BLASTX nr result
ID: Ephedra26_contig00008284
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00008284
(1121 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAO20842.1| RNA polymerase II largest subunit, partial [Daph... 67 1e-08
gb|EFX75312.1| hypothetical protein DAPPUDRAFT_306846 [Daphnia p... 67 1e-08
gb|AAB24966.1| RNA polymerase II largest subunit [Dictyostelium ... 67 2e-08
ref|XP_641735.1| RNA polymerase II largest subunit [Dictyosteliu... 67 2e-08
gb|EMT33557.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi... 67 2e-08
dbj|BAO48654.1| RNA polymerase II largest subunit, partial [Hyle... 66 2e-08
ref|XP_005889995.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 65 4e-08
gb|ERL85646.1| hypothetical protein D910_03063 [Dendroctonus pon... 65 4e-08
gb|EQB60117.1| rna polymerase ii largest subunit [Nosema apis BR... 65 4e-08
gb|ENN74613.1| hypothetical protein YQE_08734, partial [Dendroct... 65 4e-08
dbj|BAO20841.1| RNA polymerase II largest subunit, partial [Proc... 65 5e-08
dbj|BAJ52637.1| RNA polymerase II largest subunit [Monosiga ovata] 65 5e-08
emb|CBY21018.1| unnamed protein product [Oikopleura dioica] 65 5e-08
gb|ELU15060.1| hypothetical protein CAPTEDRAFT_170227 [Capitella... 65 6e-08
emb|CAA36736.1| DNA-directed RNA polymerase [Glycine max] 65 6e-08
dbj|BAO48663.1| RNA polymerase II largest subunit, partial [Paur... 64 8e-08
dbj|BAO41803.1| DNA-directed RNA polymerase II subunit RPB1 [Klu... 64 8e-08
gb|EPX72235.1| RNA polymerase II large subunit Rpb1 [Schizosacch... 64 8e-08
emb|CCH44586.1| DNA-directed RNA polymerase II subunit [Wickerha... 64 8e-08
ref|XP_006677630.1| hypothetical protein BATDEDRAFT_86817 [Batra... 64 8e-08
>dbj|BAO20842.1| RNA polymerase II largest subunit, partial [Daphnia pulicaria]
Length = 1764
Score = 67.4 bits (163), Expect = 1e-08
Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 9/152 (5%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
APT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 1570 APTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPT-SPSYSPTSPSYSPT 1628
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+P+ T+PSY +PS + T+PSY P +PT S +P+ P + PS S S
Sbjct: 1629 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSP-SSPSYSPTSPSYSPTSPS 1687
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
++P+Y SPSY + P+ SPS
Sbjct: 1688 YSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1719
Score = 65.9 bits (159), Expect = 3e-08
Identities = 44/145 (30%), Positives = 65/145 (44%)
Frame = -1
Query: 1121 VTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNTAPST 942
+ +P M P Y PS+P + T ++PS SP S P+ N +P T
Sbjct: 1553 IPSPGMSPSYSPSSPAYAPTSPSMTP-----------SSPSYSPTSPSYSPTSPNYSP-T 1600
Query: 941 TPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXX 762
+P Y +PS + T+PSY P +P+ S +PT P PS S S
Sbjct: 1601 SPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSP-TSPSYSPTSPSYSPTSPSYSPTSPT 1659
Query: 761 XPANAPAYVTKSPSYPSSVPAMSPS 687
++P+Y SPSY + P+ SP+
Sbjct: 1660 YSPSSPSYSPSSPSYSPTSPSYSPT 1684
Score = 63.5 bits (153), Expect = 1e-07
Identities = 50/151 (33%), Positives = 67/151 (44%), Gaps = 9/151 (5%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +PS SP Y PS S T
Sbjct: 1619 SPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS-SPSYSPSSPSYSPT 1677
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+PS T+PSY +PS + ++PSY P +P+ S PT P ++ PSSPQ S
Sbjct: 1678 SPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS---PTSPSYS-PSSPQYS--------- 1724
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 690
+PAY SP Y + P+ SP
Sbjct: 1725 ---------PRSPAYSPSSPKYSPTSPSYSP 1746
Score = 59.7 bits (143), Expect = 2e-06
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
Frame = -1
Query: 1115 APTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNTAPS--- 945
+PT P Y P++P S T +P+ SP Y PS S T+PS
Sbjct: 1598 SPTSPG-YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPT-SPSYSPTSPSYSPTSPSYSP 1655
Query: 944 TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXX 765
T+P+Y +PS + ++PSY P +P+ S +P+ P PS S S
Sbjct: 1656 TSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSYSP-TSPSYSPSSPSYTPASPSYSPTSP 1714
Query: 764 XXPANAPAYVTKSPSYPSSVPAMSPS 687
++P Y +SP+Y S P SP+
Sbjct: 1715 SYSPSSPQYSPRSPAYSPSSPKYSPT 1740
>gb|EFX75312.1| hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex]
Length = 1895
Score = 67.4 bits (163), Expect = 1e-08
Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 9/152 (5%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
APT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 1592 APTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPT-SPSYSPTSPSYSPT 1650
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+P+ T+PSY +PS + T+PSY P +PT S +P+ P + PS S S
Sbjct: 1651 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSP-SSPSYSPTSPSYSPTSPS 1709
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
++P+Y SPSY + P+ SPS
Sbjct: 1710 YSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1741
Score = 65.9 bits (159), Expect = 3e-08
Identities = 44/145 (30%), Positives = 65/145 (44%)
Frame = -1
Query: 1121 VTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNTAPST 942
+ +P M P Y PS+P + T ++PS SP S P+ N +P T
Sbjct: 1575 IPSPGMSPSYSPSSPAYAPTSPSMTP-----------SSPSYSPTSPSYSPTSPNYSP-T 1622
Query: 941 TPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXX 762
+P Y +PS + T+PSY P +P+ S +PT P PS S S
Sbjct: 1623 SPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSP-TSPSYSPTSPSYSPTSPSYSPTSPT 1681
Query: 761 XPANAPAYVTKSPSYPSSVPAMSPS 687
++P+Y SPSY + P+ SP+
Sbjct: 1682 YSPSSPSYSPSSPSYSPTSPSYSPT 1706
Score = 63.5 bits (153), Expect = 1e-07
Identities = 50/151 (33%), Positives = 67/151 (44%), Gaps = 9/151 (5%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +PS SP Y PS S T
Sbjct: 1641 SPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS-SPSYSPSSPSYSPT 1699
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+PS T+PSY +PS + ++PSY P +P+ S PT P ++ PSSPQ S
Sbjct: 1700 SPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS---PTSPSYS-PSSPQYS--------- 1746
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 690
+PAY SP Y + P+ SP
Sbjct: 1747 ---------PRSPAYSPSSPKYSPTSPSYSP 1768
>gb|AAB24966.1| RNA polymerase II largest subunit [Dictyostelium discoideum]
Length = 902
Score = 66.6 bits (161), Expect = 2e-08
Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 736 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPT-SPSYSPTSPSYSPT 794
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+PS T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 795 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPS 853
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
++P+Y SPSY S P+ SPS
Sbjct: 854 YSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPS 885
Score = 63.5 bits (153), Expect = 1e-07
Identities = 49/154 (31%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 729 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPFYSPTSPSYSPT 787
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFN--KPSSPQKSMSQETXX 789
+PS T+PSY +PS + T+PSY P +P+ +PT P ++ PS S S
Sbjct: 788 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS---YSPTSPSYSPTSPSYSPTSPSYSPTS 844
Query: 788 XXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY S P+ SPS
Sbjct: 845 PSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPS 878
Score = 60.8 bits (146), Expect = 9e-07
Identities = 48/150 (32%), Positives = 68/150 (45%), Gaps = 9/150 (6%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 757 SPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT 815
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+PS T+PSY +PS + T+PSY P +P+ S PT P ++ P+SP S S +
Sbjct: 816 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS---PTSPSYS-PTSPSYSPSSPSYSP- 870
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVPAMS 693
++P+Y SPSY S P +
Sbjct: 871 ----------SSPSYSPSSPSYSPSSPTFT 890
Score = 58.2 bits (139), Expect = 6e-06
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Frame = -1
Query: 995 SPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTP----TASVMTPTMPPF 837
SP Y PS S T+PS T+PSY +PS + T+PSY P +P T+ +PT P +
Sbjct: 725 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSY 784
Query: 836 NKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
+ P+SP S + + +P+Y SPSY + P+ SP+
Sbjct: 785 S-PTSPSYSPTSPS-----------YSPTSPSYSPTSPSYSPTSPSYSPT 822
>ref|XP_641735.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
gi|166202448|sp|P35084.2|RPB1_DICDI RecName:
Full=DNA-directed RNA polymerase II subunit rpb1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III subunit A
gi|60469758|gb|EAL67745.1| RNA polymerase II largest
subunit [Dictyostelium discoideum AX4]
Length = 1727
Score = 66.6 bits (161), Expect = 2e-08
Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 1561 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPT-SPSYSPTSPSYSPT 1619
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+PS T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1620 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPS 1678
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
++P+Y SPSY S P+ SPS
Sbjct: 1679 YSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPS 1710
Score = 63.5 bits (153), Expect = 1e-07
Identities = 49/154 (31%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 1554 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPFYSPTSPSYSPT 1612
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFN--KPSSPQKSMSQETXX 789
+PS T+PSY +PS + T+PSY P +P+ +PT P ++ PS S S
Sbjct: 1613 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS---YSPTSPSYSPTSPSYSPTSPSYSPTS 1669
Query: 788 XXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY S P+ SPS
Sbjct: 1670 PSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPS 1703
Score = 60.8 bits (146), Expect = 9e-07
Identities = 48/150 (32%), Positives = 68/150 (45%), Gaps = 9/150 (6%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 1582 SPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT 1640
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+PS T+PSY +PS + T+PSY P +P+ S PT P ++ P+SP S S +
Sbjct: 1641 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS---PTSPSYS-PTSPSYSPSSPSYSP- 1695
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVPAMS 693
++P+Y SPSY S P +
Sbjct: 1696 ----------SSPSYSPSSPSYSPSSPTFT 1715
Score = 58.2 bits (139), Expect = 6e-06
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Frame = -1
Query: 995 SPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTP----TASVMTPTMPPF 837
SP Y PS S T+PS T+PSY +PS + T+PSY P +P T+ +PT P +
Sbjct: 1550 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSY 1609
Query: 836 NKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
+ P+SP S + + +P+Y SPSY + P+ SP+
Sbjct: 1610 S-PTSPSYSPTSPS-----------YSPTSPSYSPTSPSYSPTSPSYSPT 1647
>gb|EMT33557.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii]
Length = 1905
Score = 66.6 bits (161), Expect = 2e-08
Identities = 52/152 (34%), Positives = 69/152 (45%), Gaps = 9/152 (5%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +PS SP Y PS S T
Sbjct: 1665 SPTSPSYSPTSPAYCPTSPSYSPTSPAYCPTSPAYSPTSPAYSPS-SPSYNPTSPSYSPT 1723
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+PS T+PSY +PS + T+PSY P +PT S PT P + KP+SP S +
Sbjct: 1724 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPTYS---PTSPSY-KPTSPSYSPTSPA---- 1775
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
++P Y SPSY + P+ SPS
Sbjct: 1776 -------YSPSSPGYCPTSPSYSPTSPSYSPS 1800
>dbj|BAO48654.1| RNA polymerase II largest subunit, partial [Hyleoglomeris sp. R077]
Length = 1782
Score = 66.2 bits (160), Expect = 2e-08
Identities = 47/147 (31%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Frame = -1
Query: 1121 VTAPT--MPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNTAP 948
+T+PT + P Y PS+PI + + T+PS SP S P+ N +P
Sbjct: 1579 ITSPTGALSPGYSPSSPIYAPSSPSATPQSPSYSP----TSPSYSPTSPSYSPTSPNYSP 1634
Query: 947 STTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXX 768
T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1635 -TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTS 1692
Query: 767 XXXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY + P+ SPS
Sbjct: 1693 PSYSPTSPSYSPTSPSYSPTSPSYSPS 1719
Score = 63.2 bits (152), Expect = 2e-07
Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 3/147 (2%)
Frame = -1
Query: 1118 TAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNTAPS-- 945
+A P Y P++P S T +P+ SP Y PS S T+PS
Sbjct: 1603 SATPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYS 1661
Query: 944 -TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXX 768
T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1662 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPSS 1720
Query: 767 XXXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY + P+ SP+
Sbjct: 1721 PNYTPTSPSYSPTSPSYSPTSPSYSPT 1747
Score = 62.8 bits (151), Expect = 2e-07
Identities = 46/146 (31%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
Frame = -1
Query: 1115 APTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNTAPS--- 945
+PT P Y P++P S T +P+ SP Y PS S T+PS
Sbjct: 1612 SPTSPS-YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSP 1669
Query: 944 TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXX 765
T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1670 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPSSPNYTPTSP 1728
Query: 764 XXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY + P+ SP+
Sbjct: 1729 SYSPTSPSYSPTSPSYSPTSPSYSPT 1754
Score = 59.3 bits (142), Expect = 3e-06
Identities = 49/155 (31%), Positives = 67/155 (43%), Gaps = 13/155 (8%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 1633 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT 1691
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSSPQKSMSQET 795
+PS T+PSY +PS + T+PSY P TPT+ +PT P ++ P+SP S
Sbjct: 1692 SPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPTSPSYSPTSPSYS-PTSPSYS----- 1745
Query: 794 XXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 690
+P+Y SPSY + P SP
Sbjct: 1746 -------------PTSPSYSPTSPSYSPNSPHYSP 1767
>ref|XP_005889995.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Bos mutus]
Length = 1942
Score = 65.5 bits (158), Expect = 4e-08
Identities = 48/152 (31%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 1644 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT 1702
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+PS T+PSY +PS + T+PSY P +P S +P P + PS S+S
Sbjct: 1703 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPIS-PSYSPTSLSYSPTSPN 1761
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY + P+ SPS
Sbjct: 1762 YTPTSPNYSPTSPSYSLTSPSYSPTSPSYSPS 1793
Score = 58.9 bits (141), Expect = 4e-06
Identities = 49/149 (32%), Positives = 69/149 (46%), Gaps = 6/149 (4%)
Frame = -1
Query: 1115 APTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPS---VSPMYKSGLPSKSNTAPS 945
+PT P Y P++P S T T+PS SP Y PS S T+PS
Sbjct: 1616 SPTSPS-YSPTSPSYSPTSPNYSP-----------TSPSYSPTSPSYSPTSPSYSPTSPS 1663
Query: 944 ---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXX 774
T+PSY +PS + T+PSY P +P+ S PT P ++ P+SP S + +
Sbjct: 1664 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS---PTSPSYS-PTSPSYSPTSPS------- 1712
Query: 773 XXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY + P SP+
Sbjct: 1713 ----YSPTSPSYSPTSPSYSPTSPNYSPT 1737
>gb|ERL85646.1| hypothetical protein D910_03063 [Dendroctonus ponderosae]
Length = 1871
Score = 65.5 bits (158), Expect = 4e-08
Identities = 49/146 (33%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
Frame = -1
Query: 1115 APTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNTAPS--- 945
APT P Y PS+P S T +P+ SP Y PS S T+PS
Sbjct: 1579 APTSPGGYGPSSPGYSPTSPHYSPTSPAYSPASPRYSPT-SPGYSPTSPSYSPTSPSYSP 1637
Query: 944 TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXX 765
T+PSY +PS + T+PSY P +P+ S +PT P + SP T
Sbjct: 1638 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPGYSPTSPSYSPT---------- 1687
Query: 764 XXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY + PA SP+
Sbjct: 1688 -----SPSYSPTSPSYSPTSPAYSPA 1708
>gb|EQB60117.1| rna polymerase ii largest subunit [Nosema apis BRL 01]
Length = 1628
Score = 65.5 bits (158), Expect = 4e-08
Identities = 48/154 (31%), Positives = 67/154 (43%), Gaps = 9/154 (5%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 1466 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT 1524
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+PS T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1525 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPS 1583
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSDF 681
+P+Y SPSY + P+ SP +F
Sbjct: 1584 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPKNF 1617
Score = 62.4 bits (150), Expect = 3e-07
Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Frame = -1
Query: 1100 PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSY 930
P Y P++P S T +P+ SP Y PS S T+PS T+PSY
Sbjct: 1442 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSY 1500
Query: 929 KSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPAN 750
+PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1501 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1559
Query: 749 APAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY + P+ SP+
Sbjct: 1560 SPSYSPTSPSYSPTSPSYSPT 1580
Score = 58.9 bits (141), Expect = 4e-06
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Frame = -1
Query: 1001 SVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNK 831
S SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ +PT P ++
Sbjct: 1439 SASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS---YSPTSPSYS- 1494
Query: 830 PSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
P+SP S + + +P+Y SPSY + P+ SP+
Sbjct: 1495 PTSPSYSPTSPS-----------YSPTSPSYSPTSPSYSPTSPSYSPT 1531
>gb|ENN74613.1| hypothetical protein YQE_08734, partial [Dendroctonus ponderosae]
Length = 1879
Score = 65.5 bits (158), Expect = 4e-08
Identities = 49/146 (33%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
Frame = -1
Query: 1115 APTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNTAPS--- 945
APT P Y PS+P S T +P+ SP Y PS S T+PS
Sbjct: 1587 APTSPGGYGPSSPGYSPTSPHYSPTSPAYSPASPRYSPT-SPGYSPTSPSYSPTSPSYSP 1645
Query: 944 TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXX 765
T+PSY +PS + T+PSY P +P+ S +PT P + SP T
Sbjct: 1646 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPGYSPTSPSYSPT---------- 1695
Query: 764 XXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY + PA SP+
Sbjct: 1696 -----SPSYSPTSPSYSPTSPAYSPA 1716
>dbj|BAO20841.1| RNA polymerase II largest subunit, partial [Procambarus clarkii]
Length = 1733
Score = 65.1 bits (157), Expect = 5e-08
Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 6/150 (4%)
Frame = -1
Query: 1118 TAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNTAP 948
T+P++ P Y P++P S T +P+ SP Y PS S T+P
Sbjct: 1594 TSPSLTPASPGYSPTSPTYSPTSPRYSPTSPQYSPTSPSYSPT-SPSYSPTSPSYSPTSP 1652
Query: 947 S---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXX 777
S T+PSY +PS + T+PSY P +P+ S +P+ P PSSP S + +
Sbjct: 1653 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYAPNYSPSSPGYSPTSPS------ 1706
Query: 776 XXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
++P Y SPSY + P SP+
Sbjct: 1707 -----YSPSSPQYSPASPSYSPTSPKYSPT 1731
>dbj|BAJ52637.1| RNA polymerase II largest subunit [Monosiga ovata]
Length = 1289
Score = 65.1 bits (157), Expect = 5e-08
Identities = 49/152 (32%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 1128 SPTSPKYSPTSPSYSPTSPSYSPTSPKYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT 1186
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+PS T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1187 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPS 1245
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
++P Y SPSY S P+ SPS
Sbjct: 1246 YSPTSPSYSPSSPNYSPSSPSYSPSSPSYSPS 1277
Score = 60.1 bits (144), Expect = 2e-06
Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 6/149 (4%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T T+PS SP S P+
Sbjct: 1107 SPTSPKYSPTSPSYSPTSPSYSPTSPKYSP-----------TSPSYSPTSPSYSPTSPKY 1155
Query: 953 APSTTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXX 774
+P T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1156 SP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSP 1213
Query: 773 XXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY + P+ SP+
Sbjct: 1214 TSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1242
>emb|CBY21018.1| unnamed protein product [Oikopleura dioica]
Length = 928
Score = 65.1 bits (157), Expect = 5e-08
Identities = 48/154 (31%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 704 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPT-SPSYSPTSPSYSPT 762
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMS--QETXX 789
+PS T+P+Y +PS + T+PSY P +P + +P P PSSP S + + T
Sbjct: 763 SPSYSPTSPNYSPTSPSYSPTSPSYSPSSPAYTPSSPKYSPTYSPSSPSYSPASPKYTGG 822
Query: 788 XXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
+P Y SP+Y S PA SP+
Sbjct: 823 DGGTPGSKAYSPTSPTYSPSSPNYSPSSPAYSPA 856
Score = 59.7 bits (143), Expect = 2e-06
Identities = 46/150 (30%), Positives = 67/150 (44%), Gaps = 7/150 (4%)
Frame = -1
Query: 1115 APTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNTAPS--- 945
+P P Y P P S T +P+ SP Y PS S T+PS
Sbjct: 633 SPGYSPNYSPDGPGYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSP 691
Query: 944 TTPSYKSVAPSKAVTAPSYKPLTP----TASVMTPTMPPFNKPSSPQKSMSQETXXXXXX 777
T+PSY +PS + T+PSY P +P T+ +PT P ++ P+SP S + +
Sbjct: 692 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPNYSPTSPS------ 744
Query: 776 XXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY + P+ SP+
Sbjct: 745 -----YSPTSPSYSPTSPSYSPTSPSYSPT 769
>gb|ELU15060.1| hypothetical protein CAPTEDRAFT_170227 [Capitella teleta]
Length = 1916
Score = 64.7 bits (156), Expect = 6e-08
Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 9/152 (5%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 1609 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT 1667
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+PS T+PSY +PS + T+P+Y P +P+ S +P+ P + SPQ S S
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPNYSPQ-SPSYSPTSPS 1726
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY + P+ SPS
Sbjct: 1727 YSPSSPKYSPTSPSYSPTSPSYSPTSPSYSPS 1758
Score = 63.5 bits (153), Expect = 1e-07
Identities = 49/155 (31%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 1623 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT 1681
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFN---KPSSPQKSMSQETX 792
+PS T+P+Y +PS + T+PSY P +P S +P+ P + PSSP+ S + +
Sbjct: 1682 SPSYSPTSPNYSPTSPSYSPTSPSYSPTSPNYSPQSPSYSPTSPSYSPSSPKYSPTSPS- 1740
Query: 791 XXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY S P SPS
Sbjct: 1741 ----------YSPTSPSYSPTSPSYSPSSPQYSPS 1765
Score = 62.0 bits (149), Expect = 4e-07
Identities = 50/152 (32%), Positives = 69/152 (45%), Gaps = 9/152 (5%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 1665 SPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPT-SPNYSPQSPSYSPT 1723
Query: 953 APSTTPS---YKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+PS +PS Y +PS + T+PSY P +P+ S P+ P ++ PSSPQ S +
Sbjct: 1724 SPSYSPSSPKYSPTSPSYSPTSPSYSPTSPSYS---PSSPQYS-PSSPQYSPA------- 1772
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
+N+P Y SP Y S P+ SPS
Sbjct: 1773 ---------SNSPQYTPASPHYSPSSPSYSPS 1795
Score = 59.7 bits (143), Expect = 2e-06
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Frame = -1
Query: 1004 PSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFN 834
P SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ +PT P ++
Sbjct: 1595 PPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS---YSPTSPSYS 1651
Query: 833 KPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
P+SP S + + +P+Y SPSY + P+ SP+
Sbjct: 1652 -PTSPSYSPTSPS-----------YSPTSPSYSPTSPSYSPTSPSYSPT 1688
Score = 58.5 bits (140), Expect = 5e-06
Identities = 42/138 (30%), Positives = 57/138 (41%)
Frame = -1
Query: 1100 PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPSYKSV 921
P Y PS+P S +PS SP PS N +P T+PSY
Sbjct: 1532 PSYSPSSPSFMPASPATPHSPAYSPQSYSPASPSYSPGSAGYSPSSPNFSP-TSPSYSPT 1590
Query: 920 APSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPA 741
+PS T+PSY P +P+ S +P+ P PS S S +P+
Sbjct: 1591 SPSYPPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1649
Query: 740 YVTKSPSYPSSVPAMSPS 687
Y SPSY + P+ SP+
Sbjct: 1650 YSPTSPSYSPTSPSYSPT 1667
Score = 58.2 bits (139), Expect = 6e-06
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Frame = -1
Query: 995 SPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPS 825
SP + PS S T+PS T+PSY +PS + T+PSY P +P+ S +P+ P PS
Sbjct: 1577 SPNFSPTSPSYSPTSPSYPPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPS 1635
Query: 824 SPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
S S +P+Y SPSY + P+ SP+
Sbjct: 1636 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1681
>emb|CAA36736.1| DNA-directed RNA polymerase [Glycine max]
Length = 977
Score = 64.7 bits (156), Expect = 6e-08
Identities = 48/153 (31%), Positives = 67/153 (43%), Gaps = 10/153 (6%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 781 SPTSPSYSPTSPAYSPTSPAYSSTSPAYSPTSPSYSPTSPAYSPT-SPSYSLTSPSYSPT 839
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSP-QKSMSQETXXX 786
+PS T+PSY +P+ + T+PSY P +P+ S PT P +N S+ S++
Sbjct: 840 SPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYS---PTSPSYNPQSAKYSPSLAYSPSSP 896
Query: 785 XXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY S P SPS
Sbjct: 897 RLSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPS 929
>dbj|BAO48663.1| RNA polymerase II largest subunit, partial [Pauropodidae sp. My085]
Length = 1648
Score = 64.3 bits (155), Expect = 8e-08
Identities = 46/146 (31%), Positives = 64/146 (43%), Gaps = 6/146 (4%)
Frame = -1
Query: 1106 MPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPS---VSPMYKSGLPSKSNTAPS--- 945
+ P Y PS+P + S T+PS SP Y PS S T+PS
Sbjct: 1498 LSPSYSPSSPYGLASPSGQSPSYSASGSNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1557
Query: 944 TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXX 765
T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1558 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSP 1616
Query: 764 XXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY + P+ SP+
Sbjct: 1617 SYSPTSPSYSPTSPSYSPTSPSYSPT 1642
Score = 59.7 bits (143), Expect = 2e-06
Identities = 49/148 (33%), Positives = 69/148 (46%), Gaps = 6/148 (4%)
Frame = -1
Query: 1115 APTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPS---VSPMYKSGLPSKSNTAPS 945
+PT P Y P++P S T T+PS SP Y PS S T+PS
Sbjct: 1528 SPTSPS-YSPTSPSYSPTSPSYSP-----------TSPSYSPTSPSYSPTSPSYSPTSPS 1575
Query: 944 ---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXX 774
T+PSY +PS + T+PSY P +P+ S PT P ++ P+SP S + +
Sbjct: 1576 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS---PTSPSYS-PTSPSYSPTSPS------- 1624
Query: 773 XXXXXPANAPAYVTKSPSYPSSVPAMSP 690
+P+Y SPSY + P+ SP
Sbjct: 1625 ----YSPTSPSYSPTSPSYSPTSPSYSP 1648
>dbj|BAO41803.1| DNA-directed RNA polymerase II subunit RPB1 [Kluyveromyces marxianus
DMKU3-1042]
Length = 1727
Score = 64.3 bits (155), Expect = 8e-08
Identities = 48/153 (31%), Positives = 66/153 (43%), Gaps = 10/153 (6%)
Frame = -1
Query: 1115 APTMP-------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSN 957
APT P P Y P++P S T +P+ SP Y PS S
Sbjct: 1529 APTSPGFGEATSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSP 1587
Query: 956 TAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXX 786
T+PS T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1588 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSP 1646
Query: 785 XXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY + P+ SP+
Sbjct: 1647 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1679
Score = 63.2 bits (152), Expect = 2e-07
Identities = 47/152 (30%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 1544 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT 1602
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+PS T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1603 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPS 1661
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY + P+ SP+
Sbjct: 1662 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1693
Score = 63.2 bits (152), Expect = 2e-07
Identities = 47/152 (30%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 1551 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT 1609
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+PS T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1610 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPS 1668
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY + P+ SP+
Sbjct: 1669 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1700
Score = 62.0 bits (149), Expect = 4e-07
Identities = 46/154 (29%), Positives = 65/154 (42%), Gaps = 9/154 (5%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 1558 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT 1616
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+PS T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1617 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPS 1675
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSDF 681
+P+Y SPSY + P +P +
Sbjct: 1676 YSPTSPSYSPTSPSYSPTSPSYSPTSPQYNPGSY 1709
>gb|EPX72235.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces octosporus
yFS286]
Length = 1759
Score = 64.3 bits (155), Expect = 8e-08
Identities = 48/152 (31%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 1607 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT 1665
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+PS T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1666 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPS 1724
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY + P+ SPS
Sbjct: 1725 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPS 1756
Score = 63.5 bits (153), Expect = 1e-07
Identities = 45/141 (31%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Frame = -1
Query: 1100 PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSY 930
P Y PS+P S T +P+ SP Y PS S T+PS T+PSY
Sbjct: 1569 PTYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSY 1627
Query: 929 KSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPAN 750
+PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1628 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1686
Query: 749 APAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY + P+ SP+
Sbjct: 1687 SPSYSPTSPSYSPTSPSYSPT 1707
Score = 59.3 bits (142), Expect = 3e-06
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Frame = -1
Query: 1001 SVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNK 831
S SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ +PT P ++
Sbjct: 1566 STSPTYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS---YSPTSPSYS- 1621
Query: 830 PSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
P+SP S + + +P+Y SPSY + P+ SP+
Sbjct: 1622 PTSPSYSPTSPS-----------YSPTSPSYSPTSPSYSPTSPSYSPT 1658
>emb|CCH44586.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 1688
Score = 64.3 bits (155), Expect = 8e-08
Identities = 48/152 (31%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
APT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 1504 APTSPTGFAASPAYAPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT 1562
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+PS T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1563 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPS 1621
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY + P+ SP+
Sbjct: 1622 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1653
>ref|XP_006677630.1| hypothetical protein BATDEDRAFT_86817 [Batrachochytrium dendrobatidis
JAM81] gi|328772047|gb|EGF82086.1| hypothetical protein
BATDEDRAFT_86817 [Batrachochytrium dendrobatidis JAM81]
Length = 1797
Score = 64.3 bits (155), Expect = 8e-08
Identities = 48/152 (31%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 1619 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT 1677
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+PS T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1678 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPS 1736
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY + P+ SPS
Sbjct: 1737 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPS 1768
Score = 62.0 bits (149), Expect = 4e-07
Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Frame = -1
Query: 1100 PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSY 930
P Y P++P S T +P+ SP Y PS S T+PS T+PSY
Sbjct: 1581 PNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSY 1639
Query: 929 KSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPAN 750
+PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1640 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1698
Query: 749 APAYVTKSPSYPSSVPAMSPS 687
+P+Y SPSY + P+ SP+
Sbjct: 1699 SPSYSPTSPSYSPTSPSYSPT 1719
Score = 59.7 bits (143), Expect = 2e-06
Identities = 46/147 (31%), Positives = 62/147 (42%), Gaps = 9/147 (6%)
Frame = -1
Query: 1115 APTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSNT 954
+PT P P Y P++P S T +P+ SP Y PS S T
Sbjct: 1626 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT 1684
Query: 953 APS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 783
+PS T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1685 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPS 1743
Query: 782 XXXXXXXXPANAPAYVTKSPSYPSSVP 702
+P+Y SPSY S P
Sbjct: 1744 YSPTSPSYSPTSPSYSPTSPSYSPSSP 1770