BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00008410
         (1313 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADE76199.1| unknown [Picea sitchensis]                             458   e-126
ref|XP_004307403.1| PREDICTED: RNA pseudourine synthase 5-like [...   421   e-115
ref|XP_006485880.1| PREDICTED: RNA pseudouridine synthase 5-like...   419   e-114
ref|XP_006485879.1| PREDICTED: RNA pseudouridine synthase 5-like...   414   e-113
ref|XP_006403820.1| hypothetical protein EUTSA_v10010446mg [Eutr...   412   e-112
gb|EOY18594.1| Pseudouridine synthase family protein [Theobroma ...   411   e-112
ref|XP_006291291.1| hypothetical protein CARUB_v10017427mg [Caps...   410   e-112
ref|XP_002312025.1| hypothetical protein POPTR_0008s04160g [Popu...   409   e-111
ref|XP_004143830.1| PREDICTED: RNA pseudourine synthase 5-like [...   408   e-111
gb|EXB80105.1| RNA pseudourine synthase 5 [Morus notabilis]           408   e-111
ref|XP_004233537.1| PREDICTED: RNA pseudourine synthase 5-like [...   407   e-111
ref|XP_004157313.1| PREDICTED: RNA pseudourine synthase 5-like [...   407   e-111
ref|XP_004496322.1| PREDICTED: RNA pseudourine synthase 5-like [...   406   e-110
ref|XP_002877851.1| pseudouridine synthase family protein [Arabi...   406   e-110
ref|NP_974416.1| RNA pseudourine synthase 5 [Arabidopsis thalian...   404   e-110
ref|XP_006346977.1| PREDICTED: RNA pseudouridine synthase 5-like...   404   e-110
ref|XP_003591952.1| RNA pseudourine synthase [Medicago truncatul...   404   e-110
gb|ESW15679.1| hypothetical protein PHAVU_007G093000g [Phaseolus...   403   e-109
ref|XP_003556222.1| PREDICTED: RNA pseudouridine synthase 5-like...   402   e-109
emb|CBI31488.3| unnamed protein product [Vitis vinifera]              402   e-109

>gb|ADE76199.1| unknown [Picea sitchensis]
          Length = 386

 Score =  458 bits (1178), Expect = e-126
 Identities = 227/375 (60%), Positives = 287/375 (76%), Gaps = 4/375 (1%)
 Frame = -1

Query: 1247 VEFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVD 1068
            +EFG+PWPE+N+GL Y D VK  S+S+  TL+DFYS+ Y+SSAPR+GWLQRI NGQI+VD
Sbjct: 1    MEFGIPWPEFNDGLSYTDTVK--STSTPPTLIDFYSSRYESSAPRKGWLQRIHNGQITVD 58

Query: 1067 GMVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQ 888
            G  V   DT+L  G  LVYHR+ W+EP AP K+ +L+ED+HLL +NKP+GLQVLPGGLFQ
Sbjct: 59   GKTVNEPDTVLRIGPKLVYHRLSWREPIAPCKLYVLFEDDHLLAVNKPSGLQVLPGGLFQ 118

Query: 887  QRTVLAQLQWKYTQSTNANMFTDK-IKHHSIACPAPVHRLGRGTSGILLCAKTKGAKSKL 711
            QRTVL QL+WK +QS+       K +     + P PVHRLGRGTSGILLCAK++ AKS+L
Sbjct: 119  QRTVLTQLKWKASQSSKYRSVAGKAVADFQESQPVPVHRLGRGTSGILLCAKSEIAKSQL 178

Query: 710  SLDFADGTLSMKNVRSTANDIRK---KRQISKIYRALVQGIVDHNTIVINQPIGKIQYPG 540
            + DFADGT  +   R++++DI     KR+I K YRAL  GI++ N I I QPIGK++YPG
Sbjct: 179  AADFADGTSFIS--RNSSSDIDAGEIKRRIYKTYRALADGIIEQNKIAIKQPIGKMRYPG 236

Query: 539  VACGLYVATPTGKQAESQVVVLYRDKKRNCTLVEVEIYSGRAHQIRIHMAYIGHPLVGDP 360
            V  GLYVA+PTGKQAES++ VL RDK RNCTLVEVEIYSGR HQIRIH+++IGHPL+GDP
Sbjct: 237  VRSGLYVASPTGKQAESRITVLSRDKNRNCTLVEVEIYSGRPHQIRIHLSFIGHPLLGDP 296

Query: 359  LYVSGGKPLIPPGSSVSESEHSTIVSFAEDGGYERSPYSMPGDCGYHLHAYQVILQHPIS 180
            LYV+GG+P I    S SES      +FAEDGGY++    +PGDCGY+LHAY++   HP+S
Sbjct: 297  LYVAGGRPSITVSDSYSESREGD--NFAEDGGYQKPLNPVPGDCGYYLHAYRLAFHHPVS 354

Query: 179  NKVMKIVASPPTTLS 135
            ++V++IVA PP  LS
Sbjct: 355  DEVVEIVAPPPPMLS 369


>ref|XP_004307403.1| PREDICTED: RNA pseudourine synthase 5-like [Fragaria vesca subsp.
            vesca]
          Length = 375

 Score =  421 bits (1081), Expect = e-115
 Identities = 214/381 (56%), Positives = 277/381 (72%), Gaps = 4/381 (1%)
 Frame = -1

Query: 1268 SPSVVAPVEFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIR 1089
            S S ++   FG+PWP+ N+GL Y D+VK  SS S +TL++FYS+ YKSSAP +GWLQRIR
Sbjct: 4    STSSLSTQTFGLPWPDLNDGLSYNDVVK--SSDSELTLIEFYSSKYKSSAPLQGWLQRIR 61

Query: 1088 NGQISVDGMVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQV 909
            NGQI+VDG VV+++DTIL  GS LVYHR+PW EP APY + +LYED+ ++ +NKP GLQV
Sbjct: 62   NGQITVDGEVVRDSDTILRVGSELVYHRLPWGEPDAPYLLEVLYEDDDMIALNKPGGLQV 121

Query: 908  LPGGLFQQRTVLAQLQWKYTQSTNANMFTDKIKHHSIACP----APVHRLGRGTSGILLC 741
            LPGGLFQQRTVL QL W+ +Q           K   +AC      PVHRLGRGTSGILLC
Sbjct: 122  LPGGLFQQRTVLTQLLWRESQ-----------KFDHLACQKSHLVPVHRLGRGTSGILLC 170

Query: 740  AKTKGAKSKLSLDFADGTLSMKNVRSTANDIRKKRQISKIYRALVQGIVDHNTIVINQPI 561
            AKTK AK++L+  FADGT  + +  +T   +   R+I+KIYRALV GI+  + +++ QPI
Sbjct: 171  AKTKHAKTQLAAYFADGTSHIGDDSTTNTKLHTTRKITKIYRALVTGIICEDEVIVKQPI 230

Query: 560  GKIQYPGVACGLYVATPTGKQAESQVVVLYRDKKRNCTLVEVEIYSGRAHQIRIHMAYIG 381
            G ++YPGVA GLY+A+P GK A S+V VL RD ++N T+V+VEI SGR HQIRIH+++IG
Sbjct: 231  GTVRYPGVAKGLYIASPAGKPALSKVEVLDRDIQKNHTIVQVEIQSGRPHQIRIHLSFIG 290

Query: 380  HPLVGDPLYVSGGKPLIPPGSSVSESEHSTIVSFAEDGGYERSPYSMPGDCGYHLHAYQV 201
            HPL+GDPLYV+GG+P       V E       SFA+DGG++R    +PGDCGY+LHA+QV
Sbjct: 291  HPLLGDPLYVAGGQPKCLGSDLVDE-------SFADDGGFKRPTKPVPGDCGYNLHAHQV 343

Query: 200  ILQHPISNKVMKIVASPPTTL 138
            +L HP SN+V+KI A  P  L
Sbjct: 344  VLSHPSSNEVIKITAPLPLVL 364


>ref|XP_006485880.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X2 [Citrus
            sinensis] gi|568865018|ref|XP_006485881.1| PREDICTED: RNA
            pseudouridine synthase 5-like isoform X3 [Citrus
            sinensis]
          Length = 389

 Score =  419 bits (1076), Expect = e-114
 Identities = 216/368 (58%), Positives = 275/368 (74%)
 Frame = -1

Query: 1241 FGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDGM 1062
            FG PWP+ NEGL Y D+V PS S   +TL++FYS  +K+SAP +GWLQRI+NGQI+VDG 
Sbjct: 13   FGEPWPQLNEGLLYNDVVSPSDSK--LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGR 70

Query: 1061 VVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQR 882
            VV + + ILS GS LVYHR+PWKEP  PY + + YED+ L+ +NKP+GLQVLPGGLFQQR
Sbjct: 71   VVNDPNIILSAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQR 130

Query: 881  TVLAQLQWKYTQSTNANMFTDKIKHHSIACPAPVHRLGRGTSGILLCAKTKGAKSKLSLD 702
            TVL QLQW+   S  ++  + +  H     P PVHRLGRGTSGILLCAKTK AK+ ++  
Sbjct: 131  TVLKQLQWR--ASKQSSSLSSQASH-----PVPVHRLGRGTSGILLCAKTKLAKTCIAAY 183

Query: 701  FADGTLSMKNVRSTANDIRKKRQISKIYRALVQGIVDHNTIVINQPIGKIQYPGVACGLY 522
            FAD T S+ +  +T  ++  +R+I+KIYRALV GIVD + ++I QPIG ++YPGVA GLY
Sbjct: 184  FADKT-SVVDADNTVMEL-SQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLY 241

Query: 521  VATPTGKQAESQVVVLYRDKKRNCTLVEVEIYSGRAHQIRIHMAYIGHPLVGDPLYVSGG 342
            VA+P+GK A S+V VL RD +RNCTLV+VEI SGR HQIRIH+A++GHPL+GDPLYV+GG
Sbjct: 242  VASPSGKPALSKVDVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGG 301

Query: 341  KPLIPPGSSVSESEHSTIVSFAEDGGYERSPYSMPGDCGYHLHAYQVILQHPISNKVMKI 162
            +    P S  SE    T   FA+DGGYER    +PGDCGY+LHAYQ+ L HP +N+V+KI
Sbjct: 302  Q----PKSFDSEFADGT---FAQDGGYERPVNPVPGDCGYYLHAYQLFLSHPTTNEVIKI 354

Query: 161  VASPPTTL 138
             A  P+ L
Sbjct: 355  TAPLPSVL 362


>ref|XP_006485879.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X1 [Citrus
            sinensis]
          Length = 390

 Score =  414 bits (1064), Expect = e-113
 Identities = 216/369 (58%), Positives = 275/369 (74%), Gaps = 1/369 (0%)
 Frame = -1

Query: 1241 FGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDGM 1062
            FG PWP+ NEGL Y D+V PS S   +TL++FYS  +K+SAP +GWLQRI+NGQI+VDG 
Sbjct: 13   FGEPWPQLNEGLLYNDVVSPSDSK--LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGR 70

Query: 1061 VVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQR 882
            VV + + ILS GS LVYHR+PWKEP  PY + + YED+ L+ +NKP+GLQVLPGGLFQQR
Sbjct: 71   VVNDPNIILSAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQR 130

Query: 881  TVLAQLQWKYTQSTNANMFTDKIKHHSIACPAPVHRLGRGTSGILLCAKTKGAKSKLSLD 702
            TVL QLQW+   S  ++  + +  H     P PVHRLGRGTSGILLCAKTK AK+ ++  
Sbjct: 131  TVLKQLQWR--ASKQSSSLSSQASH-----PVPVHRLGRGTSGILLCAKTKLAKTCIAAY 183

Query: 701  FADGTLSMKNVRSTANDIRKKRQISKIYRALVQGIVDHNTIVINQPIGKIQYPGVACGLY 522
            FAD T S+ +  +T  ++  +R+I+KIYRALV GIVD + ++I QPIG ++YPGVA GLY
Sbjct: 184  FADKT-SVVDADNTVMEL-SQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLY 241

Query: 521  VATPTGKQAESQVVVLYRDKKRNCTLV-EVEIYSGRAHQIRIHMAYIGHPLVGDPLYVSG 345
            VA+P+GK A S+V VL RD +RNCTLV +VEI SGR HQIRIH+A++GHPL+GDPLYV+G
Sbjct: 242  VASPSGKPALSKVDVLERDVQRNCTLVQQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAG 301

Query: 344  GKPLIPPGSSVSESEHSTIVSFAEDGGYERSPYSMPGDCGYHLHAYQVILQHPISNKVMK 165
            G+    P S  SE    T   FA+DGGYER    +PGDCGY+LHAYQ+ L HP +N+V+K
Sbjct: 302  GQ----PKSFDSEFADGT---FAQDGGYERPVNPVPGDCGYYLHAYQLFLSHPTTNEVIK 354

Query: 164  IVASPPTTL 138
            I A  P+ L
Sbjct: 355  ITAPLPSVL 363


>ref|XP_006403820.1| hypothetical protein EUTSA_v10010446mg [Eutrema salsugineum]
            gi|557104939|gb|ESQ45273.1| hypothetical protein
            EUTSA_v10010446mg [Eutrema salsugineum]
          Length = 382

 Score =  412 bits (1058), Expect = e-112
 Identities = 216/369 (58%), Positives = 269/369 (72%), Gaps = 2/369 (0%)
 Frame = -1

Query: 1238 GVPWPEYNEGLDYKDIVKP-SSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDGM 1062
            G+PWPE N+GL YKD+V   SSSS   T+ DFYS  YKSSAP  GW+QRI+NGQI +DG 
Sbjct: 12   GLPWPELNDGLAYKDVVSSFSSSSELTTVSDFYSTKYKSSAPLLGWIQRIQNGQIQIDGE 71

Query: 1061 VVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQR 882
            VVK+ +T+L  GS LVYHR+PWKEP  PY + +LYED  L+ +NKP+GLQVLPGGLFQQR
Sbjct: 72   VVKDHNTLLRRGSKLVYHRLPWKEPDTPYSLEVLYEDNDLIALNKPSGLQVLPGGLFQQR 131

Query: 881  TVLAQLQWKYTQSTNANMFTDKIKHHSIACPAPVHRLGRGTSGILLCAKTKGAKSKLSLD 702
            T+L QLQW +++  ++   T   + H    P PVHRLGRGTSGILLCAKTK AK+KL+  
Sbjct: 132  TLLTQLQWCFSKKDSS---TGARESH----PVPVHRLGRGTSGILLCAKTKLAKTKLASY 184

Query: 701  FADGTLSMKNVRSTANDIRKKRQISKIYRALVQGIVDHNTIVINQPIGKIQYPGVACGLY 522
            FA+GT S+    +   +    R+ISKIYRAL  GIV+ + +VI QPIG ++YPGVA GLY
Sbjct: 185  FAEGT-SLVGFGNLDQECGTGRKISKIYRALADGIVEEDEVVIKQPIGVVRYPGVAKGLY 243

Query: 521  VATPTGKQAESQVVVLYRDKKRNCTLVEVEIYSGRAHQIRIHMAYIGHPLVGDPLYVSGG 342
            VA+  GK A S+V VL R+ +RNCTLV+VEI SGR HQIRIH+AY+GHPLVGDPLYV+GG
Sbjct: 244  VASSEGKPALSKVAVLERNMQRNCTLVKVEIQSGRPHQIRIHLAYMGHPLVGDPLYVAGG 303

Query: 341  KPLIPPGSSVSESEHSTIVSFAEDGGYERSPYSMPGDCGYHLHAYQVILQHPIS-NKVMK 165
            KP      +V         +FAEDGGY R   ++PGDCGYHLHA+QV L + ++ NKV+K
Sbjct: 304  KPKCFDPDAVDS-------AFAEDGGYRRPNQAVPGDCGYHLHAHQVELPNLLNLNKVVK 356

Query: 164  IVASPPTTL 138
            +VA  P  L
Sbjct: 357  VVAPLPPIL 365


>gb|EOY18594.1| Pseudouridine synthase family protein [Theobroma cacao]
          Length = 378

 Score =  411 bits (1056), Expect = e-112
 Identities = 210/384 (54%), Positives = 279/384 (72%), Gaps = 5/384 (1%)
 Frame = -1

Query: 1274 MPSPSVVAPVEFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQR 1095
            M + S    + FG+PWPE N+GL Y D++KPS S   +TL++FYS+ YK+SAP +GWLQR
Sbjct: 1    MSNDSQTQSLVFGLPWPELNDGLFYDDVIKPSDSE--LTLIEFYSSKYKNSAPSQGWLQR 58

Query: 1094 IRNGQISVDGMVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGL 915
            I+NGQISVDG VV++ +TIL   S LVYHR+PWKEP AP+ + +LYED+ ++ +NKP+GL
Sbjct: 59   IQNGQISVDGRVVRDPNTILRGSSELVYHRLPWKEPDAPHALEVLYEDDDMIALNKPSGL 118

Query: 914  QVLPGGLFQQRTVLAQLQWKYTQSTNANMFTDKIKHHSIACPAPVHRLGRGTSGILLCAK 735
            QVLPGGLFQQRTVL QL W+  + T++     +  H     P PVHRLGRGTSGILLCAK
Sbjct: 119  QVLPGGLFQQRTVLTQLSWRMRKQTSS--LASQESH-----PVPVHRLGRGTSGILLCAK 171

Query: 734  TKGAKSKLSLDFADGTLSMKNVRSTANDIRK-----KRQISKIYRALVQGIVDHNTIVIN 570
            TK AK+ L+  FADGT  +      AN  RK      R+ISKIYRALV GI+  + +VIN
Sbjct: 172  TKAAKTCLAAYFADGTSLI-----GANSNRKMQPSCTRKISKIYRALVTGILGEDKVVIN 226

Query: 569  QPIGKIQYPGVACGLYVATPTGKQAESQVVVLYRDKKRNCTLVEVEIYSGRAHQIRIHMA 390
            QPIG +QYPGVA GLYVA+P+GK A S+V VL +D+++N TLV+V+I SGR HQIRIH++
Sbjct: 227  QPIGIVQYPGVAKGLYVASPSGKPALSKVEVLEKDEQQNHTLVQVQIESGRPHQIRIHLS 286

Query: 389  YIGHPLVGDPLYVSGGKPLIPPGSSVSESEHSTIVSFAEDGGYERSPYSMPGDCGYHLHA 210
            +IGHPL+GDPLY++GG+P       V E       ++A+DGGY+R    +PGDCGY+LHA
Sbjct: 287  FIGHPLLGDPLYIAGGQPRCFDSEFVDE-------NYAQDGGYQRPVNPVPGDCGYYLHA 339

Query: 209  YQVILQHPISNKVMKIVASPPTTL 138
            ++++L HP +++++ I A  P  L
Sbjct: 340  HRLLLSHPTTDEIINITAPLPPVL 363


>ref|XP_006291291.1| hypothetical protein CARUB_v10017427mg [Capsella rubella]
            gi|482559998|gb|EOA24189.1| hypothetical protein
            CARUB_v10017427mg [Capsella rubella]
          Length = 382

 Score =  410 bits (1053), Expect = e-112
 Identities = 213/368 (57%), Positives = 270/368 (73%), Gaps = 1/368 (0%)
 Frame = -1

Query: 1238 GVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDGMV 1059
            G+PWPE+N+GL+YKD+V  SS S   T+ DFY   YKSSAP  GW+QRI+NGQI +DG V
Sbjct: 12   GLPWPEHNDGLEYKDVVS-SSESELTTVSDFYFTKYKSSAPLLGWIQRIQNGQIQIDGEV 70

Query: 1058 VKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQRT 879
            VK+  T+L  GS LVYHR+PWKEP  PY + ILYED+ L+ +NKP+GLQVLPGGLFQQRT
Sbjct: 71   VKDPKTVLRSGSKLVYHRLPWKEPDTPYSLEILYEDDDLIALNKPSGLQVLPGGLFQQRT 130

Query: 878  VLAQLQWKYTQSTNANMFTDKIKHHSIACPAPVHRLGRGTSGILLCAKTKGAKSKLSLDF 699
            +L QLQW + +    +  T   + H    P PVHRLGRGTSGILLCAKTK AK+KL+  F
Sbjct: 131  LLTQLQWWFGKK---DFSTGSPESH----PVPVHRLGRGTSGILLCAKTKLAKTKLAAYF 183

Query: 698  ADGTLSMKNVRSTANDIRKKRQISKIYRALVQGIVDHNTIVINQPIGKIQYPGVACGLYV 519
            A+GT S+    +   D    R++SKIYRAL  GIV+ + +VI QPIG ++YPGVA GLYV
Sbjct: 184  AEGT-SLVGSGNLDQDCGTGRKLSKIYRALADGIVEEDEVVIQQPIGVVRYPGVAKGLYV 242

Query: 518  ATPTGKQAESQVVVLYRDKKRNCTLVEVEIYSGRAHQIRIHMAYIGHPLVGDPLYVSGGK 339
            A+P GK A S+VVVL RD++++CTLV+VEI SGR HQIRIH+AYIGHPL+GDPLYV+GG+
Sbjct: 243  ASPEGKPAFSKVVVLERDREKSCTLVKVEIQSGRPHQIRIHLAYIGHPLIGDPLYVAGGQ 302

Query: 338  PLIPPGSSVSESEHSTIVSFAEDGGYERSPYSMPGDCGYHLHAYQVILQHPI-SNKVMKI 162
            P       V++       +FAEDGGY R    +PGDCGY+LHA+QV L + + +++V+KI
Sbjct: 303  PKCFDTDLVADD-----AAFAEDGGYRRPNQPVPGDCGYYLHAHQVDLLNLLNTHQVVKI 357

Query: 161  VASPPTTL 138
            VA  P  L
Sbjct: 358  VAPLPPIL 365


>ref|XP_002312025.1| hypothetical protein POPTR_0008s04160g [Populus trichocarpa]
            gi|222851845|gb|EEE89392.1| hypothetical protein
            POPTR_0008s04160g [Populus trichocarpa]
          Length = 377

 Score =  409 bits (1051), Expect = e-111
 Identities = 211/369 (57%), Positives = 269/369 (72%), Gaps = 1/369 (0%)
 Frame = -1

Query: 1241 FGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDGM 1062
            FG PWP+ NEGL Y D+V  SS S  +TL+ FYS+ YK+SAP +GWLQRI NGQI++DG 
Sbjct: 14   FGSPWPDLNEGLFYNDVVSTSSDSG-LTLIHFYSSKYKNSAPLQGWLQRIHNGQITIDGE 72

Query: 1061 VVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQR 882
            VVK    IL  G  LVYHR+PW+EP APY + +LYED+ ++ +NKP GLQVLPGGLFQQR
Sbjct: 73   VVKEPKAILRDGMELVYHRLPWREPDAPYLLQVLYEDDDMVALNKPPGLQVLPGGLFQQR 132

Query: 881  TVLAQLQWKYTQSTNANMFTDKIKHHSIACPAPVHRLGRGTSGILLCAKTKGAKSKLSLD 702
            TVL QLQW+ ++ +++            + P PVHRLGRGTSGILLCAKTK AK+ L+  
Sbjct: 133  TVLMQLQWRASKGSSSLAIQG-------SHPVPVHRLGRGTSGILLCAKTKVAKTSLAAY 185

Query: 701  FADGTLSMKNVRSTANDIRKKRQISKIYRALVQGIVDHNTIVINQPIGKIQYPGVACGLY 522
            FADGT  + +  +   +  K+R+ISKIYRALV GI++ + I+I QPIG ++YPGVA GLY
Sbjct: 186  FADGTSLIGDSSNANMEQSKRRKISKIYRALVNGILNQDKIIIKQPIGTMRYPGVAKGLY 245

Query: 521  VATPTGKQAESQVVVLYRDKKRNCTLVEVEIYSGRAHQIRIHMAYIGHPLVGDPLYVSGG 342
            VA+P+GK A S+V VL RD + N TLV+VEI SGR HQIRIH+++IGHPL+GDPLY  GG
Sbjct: 246  VASPSGKPALSKVEVLERDSQLNQTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYDVGG 305

Query: 341  KPLIPPGSSVSESEHSTIVSFAEDGGYERSPYSMPGDCGYHLHAYQVILQHPISN-KVMK 165
            +P+        +SEH    SFAEDGGYER    +PGDCGY+LHA+Q++L HP  N +V+K
Sbjct: 306  QPM------CFDSEHED-ESFAEDGGYERPAKPVPGDCGYYLHAHQLVLSHPTKNEQVIK 358

Query: 164  IVASPPTTL 138
            I A  P+ L
Sbjct: 359  ITAPLPSIL 367


>ref|XP_004143830.1| PREDICTED: RNA pseudourine synthase 5-like [Cucumis sativus]
          Length = 371

 Score =  408 bits (1049), Expect = e-111
 Identities = 211/369 (57%), Positives = 271/369 (73%), Gaps = 2/369 (0%)
 Frame = -1

Query: 1238 GVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDGMV 1059
            G+PWP+ N+GL Y D+VKP  S    +L+ FYS  YKSSAP EGWLQRI+N QI++DG V
Sbjct: 11   GIPWPDLNDGLFYNDVVKPPDSGK--SLIHFYSWKYKSSAPLEGWLQRIKNEQITIDGEV 68

Query: 1058 VKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQRT 879
            + + +TIL  GS LVY R+PWKEP  PY + ILYED  ++ +NKP+GLQVLPGG+FQQRT
Sbjct: 69   ITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLPGGVFQQRT 128

Query: 878  VLAQLQWKYTQSTNANMFTDKIKHHSIACPAPVHRLGRGTSGILLCAKTKGAKSKLSLDF 699
            VL QLQW  ++ +    F+   + H    P PVHRLGRGTSGILLCAKTK A+++ +  F
Sbjct: 129  VLTQLQWWSSKQS----FSVSEELH----PVPVHRLGRGTSGILLCAKTKLARTQFAAYF 180

Query: 698  ADGTLSMKNVRSTANDIRKKRQISKIYRALVQGIVDHNTIVINQPIGKIQYPGVACGLYV 519
            A+GT S++  R++  +   KR+ISKIYRALV GI+  + + ++QPIG++QYPGVA GLYV
Sbjct: 181  AEGTSSVRRNRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYV 240

Query: 518  ATPTGKQAESQVVVLYRDKKRNCTLVEVEIYSGRAHQIRIHMAYIGHPLVGDPLYVSGGK 339
            ATP+GK A S+V VL RD++   TLV+VEI SGR HQIRIH++ IGHPLVGDPLYV+GG+
Sbjct: 241  ATPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLVGDPLYVAGGQ 300

Query: 338  PLIPPGSSVSESEHSTIV--SFAEDGGYERSPYSMPGDCGYHLHAYQVILQHPISNKVMK 165
            P            HS +V  SFAEDGGYER    +PGDCGY+LHA+Q+IL HP +N+V+K
Sbjct: 301  P---------NCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEVVK 351

Query: 164  IVASPPTTL 138
            I+A  P  L
Sbjct: 352  IIAPLPPIL 360


>gb|EXB80105.1| RNA pseudourine synthase 5 [Morus notabilis]
          Length = 377

 Score =  408 bits (1048), Expect = e-111
 Identities = 211/374 (56%), Positives = 266/374 (71%), Gaps = 4/374 (1%)
 Frame = -1

Query: 1247 VEFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVD 1068
            + FG  WPE N+GL Y D+V+ S S S  TL+ FYS  YK+SAP +GWLQRIRNGQI+V+
Sbjct: 12   LRFGFSWPELNDGLFYSDVVRTSDSES--TLIQFYSRKYKNSAPLQGWLQRIRNGQITVN 69

Query: 1067 GMVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQ 888
            G VV++ DTILS GS LVYHR+PWKEP APY + ILYED  ++ ++KP+ LQVLPGGLFQ
Sbjct: 70   GRVVRDPDTILSIGSELVYHRLPWKEPGAPYILEILYEDGDMIALDKPSELQVLPGGLFQ 129

Query: 887  QRTVLAQLQWKYTQSTNANMFTDKIKHHSIAC----PAPVHRLGRGTSGILLCAKTKGAK 720
            QRTVL QLQW+ T+ ++           S+ C    P PVHRLGRGTSGILLCAKTK AK
Sbjct: 130  QRTVLTQLQWRATKQSS-----------SLVCCEPNPVPVHRLGRGTSGILLCAKTKFAK 178

Query: 719  SKLSLDFADGTLSMKNVRSTANDIRKKRQISKIYRALVQGIVDHNTIVINQPIGKIQYPG 540
            ++L+  FADGT  +        ++  +R+I KIYRALV GIV  + +++ QPIG +QYPG
Sbjct: 179  TQLAAYFADGTSYVGGNSKNNLELNARRKILKIYRALVTGIVCEDKVIVEQPIGTVQYPG 238

Query: 539  VACGLYVATPTGKQAESQVVVLYRDKKRNCTLVEVEIYSGRAHQIRIHMAYIGHPLVGDP 360
            VA GLYVA+P+GK A S+V VL RD ++NCTLV+VEI SGR HQIRIH+++IGHPL+GDP
Sbjct: 239  VAKGLYVASPSGKPALSKVEVLERDVEKNCTLVKVEIQSGRPHQIRIHLSFIGHPLLGDP 298

Query: 359  LYVSGGKPLIPPGSSVSESEHSTIVSFAEDGGYERSPYSMPGDCGYHLHAYQVILQHPIS 180
            LYV GG+P       V         SFA+DGG+ R    +PGDCGY LHA+ V L HP +
Sbjct: 299  LYVVGGRPRCFDPEFVDG-------SFAQDGGFPRPAKPVPGDCGYTLHAHHVSLSHPTT 351

Query: 179  NKVMKIVASPPTTL 138
            N+V++I A  P  L
Sbjct: 352  NEVIEITAPLPPVL 365


>ref|XP_004233537.1| PREDICTED: RNA pseudourine synthase 5-like [Solanum lycopersicum]
          Length = 402

 Score =  407 bits (1047), Expect = e-111
 Identities = 211/384 (54%), Positives = 271/384 (70%)
 Frame = -1

Query: 1289 EKRESMPSPSVVAPVEFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPRE 1110
            E R S  +        FGVPWP+ NEGL Y DIV+P+ +   +TL++FY   YK+SAP +
Sbjct: 21   ELRMSEKAELAAVRAYFGVPWPQRNEGLSYHDIVRPTDAG--LTLIEFYFRKYKNSAPLQ 78

Query: 1109 GWLQRIRNGQISVDGMVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVIN 930
            GWLQRI+N QI++DG VV   DT L  G+ LVYHR+PW+EP APY + +L+ED++L+V+N
Sbjct: 79   GWLQRIQNKQITIDGKVVILPDTELRAGAELVYHRLPWREPDAPYLLEVLFEDDYLIVVN 138

Query: 929  KPAGLQVLPGGLFQQRTVLAQLQWKYTQSTNANMFTDKIKHHSIACPAPVHRLGRGTSGI 750
            KP+GLQVLPGGL+QQRTVL QLQW   + T  +    K        P PVHRLGRGTSGI
Sbjct: 139  KPSGLQVLPGGLYQQRTVLTQLQWHACKLTTTSSGCQKTH------PVPVHRLGRGTSGI 192

Query: 749  LLCAKTKGAKSKLSLDFADGTLSMKNVRSTANDIRKKRQISKIYRALVQGIVDHNTIVIN 570
            LLCAKTK  KS+L+  FA+GT S+   + T ++    R+I KIYRALV G++D +  VI 
Sbjct: 193  LLCAKTKLCKSRLAAYFAEGT-SVVEEKCTNSECNTMRKICKIYRALVSGVMDMDEAVIK 251

Query: 569  QPIGKIQYPGVACGLYVATPTGKQAESQVVVLYRDKKRNCTLVEVEIYSGRAHQIRIHMA 390
            QPIG I+YPGVA GLYVA+P+GK A S V VL RD + NCTLV+VEI SGR HQIRIH++
Sbjct: 252  QPIGTIKYPGVAKGLYVASPSGKPALSSVRVLERDSESNCTLVQVEIQSGRPHQIRIHLS 311

Query: 389  YIGHPLVGDPLYVSGGKPLIPPGSSVSESEHSTIVSFAEDGGYERSPYSMPGDCGYHLHA 210
            +IG+PL+GDPLYVSGG+P       + E       SF +DGGY+R    +PGDCGY+LHA
Sbjct: 312  FIGYPLIGDPLYVSGGQPKCFHPELLDE-------SFEKDGGYQRPENPVPGDCGYNLHA 364

Query: 209  YQVILQHPISNKVMKIVASPPTTL 138
            +Q+ L HPI+N+++KI A  P  L
Sbjct: 365  HQIGLIHPITNELIKITAPLPAIL 388


>ref|XP_004157313.1| PREDICTED: RNA pseudourine synthase 5-like [Cucumis sativus]
          Length = 371

 Score =  407 bits (1046), Expect = e-111
 Identities = 210/369 (56%), Positives = 271/369 (73%), Gaps = 2/369 (0%)
 Frame = -1

Query: 1238 GVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDGMV 1059
            G+PWP+ N+GL Y D+VKP  S    +L+ FYS  YKSSAP EGWLQRI+N QI++DG V
Sbjct: 11   GIPWPDLNDGLFYNDVVKPPDSGK--SLIHFYSWKYKSSAPLEGWLQRIKNEQITIDGEV 68

Query: 1058 VKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQRT 879
            + + +TIL  GS LVY R+PWKEP  PY + ILYED  ++ +NKP+GLQVLPGG+FQQRT
Sbjct: 69   ITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLPGGVFQQRT 128

Query: 878  VLAQLQWKYTQSTNANMFTDKIKHHSIACPAPVHRLGRGTSGILLCAKTKGAKSKLSLDF 699
            VL QLQW  ++ +    F+   + H    P PVHRLGRGTSGILLCAKTK A+++ +  F
Sbjct: 129  VLTQLQWWSSKQS----FSVSEELH----PVPVHRLGRGTSGILLCAKTKLARTQFAAYF 180

Query: 698  ADGTLSMKNVRSTANDIRKKRQISKIYRALVQGIVDHNTIVINQPIGKIQYPGVACGLYV 519
            A+GT S++  R++  +   KR+ISKIYRALV GI+  + + ++QPIG++QYPGVA GLYV
Sbjct: 181  AEGTSSVRRNRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYV 240

Query: 518  ATPTGKQAESQVVVLYRDKKRNCTLVEVEIYSGRAHQIRIHMAYIGHPLVGDPLYVSGGK 339
            ATP+GK A S+V VL RD++   TLV+VEI SGR HQIRIH++ IGHPL+GDPLYV+GG+
Sbjct: 241  ATPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQ 300

Query: 338  PLIPPGSSVSESEHSTIV--SFAEDGGYERSPYSMPGDCGYHLHAYQVILQHPISNKVMK 165
            P            HS +V  SFAEDGGYER    +PGDCGY+LHA+Q+IL HP +N+V+K
Sbjct: 301  P---------NCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEVVK 351

Query: 164  IVASPPTTL 138
            I+A  P  L
Sbjct: 352  IIAPLPPIL 360


>ref|XP_004496322.1| PREDICTED: RNA pseudourine synthase 5-like [Cicer arietinum]
          Length = 368

 Score =  406 bits (1043), Expect = e-110
 Identities = 205/369 (55%), Positives = 269/369 (72%)
 Frame = -1

Query: 1244 EFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDG 1065
            + GVPWPE N+GL Y D+V+PS +   +TL++FYS  YKSSAP +GWLQRI++ QI+VD 
Sbjct: 6    KIGVPWPELNDGLSYNDVVRPSDAG--LTLIEFYSTKYKSSAPLQGWLQRIKSDQITVDA 63

Query: 1064 MVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQ 885
             VV + +T+L  GS LVYHR+PWKEP AP+ I +LYED+ ++ +NKP+GLQVLPGGLFQQ
Sbjct: 64   KVVTDPNTLLRAGSKLVYHRLPWKEPDAPHTIQVLYEDDDIIALNKPSGLQVLPGGLFQQ 123

Query: 884  RTVLAQLQWKYTQSTNANMFTDKIKHHSIACPAPVHRLGRGTSGILLCAKTKGAKSKLSL 705
            RTVL QLQW   ++ N   F    K H    P PVHRLGRGTSGILLCAKTK A+  L+ 
Sbjct: 124  RTVLTQLQW---ETNNKCTFEAHQKPH----PVPVHRLGRGTSGILLCAKTKLARVHLAS 176

Query: 704  DFADGTLSMKNVRSTANDIRKKRQISKIYRALVQGIVDHNTIVINQPIGKIQYPGVACGL 525
             FADGT  +   R T  ++ K   I+KIYRALV GI+D++ + I+QPIG ++YPGVA GL
Sbjct: 177  YFADGTSRIGGKRDTNQELGK---IAKIYRALVSGIIDNDKVTIDQPIGMVKYPGVAKGL 233

Query: 524  YVATPTGKQAESQVVVLYRDKKRNCTLVEVEIYSGRAHQIRIHMAYIGHPLVGDPLYVSG 345
            YVA+ +GK A S V +L R+ K N TLV+V+I SGR HQIRIH+++IGHPL+GDPLY  G
Sbjct: 234  YVASQSGKPALSVVDILERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLIGDPLYAVG 293

Query: 344  GKPLIPPGSSVSESEHSTIVSFAEDGGYERSPYSMPGDCGYHLHAYQVILQHPISNKVMK 165
            G+P       + +       SFAEDGGY R P  +PGDCGY+LHA++++L HPI+N++++
Sbjct: 294  GQPKCLDYDFLDD-------SFAEDGGYPRPPKPVPGDCGYYLHAHELLLTHPITNEIIE 346

Query: 164  IVASPPTTL 138
            I+A  P+ L
Sbjct: 347  IIAPLPSIL 355


>ref|XP_002877851.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297323689|gb|EFH54110.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 387

 Score =  406 bits (1043), Expect = e-110
 Identities = 217/387 (56%), Positives = 272/387 (70%), Gaps = 7/387 (1%)
 Frame = -1

Query: 1277 SMPSPSVVAPVEFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQ 1098
            S PSP    P   G+PWPE N GL YKD++  SS S   T+ DFY   YKSSAP  GW+Q
Sbjct: 2    STPSPP---PQRIGLPWPELNVGLAYKDVIS-SSDSELTTVSDFYFTKYKSSAPLLGWIQ 57

Query: 1097 RIRNGQISVDGMVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAG 918
            RI+NGQI +DG VVK+ +T+L  GS LVYHR+PWKEP  PY + +LYED+ L+ +NKP+G
Sbjct: 58   RIQNGQIQIDGEVVKDPNTLLRSGSKLVYHRLPWKEPDTPYSLQVLYEDDDLIALNKPSG 117

Query: 917  LQVLPGGLFQQRTVLAQLQWKYTQSTNANMFTDKIKHHSIACPAPVHRLGRGTSGILLCA 738
            LQVLPGGLFQQRTVL QLQW + +  N +    +   H    P PVHRLGRGTSGILLCA
Sbjct: 118  LQVLPGGLFQQRTVLTQLQWCFRK--NDSYTGSRESPH----PVPVHRLGRGTSGILLCA 171

Query: 737  KTKGAKSKLSLDFADGTLSMKNVRSTANDIRKKRQISKIYRALVQGIVDHNTIVINQPIG 558
            KTK AK+KL+  FA+GT S+    +   +  K R++SKIYRAL  GIV+ + +VI QP+G
Sbjct: 172  KTKLAKTKLAAYFAEGT-SLVGSGNLEQECGKGRKLSKIYRALADGIVEEDEVVIKQPLG 230

Query: 557  KIQYPGVACGLYVATPTGKQAESQVVVLYRDKKRNCTLVEVEIYSGRAHQIRIHMAYIGH 378
             ++YPGVA GLYVA+P GK A S+V VL RDK++NCTLV+VEI SGR HQIRIH+AY+GH
Sbjct: 231  VVRYPGVAKGLYVASPEGKPAFSKVAVLERDKQKNCTLVKVEIQSGRPHQIRIHLAYMGH 290

Query: 377  PLVG------DPLYVSGGKPLIPPGSSVSESEHSTIVSFAEDGGYERSPYSMPGDCGYHL 216
            PL+       DPLYV+GG+P       V +       +FAEDGGY R   ++PGDCGYHL
Sbjct: 291  PLLASYNCMRDPLYVAGGQPKCFDPDLVDDD-----AAFAEDGGYRRPNQAVPGDCGYHL 345

Query: 215  HAYQVILQHPI-SNKVMKIVASPPTTL 138
            HA+QV L + + ++KV+KIVA  P  L
Sbjct: 346  HAHQVELPNLLNTHKVVKIVAPLPPIL 372


>ref|NP_974416.1| RNA pseudourine synthase 5 [Arabidopsis thaliana]
            gi|229891781|sp|Q5M721.2|PUS5_ARATH RecName: Full=RNA
            pseudouridine synthase 5; AltName: Full=RNA
            pseudouridylate synthase 5; AltName: Full=RNA-uridine
            isomerase 5 gi|332645400|gb|AEE78921.1| RNA pseudourine
            synthase 5 [Arabidopsis thaliana]
          Length = 369

 Score =  404 bits (1039), Expect = e-110
 Identities = 211/372 (56%), Positives = 267/372 (71%), Gaps = 1/372 (0%)
 Frame = -1

Query: 1250 PVEFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISV 1071
            P   G+PWPE N+GL YKD +  SS S   T+ +FY   YKSSAP  GW+QRI+NGQI +
Sbjct: 5    PQRIGLPWPELNDGLAYKDAIS-SSESELTTVSEFYFTKYKSSAPLLGWIQRIQNGQIQI 63

Query: 1070 DGMVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLF 891
            DG VVK+ +T+L  GS LVY R+PWKEP  PY + +LYED+ L+ +NKP+GLQVLPGGLF
Sbjct: 64   DGEVVKDPNTLLRSGSKLVYSRLPWKEPDTPYSLEVLYEDDDLIALNKPSGLQVLPGGLF 123

Query: 890  QQRTVLAQLQWKYTQSTNANMFTDKIKHHSIACPAPVHRLGRGTSGILLCAKTKGAKSKL 711
            QQRTVL QLQW +    N +    +   H    P PVHRLGRGTSGILLCAKTK AK+KL
Sbjct: 124  QQRTVLTQLQWCF--GKNDSYIGSRESPH----PVPVHRLGRGTSGILLCAKTKLAKTKL 177

Query: 710  SLDFADGTLSMKNVRSTANDIRKKRQISKIYRALVQGIVDHNTIVINQPIGKIQYPGVAC 531
            +  FA+GT S+    +   +    R++SKIYRAL  GIV+ + +VI QPIG ++YPGVA 
Sbjct: 178  AAYFAEGT-SLVGSGNLDQECGTGRKLSKIYRALADGIVEEDEVVIKQPIGVVRYPGVAQ 236

Query: 530  GLYVATPTGKQAESQVVVLYRDKKRNCTLVEVEIYSGRAHQIRIHMAYIGHPLVGDPLYV 351
            GLYVA+P GK A S+V VL RD+++NC+LV+VEI SGR HQIRIH+AY+GHPLVGDPLYV
Sbjct: 237  GLYVASPEGKPAFSKVFVLERDREKNCSLVKVEIQSGRPHQIRIHLAYMGHPLVGDPLYV 296

Query: 350  SGGKPLIPPGSSVSESEHSTIVSFAEDGGYERSPYSMPGDCGYHLHAYQVILQHPI-SNK 174
            +GG+P       V ++      +FAEDGGY R   ++PGDCGYHLHA+QV L + + ++K
Sbjct: 297  AGGQPKCFDPDLVDDA-----AAFAEDGGYRRPNQAVPGDCGYHLHAHQVELPNLLNTHK 351

Query: 173  VMKIVASPPTTL 138
            V+KIVA  P  L
Sbjct: 352  VVKIVAPLPPIL 363


>ref|XP_006346977.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X3 [Solanum
            tuberosum]
          Length = 374

 Score =  404 bits (1038), Expect = e-110
 Identities = 207/373 (55%), Positives = 267/373 (71%)
 Frame = -1

Query: 1256 VAPVEFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQI 1077
            V    FGV WPE NEGL Y DIV+P+ +   + L++FY   YK+SAP +GWLQRI+N QI
Sbjct: 9    VVTAYFGVSWPELNEGLTYHDIVRPTDAG--LMLIEFYFRKYKNSAPLQGWLQRIQNKQI 66

Query: 1076 SVDGMVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGG 897
            ++DG VV   DT L  G+ LVYHR+PW+EP APY + +L++D++L+V+NKP+GLQVLPGG
Sbjct: 67   TIDGKVVILPDTELRAGAELVYHRLPWREPDAPYLLEVLFQDDYLIVVNKPSGLQVLPGG 126

Query: 896  LFQQRTVLAQLQWKYTQSTNANMFTDKIKHHSIACPAPVHRLGRGTSGILLCAKTKGAKS 717
            L+QQRTVL QLQW   + T  +    K        P PVHRLGRGTSGILLCAKTK  KS
Sbjct: 127  LYQQRTVLTQLQWHACKPTTTSSGCQKTH------PVPVHRLGRGTSGILLCAKTKLCKS 180

Query: 716  KLSLDFADGTLSMKNVRSTANDIRKKRQISKIYRALVQGIVDHNTIVINQPIGKIQYPGV 537
            +L+  FA+GT S+   + T ++    R+I KIYRALV G++D + +VI QPIG I+YPGV
Sbjct: 181  RLAAYFAEGT-SVVEDKCTNSECNTMRKICKIYRALVSGVMDMDEVVIKQPIGTIKYPGV 239

Query: 536  ACGLYVATPTGKQAESQVVVLYRDKKRNCTLVEVEIYSGRAHQIRIHMAYIGHPLVGDPL 357
            A GLYVA+P+GK A S V VL RD + NCTLV+VEI SGR HQIRIH+++IG+PL+GDPL
Sbjct: 240  AKGLYVASPSGKPALSSVRVLERDSENNCTLVQVEIQSGRPHQIRIHLSFIGYPLIGDPL 299

Query: 356  YVSGGKPLIPPGSSVSESEHSTIVSFAEDGGYERSPYSMPGDCGYHLHAYQVILQHPISN 177
            YVSGG+P       + E       SF +DGGY+R    +PGDCGY+LHA+Q+ L HPI+N
Sbjct: 300  YVSGGQPKCFHPELMDE-------SFEKDGGYQRPENPVPGDCGYNLHAHQIGLIHPITN 352

Query: 176  KVMKIVASPPTTL 138
            +++KI A  P  L
Sbjct: 353  ELIKITAPLPAIL 365


>ref|XP_003591952.1| RNA pseudourine synthase [Medicago truncatula]
            gi|358349060|ref|XP_003638558.1| RNA pseudourine synthase
            [Medicago truncatula] gi|355481000|gb|AES62203.1| RNA
            pseudourine synthase [Medicago truncatula]
            gi|355504493|gb|AES85696.1| RNA pseudourine synthase
            [Medicago truncatula]
          Length = 371

 Score =  404 bits (1037), Expect = e-110
 Identities = 203/375 (54%), Positives = 272/375 (72%), Gaps = 1/375 (0%)
 Frame = -1

Query: 1259 VVAPVEFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQ 1080
            + +P + G+PWPE+N+GL Y D+V+PS +   +TL++FYS  YKSSAP +GWLQRI++ Q
Sbjct: 1    MASPKKIGIPWPEFNDGLSYDDVVRPSDAG--LTLIEFYSTKYKSSAPLQGWLQRIKSDQ 58

Query: 1079 ISVDGMVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPG 900
            I++D  VV + +TIL  GS LVYHR+PWKEP AP+ I +LYED+ ++ +NKP+GLQVLPG
Sbjct: 59   ITLDARVVTDPNTILRVGSKLVYHRIPWKEPDAPHTIEVLYEDDDIIALNKPSGLQVLPG 118

Query: 899  GLFQQRTVLAQLQWKYTQSTNANMFTDKIKHHSIACPAPVHRLGRGTSGILLCAKTKGAK 720
            GLFQQRTVL QLQW+    +        I+ H    P PVHRLGRGTSGILLCAKTK A+
Sbjct: 119  GLFQQRTVLTQLQWETNNKST-------IEAHQKPHPVPVHRLGRGTSGILLCAKTKLAR 171

Query: 719  SKLSLDFADGTLSMKNVRSTANDIRKKRQISKIYRALVQGIVDHNTIVINQPIGKIQYPG 540
            ++L+  FADGT  ++    T  ++ K   I+KIYRALV GI++++ + INQPIG ++YPG
Sbjct: 172  ARLASYFADGTSRIEGKGHTNQELGK---IAKIYRALVSGIINNDQVTINQPIGMVKYPG 228

Query: 539  VACGLYVATPTGKQAESQVVVLYRDKKRNCTLVE-VEIYSGRAHQIRIHMAYIGHPLVGD 363
            VA GLYVA+ +GK A S V VL R+ K N TLV+ V+I SGR HQIRIH+++IGHPL+GD
Sbjct: 229  VAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVVKIQSGRPHQIRIHLSFIGHPLLGD 288

Query: 362  PLYVSGGKPLIPPGSSVSESEHSTIVSFAEDGGYERSPYSMPGDCGYHLHAYQVILQHPI 183
            PLY  GG+P       + E       SFAEDGGY R    +PGDCGYHLHA+++ L HPI
Sbjct: 289  PLYAVGGQPKCLDCDFLDE-------SFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPI 341

Query: 182  SNKVMKIVASPPTTL 138
            +N++++++A  P+ L
Sbjct: 342  TNEIIEMIAPLPSIL 356


>gb|ESW15679.1| hypothetical protein PHAVU_007G093000g [Phaseolus vulgaris]
          Length = 365

 Score =  403 bits (1035), Expect = e-109
 Identities = 204/369 (55%), Positives = 269/369 (72%)
 Frame = -1

Query: 1244 EFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDG 1065
            +FG+PWPE N+GL Y D+V+  SS S +TL++FY   YKSSAP +GWLQRI++GQI+ DG
Sbjct: 6    KFGIPWPECNDGLSYDDVVR--SSDSGLTLIEFYFTKYKSSAPLQGWLQRIKSGQITFDG 63

Query: 1064 MVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQ 885
             VV ++ T+L  GS LVYHR+PWKEP AP+ I +LYED+ ++ +NKP+GLQVLPGGLFQQ
Sbjct: 64   RVVTDSSTVLRVGSKLVYHRLPWKEPDAPHMIEVLYEDDEMIALNKPSGLQVLPGGLFQQ 123

Query: 884  RTVLAQLQWKYTQSTNANMFTDKIKHHSIACPAPVHRLGRGTSGILLCAKTKGAKSKLSL 705
            RTVL QLQW+      AN+       H    P PVHRLGRGTSGILLCAKTK A+++L+ 
Sbjct: 124  RTVLTQLQWE------ANL-------HKKPHPVPVHRLGRGTSGILLCAKTKLARARLAS 170

Query: 704  DFADGTLSMKNVRSTANDIRKKRQISKIYRALVQGIVDHNTIVINQPIGKIQYPGVACGL 525
             FADGT  +   R T  +I K   I+KIYR L  GIV+++ + INQPIG ++YPGVA GL
Sbjct: 171  YFADGTSHIGGKRDTNGEIGK---IAKIYRGLASGIVENDEVTINQPIGVVKYPGVAKGL 227

Query: 524  YVATPTGKQAESQVVVLYRDKKRNCTLVEVEIYSGRAHQIRIHMAYIGHPLVGDPLYVSG 345
            YVA+ +GK A S V +L R+ + N TLV+V+I SGR HQIRIH+++IGHPL+GDPLY  G
Sbjct: 228  YVASQSGKPALSVVGILERNVQENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLYGDG 287

Query: 344  GKPLIPPGSSVSESEHSTIVSFAEDGGYERSPYSMPGDCGYHLHAYQVILQHPISNKVMK 165
            G+P      S+ E       SFAEDGGY+R    +PGDCGY+LHA++++L HP++N++++
Sbjct: 288  GQPKCLDCDSIDE-------SFAEDGGYQRPTKPVPGDCGYNLHAHKLVLSHPLTNELIE 340

Query: 164  IVASPPTTL 138
            I A  P+ L
Sbjct: 341  ITAPLPSVL 349


>ref|XP_003556222.1| PREDICTED: RNA pseudouridine synthase 5-like [Glycine max]
          Length = 371

 Score =  402 bits (1032), Expect = e-109
 Identities = 199/369 (53%), Positives = 269/369 (72%)
 Frame = -1

Query: 1244 EFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDG 1065
            +FG+PWPE N+GL Y D+V+ S + +  TL++FYS  YKSSAP +GWLQRI++GQI+VDG
Sbjct: 6    KFGIPWPECNDGLSYDDVVRASDAGA--TLIEFYSTKYKSSAPLQGWLQRIKSGQITVDG 63

Query: 1064 MVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQ 885
             VV +++T+L  GS L+YHR+PWKEP AP+ I +LYED+ ++ +NKP+GLQVLPGGL+QQ
Sbjct: 64   GVVTDSNTVLRVGSKLIYHRLPWKEPDAPHMIDVLYEDDDMIALNKPSGLQVLPGGLYQQ 123

Query: 884  RTVLAQLQWKYTQSTNANMFTDKIKHHSIACPAPVHRLGRGTSGILLCAKTKGAKSKLSL 705
            RT+L QLQW+        M       H    P PVHRLGRGTSGILLCAKTK A+++L+ 
Sbjct: 124  RTILTQLQWEANNQGTCEM-------HKRLHPVPVHRLGRGTSGILLCAKTKLARARLAS 176

Query: 704  DFADGTLSMKNVRSTANDIRKKRQISKIYRALVQGIVDHNTIVINQPIGKIQYPGVACGL 525
             FADGT  +   R T  ++ K   I+K+YRALV GIV+++ + INQPIG ++YPGVA GL
Sbjct: 177  HFADGTSHVGGKRDTKQELGK---IAKMYRALVSGIVENDKVTINQPIGIVKYPGVAKGL 233

Query: 524  YVATPTGKQAESQVVVLYRDKKRNCTLVEVEIYSGRAHQIRIHMAYIGHPLVGDPLYVSG 345
            YVA+ +GK A S V +L  + + N TLV+V+I SGR HQIRIH+++IGHPL+GDPLY  G
Sbjct: 234  YVASESGKPALSVVDILETNIQENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLYGVG 293

Query: 344  GKPLIPPGSSVSESEHSTIVSFAEDGGYERSPYSMPGDCGYHLHAYQVILQHPISNKVMK 165
            G+P       V E       SFAEDGGY+R    +PGDCGY+LHA++++L HP +N++++
Sbjct: 294  GQPKCLDCDFVDE-------SFAEDGGYQRPTKPVPGDCGYYLHAHKLVLSHPTTNELIE 346

Query: 164  IVASPPTTL 138
            I+A  P+ L
Sbjct: 347  IIAPLPSAL 355


>emb|CBI31488.3| unnamed protein product [Vitis vinifera]
          Length = 347

 Score =  402 bits (1032), Expect = e-109
 Identities = 205/356 (57%), Positives = 260/356 (73%)
 Frame = -1

Query: 1241 FGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDGM 1062
            FGVPWP++N+GL Y D+V  S+S S +TL+D+YS+ +K+SAP +GWLQRI  GQI+VDG 
Sbjct: 5    FGVPWPDFNDGLTYNDVV--SASDSELTLIDYYSSKHKNSAPLQGWLQRINKGQITVDGT 62

Query: 1061 VVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQR 882
            VV    TIL  GS LVYHR+PW+EP APY + ILYED+ ++ +NKP+GLQVLPGGLFQQR
Sbjct: 63   VVTEPKTILRAGSKLVYHRLPWQEPDAPYLLEILYEDDDVIALNKPSGLQVLPGGLFQQR 122

Query: 881  TVLAQLQWKYTQSTNANMFTDKIKHHSIACPAPVHRLGRGTSGILLCAKTKGAKSKLSLD 702
            TVL QLQW+   +   N      + HS+    PVHRLGRGTSGILLCAKTK AK++L+  
Sbjct: 123  TVLTQLQWR---ANKQNSLPACQESHSV----PVHRLGRGTSGILLCAKTKLAKTRLAAY 175

Query: 701  FADGTLSMKNVRSTANDIRKKRQISKIYRALVQGIVDHNTIVINQPIGKIQYPGVACGLY 522
            FADGT  +   R      R  R+ISKIYRALV GI+D + IVI QPIG +QYPGVA GLY
Sbjct: 176  FADGTSVVGGNRDADMKSRTMRKISKIYRALVNGILDKDEIVIEQPIGMVQYPGVAKGLY 235

Query: 521  VATPTGKQAESQVVVLYRDKKRNCTLVEVEIYSGRAHQIRIHMAYIGHPLVGDPLYVSGG 342
            VA+P+GK A S+V +L RD + +  +V+VEI SGR HQIRIH+++IGHPL+GDPLYV GG
Sbjct: 236  VASPSGKPALSKVSILERDVQGDHMIVQVEIQSGRPHQIRIHLSFIGHPLLGDPLYVPGG 295

Query: 341  KPLIPPGSSVSESEHSTIVSFAEDGGYERSPYSMPGDCGYHLHAYQVILQHPISNK 174
            +P        +E       S+A DGGY+R    +PGDCGYHLHA+Q++L HP +N+
Sbjct: 296  QPKCCDAEFTNE-------SYALDGGYQRPVKPVPGDCGYHLHAHQLVLSHPTTNE 344