BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00009454
         (2367 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [A...   584   e-164
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   537   e-150
ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group] g...   516   e-143
dbj|BAK04994.1| predicted protein [Hordeum vulgare subsp. vulgare]    508   e-141
ref|XP_004972829.1| PREDICTED: probable RNA polymerase II transc...   504   e-140
gb|EEC83408.1| hypothetical protein OsI_28861 [Oryza sativa Indi...   504   e-140
ref|XP_006474796.1| PREDICTED: probable RNA polymerase II transc...   499   e-138
ref|XP_006452717.1| hypothetical protein CICLE_v10007802mg [Citr...   498   e-138
dbj|BAK05807.1| predicted protein [Hordeum vulgare subsp. vulgare]    498   e-138
ref|XP_002443866.1| hypothetical protein SORBIDRAFT_07g003540 [S...   498   e-138
ref|XP_003573495.1| PREDICTED: probable RNA polymerase II transc...   496   e-137
ref|XP_006660062.1| PREDICTED: probable RNA polymerase II transc...   493   e-136
ref|XP_006352543.1| PREDICTED: probable RNA polymerase II transc...   493   e-136
ref|XP_004248296.1| PREDICTED: probable RNA polymerase II transc...   492   e-136
gb|ACG24327.1| BSD domain containing protein [Zea mays]               491   e-136
gb|AFW61224.1| BSD domain containing protein [Zea mays]               490   e-135
ref|XP_002530618.1| TFIIH basal transcription factor complex sub...   479   e-132
ref|XP_004496077.1| PREDICTED: probable RNA polymerase II transc...   478   e-132
ref|XP_003591640.1| General transcription factor IIH subunit [Me...   473   e-130
ref|XP_006452718.1| hypothetical protein CICLE_v10007802mg [Citr...   472   e-130

>ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [Amborella trichopoda]
            gi|548861733|gb|ERN19104.1| hypothetical protein
            AMTR_s00061p00135540 [Amborella trichopoda]
          Length = 626

 Score =  584 bits (1505), Expect = e-164
 Identities = 310/596 (52%), Positives = 404/596 (67%), Gaps = 14/596 (2%)
 Frame = +1

Query: 145  SMRATYKPT-VKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAA 321
            +MRA YK +  K PGV GVLT+ +  F F PNDP   S++KLDV+F+ IK HKFSKE + 
Sbjct: 7    TMRAKYKASGPKDPGVAGVLTMRDDSFIFRPNDPS--SSVKLDVSFRCIKGHKFSKEGSK 64

Query: 322  QALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQ---------QTTPQQAPP 474
            QALLNL QD   KGGG++FEF NF++R+VCRDLV ++L + Q         Q  P Q P 
Sbjct: 65   QALLNLTQD---KGGGYMFEFANFKDRDVCRDLVGRVLGRLQCLPPSDQSAQVVPAQ-PT 120

Query: 475  DNRDVLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKK 654
               D  L++ +ME RM +LR++S+LQKLH +LV+G VLTE EFWA R++L+++   K  K
Sbjct: 121  TQHDNQLSMAEMEQRMNLLREDSELQKLHRQLVIGGVLTETEFWATRKNLLDDAAHKASK 180

Query: 655  QMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDF 834
            Q  G KSAMLAD+      ++N V F LTPEII+QIFAEKPAV QA+LK VP KMS+ DF
Sbjct: 181  QRAGFKSAMLADVRPLTDGRTNKVTFSLTPEIIHQIFAEKPAVHQAFLKFVPSKMSERDF 240

Query: 835  WTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMASDL 1014
            WTKYCRAEY +R+K                   K D+ILA E RRKIR+VDPTVDMA+DL
Sbjct: 241  WTKYCRAEYLHRTKNSVAAAAEAAEDEELAVFLKHDDILASEARRKIRRVDPTVDMAADL 300

Query: 1015 ADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSV 1194
             DDY+HLPGHGILRD  +E +D ++  PKRT L+D+NRHAAVVLEG+TL + + GDTR+V
Sbjct: 301  GDDYSHLPGHGILRDGSKESVDSESELPKRTLLQDLNRHAAVVLEGRTL-DVELGDTRTV 359

Query: 1195 AQGLVRVNKGK--ANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDS 1368
            A+ L R  + +    T D+  +++R  RV +MT+IEDLQ P++L +A LCIKDPR+YFDS
Sbjct: 360  AEALARSKQAEVATETSDETENQKRLERVSQMTEIEDLQAPRSLPYAPLCIKDPREYFDS 419

Query: 1369 QQANGMYAQGEKRDFRTAE--HFNLDETYDSLANAVSRIGENGLKDPIMNPQLAVKVLDN 1542
            Q+AN   A G+       +  H +  + Y+SL   +  +   G KDPI+ P LA+KVL++
Sbjct: 420  QRANAFKATGDTGSGVNKDCCHLSTKQAYESLRAQILEVKSVGFKDPIVIPDLALKVLND 479

Query: 1543 LTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTVQELLRMFWACYPITSTFLSNK 1722
            +   +SST P  GKN +  VL  LP   +  L + W ++QELLR FW+ YP+T+TFL  K
Sbjct: 480  VNQQLSSTDPQLGKNPQATVLDMLPHRTKEELLQHWTSIQELLRHFWSSYPLTTTFLHAK 539

Query: 1723 VGKLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1890
            V ++KD MAQIY KL   K S + E RHQ+SLL+ PMLQ LD AF H +AE QKRS
Sbjct: 540  VNRVKDAMAQIYRKLPEVKESVQSEFRHQVSLLVKPMLQVLDEAFKHYDAEMQKRS 595


>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1 [Vitis vinifera] gi|296090002|emb|CBI39821.3| unnamed
            protein product [Vitis vinifera]
          Length = 602

 Score =  537 bits (1383), Expect = e-150
 Identities = 291/590 (49%), Positives = 386/590 (65%), Gaps = 10/590 (1%)
 Frame = +1

Query: 151  RATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAAQ-A 327
            RA YK +VK  GV GVL +TE KF F+PNDP   S+ + DV F+ IK HKFSK  + + A
Sbjct: 8    RARYKTSVKDSGVAGVLKMTEDKFVFMPNDPT--SSARFDVEFRFIKGHKFSKGGSNKPA 65

Query: 328  LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTP---QQAPPDNRDVLLN 498
            LLNL QD   KGGG+IFEF N+ +R VCR+ V + LAK+ + +    +Q+     D  L+
Sbjct: 66   LLNLTQDSE-KGGGYIFEFENYPDREVCREFVGRALAKFSEASKAGSEQSAVKLFDEQLS 124

Query: 499  VEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQMTGLKSA 678
              +ME R+++LR++S+LQKLH + V+  VLTEAEFWA R+ L++   S+  KQ  G KSA
Sbjct: 125  TIEMERRIKLLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDGNTSRTSKQRVGFKSA 184

Query: 679  MLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFWTKYCRAE 858
            M++D+      ++N V F+LTPEII+QIFAEKPAV QA+L  VP KM++ DFW KYCRAE
Sbjct: 185  MISDLKPLTDGRTNRVTFNLTPEIIHQIFAEKPAVHQAFLNFVPNKMTEKDFWNKYCRAE 244

Query: 859  YFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMASDLADDYTHLP 1038
            Y + ++                   K D+ILA+E RRKIR+VDPT+DM +D  DDY HLP
Sbjct: 245  YLHCTRNTVAAAAEAAEDEELAVFLKHDDILANEARRKIRRVDPTLDMEADQGDDYMHLP 304

Query: 1039 GHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVAQGLVRVN 1218
             HGI RD  +E ID    Q +RT  +D+NRHAAVVLEG+ + + +  DTR+VA+ L +  
Sbjct: 305  DHGIFRDGSKEIIDPQYEQYRRTLSQDLNRHAAVVLEGRPI-DVELEDTRTVAEALAKSK 363

Query: 1219 KGKA--NTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQANGMYA 1392
            + +A     D      R  R+  MT+IEDLQ P+ L FA+LCIKDPR YFDSQQAN +  
Sbjct: 364  RVEAANEKSDGSVTRERLERISRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANALKT 423

Query: 1393 QGE----KRDFRTAEHFNLDETYDSLANAVSRIGENGLKDPIMNPQLAVKVLDNLTHYIS 1560
             G+     +  + +   +  E Y SL   +S I   GL DPI+ P +A+KVL+ LT  IS
Sbjct: 424  LGDTLAGSKQIKCS--LSTQEAYGSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNIS 481

Query: 1561 STQPHKGKNAEKDVLSSLPIIEQNALKEQWKTVQELLRMFWACYPITSTFLSNKVGKLKD 1740
            ST+ H GKN ++ VL  LPII +  L   W ++QELLR FW+ YPIT+T+L  K  +LKD
Sbjct: 482  STKFHLGKNPQESVLDRLPIITKEELLHHWTSIQELLRHFWSSYPITTTYLYTKASRLKD 541

Query: 1741 TMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1890
             M+QIY KLQ  K S + + RHQ+SLL+ PMLQALDAAFAH +A+ QKRS
Sbjct: 542  AMSQIYPKLQEIKESVQSDFRHQVSLLVQPMLQALDAAFAHYDADQQKRS 591


>ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group]
            gi|38636938|dbj|BAD03200.1| unknown protein [Oryza sativa
            Japonica Group] gi|113623552|dbj|BAF23497.1| Os08g0338200
            [Oryza sativa Japonica Group]
            gi|215686948|dbj|BAG90767.1| unnamed protein product
            [Oryza sativa Japonica Group]
          Length = 604

 Score =  516 bits (1329), Expect = e-143
 Identities = 281/601 (46%), Positives = 395/601 (65%), Gaps = 13/601 (2%)
 Frame = +1

Query: 127  MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 306
            MG++  ++ A YK T+K PG  GVL + E KFTF P+DPR  S MKL+V+F++IK HKF+
Sbjct: 1    MGSM--TIGAKYKTTLKDPGTTGVLRMNEDKFTFTPHDPR--SAMKLNVDFRSIKGHKFN 56

Query: 307  K---ETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQ--AP 471
            K      A  LLNL +D + KGGG++FEF N   R++ RD VAK+L K Q T P +   P
Sbjct: 57   KVDGSKPAPPLLNLSKD-SDKGGGYMFEFDNVTNRDLSRDFVAKVLGKQQGTIPPKPNVP 115

Query: 472  PDNR-----DVLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEE 636
            P+N      +  L+  +M+ RM++L+++S+LQKLH + V+G +L E+EFWA R++L+E+E
Sbjct: 116  PENSVTSTGEEQLSAAEMQRRMKLLQEDSELQKLHMKFVLGNILQESEFWATRKNLLEDE 175

Query: 637  LSKNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQK 816
             +K  KQ  G KSAMLAD+  +   ++N V F LT EII+QIFAEKPAV +A+L  VP+K
Sbjct: 176  ANKGSKQRPGFKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAEKPAVHRAFLDFVPKK 235

Query: 817  MSDVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTV 996
            MS+ DFWTKY RAEY  R+K                   K+D+ILA E R KI++VDPT+
Sbjct: 236  MSEKDFWTKYFRAEYLLRTKNTVAATAEAAEDEELAIFLKNDDILAKEARLKIKRVDPTL 295

Query: 997  DMASDLADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDF 1176
            DM +D  DDY HLP HGI+RD  +E ID D    +RT  +D+NRHAAVVLEG++ S+ + 
Sbjct: 296  DMEADAGDDYIHLPDHGIIRDGSKETIDNDGELARRTLSQDLNRHAAVVLEGRS-SDVEL 354

Query: 1177 GDTRSVAQGLVRVNK-GKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPR 1353
             DT++VA+ + R  K   ++++   ++  R  +V  MT+IEDLQ P++L +A LCIKDPR
Sbjct: 355  TDTKTVAEAIARSKKEPPSSSISDDTNHERLVKVARMTEIEDLQAPRSLPYAPLCIKDPR 414

Query: 1354 QYFDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRIGENGLKDPIMNPQLAV 1527
            +YFDSQQAN + + G   D R A +  L  D+ +D L   +S I  NGL  P++   +A+
Sbjct: 415  EYFDSQQANALRSLGGNNDGRHARNCRLSTDDAFDHLLGQISSIKVNGLNYPVIQSDVAL 474

Query: 1528 KVLDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTVQELLRMFWACYPITST 1707
            KVL+ L   IS ++    KN +  +L  +P   ++ L + W  +QELL+ FW+ YPIT++
Sbjct: 475  KVLNELNEGISRSRRLNLKNPQDSLLGQIPRRTRDELMDHWAAIQELLQHFWSSYPITTS 534

Query: 1708 FLSNKVGKLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKR 1887
             L NKV ++KD M QIY+KLQ  K SA+P+ RH+IS L+ PM QALDAAF H+  + QK 
Sbjct: 535  VLYNKVQRIKDAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALDAAFNHDLEQQQKS 594

Query: 1888 S 1890
            S
Sbjct: 595  S 595


>dbj|BAK04994.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  508 bits (1308), Expect = e-141
 Identities = 284/591 (48%), Positives = 383/591 (64%), Gaps = 12/591 (2%)
 Frame = +1

Query: 154  ATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAAQ--- 324
            A YK T+K  G  GVL ++E KFTF PNDPR  S MKL V+F+ IK HKF+K   ++   
Sbjct: 4    AKYKATLKDRGTGGVLRMSEDKFTFTPNDPR--SLMKLSVDFQTIKGHKFNKVDGSKPTP 61

Query: 325  ALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQ--APPDNRDVLLN 498
            ALLNL +D + KGGG+IFEF N   R++CRD VA++L KYQ T P +   PP+   V   
Sbjct: 62   ALLNLSKD-SDKGGGYIFEFDNVGNRDLCRDFVARVLGKYQGTVPARPNVPPELSAVSTG 120

Query: 499  VE-----DMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQMT 663
             E     +ME RM++LR++S+LQKLH + V+G +L E+EFWA R++L+++E SK  KQ  
Sbjct: 121  PEQLSSAEMERRMKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDETSKGSKQKP 180

Query: 664  GLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFWTK 843
            G KSAMLAD+  +   Q+N V F LT EII+QIFAEKPAV +A+L  VP+K+S+ DFWTK
Sbjct: 181  GFKSAMLADVRPSADGQTNKVTFSLTTEIIHQIFAEKPAVHRAFLDYVPKKLSEKDFWTK 240

Query: 844  YCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMASDLADD 1023
            YCRAEY  R+K                   K+D+ILA E + KI++VDPT+DM +D  DD
Sbjct: 241  YCRAEYLLRTKNTLAAKAEAAEDEELAMFLKNDDILAKEAKLKIKRVDPTLDMEADAGDD 300

Query: 1024 YTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVAQG 1203
            Y HLP HGILRD  RE  D D+   +RT  +D+NRHAAVVLEG++ ++ +  DT++VA+ 
Sbjct: 301  YIHLPDHGILRDGSRETTDTDSELARRTLSQDLNRHAAVVLEGRS-ADIESTDTKTVAEA 359

Query: 1204 LVRVNK--GKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQA 1377
            L R  K    ++  D  S ER   +   MT+IEDLQ P++L +A LCIKDPR+YFDSQQA
Sbjct: 360  LARSKKEPPPSSVADDASHERLV-KAARMTEIEDLQAPRSLPYALLCIKDPREYFDSQQA 418

Query: 1378 NGMYAQGEKRDFRTAEHFNLDETYDSLANAVSRIGENGLKDPIMNPQLAVKVLDNLTHYI 1557
            N +   G   D R A   +L  T D+  + + +I    +  P++   +A+KVL+ L   I
Sbjct: 419  NALRPLG-SNDGRKARSCSL-STDDAFRHLMDQISSVKMNCPVVQSDVALKVLNELNEGI 476

Query: 1558 SSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTVQELLRMFWACYPITSTFLSNKVGKLK 1737
            S ++    KN +  +L  LP   ++ L + W  +QELLR FW+ YPIT+T L NKV +LK
Sbjct: 477  SRSRRLNLKNPQDSLLGRLPHRTRDELMDHWMAIQELLRHFWSSYPITTTVLCNKVQRLK 536

Query: 1738 DTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1890
            + M QIY+KLQ  K SA+P+ RH+IS L+ PM QALDAAF H   + QK S
Sbjct: 537  EAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALDAAFNHEHDQQQKSS 587


>ref|XP_004972829.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like isoform X1 [Setaria italica]
          Length = 600

 Score =  504 bits (1298), Expect = e-140
 Identities = 278/597 (46%), Positives = 392/597 (65%), Gaps = 11/597 (1%)
 Frame = +1

Query: 127  MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 306
            MG+L  ++ A YK T+K PG PG+L + + KFTF PNDPR  S MKL+V F++IK HKF+
Sbjct: 1    MGSL--TIGAKYKTTLKDPGTPGILRMNDDKFTFTPNDPR--SAMKLNVEFRSIKGHKFN 56

Query: 307  KETAAQ-ALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQAPPDNR 483
            K    + ALLNL +D + KGGG++FEF N   R++CRD VA++L K+Q   P+   P   
Sbjct: 57   KVDGNKPALLNLSKD-SDKGGGYMFEFDNVGNRDLCRDFVARVLGKHQGMPPRPTMPPEI 115

Query: 484  DV------LLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSK 645
             V       L+  ++E R+++LR++S+LQKLH + V+G +L E+EFWA R++L+++  +K
Sbjct: 116  SVPSAGMEQLSAAEVERRVKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDVANK 175

Query: 646  NKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSD 825
              KQ  G K+AM     S DG ++N V F+LTPE+I+QIFAEKPAVR+A+L  VP+KM+D
Sbjct: 176  ASKQKPGFKTAMSDVRPSADG-RTNKVTFNLTPEMIHQIFAEKPAVRRAFLDFVPKKMTD 234

Query: 826  VDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMA 1005
            ++FW KYCRAEY  R+K                   K+D+IL  E + KI++VDPT+DM 
Sbjct: 235  LEFWRKYCRAEYLLRTKNTAAAAAEAAEDEELAVFLKNDDILVKEAKLKIKQVDPTLDME 294

Query: 1006 SDLADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDT 1185
            +D  DDY HLP HGILRD  +E +D D+   +RT  +++NRHAAVVLEG   S+ +  D 
Sbjct: 295  ADAGDDYIHLPDHGILRDGSKETVDNDSEFARRTLSQELNRHAAVVLEG-IASDVELTDA 353

Query: 1186 RSVAQGLVRVNKGKANT--VDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQY 1359
            +SVA+ L R  K   +T  VD  S ER   +V  MT+IEDLQ P++L +A LCIKDPR+Y
Sbjct: 354  KSVAEALARSKKEPPSTSAVDDTSHERLL-KVARMTEIEDLQAPRSLPYAPLCIKDPREY 412

Query: 1360 FDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRIGENGLKDPIMNPQLAVKV 1533
            FDSQQAN + + G   D R + + +L  +E +  L + +S I  N     ++   +AVKV
Sbjct: 413  FDSQQANALRSLGASNDGRKSRNCSLSIEEAFHHLTDQISSIKVNKSNCTVIQSDMAVKV 472

Query: 1534 LDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTVQELLRMFWACYPITSTFL 1713
            L+ L   IS ++    KN ++ +L  +P   ++ L + W  +QELLR FW+ YPITST L
Sbjct: 473  LNELNEGISRSRRLNLKNPQEGLLGRVPQHTRDELMDHWTAIQELLRHFWSSYPITSTVL 532

Query: 1714 SNKVGKLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQK 1884
             NKV ++KD M QIY+KLQ+ K SA+P+ RH+IS L+ PM QALDAAF+H+  + QK
Sbjct: 533  YNKVQRVKDAMTQIYQKLQAIKESAQPDVRHEISRLVKPMTQALDAAFSHDLEQQQK 589


>gb|EEC83408.1| hypothetical protein OsI_28861 [Oryza sativa Indica Group]
            gi|222640385|gb|EEE68517.1| hypothetical protein
            OsJ_26954 [Oryza sativa Japonica Group]
          Length = 625

 Score =  504 bits (1297), Expect = e-140
 Identities = 281/622 (45%), Positives = 395/622 (63%), Gaps = 34/622 (5%)
 Frame = +1

Query: 127  MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 306
            MG++  ++ A YK T+K PG  GVL + E KFTF P+DPR  S MKL+V+F++IK HKF+
Sbjct: 1    MGSM--TIGAKYKTTLKDPGTTGVLRMNEDKFTFTPHDPR--SAMKLNVDFRSIKGHKFN 56

Query: 307  K---ETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQ--AP 471
            K      A  LLNL +D + KGGG++FEF N   R++ RD VAK+L K Q T P +   P
Sbjct: 57   KVDGSKPAPPLLNLSKD-SDKGGGYMFEFDNVTNRDLSRDFVAKVLGKQQGTIPPKPNVP 115

Query: 472  PDNR-----DVLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEE 636
            P+N      +  L+  +M+ RM++L+++S+LQKLH + V+G +L E+EFWA R++L+E+E
Sbjct: 116  PENSVTSTGEEQLSAAEMQRRMKLLQEDSELQKLHMKFVLGNILQESEFWATRKNLLEDE 175

Query: 637  LSKNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQK 816
             +K  KQ  G KSAMLAD+  +   ++N V F LT EII+QIFAEKPAV +A+L  VP+K
Sbjct: 176  ANKGSKQRPGFKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAEKPAVHRAFLDFVPKK 235

Query: 817  MSDVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTV 996
            MS+ DFWTKY RAEY  R+K                   K+D+ILA E R KI++VDPT+
Sbjct: 236  MSEKDFWTKYFRAEYLLRTKNTVAATAEAAEDEELAIFLKNDDILAKEARLKIKRVDPTL 295

Query: 997  DMASDLADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDF 1176
            DM +D  DDY HLP HGI+RD  +E ID D    +RT  +D+NRHAAVVLEG++ S+ + 
Sbjct: 296  DMEADAGDDYIHLPDHGIIRDGSKETIDNDGELARRTLSQDLNRHAAVVLEGRS-SDVEL 354

Query: 1177 GDTRSVAQGLVRVNK-GKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPR 1353
             DT++VA+ + R  K   ++++   ++  R  +V  MT+IEDLQ P++L +A LCIKDPR
Sbjct: 355  TDTKTVAEAIARSKKEPPSSSISDDTNHERLVKVARMTEIEDLQAPRSLPYAPLCIKDPR 414

Query: 1354 QYFDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRIGENGLKDPIMNPQLAV 1527
            +YFDSQQAN + + G   D R A +  L  D+ +D L   +S I  NGL  P++   +A+
Sbjct: 415  EYFDSQQANALRSLGGNNDGRHARNCRLSTDDAFDHLLGQISSIKVNGLNYPVIQSDVAL 474

Query: 1528 K---------------------VLDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKE 1644
            K                     VL+ L   IS ++    KN +  +L  +P   ++ L +
Sbjct: 475  KKLMMKAAFEDHVDIQITCDWRVLNELNEGISRSRRLNLKNPQDSLLGQIPRRTRDELMD 534

Query: 1645 QWKTVQELLRMFWACYPITSTFLSNKVGKLKDTMAQIYEKLQSTKASAKPESRHQISLLI 1824
             W  +QELL+ FW+ YPIT++ L NKV ++KD M QIY+KLQ  K SA+P+ RH+IS L+
Sbjct: 535  HWAAIQELLQHFWSSYPITTSVLYNKVQRIKDAMTQIYQKLQDIKESAQPDVRHEISQLV 594

Query: 1825 HPMLQALDAAFAHNEAESQKRS 1890
             PM QALDAAF H+  + QK S
Sbjct: 595  KPMTQALDAAFNHDLEQQQKSS 616


>ref|XP_006474796.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Citrus sinensis]
          Length = 597

 Score =  499 bits (1286), Expect = e-138
 Identities = 272/594 (45%), Positives = 381/594 (64%), Gaps = 7/594 (1%)
 Frame = +1

Query: 130  GTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSK 309
            G  Q + RA YK +VK PG PG L + +QK  F+P++    S  KL V FK+I+ HK++K
Sbjct: 3    GAAQVTKRAKYKISVKDPGTPGALRMNDQKLMFMPDNRN--SGAKLVVEFKSIQGHKYTK 60

Query: 310  ETAAQA-LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQAPPDNR- 483
            E + +  L+NL      +GG +IFEF ++ + +VCRD V+K+L K ++T P  A   +  
Sbjct: 61   EGSNKPPLINLAN---AQGGSYIFEFDSYADLHVCRDFVSKVLEKSKET-PNAALEKSAI 116

Query: 484  ---DVLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKK 654
               D  L+ E+M+ R+++L++NS+LQKLH + V G +LTEAEFWA R+ L++ + SK  K
Sbjct: 117  KLPDEQLSEEEMQLRIKLLQENSELQKLHRQFVGGNILTEAEFWAARKKLLDIDPSKKSK 176

Query: 655  QMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDF 834
            Q  G KSAM++D+      ++N V F LTPEII QIFAEKPAV +A+L  VP KM++++F
Sbjct: 177  QRVGFKSAMISDIRPATDGRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEMEF 236

Query: 835  WTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMASDL 1014
            WTKYCRAEY  R+K                   K+D+ILA+E R+KIR+VDPT+DM +D 
Sbjct: 237  WTKYCRAEYLSRTKNYHAVVAEAAEDEELAVFLKEDDILANEVRKKIRRVDPTLDMEADE 296

Query: 1015 ADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSV 1194
             DDYTHLP HGI RD  +E  +  +   +RT L+D+NRHAAVVLEG+T+       TR++
Sbjct: 297  GDDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQDLNRHAAVVLEGRTIDVEREDSTRAL 356

Query: 1195 AQGLVRVNKGKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQ 1374
            A+ L R  +G     D  ++E R +R   + +IEDLQ P  L  A L IKD R+YFDSQQ
Sbjct: 357  AEALARSKRGNEG-ADNNANEERLDRTPRVAEIEDLQAPHCLPLAPLSIKDAREYFDSQQ 415

Query: 1375 ANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRIGENGLKDPIMNPQLAVKVLDNLT 1548
            AN + A    RD + +   +L   E Y S+ +A+S I + GL DPI+NP++A+KV   LT
Sbjct: 416  ANTLKA---SRDAQASMKCSLSKQEAYRSVRDAISEIKDMGLSDPIVNPEVALKVYSGLT 472

Query: 1549 HYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTVQELLRMFWACYPITSTFLSNKVG 1728
            H ISS + H GKN  + VL  LP   +  L   W ++QELL+ FW+ YPIT+ +L +KV 
Sbjct: 473  HNISSIKYHLGKNPRETVLDRLPSATKEKLLYHWMSIQELLKHFWSSYPITTPYLYSKVN 532

Query: 1729 KLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1890
            +LKD ++ IY +L+  K S   + RHQ+SLL+ PM QALDAA  H +A+ QKRS
Sbjct: 533  RLKDALSNIYPQLEEMKESLPADLRHQVSLLVRPMQQALDAAIQHYDADLQKRS 586


>ref|XP_006452717.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
            gi|557555943|gb|ESR65957.1| hypothetical protein
            CICLE_v10007802mg [Citrus clementina]
          Length = 597

 Score =  498 bits (1283), Expect = e-138
 Identities = 269/593 (45%), Positives = 380/593 (64%), Gaps = 6/593 (1%)
 Frame = +1

Query: 130  GTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSK 309
            G  Q + RA YK +VK PG  G L + +QK  F+P++    S  KL V FK+I+ HK++K
Sbjct: 3    GAAQVTKRAKYKISVKDPGTTGALRMNDQKLMFMPDNRN--SGAKLVVEFKSIQGHKYTK 60

Query: 310  ETAAQA-LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTP---QQAPPD 477
            E + +  L+NL      +GG +IFEF ++ + +VCRD V+K+L K ++T     +++   
Sbjct: 61   EGSNKPPLINLAN---AQGGSYIFEFDSYSDLHVCRDFVSKVLEKSKETPNAALEKSAVK 117

Query: 478  NRDVLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQ 657
              D  L+ E+M+ R+++L++NS+LQKLH + V G +LTEAEFWA R+ L++ + SK  KQ
Sbjct: 118  LPDEQLSEEEMQLRIKLLQENSELQKLHRQFVGGNILTEAEFWAARKKLLDRDPSKKSKQ 177

Query: 658  MTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFW 837
              G KSAM++D+      ++N V F LTPEII QIFAEKPAV +A+L  VP KM++++FW
Sbjct: 178  RVGFKSAMISDIRPATDGRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEMEFW 237

Query: 838  TKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMASDLA 1017
            TKYCRAEY  R+K                   K+D+ILA+E R+KIR+VDPT+DM +D  
Sbjct: 238  TKYCRAEYLSRTKNYHAVVAEAAEDEELAVFLKEDDILANEVRKKIRRVDPTLDMEADEG 297

Query: 1018 DDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVA 1197
            DDYTHLP HGI RD  +E  +  +   +RT L+D+NRHAAVVLEG+T+       TR++A
Sbjct: 298  DDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQDLNRHAAVVLEGRTIDVEREDSTRALA 357

Query: 1198 QGLVRVNKGKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQA 1377
            + L R  +G     D  ++E R +R   + +IEDLQ P  L  A L IKD R+YFDSQQA
Sbjct: 358  EALARSKRGNEG-ADNNANEERLDRTPRVAEIEDLQAPHCLPLAPLSIKDAREYFDSQQA 416

Query: 1378 NGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRIGENGLKDPIMNPQLAVKVLDNLTH 1551
            N + A    RD + +   +L   E Y S+ +A+S I + GL DPI+NP++A+KV   LTH
Sbjct: 417  NTLKA---SRDSQASMKCSLSRQEAYGSVRDAISEIKDMGLSDPIVNPEVALKVYSGLTH 473

Query: 1552 YISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTVQELLRMFWACYPITSTFLSNKVGK 1731
             ISS + H GKN  + VL  LP   +  L   W ++QELL+ FW+ YPIT+ +L +KV +
Sbjct: 474  NISSIKYHLGKNPRETVLDRLPSATKEKLLYHWMSIQELLKHFWSSYPITTPYLYSKVNR 533

Query: 1732 LKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1890
            LKD ++ IY +L+  K S   + RHQ+SLL+ PM QALDAA  H +A+ QKRS
Sbjct: 534  LKDALSNIYPQLEEMKESLPADLRHQVSLLVRPMQQALDAAIQHYDADLQKRS 586


>dbj|BAK05807.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  498 bits (1283), Expect = e-138
 Identities = 278/600 (46%), Positives = 388/600 (64%), Gaps = 12/600 (2%)
 Frame = +1

Query: 127  MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 306
            MGT+  ++ A YK T+K PG  GVL ++E K  F PNDPR  S MKL V+F++IK HKF+
Sbjct: 1    MGTM--TIGAKYKTTLKDPGHGGVLRMSEDKLIFTPNDPR--SLMKLSVDFRSIKGHKFN 56

Query: 307  KETAAQA---LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQ--AP 471
            K   ++    LLNL +  + KGGG+IFEF N   R++CRD VA++L K+Q T P +   P
Sbjct: 57   KVDGSKPTPPLLNLSK-VSDKGGGYIFEFDNVGNRDLCRDFVARVLGKHQGTVPARPNVP 115

Query: 472  PDNRDVLLNVE-----DMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEE 636
            P+   V    E     +ME RM++LR++S+LQKLH + V+G +L E+EFWA R++L+++E
Sbjct: 116  PEKLAVSTGPEQLSSAEMERRMKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDE 175

Query: 637  LSKNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQK 816
             +K+ KQ  G KSAMLAD+  +   Q+N V F LT EII+QIFAEKPAV +A+L  VP+K
Sbjct: 176  TNKSSKQKPGFKSAMLADVRPSADGQTNKVTFSLTTEIIHQIFAEKPAVHRAFLDYVPKK 235

Query: 817  MSDVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTV 996
            +S+ DFWTKYCRAEY  R+K                   K+D+ILA E + KI++VDPT+
Sbjct: 236  LSEKDFWTKYCRAEYLLRTKNTLAAKAEAADDEELAMFLKNDDILAKEAKLKIKRVDPTL 295

Query: 997  DMASDLADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDF 1176
            DM +D  DDY HLP HGILRD  RE  D D+   +RT  +D+NRHAAVVLEG++ ++ + 
Sbjct: 296  DMEADAGDDYIHLPDHGILRDGSRETTDTDSELARRTLSQDLNRHAAVVLEGRS-TDIES 354

Query: 1177 GDTRSVAQGLVRVNK--GKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDP 1350
             DT++VA+ L R  K    ++  D  S ER   +   MT++EDLQ P++L +A LCIKDP
Sbjct: 355  TDTKTVAEALARSKKEPPPSSVADDASHERLV-KAARMTELEDLQAPRSLPYAPLCIKDP 413

Query: 1351 RQYFDSQQANGMYAQGEKRDFRTAEHFNLDETYDSLANAVSRIGENGLKDPIMNPQLAVK 1530
            R+YFDSQQAN +   G   D R A   +L    D+  + + +I    +  P++   +A+K
Sbjct: 414  REYFDSQQANALRPLG-NNDGRKARSCSLSAD-DAFRHLMDQISSVKMNCPVVQADVALK 471

Query: 1531 VLDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTVQELLRMFWACYPITSTF 1710
            VL+ L   IS ++    KN +  +L  LP   ++ L + W  +QELLR FW+ YPIT+  
Sbjct: 472  VLNELNEGISRSRRLNLKNPQDSLLGRLPHRTRDELMDHWTAIQELLRHFWSSYPITTAV 531

Query: 1711 LSNKVGKLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1890
            LSNKV +LK+ M QIY+KLQ  K SA+P+ RH+IS L+ PM QALDAAF H++ +   +S
Sbjct: 532  LSNKVQRLKEAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALDAAFYHDQQQKSSKS 591


>ref|XP_002443866.1| hypothetical protein SORBIDRAFT_07g003540 [Sorghum bicolor]
            gi|241940216|gb|EES13361.1| hypothetical protein
            SORBIDRAFT_07g003540 [Sorghum bicolor]
          Length = 600

 Score =  498 bits (1283), Expect = e-138
 Identities = 274/599 (45%), Positives = 392/599 (65%), Gaps = 11/599 (1%)
 Frame = +1

Query: 127  MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 306
            MG++  ++ A YK T+K PG PG+L + + +FTF PNDPR  S MK +V+F+ IK HKF+
Sbjct: 1    MGSM--TIGAKYKTTIKDPGTPGILRMNDDRFTFTPNDPR--SAMKFNVDFRTIKGHKFN 56

Query: 307  K-ETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQ--APPD 477
            K E    ALLNL ++   K GG+IFEF N   R++CRD VA++L K+Q T P +    P+
Sbjct: 57   KVEGNKAALLNLSKED--KAGGYIFEFDNVGNRDLCRDFVARVLGKHQGTVPPRPTVAPE 114

Query: 478  NRDVL-----LNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELS 642
            N         L+V ++E R+++LR++S+LQKLH + V+G +L E+EFWA R++L+++E +
Sbjct: 115  NSVASAALEQLSVAEVERRVKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDEAN 174

Query: 643  KNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMS 822
            K  KQ  G K++++    +TDG ++N V F +TPE+I+QIFAEKPAVR+AYL  VP+KM 
Sbjct: 175  KRSKQRAGFKNSLVDIKPTTDG-RTNKVTFQITPEMIHQIFAEKPAVRRAYLDYVPKKMV 233

Query: 823  DVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDM 1002
            +  FW KYCRAEY +R+K                   K+D+ILA E   +I++VDPT+DM
Sbjct: 234  ETRFWEKYCRAEYLFRTKNTAAATAEAAGDEELAIFLKNDDILAKEFWLQIKRVDPTLDM 293

Query: 1003 ASDLADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGD 1182
             +D  DDY HLP HGI RD  +E ID D+   +RT  +D+NRHAAVVLEG++L + +  D
Sbjct: 294  EADTGDDYIHLPDHGIHRDGNKETIDADSELARRTLSQDLNRHAAVVLEGRSL-DVESTD 352

Query: 1183 TRSVAQGLVRVNKGKANT-VDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQY 1359
             +++A+ L R  K   +T +D  ++  R  +V  MT+IEDLQ P++L +A LCIKDPR+Y
Sbjct: 353  PKTLAEALARSKKEPPSTSIDDDANHERLVKVARMTEIEDLQAPRSLPYAPLCIKDPREY 412

Query: 1360 FDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRIGENGLKDPIMNPQLAVKV 1533
            FDSQQAN + + G   D R A   +L  +E +  L + +S I  N L  PI+   +A+KV
Sbjct: 413  FDSQQANALRSLGGSNDGRKARTCSLSTEEAFHHLMDQMSSIKVNKLNCPIIQSDMALKV 472

Query: 1534 LDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTVQELLRMFWACYPITSTFL 1713
            L+ L   IS ++    KN ++ +L  LP   ++ L + W  +QELLR FW+ YPITS  L
Sbjct: 473  LNELNEGISRSRRLNLKNPQEGLLGQLPQHTRDELMDHWTAIQELLRHFWSSYPITSAVL 532

Query: 1714 SNKVGKLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1890
             NKV ++K+ M QIY+KLQ  K SA+P+ RH+IS L+ PM QALDAAF H+  + QK S
Sbjct: 533  YNKVQRVKEAMTQIYQKLQLIKESAQPDVRHEISRLVKPMTQALDAAFNHDLEQQQKSS 591


>ref|XP_003573495.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Brachypodium distachyon]
          Length = 602

 Score =  496 bits (1277), Expect = e-137
 Identities = 274/601 (45%), Positives = 386/601 (64%), Gaps = 13/601 (2%)
 Frame = +1

Query: 127  MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 306
            MGT+  ++ A YK T+K PG  GVL + E K  FIPNDPR  S MKL+V+F+ IK HKF+
Sbjct: 1    MGTM--TIGAKYKTTLKDPGTTGVLRMNEDKLAFIPNDPR--SLMKLNVDFRTIKGHKFN 56

Query: 307  KETAAQA---LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQ--AP 471
            K   ++    LLNL +D + KGGG++FEF N   R++CRD VA++L K+Q   P +  AP
Sbjct: 57   KVDGSKPTPPLLNLSKD-SDKGGGYMFEFDNVGNRDLCRDFVARVLGKHQGIVPPRPNAP 115

Query: 472  PDNRDVLLNVE-----DMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEE 636
            P+        E     +ME RM++LR++S+LQKLH + V+G +L E+EFWA R++L+++E
Sbjct: 116  PEKSVAAAGPEQLSSAEMERRMKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDE 175

Query: 637  LSKNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQK 816
             +   KQ  G +S MLAD+  +   Q+N V F LT EII+QIFAEKPAV +A+L  VP+K
Sbjct: 176  ANTASKQKPGFRSVMLADVRPSADGQTNKVTFSLTNEIIHQIFAEKPAVHRAFLDYVPKK 235

Query: 817  MSDVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTV 996
            +S+ DFWTKYCRAEY  R+K                   ++D+I+A E + KI++VDPT+
Sbjct: 236  LSEKDFWTKYCRAEYLLRTKNTLAAKAEAADDEELAIFLRNDDIVAKEAKLKIKRVDPTL 295

Query: 997  DMASDLADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDF 1176
            DM +D  DDY HLP HGILRD  RE  D D+   +RT  +D+NRHAAVVLEG+  ++ + 
Sbjct: 296  DMEADAGDDYIHLPDHGILRDGSRETTDTDSELARRTLSQDLNRHAAVVLEGRK-TDVEI 354

Query: 1177 GDTRSVAQGLVR-VNKGKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPR 1353
             D ++VA+ L R   +   +++   +   R  +V  MT+IEDLQ P++L +A LCIKDPR
Sbjct: 355  ADAKTVAEALARSKTETPCSSIADDASHERLLKVARMTEIEDLQAPRSLPYAPLCIKDPR 414

Query: 1354 QYFDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRIGENGLKDPIMNPQLAV 1527
            +YFDSQQAN +   G   D R A   +L  D+ +  L + +S +  N L  P++   +A+
Sbjct: 415  EYFDSQQANPLRPLG--GDGRKARSCSLSTDDAFRHLMDQISSVKVNKLSCPVVQSNVAL 472

Query: 1528 KVLDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTVQELLRMFWACYPITST 1707
            KVL+ L   IS ++    KN +  +L  LP   ++ L + W  +QELLR FW+ YPIT+T
Sbjct: 473  KVLNELNEGISRSRRLNLKNPQDSLLGRLPHRTRDELMDHWTAIQELLRHFWSSYPITTT 532

Query: 1708 FLSNKVGKLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKR 1887
             L NK+ ++KD M QIY+KLQ  K SA+P+ RH+IS L+ PM QALDAAF H+  + QK 
Sbjct: 533  VLYNKIQRVKDAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALDAAFNHDLEQQQKS 592

Query: 1888 S 1890
            S
Sbjct: 593  S 593


>ref|XP_006660062.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Oryza brachyantha]
          Length = 621

 Score =  493 bits (1270), Expect = e-136
 Identities = 272/601 (45%), Positives = 383/601 (63%), Gaps = 11/601 (1%)
 Frame = +1

Query: 121  EKMGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHK 300
            E++   +++   + + T K   +     + E KFTF PNDPR  S MKL+V+F++IK HK
Sbjct: 19   EELNNFKRNEVWSLEKTPKQNVIGTKCRMNEDKFTFTPNDPR--SAMKLNVDFRSIKGHK 76

Query: 301  FSK---ETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQAP 471
            F+K      A  LLNL +D + KGGG+IFEF N   R++ RD VA++L K Q T P   P
Sbjct: 77   FNKVDGNKPAPPLLNLSKD-SDKGGGYIFEFENVTSRDLSRDFVARVLGKQQGTIP---P 132

Query: 472  PDNRDVL-----LNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEE 636
            P+N         L+  +M+ RM++L ++S+LQKLH +LV+G +L E+EFWA R++L+++E
Sbjct: 133  PENSVTSTDPEQLSAAEMQRRMKLLHEDSELQKLHRKLVIGNILQESEFWATRKNLLDDE 192

Query: 637  LSKNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQK 816
             +K  KQ  G KSAMLAD+  +   ++N V F LT EII+QIFAEKPAV +A+L  VP+K
Sbjct: 193  ANKGSKQRPGFKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAEKPAVHRAFLNFVPKK 252

Query: 817  MSDVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTV 996
            MS+ DFWTKY RAEY  R+K                   K+D+ILA E R KI++VDPT+
Sbjct: 253  MSEKDFWTKYFRAEYLLRTKNTVAAAAEAAEDEELAVFLKNDDILAKEARLKIKRVDPTL 312

Query: 997  DMASDLADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDF 1176
            DM +D  DDY HLP HGI+RD  +E I+ D    +RT  +D+NRHAAVVLEG++ S+ + 
Sbjct: 313  DMEADAGDDYIHLPDHGIIRDGSKETIENDGELARRTLSQDLNRHAAVVLEGRS-SDVEL 371

Query: 1177 GDTRSVAQGLVRVNK-GKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPR 1353
             DT++VA+ L R  +    +++   +   R  +V  MT+IEDLQ P+++ +A LCIKDPR
Sbjct: 372  TDTKTVAEALARSKREPPPSSISDDTSHERLVKVARMTEIEDLQAPRSVPYAPLCIKDPR 431

Query: 1354 QYFDSQQANGMYAQGEKRDFRTAEHFNLD--ETYDSLANAVSRIGENGLKDPIMNPQLAV 1527
            +YFDSQQAN + + G   D R A +  L   + +D L   +S I  NGL  P++   +A 
Sbjct: 432  EYFDSQQANALRSLGGNNDGRHARNCRLSAHDAFDHLLGQISSIKVNGLNYPVVQSDVAF 491

Query: 1528 KVLDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTVQELLRMFWACYPITST 1707
            KVL+ L   IS T+    KN +  +L  +P   ++ L + W  +QELLR FW+ YPIT++
Sbjct: 492  KVLNELNDGISRTRRLNLKNPQDSLLGQIPRHTRDELMDHWTAIQELLRHFWSSYPITTS 551

Query: 1708 FLSNKVGKLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKR 1887
             L NKV ++KD M QIY+KLQ+ K SA+P+ RH+IS L+ PM QALDAAF H   + QK 
Sbjct: 552  VLYNKVQRIKDAMTQIYQKLQNIKESAQPDVRHEISQLVKPMTQALDAAFNHELEQQQKS 611

Query: 1888 S 1890
            S
Sbjct: 612  S 612


>ref|XP_006352543.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Solanum tuberosum]
          Length = 599

 Score =  493 bits (1270), Expect = e-136
 Identities = 277/589 (47%), Positives = 383/589 (65%), Gaps = 9/589 (1%)
 Frame = +1

Query: 151  RATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAA-QA 327
            RA YK +VK PGVPGVL LT+++F F+PNDP   +  KL+V FK IK HK SKE ++ QA
Sbjct: 9    RAKYKTSVKVPGVPGVLKLTKERFYFMPNDPTLTT--KLNVEFKLIKGHKSSKECSSKQA 66

Query: 328  LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQT--TPQQAPPDNRDVLLNV 501
            LLNL Q    +GG ++FEF +F +R+ CRD VA  +A   +      + P    D  L+ 
Sbjct: 67   LLNLTQ---AQGGNYLFEFDSFPDRDQCRDFVASAIAACGEIGKATSEKPAVPHDEQLSA 123

Query: 502  EDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQMTGLKSAM 681
             +M  R+++L++NS+LQKLH +LV+G +L+EAEFWA R+ L+E+  +K  KQ   LK+ M
Sbjct: 124  TEMGRRIKLLQENSELQKLHRQLVIGGILSEAEFWAARKKLLEQSENKKPKQRVALKNDM 183

Query: 682  LADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFWTKYCRAEY 861
             +    +DG Q+N V F+LTPE+I+QIFAEKPAVRQAYLK VP KMS+ +FWTKY RAEY
Sbjct: 184  WSVKPLSDG-QTNRVTFNLTPEVIHQIFAEKPAVRQAYLKFVPGKMSEKEFWTKYSRAEY 242

Query: 862  FYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMASDLADDYTHLPG 1041
             + +K                   K D++L  E RRKIR+VDPT+DM +D  DDY HLP 
Sbjct: 243  LHSTKNIVAAAAEAAEDEELAVFLKQDDMLVSEARRKIRRVDPTLDMEADEGDDYMHLPD 302

Query: 1042 HGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVAQGLVRVNK 1221
            HG+ +   +E ++      KR+F + +N+HAAVVL G+ + + + GDTRSVA+   R  +
Sbjct: 303  HGLPQGETKEILEPQYEPFKRSFSQYLNQHAAVVLRGRVI-DVELGDTRSVAEAFTRTYQ 361

Query: 1222 GKANTVDKLSDER----RKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQANGMY 1389
             +  T  ++SDE     R  +V  + +IEDLQGPQ    A L IKDPR YFDSQQAN + 
Sbjct: 362  AEQAT--EVSDENAYRERVKKVSRVAEIEDLQGPQDPPVALLSIKDPRDYFDSQQANAIK 419

Query: 1390 AQGEKRDFRTAEHFNL--DETYDSLANAVSRIGENGLKDPIMNPQLAVKVLDNLTHYISS 1563
            A G+         F++  +E + SL +++S I   GL +PI++P++A+KV + L+  ISS
Sbjct: 420  ALGDAETGIRQLKFSVSKEEAFCSLKDSISEINSQGLIEPIISPEVALKVFNGLSQNISS 479

Query: 1564 TQPHKGKNAEKDVLSSLPIIEQNALKEQWKTVQELLRMFWACYPITSTFLSNKVGKLKDT 1743
            T+ + GKN  + VL  LP   +N L   W ++QELL+ FW+ YPIT+ +   KV +LKD 
Sbjct: 480  TKYYLGKNPHESVLDQLPSATKNELLLHWTSIQELLKHFWSSYPITTKYFYAKVTRLKDA 539

Query: 1744 MAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1890
            M+QIY KLQ  K S + + RHQ+SLL+ PMLQALDAAFAH +A+ QKRS
Sbjct: 540  MSQIYPKLQEIKESVQSDVRHQVSLLVQPMLQALDAAFAHYDADIQKRS 588


>ref|XP_004248296.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Solanum lycopersicum]
          Length = 599

 Score =  492 bits (1266), Expect = e-136
 Identities = 276/589 (46%), Positives = 381/589 (64%), Gaps = 9/589 (1%)
 Frame = +1

Query: 151  RATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAA-QA 327
            RA YK +VK PGVPGVL LT+++F F+PNDP   +  KL+V FK IK HK SKE ++ QA
Sbjct: 9    RAKYKTSVKVPGVPGVLKLTKERFYFMPNDPTLTT--KLNVEFKLIKGHKSSKECSSKQA 66

Query: 328  LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQT--TPQQAPPDNRDVLLNV 501
            LLNL Q    +GG ++FEF +F +R+ CRD VA  +A   +      + P    D  L+ 
Sbjct: 67   LLNLTQ---AQGGNYLFEFDSFPDRDQCRDFVASAIAACGEIGKATSEKPAVPHDEQLSA 123

Query: 502  EDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQMTGLKSAM 681
             +M  R+++L++NS+LQ LH ELV+  +L+E EFWA R+ L+E+  +K  KQ   LK+ M
Sbjct: 124  TEMGRRIKLLQENSELQNLHRELVIAGILSETEFWAARKKLLEQSENKKPKQRVALKNDM 183

Query: 682  LADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFWTKYCRAEY 861
             +    +DG Q+N V F+LTPE+I+QIFAEKPAVRQAYLK VP KMS+ +FWTKY RAEY
Sbjct: 184  WSVKPLSDG-QTNRVTFNLTPEVIHQIFAEKPAVRQAYLKFVPGKMSEKEFWTKYSRAEY 242

Query: 862  FYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMASDLADDYTHLPG 1041
             + +K                   K D++L  E RRKIR+VDPT+DM +D  DDY HLP 
Sbjct: 243  LHSTKNIVAAAAEAAEDEELAVFLKQDDMLVSEARRKIRRVDPTLDMEADEGDDYMHLPD 302

Query: 1042 HGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVAQGLVRVNK 1221
            HG+ +   +E ++      KR+F + +N+HAAVVL+G+ + + + GDTRSVA+   R N+
Sbjct: 303  HGLPQGETKEILEPQYEPFKRSFSQYLNQHAAVVLQGRVI-DVELGDTRSVAEAFTRTNQ 361

Query: 1222 GKANTVDKLSDER----RKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQANGMY 1389
             +  T  ++SDE     R  +V  + +IEDLQGP+    A L IKDPR YFDSQQAN + 
Sbjct: 362  AEQAT--EVSDENAYRERVKKVSRVAEIEDLQGPRDPPVALLSIKDPRDYFDSQQANAIK 419

Query: 1390 AQGEKRDFRTAEHFNL--DETYDSLANAVSRIGENGLKDPIMNPQLAVKVLDNLTHYISS 1563
            A G+         F +  +E + SL +++S I   GL +PI++P++A+KV + L+  ISS
Sbjct: 420  ALGDAETGIRQLKFRVSKEEAFCSLKDSISEINSQGLIEPIISPEVALKVFNLLSQNISS 479

Query: 1564 TQPHKGKNAEKDVLSSLPIIEQNALKEQWKTVQELLRMFWACYPITSTFLSNKVGKLKDT 1743
            T+ H GKN  + VL  LP   +N L   W ++QELL+ FW+ YPIT+ +   KV +LKD 
Sbjct: 480  TKYHLGKNPHESVLDQLPSATKNELLLHWTSIQELLKHFWSSYPITTKYFYAKVTRLKDA 539

Query: 1744 MAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1890
            M+QIY KLQ  K S + + RHQ+SLL+ PMLQALDAAFAH +A+ QKRS
Sbjct: 540  MSQIYPKLQEIKESVQSDVRHQVSLLVQPMLQALDAAFAHYDADLQKRS 588


>gb|ACG24327.1| BSD domain containing protein [Zea mays]
          Length = 600

 Score =  491 bits (1264), Expect = e-136
 Identities = 272/599 (45%), Positives = 385/599 (64%), Gaps = 11/599 (1%)
 Frame = +1

Query: 127  MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 306
            MG++  ++ A YK T+K PG PG+L +   +FTF PNDPR  S MK +V+F+ IK HKF+
Sbjct: 1    MGSM--TIGAKYKTTIKDPGTPGILRMNGDRFTFTPNDPR--SAMKFNVDFRTIKGHKFN 56

Query: 307  K-ETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQ--APPD 477
            K E    ALLNL ++   K GG+IFEF N   R+ CRD VA++L K+Q   P +    P+
Sbjct: 57   KVEGNKAALLNLSKED--KAGGYIFEFDNVGNRDQCRDFVARVLGKHQGIVPPRPTVAPE 114

Query: 478  NRDVL-----LNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELS 642
            N         L+  ++E R+++LR++S+LQKLH + V+G +L E+EFWA R++L+++E +
Sbjct: 115  NSVASAALEQLSAAEVERRVKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDEAN 174

Query: 643  KNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMS 822
            K  KQ  G KSA++    +TDG ++N V F +TPE+I+QIFAEKPAVR+AYL  VP+KMS
Sbjct: 175  KRSKQKPGFKSALVDIRPTTDG-RTNKVTFQITPEMIHQIFAEKPAVRRAYLDFVPKKMS 233

Query: 823  DVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDM 1002
            +  FW KYCRAEY  R+K                   K+D+ILA E + KI++VDPT+DM
Sbjct: 234  ETRFWEKYCRAEYLVRTKNTAAATAEAAGNEELAIFLKNDDILAKEAKLKIKRVDPTLDM 293

Query: 1003 ASDLADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGD 1182
             +D  DDY HLP HGI RD  +E +D D+   +RT  +D+NRHAAVVLEG++L + +  D
Sbjct: 294  EADTGDDYIHLPDHGIHRDGSKETVDADSELARRTLSQDLNRHAAVVLEGRSL-DVESSD 352

Query: 1183 TRSVAQGLVRVNKGKANTVDKLSDER-RKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQY 1359
             +++A+ L R  K   +T +   D   R  +V  MT+IEDLQ P++L +A LCIKDPR+Y
Sbjct: 353  PKTLAEALARSKKEPPSTSNVDDDNHERLMKVARMTEIEDLQAPRSLLYAPLCIKDPREY 412

Query: 1360 FDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRIGENGLKDPIMNPQLAVKV 1533
            FDSQQAN + + G     R A   +L  +E +  L + +S +  N L  PI+   +A+KV
Sbjct: 413  FDSQQANALRSLGGSNGGRKAHSCSLSTEEVFHHLMDQMSSVKVNRLNCPIVQSDMALKV 472

Query: 1534 LDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTVQELLRMFWACYPITSTFL 1713
            L+ L   IS ++    KN ++ +L  LP   ++ L + W  +QELLR FW+ YPITS  L
Sbjct: 473  LNELNEGISRSRRLNLKNPQEGLLGQLPQHTRDELMDHWTAIQELLRHFWSSYPITSAVL 532

Query: 1714 SNKVGKLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1890
             NKV ++K+ M QIY+KLQ  K  A+P+ RH+IS L+ PM QALDAAF H+  + QK S
Sbjct: 533  YNKVQRVKEAMTQIYQKLQLIKELAQPDVRHEISRLVKPMTQALDAAFNHDLEQQQKSS 591


>gb|AFW61224.1| BSD domain containing protein [Zea mays]
          Length = 600

 Score =  490 bits (1262), Expect = e-135
 Identities = 272/599 (45%), Positives = 385/599 (64%), Gaps = 11/599 (1%)
 Frame = +1

Query: 127  MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 306
            MG++  ++ A YK T+K PG PG+L +   +FTF PNDPR  S MK +V+F+ IK HKF+
Sbjct: 1    MGSM--TIGAKYKTTIKDPGTPGILRMNGDRFTFTPNDPR--SAMKFNVDFRTIKGHKFN 56

Query: 307  K-ETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQ--APPD 477
            K E    ALLNL ++   K GG+IFEF N   R+ CRD VA++L K+Q   P +    P+
Sbjct: 57   KVEGNKAALLNLSKED--KAGGYIFEFDNVGNRDQCRDFVARVLGKHQGIVPPRPTVAPE 114

Query: 478  NRDVL-----LNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELS 642
            N         L+  ++E R+++LR++S+LQKLH + V+G +L E+EFWA R++L+++E +
Sbjct: 115  NSVASAALEQLSAAEVERRVKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDEAN 174

Query: 643  KNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMS 822
            K  KQ  G KSA++    +TDG ++N V F +TPE+I+QIFAEKPAVR+AYL  VP+KMS
Sbjct: 175  KRSKQKPGFKSALVDIRPTTDG-RTNKVTFQITPEMIHQIFAEKPAVRRAYLDFVPKKMS 233

Query: 823  DVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDM 1002
            +  FW KYCRAEY  R+K                   K+D+ILA E + KI++VDPT+DM
Sbjct: 234  ETRFWEKYCRAEYLVRTKNTAAATAEAAGDEELAIFLKNDDILAKEAKLKIKRVDPTLDM 293

Query: 1003 ASDLADDYTHLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGD 1182
             +D  DDY HLP HGI RD  +E +D D+   +RT  +D+NRHAAVVLEG++L + +  D
Sbjct: 294  EADTGDDYIHLPDHGIHRDGSKETVDADSELARRTLSQDLNRHAAVVLEGRSL-DVESTD 352

Query: 1183 TRSVAQGLVRVNKGKANTVDKLSDER-RKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQY 1359
             +++A+ L R  K   +T +   D   R  +V  MT+IEDLQ P++L +A LCIKDPR+Y
Sbjct: 353  PKTLAEALARSKKEPPSTSNVDDDNHERLMKVARMTEIEDLQAPRSLLYAPLCIKDPREY 412

Query: 1360 FDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRIGENGLKDPIMNPQLAVKV 1533
            FDSQQAN + + G     R A   +L  +E +  L + +S +  N L  PI+   +A+KV
Sbjct: 413  FDSQQANALRSLGGSNGGRKAHSCSLSTEEVFHHLMDQMSSVKVNRLNCPIVQSDMALKV 472

Query: 1534 LDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTVQELLRMFWACYPITSTFL 1713
            L+ L   IS ++    KN ++ +L  LP   ++ L + W  +QELLR FW+ YPITS  L
Sbjct: 473  LNELNEGISRSRRLNLKNPQEGLLGQLPQHTRDELMDHWTAIQELLRHFWSSYPITSAVL 532

Query: 1714 SNKVGKLKDTMAQIYEKLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1890
             NKV ++K+ M QIY+KLQ  K  A+P+ RH+IS L+ PM QALDAAF H+  + QK S
Sbjct: 533  YNKVQRVKEAMTQIYQKLQLIKELAQPDVRHEISRLVKPMTQALDAAFNHDLEQQQKSS 591


>ref|XP_002530618.1| TFIIH basal transcription factor complex subunit, putative [Ricinus
            communis] gi|223529828|gb|EEF31761.1| TFIIH basal
            transcription factor complex subunit, putative [Ricinus
            communis]
          Length = 597

 Score =  479 bits (1232), Expect = e-132
 Identities = 266/595 (44%), Positives = 366/595 (61%), Gaps = 7/595 (1%)
 Frame = +1

Query: 127  MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 306
            M + Q + R  YK ++K PG PG L LT +K  F PN+P + S  KLD++FK +  HK +
Sbjct: 1    MASKQVTKRVKYKTSLKDPGTPGRLLLTMEKLAFRPNNPNSAS--KLDMDFKYVTNHKNT 58

Query: 307  KETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQAPPDNRD 486
            KE +A+A+LNL  +   +G  +IFEF N ++  +C+++V K L+K   T      P+   
Sbjct: 59   KEGSAKAMLNLTSN---QGVSYIFEFENHDDLRICKEIVGKALSKLGDTPKPPDAPEVPS 115

Query: 487  VLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQMTG 666
               + E++  RM +LR+N +LQKLH + V  +VLT++EFWA R+ L+  E S+  KQ  G
Sbjct: 116  DQPSTEELLLRMNLLRENLELQKLHKQFVSDRVLTDSEFWATRKKLLNGEFSRKSKQRVG 175

Query: 667  LKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFWTKY 846
            LKS MLAD       Q+N V F+LTPEI+ +IFAEKPAV QAYL  VP KMS+ DFWTKY
Sbjct: 176  LKSVMLADSKPLIDGQTNKVTFNLTPEIVREIFAEKPAVHQAYLSLVPNKMSERDFWTKY 235

Query: 847  CRAEYFYRSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMASDLADDY 1026
            CRAEY  RS+                   K D+ILA ETR+KIR VDPT+DM +D  DDY
Sbjct: 236  CRAEYLQRSRNIHAAAAEAAEDEELALFLKPDDILASETRQKIRCVDPTLDMEADQGDDY 295

Query: 1027 THLPGHGILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVAQGL 1206
            THLP HGI+RD  ++ I+      +RT L+D+NRHAAVVLEG  + +    DT++VA  L
Sbjct: 296  THLPDHGIVRDGSKDVIESQHEPYRRTLLQDLNRHAAVVLEGTAIDDEQLQDTKAVADAL 355

Query: 1207 VRVNKGKANTVDKLSD----ERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQ 1374
             R  +G   T+++ +D    + R NR+ +M +IEDLQG      A LCIKDPR YFDSQQ
Sbjct: 356  ARSKRG-IKTINREADGNANQERSNRISQMMEIEDLQGSNDHHLAPLCIKDPRDYFDSQQ 414

Query: 1375 ANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRIGENGLKDPIMNPQLAVKVLDNLT 1548
            A+ +    +      A   +L   E Y SL +++++    GL DPI+ P++A KVL  LT
Sbjct: 415  ASALKNSRDIPSGTEAARCSLSSQEAYASLRDSITQTKAMGLNDPIVKPEIATKVLSILT 474

Query: 1549 HYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQWKTVQELLRMFWACYPITSTFLSNKVG 1728
            H ISST+ H GKN+ + VL  LP   +  L   W +++ELLR +W+ YPIT+ +L  KV 
Sbjct: 475  HNISSTKYHLGKNSRESVLDRLPNTIKEELLHHWMSIEELLRHYWSSYPITTAYLYAKVS 534

Query: 1729 KLKDTMAQIYEKLQSTKASAKPESR-HQISLLIHPMLQALDAAFAHNEAESQKRS 1890
            +LKD M++I  +LQ  K S + +   H  SL I P   AL+AA  H +A+ QKRS
Sbjct: 535  RLKDAMSKIDSQLQEMKESVQSDLXFHATSLGIVP---ALEAAMQHYDADLQKRS 586


>ref|XP_004496077.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Cicer arietinum]
          Length = 586

 Score =  478 bits (1231), Expect = e-132
 Identities = 263/583 (45%), Positives = 367/583 (62%), Gaps = 3/583 (0%)
 Frame = +1

Query: 151  RATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAAQA- 327
            RA YK TVK PG PGVL LT++K  F PNDP   SN +++V+F+ IK HK +KE + +  
Sbjct: 10   RAKYKTTVKDPGTPGVLKLTQEKLVFKPNDPT--SNNRVEVDFRLIKNHKHTKEGSNKPP 67

Query: 328  LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQAPPDNRDVLLNVED 507
             LNL        G +IFE  NF + +VCR+LV   L+K+ +      P    D  L+  +
Sbjct: 68   WLNLGHSQ----GSYIFELENFSDLHVCRELVGIALSKHVEP-----PKVVSDEQLSPAE 118

Query: 508  MECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQMTGLKSAMLA 687
            M  R+++L+++S LQKLH +LV    LTE+EFWA ++ L++++ S+  KQ  G K++++ 
Sbjct: 119  MTLRIKLLQEDSKLQKLHKDLVASGKLTESEFWATKKKLLDQDESRKLKQRIGFKNSLIF 178

Query: 688  DMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFWTKYCRAEYFY 867
            D   T   + N VKF LTPEI YQIFA KPAV QA+L  VP KMS+VDFW KY +AEY +
Sbjct: 179  DTKPTSDGRINQVKFQLTPEIKYQIFALKPAVHQAFLNFVPSKMSEVDFWNKYFKAEYIH 238

Query: 868  RSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMASDLADDYTHLPGHG 1047
             +K                   KDDEIL +E R+K+R+VDPT+DM +D  DDYTHLP HG
Sbjct: 239  STKNTIAAAAEAAEDEDLAVFLKDDEILENEARKKVRRVDPTLDMEADQGDDYTHLPDHG 298

Query: 1048 ILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVAQGLVRVNKGK 1227
            I RD  +E  +      +RT L+D+NR + VVLEG+TL + D    R+VA+ L R    +
Sbjct: 299  IFRDGSKETAEAQNTFYRRTLLQDLNRQSEVVLEGKTL-DMDMEHPRTVAEVLAR----R 353

Query: 1228 ANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQANGMYAQGEKR 1407
                D + +E R+NR+ +MT+IEDLQ      FA LCIKDPR YFDSQQ N + +  +  
Sbjct: 354  KQESDGVIEEERRNRISKMTQIEDLQAQDDHRFAPLCIKDPRDYFDSQQVNALKSLDDSL 413

Query: 1408 DFRTAEHFNL--DETYDSLANAVSRIGENGLKDPIMNPQLAVKVLDNLTHYISSTQPHKG 1581
              +     NL  +E Y SL  ++S+I   GL DP+++P++A KVL+ LT  ISST+ H G
Sbjct: 414  AGKEQIRCNLGSEEAYGSLRESISKIKAIGLMDPLLSPEVAFKVLNGLTKNISSTKSHLG 473

Query: 1582 KNAEKDVLSSLPIIEQNALKEQWKTVQELLRMFWACYPITSTFLSNKVGKLKDTMAQIYE 1761
            K++++ VL  LP   +  L + W   QELLR FW+ YP+T+  L NK  ++KD ++QIY 
Sbjct: 474  KSSQESVLDILPNTTKEKLLDHWVCSQELLRHFWSSYPVTTQNLVNKTKRMKDAISQIYS 533

Query: 1762 KLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1890
            KL+  K SAK + RHQ+SL++HPM QALDAA  H +A+ +KR+
Sbjct: 534  KLEEIKVSAKSDLRHQVSLVVHPMQQALDAALLHYDADVRKRN 576


>ref|XP_003591640.1| General transcription factor IIH subunit [Medicago truncatula]
            gi|355480688|gb|AES61891.1| General transcription factor
            IIH subunit [Medicago truncatula]
          Length = 586

 Score =  473 bits (1217), Expect = e-130
 Identities = 262/583 (44%), Positives = 359/583 (61%), Gaps = 3/583 (0%)
 Frame = +1

Query: 151  RATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAAQA- 327
            RA YK TVK PG PGV+ LT QK  F PNDP   SN KLDV+F+ IK+ K +KE + +  
Sbjct: 11   RAKYKSTVKDPGTPGVIKLTRQKVVFKPNDPT--SNNKLDVDFRLIKSQKNTKEGSTKPP 68

Query: 328  LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQAPPDNRDVLLNVED 507
             LNL+       G +IFEF +F + +VCR+  A I++K     P +AP    D  L+  +
Sbjct: 69   WLNLVHSQ----GSYIFEFESFSDLHVCREFAAGIISK-----PVEAPKVVSDEQLSTAE 119

Query: 508  MECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQMTGLKSAMLA 687
            M  RM++L ++S L+K+H ELVM   LTE+EFWA ++ L++++ S+  KQ  G K++++ 
Sbjct: 120  MTLRMKLLGEDSKLKKIHMELVMSDKLTESEFWATKKKLLDQDESRKLKQRIGFKNSLIF 179

Query: 688  DMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFWTKYCRAEYFY 867
            D   T   + N VKF LTPEI YQIFA KPAV QA+L  VP KMS+VDFW KY +AEY +
Sbjct: 180  DTKPTSDGRINQVKFQLTPEIKYQIFALKPAVHQAFLNFVPSKMSEVDFWNKYFKAEYLH 239

Query: 868  RSKTXXXXXXXXXXXXXXXXXXKDDEILADETRRKIRKVDPTVDMASDLADDYTHLPGHG 1047
             +K                   KDDEIL +E R+K+R+VDPT+DM +D  DDYTHLP HG
Sbjct: 240  STKNAIAAAAEAAEDEDLAVFLKDDEILENEARKKVRRVDPTLDMEADQGDDYTHLPDHG 299

Query: 1048 ILRDPGREHIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVAQGLVRVNKGK 1227
            I RD  +E  +      +RT L+D+NR + VVLEG+TL + D    R+  + L R     
Sbjct: 300  IFRDGSKETSEAQNTLYRRTLLQDLNRQSEVVLEGKTL-DIDMEHPRTAVEALARRKHES 358

Query: 1228 ANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQANGMYAQGEKR 1407
               V     E R+NR+ +M +IEDLQ      FA LCIKDPR YFDSQQAN +    +  
Sbjct: 359  DGVV-----EERRNRISKMAQIEDLQAQDDHPFAPLCIKDPRDYFDSQQANAVKTLDDSL 413

Query: 1408 DFRTAEHFNL--DETYDSLANAVSRIGENGLKDPIMNPQLAVKVLDNLTHYISSTQPHKG 1581
              +     NL  +E Y SL  ++S I   GL+DP+++ ++A KVL  LT  ISST+ + G
Sbjct: 414  SGKEKIRCNLGSEEAYGSLRESISNIKTMGLRDPLLSHEVAFKVLSELTKNISSTKSNLG 473

Query: 1582 KNAEKDVLSSLPIIEQNALKEQWKTVQELLRMFWACYPITSTFLSNKVGKLKDTMAQIYE 1761
            K++++ VL  LP   +  L + W   QELLR FW+ YP+T   L +K  +LKD ++QIY 
Sbjct: 474  KSSQESVLDILPNTTKEKLLDHWVCSQELLRHFWSSYPVTKQSLVDKARRLKDAISQIYS 533

Query: 1762 KLQSTKASAKPESRHQISLLIHPMLQALDAAFAHNEAESQKRS 1890
            KL+  K SAK + RHQ+SL++HPM QALDAA  H +A+  +R+
Sbjct: 534  KLEEIKVSAKSDLRHQVSLVVHPMQQALDAALLHYDADITRRN 576


>ref|XP_006452718.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
            gi|557555944|gb|ESR65958.1| hypothetical protein
            CICLE_v10007802mg [Citrus clementina]
          Length = 564

 Score =  472 bits (1215), Expect = e-130
 Identities = 255/561 (45%), Positives = 362/561 (64%), Gaps = 6/561 (1%)
 Frame = +1

Query: 226  FIPNDPRAPSNMKLDVNFKNIKTHKFSKETAAQA-LLNLMQDPAIKGGGFIFEFVNFEER 402
            F+P++    S  KL V FK+I+ HK++KE + +  L+NL      +GG +IFEF ++ + 
Sbjct: 2    FMPDNRN--SGAKLVVEFKSIQGHKYTKEGSNKPPLINLAN---AQGGSYIFEFDSYSDL 56

Query: 403  NVCRDLVAKILAKYQQTTP---QQAPPDNRDVLLNVEDMECRMQILRKNSDLQKLHYELV 573
            +VCRD V+K+L K ++T     +++     D  L+ E+M+ R+++L++NS+LQKLH + V
Sbjct: 57   HVCRDFVSKVLEKSKETPNAALEKSAVKLPDEQLSEEEMQLRIKLLQENSELQKLHRQFV 116

Query: 574  MGKVLTEAEFWAGRQHLIEEELSKNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEII 753
             G +LTEAEFWA R+ L++ + SK  KQ  G KSAM++D+      ++N V F LTPEII
Sbjct: 117  GGNILTEAEFWAARKKLLDRDPSKKSKQRVGFKSAMISDIRPATDGRTNKVTFSLTPEII 176

Query: 754  YQIFAEKPAVRQAYLKNVPQKMSDVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXX 933
             QIFAEKPAV +A+L  VP KM++++FWTKYCRAEY  R+K                   
Sbjct: 177  LQIFAEKPAVHRAFLNFVPNKMTEMEFWTKYCRAEYLSRTKNYHAVVAEAAEDEELAVFL 236

Query: 934  KDDEILADETRRKIRKVDPTVDMASDLADDYTHLPGHGILRDPGREHIDEDANQPKRTFL 1113
            K+D+ILA+E R+KIR+VDPT+DM +D  DDYTHLP HGI RD  +E  +  +   +RT L
Sbjct: 237  KEDDILANEVRKKIRRVDPTLDMEADEGDDYTHLPDHGIFRDGTKESNELQSEHYRRTLL 296

Query: 1114 KDINRHAAVVLEGQTLSESDFGDTRSVAQGLVRVNKGKANTVDKLSDERRKNRVHEMTKI 1293
            +D+NRHAAVVLEG+T+       TR++A+ L R  +G     D  ++E R +R   + +I
Sbjct: 297  QDLNRHAAVVLEGRTIDVEREDSTRALAEALARSKRGNEG-ADNNANEERLDRTPRVAEI 355

Query: 1294 EDLQGPQTLSFASLCIKDPRQYFDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANA 1467
            EDLQ P  L  A L IKD R+YFDSQQAN + A    RD + +   +L   E Y S+ +A
Sbjct: 356  EDLQAPHCLPLAPLSIKDAREYFDSQQANTLKA---SRDSQASMKCSLSRQEAYGSVRDA 412

Query: 1468 VSRIGENGLKDPIMNPQLAVKVLDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQ 1647
            +S I + GL DPI+NP++A+KV   LTH ISS + H GKN  + VL  LP   +  L   
Sbjct: 413  ISEIKDMGLSDPIVNPEVALKVYSGLTHNISSIKYHLGKNPRETVLDRLPSATKEKLLYH 472

Query: 1648 WKTVQELLRMFWACYPITSTFLSNKVGKLKDTMAQIYEKLQSTKASAKPESRHQISLLIH 1827
            W ++QELL+ FW+ YPIT+ +L +KV +LKD ++ IY +L+  K S   + RHQ+SLL+ 
Sbjct: 473  WMSIQELLKHFWSSYPITTPYLYSKVNRLKDALSNIYPQLEEMKESLPADLRHQVSLLVR 532

Query: 1828 PMLQALDAAFAHNEAESQKRS 1890
            PM QALDAA  H +A+ QKRS
Sbjct: 533  PMQQALDAAIQHYDADLQKRS 553