BLASTX nr result
ID: Ephedra26_contig00009409
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00009409
(940 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADE77788.1| unknown [Picea sitchensis] 381 e-103
ref|XP_002307429.2| basal transcription factor complex subunit-r... 304 4e-80
ref|XP_006472762.1| PREDICTED: general transcription factor IIH ... 302 1e-79
ref|XP_002284465.1| PREDICTED: general transcription factor IIH ... 296 8e-78
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ... 295 2e-77
ref|XP_006347459.1| PREDICTED: general transcription factor IIH ... 294 4e-77
ref|XP_004241513.1| PREDICTED: general transcription factor IIH ... 294 4e-77
gb|EOY16261.1| Basal transcription factor complex subunit-relate... 292 1e-76
ref|XP_006828057.1| hypothetical protein AMTR_s00008p00264310, p... 290 4e-76
gb|EMJ24450.1| hypothetical protein PRUPE_ppa009386mg [Prunus pe... 287 5e-75
ref|XP_006472763.1| PREDICTED: general transcription factor IIH ... 286 1e-74
ref|XP_004290858.1| PREDICTED: general transcription factor IIH ... 281 2e-73
ref|XP_004290857.1| PREDICTED: general transcription factor IIH ... 281 2e-73
ref|XP_006305456.1| hypothetical protein CARUB_v10009867mg [Caps... 281 3e-73
ref|NP_001045748.1| Os02g0125800 [Oryza sativa Japonica Group] g... 279 1e-72
ref|XP_004500559.1| PREDICTED: general transcription factor IIH ... 278 2e-72
ref|XP_004500558.1| PREDICTED: general transcription factor IIH ... 278 2e-72
ref|XP_003601046.1| General transcription factor IIH subunit [Me... 278 2e-72
ref|NP_564050.1| basal transcription factor complex subunit-rela... 278 2e-72
ref|XP_006416613.1| hypothetical protein EUTSA_v10008316mg [Eutr... 277 4e-72
>gb|ADE77788.1| unknown [Picea sitchensis]
Length = 306
Score = 381 bits (978), Expect = e-103
Identities = 191/281 (67%), Positives = 215/281 (76%), Gaps = 6/281 (2%)
Frame = -3
Query: 833 MDSSAANAPQXXXXXXXXXXDTNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSIL 654
M S+ +N PQ DTNPFFW AS LTF+QFLEH AFFNS+L
Sbjct: 6 MASAGSNPPQDDVSLVVVLLDTNPFFWASATSSGQ----ASSLTFSQFLEHVLAFFNSLL 61
Query: 653 LLHQLNHLVVIGTGMNTCEFIYDSTT------KVKELKGFNEFMTPSTLISQNLEEFVKK 492
LLHQ+N LVVIGTG N+CEFIYDS+T K K+ K EF+TPST+I Q LE+FV++
Sbjct: 62 LLHQMNQLVVIGTGTNSCEFIYDSSTTNSEYKKSKDTKCSQEFLTPSTIIVQQLEDFVRR 121
Query: 491 DHELYKNNTETKNMYXXXXXXXXXXLCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGV 312
D L NN TKN++ LCYIQR+IR HPQPRILCLQGSPDGPQQ+V +
Sbjct: 122 DQALNTNNNATKNIHSLLSGSLSMALCYIQRIIRGGPSHPQPRILCLQGSPDGPQQYVAI 181
Query: 311 MNAIFSAQRSMIPIDACIVGSEHSAFLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLH 132
MNAIFSAQRSM+P+D+CIVGS+HSAFLQQASHITGGIYLKPQ ++GLFQFLAMVFATDLH
Sbjct: 182 MNAIFSAQRSMVPVDSCIVGSQHSAFLQQASHITGGIYLKPQQLEGLFQFLAMVFATDLH 241
Query: 131 SRRFLQLPRPTGVDFRASCFCHKKAIDMGYVCSVCLSIFCE 9
SRRFLQLPRPTGVDFRASCFCHKK IDMGYVCSVCLSIFCE
Sbjct: 242 SRRFLQLPRPTGVDFRASCFCHKKTIDMGYVCSVCLSIFCE 282
>ref|XP_002307429.2| basal transcription factor complex subunit-related family protein
[Populus trichocarpa] gi|550339079|gb|EEE94425.2| basal
transcription factor complex subunit-related family
protein [Populus trichocarpa]
Length = 298
Score = 304 bits (778), Expect = 4e-80
Identities = 155/255 (60%), Positives = 184/255 (72%), Gaps = 2/255 (0%)
Frame = -3
Query: 770 TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 591
TNPFFW S L+F+QFL H AF NSILLL+QLN +VVI +G NTC++I
Sbjct: 22 TNPFFW----------TPPSSLSFSQFLSHVLAFVNSILLLNQLNQVVVIASGYNTCDYI 71
Query: 590 YDSTTKVKELKGFNEFMTPSTL--ISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXX 417
YDS++ +L G + PS + Q LEEF+ KD +L K ++
Sbjct: 72 YDSSSDASQL-GSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSLLSGSLSMA 130
Query: 416 LCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSA 237
LCYIQRV RS HPQPRILCLQGSPDGP+Q+V VMNAIFSAQRSM+PID+C VG+ +SA
Sbjct: 131 LCYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGAHNSA 190
Query: 236 FLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKA 57
FLQQAS+ITGG+Y+KPQ + GLFQ+L VFATDLHSR F+QLPRP GVDFRASCFCHK
Sbjct: 191 FLQQASYITGGVYVKPQHLDGLFQYLTTVFATDLHSRSFIQLPRPAGVDFRASCFCHKTT 250
Query: 56 IDMGYVCSVCLSIFC 12
IDMGY+CSVCLSIFC
Sbjct: 251 IDMGYICSVCLSIFC 265
>ref|XP_006472762.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
X1 [Citrus sinensis]
Length = 298
Score = 302 bits (773), Expect = 1e-79
Identities = 147/256 (57%), Positives = 184/256 (71%)
Frame = -3
Query: 770 TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 591
TNPFFW +S L+F+QFL H AFFN+IL L+QLN +VVI TG N+C+++
Sbjct: 22 TNPFFWS-----------SSSLSFSQFLTHVLAFFNAILTLNQLNQVVVIATGYNSCDYV 70
Query: 590 YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLC 411
YDS++ + G + + QNLEEF+ KD +L K E + LC
Sbjct: 71 YDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALC 130
Query: 410 YIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFL 231
YIQRV RS HPQPRILCLQGSPDGP+Q+V +MNAIFSAQRSM+PID+C +G+++SAFL
Sbjct: 131 YIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFL 190
Query: 230 QQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKAID 51
QQAS+ITGG++ KPQ + GLFQ+L +F TDLHSR FLQLP+P GVDFRASCFCHK ID
Sbjct: 191 QQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTID 250
Query: 50 MGYVCSVCLSIFCEPL 3
MGY+CSVCLSI+C+ L
Sbjct: 251 MGYICSVCLSIYCKHL 266
>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
product [Vitis vinifera]
Length = 297
Score = 296 bits (758), Expect = 8e-78
Identities = 153/256 (59%), Positives = 182/256 (71%), Gaps = 2/256 (0%)
Frame = -3
Query: 770 TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 591
TNPFFW + L F++FL H AF NSILL++QLN +VVI TG N+C FI
Sbjct: 22 TNPFFWS-----------TASLPFSKFLSHVLAFLNSILLINQLNQVVVIATGCNSCNFI 70
Query: 590 YDSTTKVKELKGFNEFMTP--STLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXX 417
+DS++ N M S L+ Q LEEFV D +L K
Sbjct: 71 FDSSSVPANPNLENGRMPALCSNLL-QKLEEFVTGDEKLSKEVLAAGIGSSLLSGSLSMA 129
Query: 416 LCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSA 237
LCYIQRV R+ HPQPRILCLQGSPDGP+Q+V VMNAIFSAQRSM+PID+C++G++HSA
Sbjct: 130 LCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSA 189
Query: 236 FLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKA 57
FLQQAS+ITGG+YLKPQ + GLFQ+L+ VFATDLHSRRFLQLP+P GVDFRASCFCHK
Sbjct: 190 FLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPAGVDFRASCFCHKNT 249
Query: 56 IDMGYVCSVCLSIFCE 9
IDMGY+CSVCLSIFC+
Sbjct: 250 IDMGYICSVCLSIFCK 265
>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
sativus]
Length = 295
Score = 295 bits (754), Expect = 2e-77
Identities = 149/256 (58%), Positives = 184/256 (71%), Gaps = 2/256 (0%)
Frame = -3
Query: 770 TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 591
TNPFFW S L F++FL H AF NSIL+L+QLN +VVIGTG +C+++
Sbjct: 22 TNPFFWS-----------TSALPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYL 70
Query: 590 YDSTTKVKELKGFNEFMTPS--TLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXX 417
Y+S++ G + P+ T + +NLEEFV D + K + + M
Sbjct: 71 YNSSSYSNH--GLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMA 128
Query: 416 LCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSA 237
LCYIQ+V RS + HPQPRILCLQGSPDGP+Q+V +MNAIFSAQRSM+PID+C +GS +SA
Sbjct: 129 LCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSA 188
Query: 236 FLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKA 57
FLQQAS+ITGG+YLKPQ + GLFQ+L+ VF TDLHSR FLQLP+ GVDFRASCFCHKK
Sbjct: 189 FLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKT 248
Query: 56 IDMGYVCSVCLSIFCE 9
IDMGYVCSVCLSIFC+
Sbjct: 249 IDMGYVCSVCLSIFCK 264
>ref|XP_006347459.1| PREDICTED: general transcription factor IIH subunit 3-like [Solanum
tuberosum]
Length = 290
Score = 294 bits (752), Expect = 4e-77
Identities = 146/254 (57%), Positives = 181/254 (71%)
Frame = -3
Query: 770 TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 591
TNP+FW KN+ TF +F+ H AF NSILLL+Q+N +VVI TG N+C+++
Sbjct: 22 TNPYFWSSM--KNTA------FTFPKFISHVLAFLNSILLLNQMNQVVVIATGYNSCDYV 73
Query: 590 YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLC 411
+DS+T M + + + LE+FV KD L + ++ + LC
Sbjct: 74 FDSSTSS---------MQRAECLLEKLEDFVDKDESLSQEDSVDGVGFSLLSGSLSMALC 124
Query: 410 YIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFL 231
YIQRV RS HPQPRILCL GSPDGP Q+V VMN+IFSAQRSM+PID+C++GS+HSAFL
Sbjct: 125 YIQRVFRSGPLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMVPIDSCVIGSQHSAFL 184
Query: 230 QQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKAID 51
QQAS+ITGG+YLKPQ GLFQ+L+ VFATDLHSR FLQLPRP GVDFRASCFCHK ID
Sbjct: 185 QQASYITGGVYLKPQVSDGLFQYLSTVFATDLHSRSFLQLPRPVGVDFRASCFCHKNTID 244
Query: 50 MGYVCSVCLSIFCE 9
MG++CSVCLSIFC+
Sbjct: 245 MGFICSVCLSIFCK 258
>ref|XP_004241513.1| PREDICTED: general transcription factor IIH subunit 3-like [Solanum
lycopersicum]
Length = 290
Score = 294 bits (752), Expect = 4e-77
Identities = 146/254 (57%), Positives = 181/254 (71%)
Frame = -3
Query: 770 TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 591
TNP+FW KN+ TF +F+ H AF NSILLL+Q+N +VVI TG N+C+++
Sbjct: 22 TNPYFWSSM--KNTA------FTFPKFISHVLAFLNSILLLNQMNQVVVIATGYNSCDYV 73
Query: 590 YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLC 411
+DS+T M + + + LE+FV KD L + ++ + LC
Sbjct: 74 FDSSTSS---------MQRAECLLEKLEDFVDKDESLSQEDSVDGVGFSLLSGALSMALC 124
Query: 410 YIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFL 231
YIQRV RS HPQPRILCL GSPDGP Q+V VMN+IFSAQRSM+PID+C++GS+HSAFL
Sbjct: 125 YIQRVFRSGPLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMVPIDSCVIGSQHSAFL 184
Query: 230 QQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKAID 51
QQAS+ITGG+YLKPQ GLFQ+L+ VFATDLHSR FLQLPRP GVDFRASCFCHK ID
Sbjct: 185 QQASYITGGVYLKPQVSDGLFQYLSTVFATDLHSRSFLQLPRPVGVDFRASCFCHKNTID 244
Query: 50 MGYVCSVCLSIFCE 9
MG++CSVCLSIFC+
Sbjct: 245 MGFICSVCLSIFCK 258
>gb|EOY16261.1| Basal transcription factor complex subunit-related isoform 1
[Theobroma cacao]
Length = 296
Score = 292 bits (747), Expect = 1e-76
Identities = 144/254 (56%), Positives = 179/254 (70%)
Frame = -3
Query: 770 TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 591
TNPFFW AS L+F+QFL H AF N+IL L+QLN +VVI TG N+C +I
Sbjct: 22 TNPFFWS-----------ASSLSFSQFLSHVLAFLNAILTLNQLNQVVVIATGYNSCNYI 70
Query: 590 YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLC 411
+DS++ + + + + Q LEEF+ KD +L K E + LC
Sbjct: 71 FDSSSDLNQSFENGRMPVMCSSLLQKLEEFLIKDEQLSKEVPEGRIKSSLLSGSLSMALC 130
Query: 410 YIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFL 231
YIQRV RS HP PRILCLQGSPDGP+Q+V +MNAIFSAQRSM+PID+C +G+++SAFL
Sbjct: 131 YIQRVFRSGALHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYMGAQNSAFL 190
Query: 230 QQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKAID 51
QQAS+ITGG++ KPQ + GLFQ+L +FATDLHSR FL LP+P GVDFRASCFCHK ID
Sbjct: 191 QQASYITGGVHHKPQHLDGLFQYLMTIFATDLHSRSFLHLPKPVGVDFRASCFCHKNTID 250
Query: 50 MGYVCSVCLSIFCE 9
MGY+CSVCLSIFC+
Sbjct: 251 MGYICSVCLSIFCK 264
>ref|XP_006828057.1| hypothetical protein AMTR_s00008p00264310, partial [Amborella
trichopoda] gi|548832692|gb|ERM95473.1| hypothetical
protein AMTR_s00008p00264310, partial [Amborella
trichopoda]
Length = 277
Score = 290 bits (743), Expect = 4e-76
Identities = 148/256 (57%), Positives = 181/256 (70%), Gaps = 2/256 (0%)
Frame = -3
Query: 770 TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 591
TNP+FWG F+QFL F NSILLL+QLN LVVI TG+N+C+++
Sbjct: 22 TNPYFWGAM---------NGAAAFSQFLNQVLPFLNSILLLNQLNQLVVIATGVNSCDYL 72
Query: 590 YDSTTKVKELKGFNEFMTP--STLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXX 417
YDS+ E + + P S I Q LE+F+ KD +L ++ +
Sbjct: 73 YDSSRVGHESEKRSTKGIPGHSLEILQKLEDFIAKDQQLSNSDEAPGKICSLLSGSLSLA 132
Query: 416 LCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSA 237
LCYIQR++R+ HPQPRILCLQ SPDG +Q+V +MNAIFSAQRSM+PID+C+VGSE SA
Sbjct: 133 LCYIQRILRTGPVHPQPRILCLQASPDGSEQYVAIMNAIFSAQRSMVPIDSCVVGSEDSA 192
Query: 236 FLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKA 57
FLQQAS+ITGG+Y KPQ + GLFQ L+MVFATDLHSRRFL+LP PTGVDFRASCFCHK+
Sbjct: 193 FLQQASYITGGVYQKPQHLDGLFQCLSMVFATDLHSRRFLKLPTPTGVDFRASCFCHKEP 252
Query: 56 IDMGYVCSVCLSIFCE 9
I MGYVCSVCLSIFC+
Sbjct: 253 IGMGYVCSVCLSIFCK 268
>gb|EMJ24450.1| hypothetical protein PRUPE_ppa009386mg [Prunus persica]
Length = 295
Score = 287 bits (734), Expect = 5e-75
Identities = 148/254 (58%), Positives = 173/254 (68%)
Frame = -3
Query: 770 TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 591
TNPFFW +S L F+ FL H F NSILLL+QLN +VVI TG N+C +I
Sbjct: 22 TNPFFWS-----------SSSLPFSVFLSHVLTFLNSILLLNQLNQVVVIATGYNSCSYI 70
Query: 590 YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLC 411
YDS+T + + Q LEEFV +D +L K LC
Sbjct: 71 YDSSTSTNQGSDNGRMPARCVNLLQKLEEFVIEDEQLIKEGLREGIASSLLSGSLSMALC 130
Query: 410 YIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFL 231
YIQRV RS HPQPRILCLQGS DGP+Q+V +MNAIFSAQRS +PID+C +GS +SAFL
Sbjct: 131 YIQRVFRSGPLHPQPRILCLQGSSDGPEQYVAIMNAIFSAQRS-VPIDSCYMGSSNSAFL 189
Query: 230 QQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKAID 51
QQAS+ITGG+YLKPQ GLFQ+L+ VFATDLHSR FLQLP+ GVDFRASCFCHKK ID
Sbjct: 190 QQASYITGGVYLKPQQPNGLFQYLSTVFATDLHSRAFLQLPKSLGVDFRASCFCHKKTID 249
Query: 50 MGYVCSVCLSIFCE 9
MGY+CSVCLSIFC+
Sbjct: 250 MGYICSVCLSIFCK 263
>ref|XP_006472763.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
X2 [Citrus sinensis]
Length = 293
Score = 286 bits (731), Expect = 1e-74
Identities = 142/256 (55%), Positives = 179/256 (69%)
Frame = -3
Query: 770 TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 591
TNPFFW +S L+F+QFL H AFFN+IL L+QLN +VVI TG N+C+++
Sbjct: 22 TNPFFWS-----------SSSLSFSQFLTHVLAFFNAILTLNQLNQVVVIATGYNSCDYV 70
Query: 590 YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLC 411
YDS++ + G + + QNLEEF+ KD +L K E + LC
Sbjct: 71 YDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALC 130
Query: 410 YIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFL 231
YIQRV RS HPQPR GSPDGP+Q+V +MNAIFSAQRSM+PID+C +G+++SAFL
Sbjct: 131 YIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFL 185
Query: 230 QQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKAID 51
QQAS+ITGG++ KPQ + GLFQ+L +F TDLHSR FLQLP+P GVDFRASCFCHK ID
Sbjct: 186 QQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTID 245
Query: 50 MGYVCSVCLSIFCEPL 3
MGY+CSVCLSI+C+ L
Sbjct: 246 MGYICSVCLSIYCKHL 261
>ref|XP_004290858.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
2 [Fragaria vesca subsp. vesca]
Length = 298
Score = 281 bits (720), Expect = 2e-73
Identities = 142/254 (55%), Positives = 172/254 (67%)
Frame = -3
Query: 770 TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 591
TNPFFW +S L F+++L H F NSILLL+QLN +VVI TG ++C +I
Sbjct: 22 TNPFFWS-----------SSSLPFSKYLSHVLTFLNSILLLNQLNQVVVIATGYSSCSYI 70
Query: 590 YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLC 411
YDS + + + + + LEEFV KD +L K + LC
Sbjct: 71 YDSASAPGQGSDQGRMPALCSHLLKKLEEFVAKDEQLLKEGSAEGIPSSLLSGSLSMALC 130
Query: 410 YIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFL 231
YIQ+V RS HP PRILCLQGS DGP+Q+V +MNAIFSAQRSM+PID+C +GS +SAFL
Sbjct: 131 YIQKVFRSGPQHPHPRILCLQGSSDGPEQYVAIMNAIFSAQRSMVPIDSCYMGSNNSAFL 190
Query: 230 QQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKAID 51
QQAS+ITGG+YLKPQ GL Q+L VFATDLHSR FLQLP+ GVDFRASCFCHKK ID
Sbjct: 191 QQASYITGGVYLKPQQPDGLLQYLTTVFATDLHSRAFLQLPKSAGVDFRASCFCHKKTID 250
Query: 50 MGYVCSVCLSIFCE 9
GY+CSVCLSIFC+
Sbjct: 251 TGYICSVCLSIFCK 264
>ref|XP_004290857.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
1 [Fragaria vesca subsp. vesca]
Length = 300
Score = 281 bits (720), Expect = 2e-73
Identities = 142/254 (55%), Positives = 172/254 (67%)
Frame = -3
Query: 770 TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 591
TNPFFW +S L F+++L H F NSILLL+QLN +VVI TG ++C +I
Sbjct: 22 TNPFFWS-----------SSSLPFSKYLSHVLTFLNSILLLNQLNQVVVIATGYSSCSYI 70
Query: 590 YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLC 411
YDS + + + + + LEEFV KD +L K + LC
Sbjct: 71 YDSASAPGQGSDQGRMPALCSHLLKKLEEFVAKDEQLLKEGSAEGIPSSLLSGSLSMALC 130
Query: 410 YIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFL 231
YIQ+V RS HP PRILCLQGS DGP+Q+V +MNAIFSAQRSM+PID+C +GS +SAFL
Sbjct: 131 YIQKVFRSGPQHPHPRILCLQGSSDGPEQYVAIMNAIFSAQRSMVPIDSCYMGSNNSAFL 190
Query: 230 QQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKAID 51
QQAS+ITGG+YLKPQ GL Q+L VFATDLHSR FLQLP+ GVDFRASCFCHKK ID
Sbjct: 191 QQASYITGGVYLKPQQPDGLLQYLTTVFATDLHSRAFLQLPKSAGVDFRASCFCHKKTID 250
Query: 50 MGYVCSVCLSIFCE 9
GY+CSVCLSIFC+
Sbjct: 251 TGYICSVCLSIFCK 264
>ref|XP_006305456.1| hypothetical protein CARUB_v10009867mg [Capsella rubella]
gi|482574167|gb|EOA38354.1| hypothetical protein
CARUB_v10009867mg [Capsella rubella]
Length = 301
Score = 281 bits (719), Expect = 3e-73
Identities = 145/259 (55%), Positives = 184/259 (71%), Gaps = 5/259 (1%)
Frame = -3
Query: 770 TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 591
TNPFFW + +TF+QFL H AF N++L L+QLN +VVI TG ++CE+I
Sbjct: 22 TNPFFWS-----------TTSITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCEYI 70
Query: 590 YDS--TTKVKELKGFNEFMTP--STLISQNLEEFVKKDHELYKNN-TETKNMYXXXXXXX 426
YDS T+ + M P ++L+++ LE+FV KD EL + E +
Sbjct: 71 YDSSLTSNHGSFERDRTGMPPLFASLLNK-LEDFVTKDEELSREEGNEDRTPSCLLSGSL 129
Query: 425 XXXLCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSE 246
LCYIQRV RS + HPQPRILCLQGSPDGP+Q+V VMN+IFSAQR M+PID+C +G +
Sbjct: 130 SMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQ 189
Query: 245 HSAFLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCH 66
+SAFLQQAS+ITGG++ P+ + GLFQ+L +FATDLHSR F+QLP+P GVDFRASCFCH
Sbjct: 190 NSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDFRASCFCH 249
Query: 65 KKAIDMGYVCSVCLSIFCE 9
KK IDMGY+CSVCLSIFCE
Sbjct: 250 KKTIDMGYICSVCLSIFCE 268
>ref|NP_001045748.1| Os02g0125800 [Oryza sativa Japonica Group]
gi|41053068|dbj|BAD08012.1| putative TFIIH basal
transcription factor complex p34 subunit [Oryza sativa
Japonica Group] gi|113535279|dbj|BAF07662.1|
Os02g0125800 [Oryza sativa Japonica Group]
gi|215768495|dbj|BAH00724.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 289
Score = 279 bits (714), Expect = 1e-72
Identities = 142/256 (55%), Positives = 174/256 (67%), Gaps = 2/256 (0%)
Frame = -3
Query: 770 TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 591
TNP FW + L FA F H + NS+LLL+ LNH+VVI G+++C +I
Sbjct: 20 TNPLFWA-----------TAALPFADFFAHLIHYVNSLLLLNHLNHVVVIAAGLSSCTYI 68
Query: 590 YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETK--NMYXXXXXXXXXX 417
+DS+ G + S+ ++EF+ +D +N N
Sbjct: 69 FDSSDA--SASGAADVAATFAKASRKMDEFIAEDARATSSNGSVADGNAASLLSGALSLA 126
Query: 416 LCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSA 237
LCYIQRV RS HPQPRILCLQGSPDGP+Q+V VMN+IFSAQRSM+PID+CIVG++ SA
Sbjct: 127 LCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSCIVGTQDSA 186
Query: 236 FLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKA 57
FLQQAS+ITGG+YLKPQ + GLFQ+LA VFATDLHSR FL+LP+ GVDFRASCFCHKK
Sbjct: 187 FLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRTFLRLPKTLGVDFRASCFCHKKT 246
Query: 56 IDMGYVCSVCLSIFCE 9
IDMGYVCSVCLSIFC+
Sbjct: 247 IDMGYVCSVCLSIFCK 262
>ref|XP_004500559.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
X2 [Cicer arietinum]
Length = 294
Score = 278 bits (711), Expect = 2e-72
Identities = 142/254 (55%), Positives = 169/254 (66%)
Frame = -3
Query: 770 TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 591
TNPFFW P F++FL AF NSILLL QLN LVVI TG N+C +I
Sbjct: 22 TNPFFW-----------TTFPFHFSEFLSQVLAFLNSILLLGQLNQLVVIATGCNSCGYI 70
Query: 590 YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLC 411
YDST+ + + NLEEF+ +D +L + LC
Sbjct: 71 YDSTSNRNHASTNGTMPALYSNLLHNLEEFLARDQKLTMPHAPVTVPSSLLSGSLSMALC 130
Query: 410 YIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFL 231
YIQR RS HPQPRILCLQGS DGP+Q+V +MNAIFSAQRS +P+D+C +GS +SAFL
Sbjct: 131 YIQRAFRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQRSSVPVDSCYIGSNNSAFL 190
Query: 230 QQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKAID 51
QQAS+ITGGIY +P + GLFQ+L+ VFATDLHSR FL+LP+ GVDFRASCFCHK+ ID
Sbjct: 191 QQASYITGGIYYRPPQMDGLFQYLSTVFATDLHSRAFLRLPKSLGVDFRASCFCHKQTID 250
Query: 50 MGYVCSVCLSIFCE 9
MGYVCSVCLSIFCE
Sbjct: 251 MGYVCSVCLSIFCE 264
>ref|XP_004500558.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
X1 [Cicer arietinum]
Length = 315
Score = 278 bits (711), Expect = 2e-72
Identities = 142/254 (55%), Positives = 169/254 (66%)
Frame = -3
Query: 770 TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 591
TNPFFW P F++FL AF NSILLL QLN LVVI TG N+C +I
Sbjct: 22 TNPFFW-----------TTFPFHFSEFLSQVLAFLNSILLLGQLNQLVVIATGCNSCGYI 70
Query: 590 YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNTETKNMYXXXXXXXXXXLC 411
YDST+ + + NLEEF+ +D +L + LC
Sbjct: 71 YDSTSNRNHASTNGTMPALYSNLLHNLEEFLARDQKLTMPHAPVTVPSSLLSGSLSMALC 130
Query: 410 YIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEHSAFL 231
YIQR RS HPQPRILCLQGS DGP+Q+V +MNAIFSAQRS +P+D+C +GS +SAFL
Sbjct: 131 YIQRAFRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQRSSVPVDSCYIGSNNSAFL 190
Query: 230 QQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHKKAID 51
QQAS+ITGGIY +P + GLFQ+L+ VFATDLHSR FL+LP+ GVDFRASCFCHK+ ID
Sbjct: 191 QQASYITGGIYYRPPQMDGLFQYLSTVFATDLHSRAFLRLPKSLGVDFRASCFCHKQTID 250
Query: 50 MGYVCSVCLSIFCE 9
MGYVCSVCLSIFCE
Sbjct: 251 MGYVCSVCLSIFCE 264
>ref|XP_003601046.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355490094|gb|AES71297.1| General transcription factor
IIH subunit [Medicago truncatula]
Length = 340
Score = 278 bits (711), Expect = 2e-72
Identities = 141/258 (54%), Positives = 174/258 (67%), Gaps = 4/258 (1%)
Frame = -3
Query: 770 TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 591
TNPFFW + P F++FL AF NSILLL QLN +VVI TG N+C ++
Sbjct: 23 TNPFFWS-----------SFPFHFSEFLSQVLAFLNSILLLGQLNQVVVIATGCNSCSYV 71
Query: 590 YDSTTKVKELKGFNEFMTPSTLISQNLEEFVKKDHEL----YKNNTETKNMYXXXXXXXX 423
YDS + + + NL+EFV KD +L +K T ++
Sbjct: 72 YDSASDKNHASTNGTMPAIYSNLLHNLDEFVAKDQQLTTPHHKPGTIPSSLLSGALSMAL 131
Query: 422 XXLCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEH 243
CYIQR RS HPQPRILCLQGS DGP+Q+V +MNAIFSAQRS++P+D+C +GS +
Sbjct: 132 ---CYIQRAFRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQRSVVPVDSCFIGSNN 188
Query: 242 SAFLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHK 63
SAFLQQAS+ITGGIY +P ++GLFQ+L+ VFATDLHSR FL+LP+ GVDFRASCFCHK
Sbjct: 189 SAFLQQASYITGGIYYRPPQMEGLFQYLSTVFATDLHSREFLRLPKSLGVDFRASCFCHK 248
Query: 62 KAIDMGYVCSVCLSIFCE 9
+ IDMGYVCSVCLSIFCE
Sbjct: 249 QTIDMGYVCSVCLSIFCE 266
>ref|NP_564050.1| basal transcription factor complex subunit-related protein
[Arabidopsis thaliana] gi|21537277|gb|AAM61618.1|
unknown [Arabidopsis thaliana]
gi|92856638|gb|ABE77412.1| At1g18340 [Arabidopsis
thaliana] gi|332191584|gb|AEE29705.1| basal
transcription factor complex subunit-related protein
[Arabidopsis thaliana]
Length = 301
Score = 278 bits (711), Expect = 2e-72
Identities = 144/259 (55%), Positives = 180/259 (69%), Gaps = 5/259 (1%)
Frame = -3
Query: 770 TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 591
TNP FW + +TF+QFL H AF N++L L+QLN +VVI TG ++C++I
Sbjct: 22 TNPLFWS-----------TTSITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYI 70
Query: 590 YDSTTKVK----ELKGFNEFMTPSTLISQNLEEFVKKDHELYKNN-TETKNMYXXXXXXX 426
YDS+ E G +L+ + LEEFV KD EL K +E +
Sbjct: 71 YDSSLTSNHGNFESNGTGMPAIFGSLLKK-LEEFVTKDEELSKEEVSEDRIPSCLLSGSL 129
Query: 425 XXXLCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSE 246
LCYIQRV RS + HPQPRILCLQGSPDGP+Q+V VMN+IFSAQR M+PID+C +G +
Sbjct: 130 SMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQ 189
Query: 245 HSAFLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCH 66
+SAFLQQAS+ITGG++ P+ + GLFQ+L +FATDLHSR F+QLP+P GVDFRASCFCH
Sbjct: 190 NSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDFRASCFCH 249
Query: 65 KKAIDMGYVCSVCLSIFCE 9
KK IDMGY+CSVCLSIFCE
Sbjct: 250 KKTIDMGYICSVCLSIFCE 268
>ref|XP_006416613.1| hypothetical protein EUTSA_v10008316mg [Eutrema salsugineum]
gi|557094384|gb|ESQ34966.1| hypothetical protein
EUTSA_v10008316mg [Eutrema salsugineum]
Length = 300
Score = 277 bits (709), Expect = 4e-72
Identities = 142/258 (55%), Positives = 179/258 (69%), Gaps = 4/258 (1%)
Frame = -3
Query: 770 TNPFFWGRKIDKNSQEPDASPLTFAQFLEHAFAFFNSILLLHQLNHLVVIGTGMNTCEFI 591
TNPFFW + + F+QFL H AF N++L L+QLN +VVI TG ++C++I
Sbjct: 22 TNPFFWS-----------TTSIKFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYI 70
Query: 590 YDSTTKVK---ELKGFNEFMTPSTLISQNLEEFVKKDHELYKNNT-ETKNMYXXXXXXXX 423
YDS+ E G +L+ + LE+F KD EL K E +
Sbjct: 71 YDSSLTPNGNFESSGSGMPALFGSLL-EKLEDFAAKDEELSKEEEHEDRIASSLLSGSLS 129
Query: 422 XXLCYIQRVIRSTNPHPQPRILCLQGSPDGPQQHVGVMNAIFSAQRSMIPIDACIVGSEH 243
LCYIQRV RS + HPQPRILCLQGSPDGP+Q+V VMN+IFSAQR M+PID+C +G+++
Sbjct: 130 MALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGTQN 189
Query: 242 SAFLQQASHITGGIYLKPQFVQGLFQFLAMVFATDLHSRRFLQLPRPTGVDFRASCFCHK 63
SAFLQQAS+ITGG++ P+ + GLFQ+L +FATDLHSR F+QLP+P GVDFRASCFCHK
Sbjct: 190 SAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPVGVDFRASCFCHK 249
Query: 62 KAIDMGYVCSVCLSIFCE 9
K IDMGY+CSVCLSIFCE
Sbjct: 250 KTIDMGYICSVCLSIFCE 267