BLASTX nr result
ID: Ephedra26_contig00008283
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00008283
(1216 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAJ78672.1| RNA polymerase II largest subunit [Anacanthocori... 63 2e-07
dbj|BAJ78648.1| RNA polymerase II largest subunit [Nipponatelura... 62 4e-07
dbj|BAO20842.1| RNA polymerase II largest subunit, partial [Daph... 62 5e-07
gb|EFX75312.1| hypothetical protein DAPPUDRAFT_306846 [Daphnia p... 62 5e-07
dbj|BAJ78675.1| RNA polymerase II largest subunit [Metylophorus ... 61 8e-07
dbj|BAJ78650.1| RNA polymerase II largest subunit [Isolepisma ja... 61 8e-07
gb|AAB24966.1| RNA polymerase II largest subunit [Dictyostelium ... 60 1e-06
ref|XP_641735.1| RNA polymerase II largest subunit [Dictyosteliu... 60 1e-06
emb|CDH08718.1| probable DNA-directed RNA polymerase II subunit ... 60 1e-06
emb|CDH14013.1| related to DNA-directed RNA polymerase II subuni... 60 1e-06
emb|CDF90990.1| ZYBA0S09-02322g1_1 [Zygosaccharomyces bailii CLI... 60 1e-06
ref|NP_595673.1| RNA polymerase II large subunit Rpb1 [Schizosac... 60 1e-06
ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II su... 60 2e-06
dbj|BAJ78673.1| RNA polymerase II largest subunit [Bemisia tabaci] 60 2e-06
gb|EPX72235.1| RNA polymerase II large subunit Rpb1 [Schizosacch... 60 2e-06
gb|EMT20712.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi... 60 2e-06
gb|EMS50869.1| DNA-directed RNA polymerase II subunit RPB1 [Trit... 60 2e-06
dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare] 60 2e-06
dbj|BAJ78669.1| RNA polymerase II largest subunit [Thrips palmi] 60 2e-06
dbj|BAJ52637.1| RNA polymerase II largest subunit [Monosiga ovata] 60 2e-06
>dbj|BAJ78672.1| RNA polymerase II largest subunit [Anacanthocoris striicornis]
Length = 1743
Score = 63.2 bits (152), Expect = 2e-07
Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 7/159 (4%)
Frame = -1
Query: 1126 PFHNYMSPTKAVTAPT-------MPPLYKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXX 968
P H SP+ +++P PP++ PS+P + T
Sbjct: 1549 PAHGSSSPSSYISSPGGGMSPLYSPPIFGPSSPSATPTSPVYGPSSPPSYSPTTPQYLPT 1608
Query: 967 XXMYKSGVPSKSNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMS 788
Y PS S T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1609 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPS 1667
Query: 787 QETXXXXXXXXXXXXPANAPAYVTKTPSYPSSVPAMSPS 671
+P+Y +PSY + P+ SPS
Sbjct: 1668 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPS 1706
>dbj|BAJ78648.1| RNA polymerase II largest subunit [Nipponatelura sp. 66-1]
Length = 1718
Score = 62.4 bits (150), Expect = 4e-07
Identities = 46/158 (29%), Positives = 65/158 (41%), Gaps = 3/158 (1%)
Frame = -1
Query: 1135 IMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXXX 965
+M P ++ SP A +PTM P Y P++P S T
Sbjct: 1561 VMSPSYSPSSPAYAPASPTMTPASPNYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP 1620
Query: 964 XMYKSGVPSKSNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQ 785
Y PS S T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1621 S-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSY 1678
Query: 784 ETXXXXXXXXXXXXPANAPAYVTKTPSYPSSVPAMSPS 671
+P+Y +PSY + P+ SPS
Sbjct: 1679 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPS 1716
>dbj|BAO20842.1| RNA polymerase II largest subunit, partial [Daphnia pulicaria]
Length = 1764
Score = 62.0 bits (149), Expect = 5e-07
Identities = 48/163 (29%), Positives = 69/163 (42%), Gaps = 9/163 (5%)
Frame = -1
Query: 1132 MPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXXXX 962
M P ++ SP A T+P+M P Y P++P S T
Sbjct: 1558 MSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPS 1617
Query: 961 MYKSGVPSKSNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFN---KPSSPQ--- 800
Y PS S T+P+Y +PS + T+PSY P +P+ S +PT P + PSSP
Sbjct: 1618 -YSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSP 1676
Query: 799 KSMSQETXXXXXXXXXXXXPANAPAYVTKTPSYPSSVPAMSPS 671
S S ++P+Y +PSY + P+ SPS
Sbjct: 1677 TSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1719
>gb|EFX75312.1| hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex]
Length = 1895
Score = 62.0 bits (149), Expect = 5e-07
Identities = 48/163 (29%), Positives = 69/163 (42%), Gaps = 9/163 (5%)
Frame = -1
Query: 1132 MPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXXXX 962
M P ++ SP A T+P+M P Y P++P S T
Sbjct: 1580 MSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPS 1639
Query: 961 MYKSGVPSKSNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFN---KPSSPQ--- 800
Y PS S T+P+Y +PS + T+PSY P +P+ S +PT P + PSSP
Sbjct: 1640 -YSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSP 1698
Query: 799 KSMSQETXXXXXXXXXXXXPANAPAYVTKTPSYPSSVPAMSPS 671
S S ++P+Y +PSY + P+ SPS
Sbjct: 1699 TSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1741
>dbj|BAJ78675.1| RNA polymerase II largest subunit [Metylophorus sp. E-43]
Length = 1792
Score = 61.2 bits (147), Expect = 8e-07
Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 3/157 (1%)
Frame = -1
Query: 1132 MPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXXXX 962
+ P ++ SPT A T+P+M P Y P++P S T
Sbjct: 1584 LSPSYSPSSPTYAPTSPSMSPASPNYSPTSPSYSPTSPN--------------------- 1622
Query: 961 MYKSGVPSKSNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQE 782
Y PS S T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1623 -YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYS 1680
Query: 781 TXXXXXXXXXXXXPANAPAYVTKTPSYPSSVPAMSPS 671
+P+Y +PSY + P+ SP+
Sbjct: 1681 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1717
>dbj|BAJ78650.1| RNA polymerase II largest subunit [Isolepisma japonica]
Length = 1775
Score = 61.2 bits (147), Expect = 8e-07
Identities = 45/157 (28%), Positives = 65/157 (41%), Gaps = 3/157 (1%)
Frame = -1
Query: 1132 MPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXXXX 962
M P ++ SP A T+P+M P Y P++P S T
Sbjct: 1582 MSPSYSPSSPAYAPTSPSMTPASPNYSPTSPSYSPTSPK--------------------- 1620
Query: 961 MYKSGVPSKSNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQE 782
Y PS S T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1621 -YSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYS 1678
Query: 781 TXXXXXXXXXXXXPANAPAYVTKTPSYPSSVPAMSPS 671
+P+Y +PSY + P+ SP+
Sbjct: 1679 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1715
>gb|AAB24966.1| RNA polymerase II largest subunit [Dictyostelium discoideum]
Length = 902
Score = 60.5 bits (145), Expect = 1e-06
Identities = 46/156 (29%), Positives = 62/156 (39%), Gaps = 6/156 (3%)
Frame = -1
Query: 1108 SPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXXXXMYKSG 947
SPT +PT P P Y P++P S T Y
Sbjct: 757 SPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPS----------------------YSPT 794
Query: 946 VPSKSNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 767
PS S T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 795 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPS 853
Query: 766 XXXXXXXXPANAPAYVTKTPSYPSSVPAMSPSDFPF 659
++P+Y +PSY S P+ SPS F
Sbjct: 854 YSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPTF 889
Score = 58.5 bits (140), Expect = 5e-06
Identities = 45/152 (29%), Positives = 60/152 (39%), Gaps = 6/152 (3%)
Frame = -1
Query: 1108 SPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXXXXMYKSG 947
SPT +PT P P Y P++P S T Y
Sbjct: 743 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPF----------------------YSPT 780
Query: 946 VPSKSNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 767
PS S T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 781 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPS 839
Query: 766 XXXXXXXXPANAPAYVTKTPSYPSSVPAMSPS 671
+P+Y +PSY S P+ SPS
Sbjct: 840 YSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPS 871
>ref|XP_641735.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
gi|166202448|sp|P35084.2|RPB1_DICDI RecName:
Full=DNA-directed RNA polymerase II subunit rpb1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III subunit A
gi|60469758|gb|EAL67745.1| RNA polymerase II largest
subunit [Dictyostelium discoideum AX4]
Length = 1727
Score = 60.5 bits (145), Expect = 1e-06
Identities = 46/156 (29%), Positives = 62/156 (39%), Gaps = 6/156 (3%)
Frame = -1
Query: 1108 SPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXXXXMYKSG 947
SPT +PT P P Y P++P S T Y
Sbjct: 1582 SPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPS----------------------YSPT 1619
Query: 946 VPSKSNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 767
PS S T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1620 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPS 1678
Query: 766 XXXXXXXXPANAPAYVTKTPSYPSSVPAMSPSDFPF 659
++P+Y +PSY S P+ SPS F
Sbjct: 1679 YSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPTF 1714
Score = 58.5 bits (140), Expect = 5e-06
Identities = 45/152 (29%), Positives = 60/152 (39%), Gaps = 6/152 (3%)
Frame = -1
Query: 1108 SPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXXXXMYKSG 947
SPT +PT P P Y P++P S T Y
Sbjct: 1568 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPF----------------------YSPT 1605
Query: 946 VPSKSNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 767
PS S T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1606 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPS 1664
Query: 766 XXXXXXXXPANAPAYVTKTPSYPSSVPAMSPS 671
+P+Y +PSY S P+ SPS
Sbjct: 1665 YSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPS 1696
>emb|CDH08718.1| probable DNA-directed RNA polymerase II subunit RPB1
[Zygosaccharomyces bailii ISA1307]
Length = 1781
Score = 60.5 bits (145), Expect = 1e-06
Identities = 47/159 (29%), Positives = 64/159 (40%), Gaps = 6/159 (3%)
Frame = -1
Query: 1129 PPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXX 968
PP NY SPT +PT P P Y P++P S T
Sbjct: 1605 PPSPNY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS----- 1658
Query: 967 XXMYKSGVPSKSNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMS 788
Y PS S T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1659 ---YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPS 1714
Query: 787 QETXXXXXXXXXXXXPANAPAYVTKTPSYPSSVPAMSPS 671
+P+Y +PSY + P+ SP+
Sbjct: 1715 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1753
>emb|CDH14013.1| related to DNA-directed RNA polymerase II subunit RPB1
[Zygosaccharomyces bailii ISA1307]
Length = 1062
Score = 60.5 bits (145), Expect = 1e-06
Identities = 47/159 (29%), Positives = 64/159 (40%), Gaps = 6/159 (3%)
Frame = -1
Query: 1129 PPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXX 968
PP NY SPT +PT P P Y P++P S T
Sbjct: 886 PPSPNY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS----- 939
Query: 967 XXMYKSGVPSKSNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMS 788
Y PS S T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 940 ---YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPS 995
Query: 787 QETXXXXXXXXXXXXPANAPAYVTKTPSYPSSVPAMSPS 671
+P+Y +PSY + P+ SP+
Sbjct: 996 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1034
>emb|CDF90990.1| ZYBA0S09-02322g1_1 [Zygosaccharomyces bailii CLIB 213]
Length = 1737
Score = 60.5 bits (145), Expect = 1e-06
Identities = 47/159 (29%), Positives = 64/159 (40%), Gaps = 6/159 (3%)
Frame = -1
Query: 1129 PPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXX 968
PP NY SPT +PT P P Y P++P S T
Sbjct: 1561 PPSPNY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS----- 1614
Query: 967 XXMYKSGVPSKSNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMS 788
Y PS S T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1615 ---YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPS 1670
Query: 787 QETXXXXXXXXXXXXPANAPAYVTKTPSYPSSVPAMSPS 671
+P+Y +PSY + P+ SP+
Sbjct: 1671 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1709
>ref|NP_595673.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe
972h-] gi|548817|sp|P36594.1|RPB1_SCHPO RecName:
Full=DNA-directed RNA polymerase II subunit rpb1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit gi|256599715|pdb|3H0G|A Chain A, Rna
Polymerase Ii From Schizosaccharomyces Pombe
gi|256599727|pdb|3H0G|M Chain M, Rna Polymerase Ii From
Schizosaccharomyces Pombe gi|5055|emb|CAA39916.1| RNA
polymerase II large subunit [Schizosaccharomyces pombe]
gi|6018696|emb|CAB57941.1| RNA polymerase II large
subunit Rpb1 [Schizosaccharomyces pombe]
Length = 1752
Score = 60.5 bits (145), Expect = 1e-06
Identities = 42/152 (27%), Positives = 64/152 (42%)
Frame = -1
Query: 1126 PFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXXXXMYKSG 947
PF + MSP +T+P+ Y PS+P ++ Y
Sbjct: 1542 PFSSAMSPGYGLTSPS----YSPSSP--GYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPT 1595
Query: 946 VPSKSNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 767
PS S T+PSY + +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1596 SPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPS 1654
Query: 766 XXXXXXXXPANAPAYVTKTPSYPSSVPAMSPS 671
+P+Y +PSY + P+ SP+
Sbjct: 1655 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1686
Score = 58.2 bits (139), Expect = 7e-06
Identities = 46/160 (28%), Positives = 64/160 (40%), Gaps = 6/160 (3%)
Frame = -1
Query: 1132 MPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXX 971
MP +Y SPT +PT P P Y P++P S T
Sbjct: 1572 MPSSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPS----------- 1619
Query: 970 XXXMYKSGVPSKSNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSM 791
Y PS S T+PSY +PS + T+PSY P +P+ S +P+ P PS S
Sbjct: 1620 ----YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSP 1674
Query: 790 SQETXXXXXXXXXXXXPANAPAYVTKTPSYPSSVPAMSPS 671
S +P+Y +PSY + P+ SP+
Sbjct: 1675 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1714
>ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Brachypodium distachyon]
Length = 1862
Score = 60.1 bits (144), Expect = 2e-06
Identities = 41/146 (28%), Positives = 59/146 (40%)
Frame = -1
Query: 1108 SPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXXXXMYKSGVPSKSN 929
SP + +P+ Y PS+P+ S Y G PS S
Sbjct: 1537 SPVPSSYSPSSGGGYSPSSPVFSPGPGQGYSPTSPSYSPASPSYSPTSPSYTPGSPSYSP 1596
Query: 928 TAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXX 749
T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1597 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPVYSPTSP 1655
Query: 748 XXPANAPAYVTKTPSYPSSVPAMSPS 671
+PAY +PSY + P+ SP+
Sbjct: 1656 AYSPTSPAYSPTSPSYSPTSPSYSPT 1681
>dbj|BAJ78673.1| RNA polymerase II largest subunit [Bemisia tabaci]
Length = 1793
Score = 60.1 bits (144), Expect = 2e-06
Identities = 46/153 (30%), Positives = 62/153 (40%)
Frame = -1
Query: 1129 PPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXXXXMYKS 950
P NY SPT +PT P Y P++P S++ Y
Sbjct: 1600 PTSPNY-SPTSPSYSPTSPN-YSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSASPSYSP 1655
Query: 949 GVPSKSNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXX 770
PS S T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1656 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSP 1714
Query: 769 XXXXXXXXXPANAPAYVTKTPSYPSSVPAMSPS 671
+P+Y +PSY S P SPS
Sbjct: 1715 SYSPTSPSYTPTSPSYSPSSPSYSLSSPQYSPS 1747
Score = 58.9 bits (141), Expect = 4e-06
Identities = 48/166 (28%), Positives = 70/166 (42%), Gaps = 9/166 (5%)
Frame = -1
Query: 1129 PPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXX 968
P NY SPT +PT P P Y P++P S++
Sbjct: 1614 PTSPNY-SPTSPSYSPTSPSYSPTSPSYSPTSP--SYSASPSYSPTSPSYSPTSPSYSPT 1670
Query: 967 XXMYKSGVPSKSNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNK---PSSPQK 797
Y PS S T+PSY +PS + T+PSY P +P+ S +P+ P + P+SP
Sbjct: 1671 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYTPTSPSY 1730
Query: 796 SMSQETXXXXXXXXXXXXPANAPAYVTKTPSYPSSVPAMSPSDFPF 659
S S + PA+ P+Y +P Y + P+ SP+ F
Sbjct: 1731 SPSSPSYSLSSPQYSPSSPAS-PSYSPTSPKYSPTSPSYSPASPSF 1775
>gb|EPX72235.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces octosporus
yFS286]
Length = 1759
Score = 59.7 bits (143), Expect = 2e-06
Identities = 42/152 (27%), Positives = 63/152 (41%)
Frame = -1
Query: 1126 PFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXXXXMYKSG 947
PF + MSP +T+P+ Y PS+P ++ Y
Sbjct: 1542 PFSSAMSPGYGLTSPS----YSPSSP--GYSTSPTYMPSSPSYSPTSPSYSPTSPSYSPT 1595
Query: 946 VPSKSNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 767
PS S T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1596 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPS 1654
Query: 766 XXXXXXXXPANAPAYVTKTPSYPSSVPAMSPS 671
+P+Y +PSY + P+ SP+
Sbjct: 1655 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1686
>gb|EMT20712.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii]
Length = 1861
Score = 59.7 bits (143), Expect = 2e-06
Identities = 41/146 (28%), Positives = 59/146 (40%)
Frame = -1
Query: 1108 SPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXXXXMYKSGVPSKSN 929
SP + +P+ Y PS+P+ S Y G PS S
Sbjct: 1535 SPVPSNYSPSSGGGYSPSSPVFSPGPGHGYSPTSPSYSPASPSYSPTSPSYTPGSPSYSP 1594
Query: 928 TAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXX 749
T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1595 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPVYSPTSP 1653
Query: 748 XXPANAPAYVTKTPSYPSSVPAMSPS 671
+PAY +PSY + P+ SP+
Sbjct: 1654 AYSPTSPAYSPTSPSYSPTSPSYSPT 1679
>gb|EMS50869.1| DNA-directed RNA polymerase II subunit RPB1 [Triticum urartu]
Length = 2040
Score = 59.7 bits (143), Expect = 2e-06
Identities = 41/146 (28%), Positives = 59/146 (40%)
Frame = -1
Query: 1108 SPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXXXXMYKSGVPSKSN 929
SP + +P+ Y PS+P+ S Y G PS S
Sbjct: 1535 SPVPSNYSPSSGGGYSPSSPVFSPGPGHGYSPTSPSYSPASPSYSPTSPSYTPGSPSYSP 1594
Query: 928 TAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXX 749
T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1595 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPVYSPTSP 1653
Query: 748 XXPANAPAYVTKTPSYPSSVPAMSPS 671
+PAY +PSY + P+ SP+
Sbjct: 1654 AYSPTSPAYSPTSPSYSPTSPSYSPT 1679
>dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1859
Score = 59.7 bits (143), Expect = 2e-06
Identities = 41/146 (28%), Positives = 59/146 (40%)
Frame = -1
Query: 1108 SPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXXXXMYKSGVPSKSN 929
SP + +P+ Y PS+P+ S Y G PS S
Sbjct: 1535 SPVPSNYSPSSGGGYSPSSPVFSPGPGHGYSPTSPSYSPASPSYSPTSPSYTPGSPSYSP 1594
Query: 928 TAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXX 749
T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1595 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPVYSPTSP 1653
Query: 748 XXPANAPAYVTKTPSYPSSVPAMSPS 671
+PAY +PSY + P+ SP+
Sbjct: 1654 AYSPTSPAYSPTSPSYSPTSPSYSPT 1679
>dbj|BAJ78669.1| RNA polymerase II largest subunit [Thrips palmi]
Length = 1708
Score = 59.7 bits (143), Expect = 2e-06
Identities = 45/154 (29%), Positives = 64/154 (41%), Gaps = 2/154 (1%)
Frame = -1
Query: 1126 PFHNYMSPTKAVTAPTMP--PLYKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXXXXMYK 953
P ++ SP A T+P+M P Y P++P S T Y
Sbjct: 1562 PSYSPSSPAYAPTSPSMAASPNYSPTSPSYSPTSPNYSPTSPSYSPTSPS--------YS 1613
Query: 952 SGVPSKSNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXX 773
PS S T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1614 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTS 1672
Query: 772 XXXXXXXXXXPANAPAYVTKTPSYPSSVPAMSPS 671
+P+Y +PSY + P+ SPS
Sbjct: 1673 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPS 1706
>dbj|BAJ52637.1| RNA polymerase II largest subunit [Monosiga ovata]
Length = 1289
Score = 59.7 bits (143), Expect = 2e-06
Identities = 46/155 (29%), Positives = 61/155 (39%), Gaps = 6/155 (3%)
Frame = -1
Query: 1108 SPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXXXXMYKSG 947
SPT +PT P P Y P++P S T Y
Sbjct: 1149 SPTSPKYSPTSPSYSPTSPSYSPTSPSYSPTSPS----------------------YSPT 1186
Query: 946 VPSKSNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXX 767
PS S T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1187 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPS 1245
Query: 766 XXXXXXXXPANAPAYVTKTPSYPSSVPAMSPSDFP 662
++P Y +PSY S P+ SPS P
Sbjct: 1246 YSPTSPSYSPSSPNYSPSSPSYSPSSPSYSPSSGP 1280
Score = 58.5 bits (140), Expect = 5e-06
Identities = 43/148 (29%), Positives = 61/148 (41%)
Frame = -1
Query: 1114 YMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXXXXXXXXXXMYKSGVPSK 935
+MSPT +PT P Y P++P S T Y PS
Sbjct: 1105 HMSPTSPKYSPTSPS-YSPTSPSYSPTSPKYSPTSPSYSPTSPSYSPTSPK-YSPTSPSY 1162
Query: 934 SNTAPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXX 755
S T+PSY +PS + T+PSY P +P+ S +P+ P PS S S
Sbjct: 1163 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPT 1221
Query: 754 XXXXPANAPAYVTKTPSYPSSVPAMSPS 671
+P+Y +PSY + P+ SP+
Sbjct: 1222 SPSYSPTSPSYSPTSPSYSPTSPSYSPT 1249