BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00008174
         (632 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI27412.3| unnamed protein product [Vitis vinifera]              242   7e-62
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   242   7e-62
gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus pe...   236   3e-60
gb|EXB44918.1| DNA-directed RNA polymerase 1 [Morus notabilis]        235   9e-60
ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   235   9e-60
ref|XP_006660443.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   235   9e-60
dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa...   233   3e-59
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g...   233   3e-59
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo...   233   3e-59
ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Popu...   231   2e-58
ref|XP_002315996.2| DNA-directed RNA polymerase family protein [...   230   2e-58
ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays] gi|...   230   2e-58
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...   230   3e-58
tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]         230   3e-58
gb|EOY01555.1| DNA-directed RNA polymerase isoform 3 [Theobroma ...   229   4e-58
gb|EOY01553.1| DNA-directed RNA polymerase isoform 1 [Theobroma ...   229   4e-58
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...   228   8e-58
ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [S...   228   1e-57
emb|CAE52834.1| RNA polymerase [Hordeum vulgare]                      228   1e-57
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...   227   2e-57

>emb|CBI27412.3| unnamed protein product [Vitis vinifera]
          Length = 810

 Score =  242 bits (617), Expect = 7e-62
 Identities = 121/211 (57%), Positives = 153/211 (72%), Gaps = 3/211 (1%)
 Frame = +1

Query: 1   VVLAAMKVGEAVEHEVKVQRFLANSKKPKKTKNSE---IQVVTKPQEDASSVKEELLRQK 171
           VV AA  +GEA+EHEV++QRF+  +KK   + N+       VTK QE         LR+K
Sbjct: 79  VVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVTKEQEK--------LRKK 130

Query: 172 ITQLLKKNKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPP 351
           ++ L+KK K + VRQI+ + D +KPW      KVGS L++LLI+TA+IQPPADQ  +GPP
Sbjct: 131 VSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPP 190

Query: 352 EIRPAFKHVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKG 531
           +IRPAF H  KT + E  K TR+YGVIECD LV++GLE+TARH+VIPYMPMLV P  W G
Sbjct: 191 DIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTG 250

Query: 532 FDKGPYLFLPSYVMRIHGAKKQREALKRVSR 624
           +DKG YLFLPSYVMRIHGA++QREA+KR  R
Sbjct: 251 YDKGAYLFLPSYVMRIHGARQQREAIKRAPR 281


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
           vinifera]
          Length = 978

 Score =  242 bits (617), Expect = 7e-62
 Identities = 121/211 (57%), Positives = 153/211 (72%), Gaps = 3/211 (1%)
 Frame = +1

Query: 1   VVLAAMKVGEAVEHEVKVQRFLANSKKPKKTKNSE---IQVVTKPQEDASSVKEELLRQK 171
           VV AA  +GEA+EHEV++QRF+  +KK   + N+       VTK QE         LR+K
Sbjct: 247 VVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVTKEQEK--------LRKK 298

Query: 172 ITQLLKKNKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPP 351
           ++ L+KK K + VRQI+ + D +KPW      KVGS L++LLI+TA+IQPPADQ  +GPP
Sbjct: 299 VSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPP 358

Query: 352 EIRPAFKHVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKG 531
           +IRPAF H  KT + E  K TR+YGVIECD LV++GLE+TARH+VIPYMPMLV P  W G
Sbjct: 359 DIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTG 418

Query: 532 FDKGPYLFLPSYVMRIHGAKKQREALKRVSR 624
           +DKG YLFLPSYVMRIHGA++QREA+KR  R
Sbjct: 419 YDKGAYLFLPSYVMRIHGARQQREAIKRAPR 449


>gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score =  236 bits (603), Expect = 3e-60
 Identities = 117/210 (55%), Positives = 151/210 (71%)
 Frame = +1

Query: 1   VVLAAMKVGEAVEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEELLRQKITQ 180
           VV AA  +GEA+E EV++ +FL  ++K K  K+ E       + DA+  + E L +K+T 
Sbjct: 293 VVAAACTIGEAIEQEVRIHKFLEMTRKKKVDKDQE-----NGESDAAKKEREKLNKKVTN 347

Query: 181 LLKKNKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIR 360
           L+KK K K VR I++K+D +K W    +AKVGS L++LL QTAFIQPPADQ  +GPP+IR
Sbjct: 348 LMKKQKLKAVRGIVSKHDASKSWSLEARAKVGSRLIELLTQTAFIQPPADQLADGPPDIR 407

Query: 361 PAFKHVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDK 540
           PAF H F+T   +    +R+YGVIECD LV +GLE+TARH+VIPYMPMLV P  W G+DK
Sbjct: 408 PAFVHTFRTVAKDAKNASRRYGVIECDPLVLKGLEKTARHMVIPYMPMLVPPLNWTGYDK 467

Query: 541 GPYLFLPSYVMRIHGAKKQREALKRVSRNQ 630
           G Y FLPSYVMRIHGA++QREA+KR  R Q
Sbjct: 468 GGYFFLPSYVMRIHGARQQREAIKRTPREQ 497


>gb|EXB44918.1| DNA-directed RNA polymerase 1 [Morus notabilis]
          Length = 1023

 Score =  235 bits (599), Expect = 9e-60
 Identities = 117/209 (55%), Positives = 153/209 (73%), Gaps = 4/209 (1%)
 Frame = +1

Query: 1   VVLAAMKVGEAVEHEVKVQRFLANSKKPKKTKNSEIQ----VVTKPQEDASSVKEELLRQ 168
           VV AA ++GEA+EHEVK+QRF   +KK KK KN+  +    VV+  Q + +   +E LR+
Sbjct: 260 VVQAASQIGEALEHEVKIQRFFEKTKKKKKKKNTNGEDVSDVVSAEQGNLNGKGQEKLRK 319

Query: 169 KITQLLKKNKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGP 348
           K+TQ++KK K + VR I+++ D +KPW      KVG  L+ LL++TA+IQPP DQ  + P
Sbjct: 320 KVTQMIKKQKVQQVRIIVDRVDDSKPWGQEGHVKVGCRLIQLLMETAYIQPPVDQLDDSP 379

Query: 349 PEIRPAFKHVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWK 528
           P+IRPAF H  KT V +  K +R+YGVIECD LV++GLE+TARH+VIPYMPMLV  N W 
Sbjct: 380 PDIRPAFVHSLKTVVKDTRKTSRRYGVIECDPLVRRGLEKTARHMVIPYMPMLVPANKWT 439

Query: 529 GFDKGPYLFLPSYVMRIHGAKKQREALKR 615
           G+DKG YLFLPS VMR HGAK+QREA+KR
Sbjct: 440 GYDKGAYLFLPSQVMRTHGAKQQREAVKR 468


>ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
           isoform X2 [Oryza brachyantha]
          Length = 839

 Score =  235 bits (599), Expect = 9e-60
 Identities = 112/210 (53%), Positives = 156/210 (74%)
 Frame = +1

Query: 1   VVLAAMKVGEAVEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEELLRQKITQ 180
           V+ AA ++GEA+EHEV++ +FL   +KPKK ++ E+    +      + ++E LR+K+T 
Sbjct: 106 VIQAACQIGEAIEHEVRLHKFL---EKPKKKRSKEMDNEEEVGCSDIAKEQERLRKKVTD 162

Query: 181 LLKKNKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIR 360
           L+KK+K + VR I+ K D +KPW     AKVGS L++L+I+TA+IQPPA Q  +GPP+IR
Sbjct: 163 LMKKHKLRQVRYIVKKQDNSKPWGQDVHAKVGSRLIELMIETAYIQPPASQSADGPPDIR 222

Query: 361 PAFKHVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDK 540
           PAF H  +T   E+ K +R+YGVI+CD LV+QGL+RTA+H+VIPYMPML+ P  W G+DK
Sbjct: 223 PAFTHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDK 282

Query: 541 GPYLFLPSYVMRIHGAKKQREALKRVSRNQ 630
           G +LFLPSYVMR HGA++QREA+KR  R Q
Sbjct: 283 GAHLFLPSYVMRTHGARQQREAVKRAPREQ 312


>ref|XP_006660443.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
           isoform X1 [Oryza brachyantha]
          Length = 703

 Score =  235 bits (599), Expect = 9e-60
 Identities = 112/210 (53%), Positives = 156/210 (74%)
 Frame = +1

Query: 1   VVLAAMKVGEAVEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEELLRQKITQ 180
           V+ AA ++GEA+EHEV++ +FL   +KPKK ++ E+    +      + ++E LR+K+T 
Sbjct: 79  VIQAACQIGEAIEHEVRLHKFL---EKPKKKRSKEMDNEEEVGCSDIAKEQERLRKKVTD 135

Query: 181 LLKKNKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIR 360
           L+KK+K + VR I+ K D +KPW     AKVGS L++L+I+TA+IQPPA Q  +GPP+IR
Sbjct: 136 LMKKHKLRQVRYIVKKQDNSKPWGQDVHAKVGSRLIELMIETAYIQPPASQSADGPPDIR 195

Query: 361 PAFKHVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDK 540
           PAF H  +T   E+ K +R+YGVI+CD LV+QGL+RTA+H+VIPYMPML+ P  W G+DK
Sbjct: 196 PAFTHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDK 255

Query: 541 GPYLFLPSYVMRIHGAKKQREALKRVSRNQ 630
           G +LFLPSYVMR HGA++QREA+KR  R Q
Sbjct: 256 GAHLFLPSYVMRTHGARQQREAVKRAPREQ 285


>dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
           gi|48716846|dbj|BAD23544.1| putative phage-type RNA
           polymerase [Oryza sativa Japonica Group]
           gi|215694941|dbj|BAG90132.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 951

 Score =  233 bits (595), Expect = 3e-59
 Identities = 110/210 (52%), Positives = 154/210 (73%)
 Frame = +1

Query: 1   VVLAAMKVGEAVEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEELLRQKITQ 180
           V+ AA ++GEA+EHEV++ +FL   +K KK  N E+    +  +   + ++E LR+K+T 
Sbjct: 284 VIQAACQIGEAIEHEVRIHKFL---EKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTD 340

Query: 181 LLKKNKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIR 360
           L+KK K + VR I+ K D +KPW     AKVGS L++L+I+TA+IQPPA Q  +GPP+IR
Sbjct: 341 LMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIR 400

Query: 361 PAFKHVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDK 540
           PAF H  +T   E+ K +R+YGVI+CD LV+QGL+RTA+H+VIPYMPML+ P  W G+DK
Sbjct: 401 PAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDK 460

Query: 541 GPYLFLPSYVMRIHGAKKQREALKRVSRNQ 630
           G +LFLPSYVMR HGA++QR+A++R  R Q
Sbjct: 461 GAHLFLPSYVMRTHGARQQRDAVRRAPREQ 490


>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
           gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
           Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
           single subunit RNA polymerase [Oryza sativa Japonica
           Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
           sativa Japonica Group]
          Length = 1017

 Score =  233 bits (595), Expect = 3e-59
 Identities = 110/210 (52%), Positives = 154/210 (73%)
 Frame = +1

Query: 1   VVLAAMKVGEAVEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEELLRQKITQ 180
           V+ AA ++GEA+EHEV++ +FL   +K KK  N E+    +  +   + ++E LR+K+T 
Sbjct: 284 VIQAACQIGEAIEHEVRIHKFL---EKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTD 340

Query: 181 LLKKNKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIR 360
           L+KK K + VR I+ K D +KPW     AKVGS L++L+I+TA+IQPPA Q  +GPP+IR
Sbjct: 341 LMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIR 400

Query: 361 PAFKHVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDK 540
           PAF H  +T   E+ K +R+YGVI+CD LV+QGL+RTA+H+VIPYMPML+ P  W G+DK
Sbjct: 401 PAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDK 460

Query: 541 GPYLFLPSYVMRIHGAKKQREALKRVSRNQ 630
           G +LFLPSYVMR HGA++QR+A++R  R Q
Sbjct: 461 GAHLFLPSYVMRTHGARQQRDAVRRAPREQ 490


>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
          Length = 983

 Score =  233 bits (595), Expect = 3e-59
 Identities = 110/210 (52%), Positives = 154/210 (73%)
 Frame = +1

Query: 1   VVLAAMKVGEAVEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEELLRQKITQ 180
           V+ AA ++GEA+EHEV++ +FL   +K KK  N E+    +  +   + ++E LR+K+T 
Sbjct: 250 VIQAACQIGEAIEHEVRIHKFL---EKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTD 306

Query: 181 LLKKNKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIR 360
           L+KK K + VR I+ K D +KPW     AKVGS L++L+I+TA+IQPPA Q  +GPP+IR
Sbjct: 307 LMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIR 366

Query: 361 PAFKHVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDK 540
           PAF H  +T   E+ K +R+YGVI+CD LV+QGL+RTA+H+VIPYMPML+ P  W G+DK
Sbjct: 367 PAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDK 426

Query: 541 GPYLFLPSYVMRIHGAKKQREALKRVSRNQ 630
           G +LFLPSYVMR HGA++QR+A++R  R Q
Sbjct: 427 GAHLFLPSYVMRTHGARQQRDAVRRAPREQ 456


>ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa]
           gi|550332836|gb|EEE88785.2| hypothetical protein
           POPTR_0008s11200g [Populus trichocarpa]
          Length = 988

 Score =  231 bits (588), Expect = 2e-58
 Identities = 116/217 (53%), Positives = 159/217 (73%), Gaps = 7/217 (3%)
 Frame = +1

Query: 1   VVLAAMKVGEAVEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDAS-------SVKEEL 159
           VV AA  VGEA+EHE ++ +FL   +K KK KN E ++ ++ + DA+       S ++E 
Sbjct: 249 VVQAASVVGEAIEHEGRIHKFL---EKTKKRKNVEAKI-SEGESDAAIEEGEKLSKEQEK 304

Query: 160 LRQKITQLLKKNKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCM 339
           LR+K+T L+KK K + VR+I+  +D ++PW      KVGS L+ L+I+TA+IQPP DQ  
Sbjct: 305 LRKKVTTLIKKQKVQQVRRIVKGHDDSRPWGQEEHVKVGSRLIQLMIETAYIQPPIDQIG 364

Query: 340 EGPPEIRPAFKHVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPN 519
           +GPP+IRPAF H  KT   +  K +R+YGVIECD LV++GLE++ARH+VIPYMPMLV P 
Sbjct: 365 DGPPDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPL 424

Query: 520 PWKGFDKGPYLFLPSYVMRIHGAKKQREALKRVSRNQ 630
            W G+D+G +LFLPSYVMRIHG+K+QR+A+KR SRNQ
Sbjct: 425 NWTGYDQGAHLFLPSYVMRIHGSKQQRDAVKRASRNQ 461


>ref|XP_002315996.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
           gi|550329816|gb|EEF02167.2| DNA-directed RNA polymerase
           family protein [Populus trichocarpa]
          Length = 862

 Score =  230 bits (587), Expect = 2e-58
 Identities = 119/213 (55%), Positives = 150/213 (70%), Gaps = 3/213 (1%)
 Frame = +1

Query: 1   VVLAAMKVGEAVEHEVKVQRFLANSKKPK--KTKNSEIQVVTKPQEDASSVKE-ELLRQK 171
           VV AA  VGEA+E+E K+ +FL  +KK K  K K SE + V    E     KE E LR+K
Sbjct: 123 VVQAASVVGEAIENEAKIHKFLEKTKKRKNLKEKISEGESVAAIYEGEKLTKEQEKLRKK 182

Query: 172 ITQLLKKNKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPP 351
           +T L+KK K   VR+I+  +D + PW      KVGS L+ L+I+TA+IQPP DQ  +GPP
Sbjct: 183 VTTLMKKQKVHQVRRIVKGHDDSMPWGQEAHLKVGSRLIQLMIETAYIQPPIDQIGDGPP 242

Query: 352 EIRPAFKHVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKG 531
           +IRPAF H  KT   +  K +R+YGVIECD LV++GLE++ARH+VIPYMPMLV P  W G
Sbjct: 243 DIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWTG 302

Query: 532 FDKGPYLFLPSYVMRIHGAKKQREALKRVSRNQ 630
           +D+G Y FLPSYVMRIHGAK+QR A+KR SRNQ
Sbjct: 303 YDQGAYFFLPSYVMRIHGAKQQRVAIKRASRNQ 335


>ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays]
           gi|4559304|gb|AAD22976.1|AF127021_1 T7-like RNA
           polymerase [Zea mays]
          Length = 975

 Score =  230 bits (587), Expect = 2e-58
 Identities = 110/210 (52%), Positives = 153/210 (72%)
 Frame = +1

Query: 1   VVLAAMKVGEAVEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEELLRQKITQ 180
           V+ AA ++GEA+EHEV++ RFL   +K +K  N E++   +  +   +V+++ LR+K+T 
Sbjct: 242 VIQAACQIGEAIEHEVRINRFL---EKTRKKNNKEMENEEEAGDTNIAVEQQRLRKKVTD 298

Query: 181 LLKKNKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIR 360
           L+KK K + VR I+   D ++PW     AKVGS L+DL I TA IQPPA Q  +G P+IR
Sbjct: 299 LMKKQKLRQVRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQSSDGLPDIR 358

Query: 361 PAFKHVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDK 540
           PAF+H  +T V E+ K +R+YGVI+CD LV+QGL+RTA+H+VIPYMPML+ P  W G+DK
Sbjct: 359 PAFRHEMRTMVKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDK 418

Query: 541 GPYLFLPSYVMRIHGAKKQREALKRVSRNQ 630
           G +LFLPSYVMR HGA++QR+A+KR  R Q
Sbjct: 419 GAHLFLPSYVMRTHGARQQRDAVKRAPREQ 448


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
           AltName: Full=T7 bacteriophage-type single subunit RNA
           polymerase 2; Flags: Precursor
           gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score =  230 bits (586), Expect = 3e-58
 Identities = 115/212 (54%), Positives = 152/212 (71%), Gaps = 2/212 (0%)
 Frame = +1

Query: 1   VVLAAMKVGEAVEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSV--KEELLRQKI 174
           VV AA+ +G+A+E EV++  FL  +KK K  K+       K +ED   V  ++E LR+K+
Sbjct: 289 VVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKD-------KQKEDGEHVTQEQEKLRKKV 341

Query: 175 TQLLKKNKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPE 354
           T L+KK K + V QI+ + D +KPW    +AKVGS L+DLL+QTA+IQPPA+Q    PP+
Sbjct: 342 TNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPD 401

Query: 355 IRPAFKHVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGF 534
           IRPAF H  +T   E    +R+YG+I+CD LV +GLERTARH+VIPYMPMLV P  W G+
Sbjct: 402 IRPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGY 461

Query: 535 DKGPYLFLPSYVMRIHGAKKQREALKRVSRNQ 630
           DKG +L+LPSYVMR HGA++QREA+KR SRNQ
Sbjct: 462 DKGGHLYLPSYVMRTHGARQQREAVKRASRNQ 493


>tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]
          Length = 975

 Score =  230 bits (586), Expect = 3e-58
 Identities = 109/210 (51%), Positives = 153/210 (72%)
 Frame = +1

Query: 1   VVLAAMKVGEAVEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEELLRQKITQ 180
           V+ AA ++GEA+EHEV++ RFL   +K +K  N E++   +  +   +++++ LR+K+T 
Sbjct: 242 VIQAACQIGEAIEHEVRINRFL---EKTRKKNNKEMENEEEAGDTNIAIEQQRLRKKVTD 298

Query: 181 LLKKNKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIR 360
           L+KK K + VR I+   D ++PW     AKVGS L+DL I TA IQPPA Q  +G P+IR
Sbjct: 299 LMKKQKLRQVRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQSSDGLPDIR 358

Query: 361 PAFKHVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDK 540
           PAF+H  +T V E+ K +R+YGVI+CD LV+QGL+RTA+H+VIPYMPML+ P  W G+DK
Sbjct: 359 PAFRHEMRTMVKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDK 418

Query: 541 GPYLFLPSYVMRIHGAKKQREALKRVSRNQ 630
           G +LFLPSYVMR HGA++QR+A+KR  R Q
Sbjct: 419 GAHLFLPSYVMRTHGARQQRDAVKRAPREQ 448


>gb|EOY01555.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
          Length = 932

 Score =  229 bits (585), Expect = 4e-58
 Identities = 117/213 (54%), Positives = 149/213 (69%), Gaps = 3/213 (1%)
 Frame = +1

Query: 1   VVLAAMKVGEAVEHEVKVQRFLANSKKPKKTK---NSEIQVVTKPQEDASSVKEELLRQK 171
           VV AA ++GEA+EHE K+Q FL  +KK K T    + E + VT  QE     +E+L R+K
Sbjct: 258 VVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDKKPDGESEPVTNKQEKLVKDQEKL-RKK 316

Query: 172 ITQLLKKNKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPP 351
           +TQLLKK K   VR+I+  +D +K W      KVG  L+ LLI+ A+IQPP DQ  + PP
Sbjct: 317 VTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKVGCRLIQLLIENAYIQPPVDQLGDCPP 376

Query: 352 EIRPAFKHVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKG 531
           +IRPAF H  KT   + +K +R+YGVIECD LV++GLE+TARH+VIPYMPMLV P  W G
Sbjct: 377 DIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEKTARHMVIPYMPMLVPPQNWTG 436

Query: 532 FDKGPYLFLPSYVMRIHGAKKQREALKRVSRNQ 630
           +D+G YLFLPSYVMR HGAK+QRE +KR  R Q
Sbjct: 437 YDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQ 469


>gb|EOY01553.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
           gi|508709657|gb|EOY01554.1| DNA-directed RNA polymerase
           isoform 1 [Theobroma cacao]
          Length = 996

 Score =  229 bits (585), Expect = 4e-58
 Identities = 117/213 (54%), Positives = 149/213 (69%), Gaps = 3/213 (1%)
 Frame = +1

Query: 1   VVLAAMKVGEAVEHEVKVQRFLANSKKPKKTK---NSEIQVVTKPQEDASSVKEELLRQK 171
           VV AA ++GEA+EHE K+Q FL  +KK K T    + E + VT  QE     +E+L R+K
Sbjct: 258 VVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDKKPDGESEPVTNKQEKLVKDQEKL-RKK 316

Query: 172 ITQLLKKNKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPP 351
           +TQLLKK K   VR+I+  +D +K W      KVG  L+ LLI+ A+IQPP DQ  + PP
Sbjct: 317 VTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKVGCRLIQLLIENAYIQPPVDQLGDCPP 376

Query: 352 EIRPAFKHVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKG 531
           +IRPAF H  KT   + +K +R+YGVIECD LV++GLE+TARH+VIPYMPMLV P  W G
Sbjct: 377 DIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEKTARHMVIPYMPMLVPPQNWTG 436

Query: 532 FDKGPYLFLPSYVMRIHGAKKQREALKRVSRNQ 630
           +D+G YLFLPSYVMR HGAK+QRE +KR  R Q
Sbjct: 437 YDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQ 469


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial; AltName:
           Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
           single subunit RNA polymerase 2B; Flags: Precursor
           gi|21425665|emb|CAC95020.1| mitochondrial and
           chloroplast RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score =  228 bits (582), Expect = 8e-58
 Identities = 114/212 (53%), Positives = 152/212 (71%), Gaps = 2/212 (0%)
 Frame = +1

Query: 1   VVLAAMKVGEAVEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSV--KEELLRQKI 174
           VV AA+ +G+A+E EV++  FL  +KK K  K+       K +ED   V  ++E LR+K+
Sbjct: 290 VVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKD-------KQKEDGEHVTQEQEKLRKKV 342

Query: 175 TQLLKKNKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPE 354
           T L+KK K + V QI+ + D +KPW    +AKVGS L++LL+QTA+IQPPA+Q    PP+
Sbjct: 343 TNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPD 402

Query: 355 IRPAFKHVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGF 534
           IRPAF H  +T   E    +R+YG+I+CD LV +GLERTARH+VIPYMPMLV P  W G+
Sbjct: 403 IRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGY 462

Query: 535 DKGPYLFLPSYVMRIHGAKKQREALKRVSRNQ 630
           DKG +L+LPSYVMR HGA++QREA+KR SRNQ
Sbjct: 463 DKGGHLYLPSYVMRTHGARQQREAVKRASRNQ 494


>ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
           gi|241924412|gb|EER97556.1| hypothetical protein
           SORBIDRAFT_02g039520 [Sorghum bicolor]
          Length = 976

 Score =  228 bits (581), Expect = 1e-57
 Identities = 111/211 (52%), Positives = 151/211 (71%), Gaps = 1/211 (0%)
 Frame = +1

Query: 1   VVLAAMKVGEAVEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEEL-LRQKIT 177
           V+ AA ++GEA+EHEV++ RFL   +K +K  N E++   +   D    KE+  LR+K+T
Sbjct: 242 VIQAACQIGEAIEHEVRINRFL---EKTRKKSNKEMEKEEEAAGDTDIAKEQQRLRKKVT 298

Query: 178 QLLKKNKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEI 357
            L+KK K + VR I+   D ++PW    QAKVGS L++L + TA IQPPA Q  +G P+I
Sbjct: 299 DLMKKQKLRQVRNIVKNQDNSRPWGQDVQAKVGSRLIELFMDTAHIQPPASQSSDGLPDI 358

Query: 358 RPAFKHVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFD 537
           RPAF+H  +T   E+ K +R+YGVI+CD LV+QGL+RTA+H+VIPYMPML+ P  W G+D
Sbjct: 359 RPAFRHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYD 418

Query: 538 KGPYLFLPSYVMRIHGAKKQREALKRVSRNQ 630
           KG +LFLPSYVMR HGA++QREA+KR  R Q
Sbjct: 419 KGAHLFLPSYVMRTHGARQQREAVKRAPREQ 449


>emb|CAE52834.1| RNA polymerase [Hordeum vulgare]
          Length = 862

 Score =  228 bits (581), Expect = 1e-57
 Identities = 112/210 (53%), Positives = 154/210 (73%)
 Frame = +1

Query: 1   VVLAAMKVGEAVEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEELLRQKITQ 180
           V+ AA ++GEAVEHEV++ +FL  +KK K TK  E+  V +P +   + +++LLR+K+T 
Sbjct: 131 VIQAACQIGEAVEHEVRIHKFLEKTKK-KNTK--EVDKVVEPGDSDIAKEQQLLRKKVTD 187

Query: 181 LLKKNKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIR 360
           L+KK K + VR ++ K D T+PW     AKVGS L++L I+TA IQPPA Q  +  PEIR
Sbjct: 188 LMKKQKIRQVRHLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSGDSTPEIR 247

Query: 361 PAFKHVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDK 540
           PAF H  +T    R +K+R+YGVI+CD LV+QGL+RTA+H+VIPYMPML+ P  W G+DK
Sbjct: 248 PAFTHEMRTVA--REQKSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDK 305

Query: 541 GPYLFLPSYVMRIHGAKKQREALKRVSRNQ 630
           G +LFLPSYVMR HGA++QREA+K+  + Q
Sbjct: 306 GAHLFLPSYVMRTHGARQQREAVKKAPKEQ 335


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
           sylvestris] gi|17221595|dbj|BAB78465.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score =  227 bits (579), Expect = 2e-57
 Identities = 114/212 (53%), Positives = 151/212 (71%), Gaps = 2/212 (0%)
 Frame = +1

Query: 1   VVLAAMKVGEAVEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSV--KEELLRQKI 174
           VV AA+ +G+A+E EV++  FL  +KK K  K+       K +ED   V  ++E LR+K+
Sbjct: 289 VVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKD-------KQKEDGEHVTQEQEKLRKKV 341

Query: 175 TQLLKKNKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPE 354
           T L+KK K + V QI+ + D +KPW    +AKVGS L+DLL+QTA+IQPPA+Q    PP+
Sbjct: 342 TNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPD 401

Query: 355 IRPAFKHVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGF 534
           I PAF H  +T   E    +R+YG+I+CD LV +GLERTARH+VIPYMPMLV P  W G+
Sbjct: 402 IPPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGY 461

Query: 535 DKGPYLFLPSYVMRIHGAKKQREALKRVSRNQ 630
           DKG +L+LPSYVMR HGA++QREA+KR SRNQ
Sbjct: 462 DKGGHLYLPSYVMRTHGARQQREAVKRASRNQ 493