 1400 NGSRRQKRLSLDTRRALNLQKIENSKKGSKVQLGRKKRENNENAIDIDFWDKEIDKLIKE 1221
N + R KRLSLD R AL +N ++ V + RKK NE+ ++ID+L+++
Sbjct: 151 NQTNRIKRLSLDNRIALK----KNREEKPVVSVRRKKSSENES--------EKIDRLVRD 198
Query: 1220 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1041
YS SLDW + VL EH WL +LMQPMK + ++ L+ +GR+P + E+A
Sbjct: 199 YSASTDLVSLDWRKMKIPPVLPSIEHTWLFKLMQPMKALLQAKENLQKDLGRDPTEDELA 258
Query: 1040 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 867
+A + VR+H++ GQAARNKLI+ NL+LVL+ + Y Q+F+N F DLC
Sbjct: 259 EATNMSAAQVRKHLEVGQAARNKLIKHNLRLVLFSINKYFQDFANGP------RFQDLCQ 312
Query: 866 AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNIAXXXXXXXXXX 687
AG++GL+ A+DRF+P R+ R STY+ FWIRH + +++ S + +
Sbjct: 313 AGVKGLITAIDRFEPRRRFRLSTYSLFWIRHAIIRSMTLSSFTRVSFGLESVRVEIQRAK 372
Query: 686 XXXRSLYGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDNG 507
R+PT+EE+ + + PE++++V + + ++ + + E +G
Sbjct: 373 LELLFELHREPTEEEIIKKVGISPERYQEVMRASKPVASLHSRHSVTQEEFINGITDIDG 432
Query: 506 SYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 327
P RL +DD+L SL P+E +I++RYG +GK +++L E A L IS
Sbjct: 433 VGGDHRRQPALLRLA----LDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 488
Query: 326 EMVRKEENKAFSKLRDPSRIDFLKQ 252
EMVRK E KA KL+ P+R+D+L++
Sbjct: 489 EMVRKHEVKALMKLKHPARVDYLRR 513
>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|302143685|emb|CBI22546.3| unnamed protein product
[Vitis vinifera]
Length = 518
Score = 224 bits (570), Expect = 1e-55
Identities = 139/385 (36%), Positives = 213/385 (55%), Gaps = 4/385 (1%)
Frame = -2
Query: 1394 SRRQKRLSLDTRRALNLQKIENSKKGSKVQLGRKKRENNENAIDIDFWDKEIDKLIKEYS 1215
+++ KRLSL+ R AL+ K++ K + +Q R + +EN ID L++EYS
Sbjct: 155 NKKPKRLSLEKRIALS--KMKQEKAVASIQKKRDSKNEDEN----------IDVLVREYS 202
Query: 1214 MPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVAKA 1035
SLDW + VL PSEH WL +LMQPMK E + L+ +GREP D E+A+A
Sbjct: 203 ASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGLLEVKDNLQKDLGREPTDGELAEA 262
Query: 1034 LRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCNAG 861
+ + VRRH++ GQAARNKLI+ NL+LVL+ + Y Q F+N +F DLC AG
Sbjct: 263 MSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKYFQEFANGP------KFQDLCQAG 316
Query: 860 LQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNIAXXXXXXXXXXXX 681
++GL+ A+DRF+P R R STY FWIRH + +++ S + +
Sbjct: 317 VKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRVSFGLESVRVEIQRAKLE 376
Query: 680 XRSLYGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDNGSY 501
R PT+EE+ + + PE++ +V + + ++ + + E NG
Sbjct: 377 LLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEE------YINGIT 430
Query: 500 PIK--ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 327
++ D ++ +DD+L SL P+E ++++RYG +GK +++L E A L IS
Sbjct: 431 DVEGVGGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLGEIAGNLSISR 490
Query: 326 EMVRKEENKAFSKLRDPSRIDFLKQ 252
EMVRK E KA KL+ P+R+D+L+Q
Sbjct: 491 EMVRKHEVKALMKLKHPARVDYLRQ 515
>ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citrus clementina]
gi|567858878|ref|XP_006422122.1| hypothetical protein
CICLE_v10004760mg [Citrus clementina]
gi|568874930|ref|XP_006490565.1| PREDICTED: RNA
polymerase sigma factor sigE,
chloroplastic/mitochondrial-like isoform X1 [Citrus
sinensis] gi|568874932|ref|XP_006490566.1| PREDICTED: RNA
polymerase sigma factor sigE,
chloroplastic/mitochondrial-like isoform X2 [Citrus
sinensis] gi|568874934|ref|XP_006490567.1| PREDICTED: RNA
polymerase sigma factor sigE,
chloroplastic/mitochondrial-like isoform X3 [Citrus
sinensis] gi|557523994|gb|ESR35361.1| hypothetical
protein CICLE_v10004760mg [Citrus clementina]
gi|557523995|gb|ESR35362.1| hypothetical protein
CICLE_v10004760mg [Citrus clementina]
Length = 513
Score = 223 bits (567), Expect = 3e-55
Identities = 136/387 (35%), Positives = 217/387 (56%), Gaps = 4/387 (1%)
Frame = -2
Query: 1400 NGSRRQKRLSLDTRRALNLQKIENSKKGSKVQLGRKKRENNENAIDIDFWDKEIDKLIKE 1221
N +R KRLSLD R + L+K E+ K +K + K E+ ++I+KL++E
Sbjct: 149 NQVKRPKRLSLDKR--IELRKNEDEKVVTKTRKTDSKDEH-----------EKIEKLVRE 195
Query: 1220 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1041
YS SLDW + VL +EH WL +LMQPMK + + +++L+ +GREP D+E+A
Sbjct: 196 YSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVELA 255
Query: 1040 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 867
+A + V++ ++ G+AARNKLI+ NL+LVL+ + Y Q+F+N F DLC
Sbjct: 256 EATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGP------RFQDLCQ 309
Query: 866 AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNIAXXXXXXXXXX 687
AG++GL+ A+DRF+P R+ R STY FWIRH + +++ S +P +
Sbjct: 310 AGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESVRGEIQRAK 369
Query: 686 XXXRSLYGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDNG 507
R PT EE+ + + PE++++V K + ++ + + E NG
Sbjct: 370 LELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEE------FING 423
Query: 506 SYPIK--ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGI 333
+ EN+ ++ +DD+L SL P+E +I++R+G +GK +++L E A L I
Sbjct: 424 ITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNI 483
Query: 332 SNEMVRKEENKAFSKLRDPSRIDFLKQ 252
S EMVRK E K KL+ P+R+D+L+Q
Sbjct: 484 SREMVRKHEVKGLMKLKHPTRVDYLRQ 510
>gb|EXB72455.1| RNA polymerase sigma factor rpoD [Morus notabilis]
Length = 517
Score = 222 bits (565), Expect = 4e-55
Identities = 140/386 (36%), Positives = 222/386 (57%), Gaps = 3/386 (0%)
Frame = -2
Query: 1400 NGSRRQKRLSLDTRRALNLQKIENSKKGSKVQLGRKKREN-NENAIDIDFWDKEIDKLIK 1224
N ++ KRLSL R L K EN V L RK+RE+ NE +++I+KL++
Sbjct: 151 NRKKKAKRLSLHKRVELKRDKEENVA----VVLVRKRRESLNE--------EEKIEKLVR 198
Query: 1223 EYSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEV 1044
EYS SLDW + VL SEH WL +LMQP+K + + L+ +GREP + E+
Sbjct: 199 EYSASTDLVSLDWKKMKIPPVLPSSEHTWLFKLMQPLKQLFQVGEDLQKTLGREPTENEL 258
Query: 1043 AKALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLC 870
A+A + + V+RH++AG+AARNKLI+ NL+LVL+ + Y Q+F+N +F DLC
Sbjct: 259 AEATNISVVQVKRHLEAGRAARNKLIKHNLRLVLFVMNKYFQDFTNGP------KFQDLC 312
Query: 869 NAGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNIAXXXXXXXXX 690
AG++GL+ A+DRF+P R+ R STY FWIRH + +++ S + +
Sbjct: 313 QAGVRGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVSFGLESVRAEIQKA 372
Query: 689 XXXXRSLYGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDN 510
R PT+EE+ + + PE++ +V + + +++ ++ + E + +
Sbjct: 373 KIELTFELKRLPTEEEIIEKVGISPERYHEVMRASKPVISLNSRHVTTQEEFINAITDVD 432
Query: 509 GSYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGIS 330
G + +D P L ++ +DD+L SL P+E +I++RYG +GK +++L E A L IS
Sbjct: 433 G---VDGDDRRKPAL-LRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNIS 488
Query: 329 NEMVRKEENKAFSKLRDPSRIDFLKQ 252
EMVRK E KA KL+ P+R+D+L++
Sbjct: 489 REMVRKHEVKALMKLKHPARVDYLRR 514
>ref|XP_006578934.1| PREDICTED: RNA polymerase sigma factor sigE,
chloroplastic/mitochondrial-like [Glycine max]
Length = 509
Score = 220 bits (561), Expect = 1e-54
Identities = 139/383 (36%), Positives = 216/383 (56%)
Frame = -2
Query: 1400 NGSRRQKRLSLDTRRALNLQKIENSKKGSKVQLGRKKRENNENAIDIDFWDKEIDKLIKE 1221
N +++ KRL+LD R +L +N+K+G +V RKKR N N I+ +I++LI+E
Sbjct: 144 NKNKKAKRLTLDQRISL-----KNNKRGDEVIPTRKKR-NFRNRIE------KIEELIRE 191
Query: 1220 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1041
YS+ S+DW + VL SEH WL +LMQPMK + ++ L+ + REP D E+A
Sbjct: 192 YSVSNDFISMDWKRMRIPPVLSSSEHAWLFKLMQPMKALLQVKEDLQKELAREPADGELA 251
Query: 1040 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEVYRQNFSNKKLGDVTLEFSDLCNAG 861
A + + V++ ID GQAARNKLI+ NL+LVL+ V + F++ G F DLC AG
Sbjct: 252 DATNMSITQVKKAIDVGQAARNKLIKHNLRLVLF-VINKYFTDFASGP---RFQDLCQAG 307
Query: 860 LQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNIAXXXXXXXXXXXX 681
++GL+ A+DRF+P R+ R STY+ FWIRH + +++ S +P +
Sbjct: 308 VKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSSFIRVPFGLESVRAEIQKAKTE 367
Query: 680 XRSLYGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDNGSY 501
R PT+EE+ + + PE++ + K + +++ + + E D+G
Sbjct: 368 LTFKLQRSPTEEEIIERVHISPERYHDIIKASKSILSLNSRHTTTQEEFINGIVDDDGVN 427
Query: 500 PIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISNEM 321
P RL +DD+L SL P+E +I++R+G +GK +++L E A L IS EM
Sbjct: 428 GDNRKQPALLRLA----LDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREM 483
Query: 320 VRKEENKAFSKLRDPSRIDFLKQ 252
VRK E KA KL +R+D+L++
Sbjct: 484 VRKHEVKALMKLNHSARLDYLRR 506
>ref|XP_006581623.1| PREDICTED: RNA polymerase sigma factor sigE,
chloroplastic/mitochondrial-like isoform X2 [Glycine max]
Length = 507
Score = 219 bits (557), Expect = 4e-54
Identities = 140/383 (36%), Positives = 216/383 (56%)
Frame = -2
Query: 1400 NGSRRQKRLSLDTRRALNLQKIENSKKGSKVQLGRKKRENNENAIDIDFWDKEIDKLIKE 1221
N +++ KRL+LD R +L +N+K G +V RKKR N N I+ +I++LI+E
Sbjct: 142 NKNKKPKRLNLDQRISL-----KNNKSGDEVIPTRKKR-NVGNKIE------KIEELIRE 189
Query: 1220 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1041
YS+ S+DW + VL SEH WL +LMQPMK + ++ L+ + REP D E+A
Sbjct: 190 YSVSTDFVSMDWKRMRIPPVLSSSEHAWLFKLMQPMKALLQVKEDLQQELTREPADGELA 249
Query: 1040 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEVYRQNFSNKKLGDVTLEFSDLCNAG 861
A + + VR+ ID GQAARNKLI+ NL+LVL+ V + F++ G F DLC AG
Sbjct: 250 DATNMSITQVRKAIDVGQAARNKLIKHNLRLVLF-VINKYFTDFASGP---RFQDLCQAG 305
Query: 860 LQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNIAXXXXXXXXXXXX 681
++GL+ A+DRF+P R+ R STY+ FWIRH + +++ + +P +
Sbjct: 306 VKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSNFTRVPFGLESVRAEIQKAKTE 365
Query: 680 XRSLYGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDNGSY 501
R PT+EE+ + + PE++ V K + +++ + + E D+G
Sbjct: 366 LTFELQRSPTEEEIIERVHISPERYHDVIKASKSILSLNSRHTTTQEEFINGIVDDDGVN 425
Query: 500 PIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISNEM 321
P RL +DD+L SL P+E +I++R+G +GK +++L E A L IS EM
Sbjct: 426 GDNRKQPALLRLA----LDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREM 481
Query: 320 VRKEENKAFSKLRDPSRIDFLKQ 252
VRK E KA KL+ +R+D+L++
Sbjct: 482 VRKHEVKALMKLKHSARLDYLRR 504
>ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,
chloroplastic/mitochondrial-like [Fragaria vesca subsp.
vesca]
Length = 520
Score = 218 bits (555), Expect = 6e-54
Identities = 137/385 (35%), Positives = 215/385 (55%), Gaps = 4/385 (1%)
Frame = -2
Query: 1394 SRRQKRLSLDTRRALNLQKIENSKKGSKVQLGRKKRENNENAIDIDFWDKEIDKLIKEYS 1215
+++ KRLSLD R AL K E S V+ + KR NE +++L++EYS
Sbjct: 156 TKKAKRLSLDKRVALKWNKDEKVA-ASVVRKRKDKRSENEM----------MEELVREYS 204
Query: 1214 MPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVAKA 1035
SLDW + VL SEH WL +LMQPMK E ++ L+ +GREPN E+A+A
Sbjct: 205 ASTDLVSLDWKKMRIPPVLSSSEHTWLFKLMQPMKGLLEVKEILQKDLGREPNKGELAEA 264
Query: 1034 LRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCNAG 861
+ + V+RH++ G+AARNKLI+ NL+LVL+ + Y Q+F+N +F DLC AG
Sbjct: 265 TNMTVVQVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQDFANGP------KFQDLCQAG 318
Query: 860 LQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNIAXXXXXXXXXXXX 681
++GL+ A+DRF+P R+ R STY FWIRH + +++ S + +
Sbjct: 319 VKGLITAIDRFEPQRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESVRAEIQKAKLE 378
Query: 680 XRSLYGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDNGSY 501
R PT++E+ + + PE++ +V + + +++ + + E NG
Sbjct: 379 MLVQLKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLNSRHSVTQEE------FINGIT 432
Query: 500 PIKENDPMDPRLE--VKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 327
+ D + R ++ +DD+L SL P+E +I++RYG +GK +++L E A L IS
Sbjct: 433 DVDGVDGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 492
Query: 326 EMVRKEENKAFSKLRDPSRIDFLKQ 252
EMVRK E KA KL+ P+R+D+L++
Sbjct: 493 EMVRKHEVKALMKLKHPARVDYLRR 517
>ref|NP_001276145.1| RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
[Glycine max] gi|382365034|dbj|BAM05478.1| sigma-like
factor 5B [Glycine max]
Length = 507
Score = 218 bits (554), Expect = 8e-54
Identities = 140/383 (36%), Positives = 215/383 (56%)
Frame = -2
Query: 1400 NGSRRQKRLSLDTRRALNLQKIENSKKGSKVQLGRKKRENNENAIDIDFWDKEIDKLIKE 1221
N +++ KRL+LD R +L +N+K G +V RKKR N N I+ +I++LI+E
Sbjct: 142 NKNKKPKRLNLDQRISL-----KNNKSGDEVIPTRKKR-NVGNKIE------KIEELIRE 189
Query: 1220 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1041
YS+ S+DW + VL SEH WL +LMQPMK + ++ L+ + REP D E+A
Sbjct: 190 YSVSTDFVSMDWKRMRIPPVLSSSEHAWLFKLMQPMKALLQVKEDLQQELTREPADGELA 249
Query: 1040 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEVYRQNFSNKKLGDVTLEFSDLCNAG 861
A + + VR+ ID GQAARNKLI+ NL+LVL+ V + F++ G F DLC AG
Sbjct: 250 DATNMSITQVRKAIDVGQAARNKLIKHNLRLVLF-VINKYFTDFASGP---RFQDLCQAG 305
Query: 860 LQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNIAXXXXXXXXXXXX 681
++GL+ A+DRF+P R+ R STY+ FWIRH + +++ + +P +
Sbjct: 306 VKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSNFTRVPFGLESVRAEIQKAKTE 365
Query: 680 XRSLYGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDNGSY 501
R PT+EE+ + + PE++ V K + +++ + + E D+G
Sbjct: 366 LTFELQRSPTEEEIIERVHISPERYHDVIKASKSILSLNSRHTTTQEEFINGIVDDDGVN 425
Query: 500 PIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISNEM 321
P RL +DD+L SL P+E +I+ R+G +GK +++L E A L IS EM
Sbjct: 426 GDNRKQPALLRLA----LDDVLDSLKPKESLVIRXRFGLDGKGDRTLGEIAGNLNISREM 481
Query: 320 VRKEENKAFSKLRDPSRIDFLKQ 252
VRK E KA KL+ +R+D+L++
Sbjct: 482 VRKHEVKALMKLKHSARLDYLRR 504
>gb|EPS69584.1| hypothetical protein M569_05182, partial [Genlisea aurea]
Length = 488
Score = 217 bits (553), Expect = 1e-53
Identities = 136/383 (35%), Positives = 218/383 (56%), Gaps = 2/383 (0%)
Frame = -2
Query: 1394 SRRQKRLSLDTRRALNLQKIENSKKGSKVQLGRKKRENNENAIDIDFWDKEIDKLIKEYS 1215
++ +KRL+L+ R +L + K+E+ S + RK +++ D++I +L++EYS
Sbjct: 123 NKTKKRLNLNERISLRM-KVESD---SSATIHRKNVPKSDD-------DQKISRLLREYS 171
Query: 1214 MPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVAKA 1035
SLDW + VL SEH WL +LMQPMK + ++ LK +GREP D E+A+A
Sbjct: 172 ASADLSSLDWKKMKIPPVLPSSEHTWLFKLMQPMKETNKVKETLKVALGREPTDYELAEA 231
Query: 1034 LRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCNAG 861
+ + +R+ I+ G+A+RNKLI+ NL+LVL+ + Y Q+FSN +F DLC AG
Sbjct: 232 MNMDPVPLRKRIEVGRASRNKLIRHNLRLVLFVMNKYFQDFSNGP------KFQDLCQAG 285
Query: 860 LQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNIAXXXXXXXXXXXX 681
++GL+ A+DRF+P RK R STY FWIRH V +++ S + +
Sbjct: 286 VKGLITAIDRFEPKRKSRLSTYGLFWIRHAVVRSMTLSSFTKVSFGLESIRAEIQKTKME 345
Query: 680 XRSLYGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDNGSY 501
R PT EE+ N + + E++++V + ++++ + NE ++ D
Sbjct: 346 LMVKLQRRPTDEEIMNRVGISEERYREVMRVTKPVSSLNARHEL-TNEEFIAGISDADDV 404
Query: 500 PIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISNEM 321
E D ++ +DD+L SL P+EG +I++RYG +GK +++L E A L IS EM
Sbjct: 405 ---EGDRRKELALLRLAIDDVLDSLKPKEGLVIRQRYGLDGKGDRTLGEVAGNLNISREM 461
Query: 320 VRKEENKAFSKLRDPSRIDFLKQ 252
VRK E KA KL+ P+R+D+L++
Sbjct: 462 VRKHEVKALMKLKHPARVDYLRR 484
>ref|XP_002333134.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 217 bits (553), Expect = 1e-53
Identities = 130/385 (33%), Positives = 212/385 (55%), Gaps = 2/385 (0%)
Frame = -2
Query: 1400 NGSRRQKRLSLDTRRALNLQKIENSKKGSKVQLGRKKRENNENAIDIDFWDKEIDKLIKE 1221
N +++ KRLSL+ R +L ++ E + G++K NEN ++ID L++E
Sbjct: 149 NRAKKAKRLSLEKRISLRIKNEEKLVSSA----GKRKDRKNEN--------EKIDDLVRE 196
Query: 1220 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1041
YS SLDW + VL SEH WL +LMQPMK + ++ L+ +G EP D+E+A
Sbjct: 197 YSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQVKEHLQENLGGEPTDVELA 256
Query: 1040 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 867
KA+ + + VR+ I G+AARNKLI+ NL+LVL+ + Y Q+F+N +F D C
Sbjct: 257 KAINMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQDFAN------GTKFQDFCQ 310
Query: 866 AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNIAXXXXXXXXXX 687
AG++GL+ A+DRF+P R+ R STY FWIRH + +++ S + +
Sbjct: 311 AGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESIRSEIQKAK 370
Query: 686 XXXRSLYGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDNG 507
R P ++E+ +++ PE++ +V + + ++ + + E G
Sbjct: 371 LELWFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTTQEE------FIGG 424
Query: 506 SYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 327
+ D ++ +DD+L SL P+E ++++RYG +GK +++L E A L IS
Sbjct: 425 IADVDGGDDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLGEIAGNLNISR 484
Query: 326 EMVRKEENKAFSKLRDPSRIDFLKQ 252
EMVRK E KA KL+ P+R+D+L++
Sbjct: 485 EMVRKHEVKALMKLKHPTRVDYLRR 509
>ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 514
Score = 216 bits (551), Expect = 2e-53
Identities = 139/388 (35%), Positives = 219/388 (56%), Gaps = 5/388 (1%)
Frame = -2
Query: 1400 NGSRRQKRLSLDTRRALNLQKIENSKKGSKVQLGRKKRENNENAIDIDFWDKEIDKLIKE 1221
N ++R KRL LD R AL +N K+G V L RK+++ A +ID D EID+L+++
Sbjct: 144 NQTKRIKRLDLDKRIAL-----KNKKEGKAVALLRKQKDTKNEADEID--DDEIDRLVRD 196
Query: 1220 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1041
YS SLDW + VL SEH L +L+QPMK E +++L+ +GREP + E+A
Sbjct: 197 YSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELA 256
Query: 1040 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 867
A + + VRR ++ G+AARNKLI+ NL+LVL+ + Y ++F++ +F DLC
Sbjct: 257 NATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGP------KFQDLCQ 310
Query: 866 AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNIAXXXXXXXXXX 687
AG++GL+ A+DRF+P RK R STYA FWIRH + +++ S + +
Sbjct: 311 AGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAK 370
Query: 686 XXXRSLYGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDNG 507
R PT+ E+ + + E++ +V + ++ + E + NG
Sbjct: 371 LELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLHSRHSTTSEE------LING 424
Query: 506 SYPIK---ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLG 336
++ ++ P L ++ +DD+L SL P+E +I++RYG +GK ++L E A L
Sbjct: 425 ITDVEGTGGDNRRQPAL-LRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLN 483
Query: 335 ISNEMVRKEENKAFSKLRDPSRIDFLKQ 252
IS EMVRK E KA KL+ P+R+D+L++
Sbjct: 484 ISREMVRKHEVKALMKLKHPARVDYLRR 511
>ref|XP_006376620.1| RNA polymerase sigma subunit SigE family protein [Populus
trichocarpa] gi|550326141|gb|ERP54417.1| RNA polymerase
sigma subunit SigE family protein [Populus trichocarpa]
Length = 512
Score = 216 bits (550), Expect = 2e-53
Identities = 130/385 (33%), Positives = 211/385 (54%), Gaps = 2/385 (0%)
Frame = -2
Query: 1400 NGSRRQKRLSLDTRRALNLQKIENSKKGSKVQLGRKKRENNENAIDIDFWDKEIDKLIKE 1221
N +++ KRLSL+ R +L ++ E + G++K NEN ++ID L++E
Sbjct: 149 NRAKKAKRLSLEKRISLRIKNEEKLVSSA----GKRKDRKNEN--------EKIDDLVRE 196
Query: 1220 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1041
YS SLDW + VL SEH WL +LMQPMK + ++ L+ +G EP D+E+A
Sbjct: 197 YSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQVKEHLQENLGGEPTDVELA 256
Query: 1040 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 867
KA + + VR+ I G+AARNKLI+ NL+LVL+ + Y Q+F+N +F D C
Sbjct: 257 KATNMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQDFAN------GTKFQDFCQ 310
Query: 866 AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNIAXXXXXXXXXX 687
AG++GL+ A+DRF+P R+ R STY FWIRH + +++ S + +
Sbjct: 311 AGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESIRSEIQKAK 370
Query: 686 XXXRSLYGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDNG 507
R P ++E+ +++ PE++ +V + + ++ + + E G
Sbjct: 371 LELWFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTTQEE------FIGG 424
Query: 506 SYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 327
+ D ++ +DD+L SL P+E ++++RYG +GK +++L E A L IS
Sbjct: 425 IADVDGGDDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLGEIAGNLNISR 484
Query: 326 EMVRKEENKAFSKLRDPSRIDFLKQ 252
EMVRK E KA KL+ P+R+D+L++
Sbjct: 485 EMVRKHEVKALMKLKHPTRVDYLRR 509
>ref|XP_006287402.1| hypothetical protein CARUB_v10000608mg, partial [Capsella rubella]
gi|482556108|gb|EOA20300.1| hypothetical protein
CARUB_v10000608mg, partial [Capsella rubella]
Length = 557
Score = 216 bits (550), Expect = 2e-53
Identities = 134/385 (34%), Positives = 211/385 (54%), Gaps = 2/385 (0%)
Frame = -2
Query: 1400 NGSRRQKRLSLDTRRALNLQKIENSKKGSKVQLGRKKRENNENAIDIDFWDKEIDKLIKE 1221
N ++ KRLSLD R AL E S + KK++ E +ID L+++
Sbjct: 190 NNVKKDKRLSLDKRIALKRNCQEKPFVASAEKKVTKKQQEEE----------KIDMLVRD 239
Query: 1220 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1041
YS+ SLDW + VL +EH WL +LMQPMK E + +L+ +GREP + E+A
Sbjct: 240 YSVSNDILSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLEVKDELQKSLGREPREAEIA 299
Query: 1040 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 867
+++ V++ I+ G+AARNKLI+ NL+LVL+ + Y Q F+N +F DLC
Sbjct: 300 GEIKMTTGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFQEFTNGP------KFQDLCQ 353
Query: 866 AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNIAXXXXXXXXXX 687
AG++GL+ A+DRF+P RK R STY FWIRH + +++ + +P +
Sbjct: 354 AGMKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVEIYKAK 413
Query: 686 XXXRSLYGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDNG 507
GR PT++E+ +++ PE++++V + +++ ++ + E +G
Sbjct: 414 MELLFELGRLPTEDEVIKRLKITPERYREVLRAAKPVFSLNSKHAVTQEEFINGITDVDG 473
Query: 506 SYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 327
P RL +DD+L SL P+E +I++RYG +GK +++L E A L IS
Sbjct: 474 VGADNRRQPALLRLA----LDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 529
Query: 326 EMVRKEENKAFSKLRDPSRIDFLKQ 252
EMVRK E KA KL+ +R+D+L+Q
Sbjct: 530 EMVRKHEVKALMKLKHQARVDYLRQ 554
>gb|EMJ20209.1| hypothetical protein PRUPE_ppa004259mg [Prunus persica]
Length = 519
Score = 216 bits (550), Expect = 2e-53
Identities = 135/387 (34%), Positives = 216/387 (55%), Gaps = 4/387 (1%)
Frame = -2
Query: 1400 NGSRRQKRLSLDTRRALNLQKIENSKKGSKVQLGRKKRENNENAIDIDFWDKEIDKLIKE 1221
N +++ KRLSL+ R AL K E K S + RK R+N +++I++L++E
Sbjct: 153 NRTKKAKRLSLNKRVALKWNKDE--KVISSIVRKRKSRKNE---------NEKIEELVRE 201
Query: 1220 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1041
YS SLDW + VL SEH WL +LMQPMK E ++ L+ +GREP + E+A
Sbjct: 202 YSTSTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGLLEVKENLQKDLGREPTNGELA 261
Query: 1040 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 867
+A + + V++H++ G+AAR+KLI+ NL+LVL+ + Y Q+F+N +F DLC
Sbjct: 262 EATNMSVVQVKKHLEVGRAARSKLIKHNLRLVLFVMNKYFQDFANGP------KFQDLCQ 315
Query: 866 AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNIAXXXXXXXXXX 687
AG++GL+ A+DRF+P R R STY FWIRH + +++ S + +
Sbjct: 316 AGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESVRAEIQKAK 375
Query: 686 XXXRSLYGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDNG 507
R PT++E+ + + PE++ +V + + ++ + + E NG
Sbjct: 376 LGMLFALKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLHSRHTTTQEE------FING 429
Query: 506 SYPIK--ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGI 333
+ E D ++ +DD+L SL P+E +I++RYG +GK +++L E A L I
Sbjct: 430 ITDVDGVEGDNRQKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNI 489
Query: 332 SNEMVRKEENKAFSKLRDPSRIDFLKQ 252
S EMVRK E KA KL+ P+R+D+L++
Sbjct: 490 SREMVRKHEVKALMKLKHPARVDYLRR 516
>dbj|BAJ34205.1| unnamed protein product [Thellungiella halophila]
Length = 511
Score = 215 bits (548), Expect = 4e-53
Identities = 133/385 (34%), Positives = 211/385 (54%), Gaps = 2/385 (0%)
Frame = -2
Query: 1400 NGSRRQKRLSLDTRRALNLQKIENSKKGSKVQLGRKKRENNENAIDIDFWDKEIDKLIKE 1221
N ++KRLSLD R AL E S + KK++ E +I++L+++
Sbjct: 144 NNGMKEKRLSLDKRIALKRNIQEKPLVPSAQKKVTKKQQEEE----------KIERLVRD 193
Query: 1220 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1041
YS SLDW + VL +EH WL +LMQPMK + + +L+ +GREP + E+A
Sbjct: 194 YSASHDIVSLDWKKMKIPPVLPSTEHAWLFKLMQPMKALLQVKDELQKSLGREPRETEIA 253
Query: 1040 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 867
+ + V+R I+ G+AARNKLI+ NL+LVL+ + Y Q+F+N +F DLC
Sbjct: 254 GEINMSAAEVKRKIEIGRAARNKLIKHNLRLVLFVMNKYFQDFTNGP------KFQDLCQ 307
Query: 866 AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNIAXXXXXXXXXX 687
AG++GL+ A+DRF+P RK R STY FWIRH + +++ + +P +
Sbjct: 308 AGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVEIYKTK 367
Query: 686 XXXRSLYGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDNG 507
GR PT++E+ +++ PE++++V + +++ ++ + E +G
Sbjct: 368 MELLFELGRLPTEDEVVERLKISPERYREVLRAAKPVFSLNSKHSVTQEEFINGITDVDG 427
Query: 506 SYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 327
P RL +DD+L SL P+E +I++RYG +GK +++L E A L IS
Sbjct: 428 VGADNRRQPAILRLA----LDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 483
Query: 326 EMVRKEENKAFSKLRDPSRIDFLKQ 252
EMVRK E KA KL+ +R+D+L+Q
Sbjct: 484 EMVRKHEVKALMKLKHQARVDYLRQ 508
>ref|NP_197800.1| RNA polymerase sigma factor 5 [Arabidopsis thaliana]
gi|75267675|sp|Q9ZNX9.1|SIGE_ARATH RecName: Full=RNA
polymerase sigma factor sigE,
chloroplastic/mitochondrial; Short=Sigma factor E;
Short=Sigma-E; AltName: Full=RNA polymerase sigma factor
sig5; Short=Atsig5; Short=Sigma factor 5; Flags:
Precursor gi|4033838|emb|CAA77213.1| sigma-like factor
[Arabidopsis thaliana] gi|4972299|dbj|BAA78109.1| RNA
polymerase sigma subunit SigE [Arabidopsis thaliana]
gi|10178160|dbj|BAB11572.1| sigma-like factor
[Arabidopsis thaliana] gi|222423237|dbj|BAH19595.1|
AT5G24120 [Arabidopsis thaliana]
gi|332005876|gb|AED93259.1| RNA polymerase sigma factor 5
[Arabidopsis thaliana]
Length = 517
Score = 213 bits (543), Expect = 2e-52
Identities = 131/388 (33%), Positives = 215/388 (55%), Gaps = 5/388 (1%)
Frame = -2
Query: 1400 NGSRRQKRLSLDTRRALNLQKIENSKKGSKVQLGRKKRENNENAIDIDFWDKEIDKLIKE 1221
N +++KR+SLD R AL + ++ + V KR+ E ++I++L+++
Sbjct: 150 NNVKKEKRMSLDKRIALK-RNVQEKPVVASVDKKVTKRQQEE---------EKIERLVRD 199
Query: 1220 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1041
YS SLDW + VL +EH WL +LMQPMK E + L+ +GREP + E+A
Sbjct: 200 YSASNDIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIA 259
Query: 1040 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 867
+ + V++ I+ G+AARNKLI+ NL+LVL+ + Y F+N +F DLC
Sbjct: 260 GEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFHEFTNGP------KFQDLCQ 313
Query: 866 AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNIAXXXXXXXXXX 687
AG++GL+ A+DRF+P RK R STY FWIRH + +++ + +P +
Sbjct: 314 AGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVEIYKAK 373
Query: 686 XXXRSLYGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDNG 507
GR PT++E+ +++ PE++++V + +++ ++ + E NG
Sbjct: 374 TELWFEMGRPPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVTQEE------FING 427
Query: 506 SYPIK---ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLG 336
+ N+ P L ++ +DD+L SL P+E +I++RYG +GK +++L E A L
Sbjct: 428 ITDVDGVGANNSRQPAL-LRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLN 486
Query: 335 ISNEMVRKEENKAFSKLRDPSRIDFLKQ 252
IS EMVRK E KA KL+ +R+D+L+Q
Sbjct: 487 ISREMVRKHEVKALMKLKHQARVDYLRQ 514
>ref|XP_002874170.1| hypothetical protein ARALYDRAFT_489269 [Arabidopsis lyrata subsp.
lyrata] gi|297320007|gb|EFH50429.1| hypothetical protein
ARALYDRAFT_489269 [Arabidopsis lyrata subsp. lyrata]
Length = 517
Score = 213 bits (542), Expect = 2e-52
Identities = 133/388 (34%), Positives = 214/388 (55%), Gaps = 5/388 (1%)
Frame = -2
Query: 1400 NGSRRQKRLSLDTRRALNLQKIENSKKGSKVQLGRKKRENNENAIDIDFWDKEIDKLIKE 1221
N ++KRLSLD R AL E S + KK++ E +I++L+++
Sbjct: 150 NNVMKEKRLSLDKRIALKRNVQEKPVVISAEKKVTKKQQEEE----------KIERLVRD 199
Query: 1220 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1041
YS SLDW + VL +EH WL +LMQPMK E + +L+ +GREP + E+A
Sbjct: 200 YSASNDIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLEVKDELQKSLGREPREAEIA 259
Query: 1040 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 867
+ + V++ I+ G+AARNKLI+ NL+LVL+ + Y +F+N +F DLC
Sbjct: 260 GEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFHDFTNGP------KFQDLCQ 313
Query: 866 AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNIAXXXXXXXXXX 687
AG++GL+ A+DRF+P RK R STY FWIRH + +++ + +P +
Sbjct: 314 AGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVEIFKTK 373
Query: 686 XXXRSLYGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDNG 507
GR PT++E+ +++ PE++++V + +++ ++ + E NG
Sbjct: 374 TELLFELGRLPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVTQEE------FING 427
Query: 506 SYPIK---ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLG 336
+ N+ P L ++ +DD+L SL P+E +I++RYG +GK +++L E A L
Sbjct: 428 ITDVDGVGANNSRQPAL-LRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLN 486
Query: 335 ISNEMVRKEENKAFSKLRDPSRIDFLKQ 252
IS EMVRK E KA KL+ +R+D+L+Q
Sbjct: 487 ISREMVRKHEVKALMKLKHQARVDYLRQ 514
>ref|XP_004502613.1| PREDICTED: RNA polymerase sigma factor sigE,
chloroplastic/mitochondrial-like [Cicer arietinum]
Length = 513
Score = 212 bits (540), Expect = 4e-52
Identities = 131/385 (34%), Positives = 217/385 (56%), Gaps = 2/385 (0%)
Frame = -2
Query: 1400 NGSRRQKRLSLDTRRALNLQKIENSKKGSKVQLGRKKRENNENAIDIDFWDKEIDKLIKE 1221
N + + KRL LD R AL K S+ + +K+ N + I+ +ID+L++E
Sbjct: 149 NQNVKAKRLDLDERIALK-------KNNSEDAIPTRKKRNVTSKIE------KIDELLRE 195
Query: 1220 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1041
YS+P SLDW + VL SEH +L +LMQPMK + ++ L+ + REP + ++A
Sbjct: 196 YSVPADFVSLDWKKMKIPPVLHSSEHAFLFKLMQPMKALHQVKEDLQKELAREPTEDDIA 255
Query: 1040 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 867
A + V++ I+ G+AARNKLI+ NL+LVL+ + Y +F+N F DLC
Sbjct: 256 DATHMRTAQVKKAIEVGRAARNKLIKHNLRLVLFVINKYFSDFANGS------RFQDLCQ 309
Query: 866 AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNIAXXXXXXXXXX 687
AG++GL+ A+DRF+P RK R STY+ FWIRH + +++ S +P +
Sbjct: 310 AGVKGLITAIDRFEPNRKFRLSTYSLFWIRHAIIRSMTLSSFSRVPFGLESVRAEIRRAK 369
Query: 686 XXXRSLYGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDNG 507
R PT+EE+ + + PE+++ V + + ++ ++ + E + +D+G
Sbjct: 370 LELTFELQRPPTEEEVIERVHISPERYRDVMRASKPLLSLHSRHLITQEEF-IDRVVDDG 428
Query: 506 SYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 327
+ ++ P L ++ +DD+L SL P+E +I++R+G +GK +++L E A L IS
Sbjct: 429 G--VDGDNRRQPAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISR 485
Query: 326 EMVRKEENKAFSKLRDPSRIDFLKQ 252
EMVRK E KA KL+ +R+D+L++
Sbjct: 486 EMVRKHEVKALMKLKHAARLDYLRR 510