BLASTX nr result
ID: Ephedra26_contig00007894
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00007894
(1285 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_001751839.1| predicted protein [Physcomitrella patens] gi... 283 1e-73
ref|XP_002988954.1| hypothetical protein SELMODRAFT_128885 [Sela... 280 7e-73
ref|XP_002271507.2| PREDICTED: DNA-directed RNA polymerase III s... 242 3e-61
ref|XP_002281971.1| PREDICTED: DNA-directed RNA polymerase III s... 241 6e-61
gb|EOX94571.1| RNA polymerase Rpb7 N-terminal domain-containing ... 229 2e-57
ref|XP_006305915.1| hypothetical protein CARUB_v10011131mg [Caps... 229 2e-57
ref|XP_003563135.1| PREDICTED: DNA-directed RNA polymerase III s... 228 3e-57
ref|XP_006479590.1| PREDICTED: DNA-directed RNA polymerase III s... 228 5e-57
ref|XP_004515171.1| PREDICTED: DNA-directed RNA polymerase III s... 227 7e-57
ref|XP_004514743.1| PREDICTED: DNA-directed RNA polymerase III s... 226 2e-56
gb|EEE67155.1| hypothetical protein OsJ_24224 [Oryza sativa Japo... 226 2e-56
ref|NP_001059628.1| Os07g0477000 [Oryza sativa Japonica Group] g... 225 3e-56
ref|XP_002520987.1| DNA-directed RNA polymerase III 25 kD polype... 225 3e-56
gb|EXB26576.1| DNA-directed RNA polymerase III subunit rpc8 [Mor... 224 5e-56
dbj|BAK08181.1| predicted protein [Hordeum vulgare subsp. vulgare] 224 5e-56
ref|XP_006657688.1| PREDICTED: DNA-directed RNA polymerase III s... 223 1e-55
ref|XP_002889618.1| predicted protein [Arabidopsis lyrata subsp.... 223 1e-55
ref|XP_003580811.1| PREDICTED: DNA-directed RNA polymerase III s... 221 7e-55
ref|NP_172164.1| RNA polymerase Rpb7 N-terminal domain-containin... 219 3e-54
gb|EMT04694.1| DNA-directed RNA polymerase III subunit RPC8 [Aeg... 216 2e-53
>ref|XP_001751839.1| predicted protein [Physcomitrella patens] gi|162696937|gb|EDQ83274.1|
predicted protein [Physcomitrella patens]
Length = 189
Score = 283 bits (723), Expect = 1e-73
Identities = 129/189 (68%), Positives = 157/189 (83%), Gaps = 1/189 (0%)
Frame = -3
Query: 1124 MFFISELEHTIRVPPQLLDIPLPDAIKLELRKLFLDKVIKDLGLCVTLYDIQSIEGGFVF 945
MF ++EL+ T++VPPQ L + L DAI EL L+ DKV+KDLGLCVTLYDI +EGG VF
Sbjct: 1 MFMLAELQDTLKVPPQSLSLALQDAITQELANLYFDKVLKDLGLCVTLYDISKVEGGSVF 60
Query: 944 AGDGAPTYTVSFRLVMFRPFIGEVLVGKLKKSDKSGLYLSLG-FFDDIHVPEHLLPEPTN 768
GDGAP +TV FRLVMFRPF+GEVL+ KLK+ DK+GLYLSLG FF+DIH+PEHLL +P+
Sbjct: 61 PGDGAPHFTVDFRLVMFRPFVGEVLIAKLKRCDKAGLYLSLGSFFEDIHIPEHLLQQPSK 120
Query: 767 FVESESLWLWNYEGAELFMDLDEDVRFRVSQIKYPPIPIEQDNDAKPFAPMEIIGDISAS 588
F E E LW+WNY GA++FMDL+EDVRFRV Q+KYPPIPIEQ+ DA+PFAPM I GDI+A
Sbjct: 121 FDEEEKLWIWNYNGADMFMDLEEDVRFRVVQVKYPPIPIEQEKDARPFAPMAITGDINAD 180
Query: 587 GLGLTSWWA 561
GLGL +WW+
Sbjct: 181 GLGLVAWWS 189
>ref|XP_002988954.1| hypothetical protein SELMODRAFT_128885 [Selaginella moellendorffii]
gi|300143291|gb|EFJ09983.1| hypothetical protein
SELMODRAFT_128885 [Selaginella moellendorffii]
Length = 187
Score = 280 bits (717), Expect = 7e-73
Identities = 128/187 (68%), Positives = 159/187 (85%)
Frame = -3
Query: 1124 MFFISELEHTIRVPPQLLDIPLPDAIKLELRKLFLDKVIKDLGLCVTLYDIQSIEGGFVF 945
MF +S+L T+R+PP L +PL DAI LE+ +LFLDKV+KDLGLCV+LYDIQSIEGGFVF
Sbjct: 1 MFVLSKLRDTLRIPPANLVLPLLDAITLEIHRLFLDKVVKDLGLCVSLYDIQSIEGGFVF 60
Query: 944 AGDGAPTYTVSFRLVMFRPFIGEVLVGKLKKSDKSGLYLSLGFFDDIHVPEHLLPEPTNF 765
GDGAPTYTV F+LVMFRPF GE+LV KLKK DK+GL LS+GFF+DI VP H L +P+ F
Sbjct: 61 PGDGAPTYTVEFQLVMFRPFPGEILVAKLKKCDKNGLVLSMGFFEDIIVPHHQLQQPSKF 120
Query: 764 VESESLWLWNYEGAELFMDLDEDVRFRVSQIKYPPIPIEQDNDAKPFAPMEIIGDISASG 585
E+E LW+WNY+ E+FMDL+E+VRFRV +++YPPIP+EQ+ DA+PFAPME+IGDI++ G
Sbjct: 121 DENEKLWVWNYQENEMFMDLEEEVRFRVLKVRYPPIPLEQERDAQPFAPMEVIGDINSDG 180
Query: 584 LGLTSWW 564
LGL SWW
Sbjct: 181 LGLVSWW 187
>ref|XP_002271507.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Vitis
vinifera] gi|296086693|emb|CBI32328.3| unnamed protein
product [Vitis vinifera]
Length = 192
Score = 242 bits (617), Expect = 3e-61
Identities = 110/192 (57%), Positives = 149/192 (77%), Gaps = 5/192 (2%)
Frame = -3
Query: 1124 MFFISELEHTIRVPPQLLDIPLPDAIKLELRKLFLDKVIKDLGLCVTLYDIQSIEGGFVF 945
MFF+S +EHT+R+PP LLD+PL +AIK EL LFLDKV+ +LGLC+++YDI+SI+GGFVF
Sbjct: 1 MFFLSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVLANLGLCISVYDIRSIDGGFVF 60
Query: 944 AGDGAPTYTVSFRLVMFRPFIGEVLVGKLKKSDKSGLYLSLGFFDDIHVPEHLLP----- 780
GDGA TYTV FRLVMFRPF+GE++ KLK+SD +GL LSLGFFDDI++P HL+P
Sbjct: 61 PGDGASTYTVEFRLVMFRPFVGEIITAKLKESDANGLQLSLGFFDDIYIPVHLMPNPCHC 120
Query: 779 EPTNFVESESLWLWNYEGAELFMDLDEDVRFRVSQIKYPPIPIEQDNDAKPFAPMEIIGD 600
EP +S+ +W+W+Y+ + +D +++RF+V + YPPIP+EQ ++KPFAPM I+G
Sbjct: 121 EPDPENKSQVIWIWDYQEQKFPIDGLDEIRFQVQSVSYPPIPVEQPKESKPFAPMMIMGS 180
Query: 599 ISASGLGLTSWW 564
+ GLG SWW
Sbjct: 181 LDYDGLGPVSWW 192
>ref|XP_002281971.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Vitis
vinifera] gi|297735498|emb|CBI17938.3| unnamed protein
product [Vitis vinifera]
Length = 192
Score = 241 bits (614), Expect = 6e-61
Identities = 109/192 (56%), Positives = 148/192 (77%), Gaps = 5/192 (2%)
Frame = -3
Query: 1124 MFFISELEHTIRVPPQLLDIPLPDAIKLELRKLFLDKVIKDLGLCVTLYDIQSIEGGFVF 945
MF++S +EHT+R+PP LLD+PL +AIK EL LFLDKVI +LGLC+++YDI+SI+GGFVF
Sbjct: 1 MFYLSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVIANLGLCISVYDIRSIDGGFVF 60
Query: 944 AGDGAPTYTVSFRLVMFRPFIGEVLVGKLKKSDKSGLYLSLGFFDDIHVPEHLLP----- 780
GDGA TYTV FRLVMFRPF+GE++ KLK+SD +GL LSLGFFDDI++P HL+P
Sbjct: 61 PGDGASTYTVEFRLVMFRPFVGEIITAKLKESDANGLRLSLGFFDDIYIPVHLMPNPCHC 120
Query: 779 EPTNFVESESLWLWNYEGAELFMDLDEDVRFRVSQIKYPPIPIEQDNDAKPFAPMEIIGD 600
EP + + +W+W+Y+ + +D +++RF+V + YPPIP+EQ ++KPFAPM I+G
Sbjct: 121 EPNPEKKGQVIWIWDYQEQKFPIDGIDEIRFQVQSVSYPPIPVEQPKESKPFAPMVIMGS 180
Query: 599 ISASGLGLTSWW 564
+ GLG SWW
Sbjct: 181 LDYDGLGPVSWW 192
>gb|EOX94571.1| RNA polymerase Rpb7 N-terminal domain-containing protein [Theobroma
cacao]
Length = 210
Score = 229 bits (583), Expect = 2e-57
Identities = 107/200 (53%), Positives = 147/200 (73%), Gaps = 13/200 (6%)
Frame = -3
Query: 1124 MFFISELEHTIRVPPQLLDIPLPDAIKLELRKLFLDKVIKDLGLCVTLYDIQSIEGGFVF 945
MF++S +EHT+R+PP LL++PL +AIK+EL LFLDKVI +LGLC+++YDI+SI+GGF++
Sbjct: 1 MFYLSLIEHTLRLPPHLLNLPLDEAIKIELEALFLDKVIANLGLCISVYDIRSIKGGFIY 60
Query: 944 AGDGAPTYTVSFRLVMFRPFIGEVLVGKLKKSDKSGLYLSLGFFDDIHVPEHLLPEPTNF 765
GDGA TYTV FRL++FRPF+GE++V KLK+SD +GL LSLGFFDDI++P HLLP P+ F
Sbjct: 61 PGDGASTYTVEFRLIVFRPFVGEIIVAKLKESDANGLRLSLGFFDDIYIPVHLLPIPSRF 120
Query: 764 V-----ESESLWLWNYEGAE--------LFMDLDEDVRFRVSQIKYPPIPIEQDNDAKPF 624
++ W+W++ AE +D + ++FRV + YP IP+EQ ++KPF
Sbjct: 121 ESDPNNRNQGRWIWDFGEAEEAQSEEPRFVIDGMDQIKFRVHSVIYPSIPLEQPENSKPF 180
Query: 623 APMEIIGDISASGLGLTSWW 564
APM I G I GLG SWW
Sbjct: 181 APMVITGSIDYDGLGPVSWW 200
>ref|XP_006305915.1| hypothetical protein CARUB_v10011131mg [Capsella rubella]
gi|482574626|gb|EOA38813.1| hypothetical protein
CARUB_v10011131mg [Capsella rubella]
Length = 199
Score = 229 bits (583), Expect = 2e-57
Identities = 109/192 (56%), Positives = 141/192 (73%), Gaps = 5/192 (2%)
Frame = -3
Query: 1124 MFFISELEHTIRVPPQLLDIPLPDAIKLELRKLFLDKVIKDLGLCVTLYDIQSIEGGFVF 945
MF++SELEH++RVPP LL++PL DAIK L+ +FLDKV+ DLGLCV++YDI+SIEGG V
Sbjct: 1 MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLVDLGLCVSVYDIKSIEGGIVL 60
Query: 944 AGDGAPTYTVSFRLVMFRPFIGEVLVGKLKKSDKSGLYLSLGFFDDIHVPEHLLP----- 780
GDGA TY V FR+V+FRPF+GEV+ K K+SD +GL L+LGFF+DI+VP L+P
Sbjct: 61 PGDGAATYKVVFRIVVFRPFVGEVIAAKFKESDTNGLRLTLGFFEDIYVPVPLIPTPNRC 120
Query: 779 EPTNFVESESLWLWNYEGAELFMDLDEDVRFRVSQIKYPPIPIEQDNDAKPFAPMEIIGD 600
EP + + W+W +EG E +D ++FRV I YP +PIE+ DAKPFAPM I G+
Sbjct: 121 EPDPYNRKQMRWVWVFEGQEYIIDDSCQIKFRVEGISYPSVPIERAEDAKPFAPMVITGN 180
Query: 599 ISASGLGLTSWW 564
I GLGL SWW
Sbjct: 181 IDDDGLGLVSWW 192
>ref|XP_003563135.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Brachypodium distachyon]
Length = 200
Score = 228 bits (582), Expect = 3e-57
Identities = 110/188 (58%), Positives = 139/188 (73%)
Frame = -3
Query: 1124 MFFISELEHTIRVPPQLLDIPLPDAIKLELRKLFLDKVIKDLGLCVTLYDIQSIEGGFVF 945
MF +S++EH + +PP LL PL DAIK EL +LFLDKVI +LGLCV++YDI ++EGGF+F
Sbjct: 1 MFVLSQIEHNLPMPPHLLSRPLVDAIKTELERLFLDKVITNLGLCVSVYDILAVEGGFIF 60
Query: 944 AGDGAPTYTVSFRLVMFRPFIGEVLVGKLKKSDKSGLYLSLGFFDDIHVPEHLLPEPTNF 765
G+G TY VSFRL+MFRPFIGEVLVGK+ D+ GL +SL FF DI +P HL+ T
Sbjct: 61 PGEGCSTYKVSFRLLMFRPFIGEVLVGKISGYDEKGLQVSLDFFSDICIPGHLMQYGTVR 120
Query: 764 VESESLWLWNYEGAELFMDLDEDVRFRVSQIKYPPIPIEQDNDAKPFAPMEIIGDISASG 585
E L +G EL++D+D+++RF VS IKYPPIP+EQ D KPFAPM+IIG I G
Sbjct: 121 GEDGRWMLKTDDGDELYLDIDDEIRFLVSGIKYPPIPVEQKEDDKPFAPMQIIGSIKGDG 180
Query: 584 LGLTSWWA 561
LGL +WWA
Sbjct: 181 LGLLAWWA 188
>ref|XP_006479590.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like isoform
X1 [Citrus sinensis] gi|568851835|ref|XP_006479591.1|
PREDICTED: DNA-directed RNA polymerase III subunit
RPC8-like isoform X2 [Citrus sinensis]
Length = 192
Score = 228 bits (580), Expect = 5e-57
Identities = 106/192 (55%), Positives = 142/192 (73%), Gaps = 5/192 (2%)
Frame = -3
Query: 1124 MFFISELEHTIRVPPQLLDIPLPDAIKLELRKLFLDKVIKDLGLCVTLYDIQSIEGGFVF 945
MF++S++EHT+R+PP LL +PL +AIKLEL +FLDKVI +LGLC+++YDI+ IEGGFV+
Sbjct: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
Query: 944 AGDGAPTYTVSFRLVMFRPFIGEVLVGKLKKSDKSGLYLSLGFFDDIHVPEHLLP----- 780
G+GA T+TV FRLV+FRPF+GE++ KLK+SD +GL LSLGFF+DI+VP HLLP
Sbjct: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
Query: 779 EPTNFVESESLWLWNYEGAELFMDLDEDVRFRVSQIKYPPIPIEQDNDAKPFAPMEIIGD 600
EP + E W+W + + +D ++++FRV + YP IPIEQ +KPFAPM I G
Sbjct: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
Query: 599 ISASGLGLTSWW 564
I GLG SWW
Sbjct: 181 IDYDGLGPVSWW 192
>ref|XP_004515171.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like isoform
X1 [Cicer arietinum] gi|502172669|ref|XP_004515172.1|
PREDICTED: DNA-directed RNA polymerase III subunit
RPC8-like isoform X2 [Cicer arietinum]
Length = 196
Score = 227 bits (579), Expect = 7e-57
Identities = 103/196 (52%), Positives = 138/196 (70%), Gaps = 9/196 (4%)
Frame = -3
Query: 1124 MFFISELEHTIRVPPQLLDIPLPDAIKLELRKLFLDKVIKDLGLCVTLYDIQSIEGGFVF 945
MF++S +EH +R+PP LL +P+ DAI +EL KLFLDKVI +LGLC +YDI SIEGGF+F
Sbjct: 1 MFYLSRIEHKLRLPPSLLSLPIRDAIHMELEKLFLDKVIANLGLCTCVYDIISIEGGFIF 60
Query: 944 AGDGAPTYTVSFRLVMFRPFIGEVLVGKLKKSDKSGLYLSLGFFDDIHVPEHLLPEPTNF 765
AGDGAPTYTV F L+MFRP +GE++ KL SD GL LSLGFFDDI++P H +P P++F
Sbjct: 61 AGDGAPTYTVVFNLIMFRPIMGEIITAKLHSSDADGLRLSLGFFDDIYIPTHHMPNPSHF 120
Query: 764 ------VESESLWLWNY---EGAELFMDLDEDVRFRVSQIKYPPIPIEQDNDAKPFAPME 612
+W W++ EG +D ++++F+V + YPPIP+EQ ++KPFAPM
Sbjct: 121 DPMPGKSNKSVVWFWDFKKEEGLSYPIDSSDEIKFQVQSVSYPPIPVEQPKESKPFAPML 180
Query: 611 IIGDISASGLGLTSWW 564
+ G + GLG SWW
Sbjct: 181 VYGSLDQDGLGPVSWW 196
>ref|XP_004514743.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Cicer
arietinum]
Length = 196
Score = 226 bits (575), Expect = 2e-56
Identities = 103/196 (52%), Positives = 136/196 (69%), Gaps = 9/196 (4%)
Frame = -3
Query: 1124 MFFISELEHTIRVPPQLLDIPLPDAIKLELRKLFLDKVIKDLGLCVTLYDIQSIEGGFVF 945
MF++S +EH +R+PP LL +P+ DAI EL KLFLDKVI +LGLC +YDI SIEGGF+F
Sbjct: 1 MFYLSRIEHKLRLPPSLLSLPIRDAIHTELEKLFLDKVIANLGLCTCVYDIISIEGGFIF 60
Query: 944 AGDGAPTYTVSFRLVMFRPFIGEVLVGKLKKSDKSGLYLSLGFFDDIHVPEHLLPEPTNF 765
GDGAPTYTV F L+MFRP +GE++ KL SD GL LSLGFFDDI++P H +P P++F
Sbjct: 61 PGDGAPTYTVVFNLIMFRPIMGEIITAKLHSSDADGLRLSLGFFDDIYIPTHHMPNPSHF 120
Query: 764 ------VESESLWLWNY---EGAELFMDLDEDVRFRVSQIKYPPIPIEQDNDAKPFAPME 612
+W W+Y EG +D ++++F+V + YPPIP+EQ ++KPFAPM
Sbjct: 121 DPIPGKSNKSVVWFWDYKKEEGLSYPIDSSDEIKFQVQSVSYPPIPVEQPKESKPFAPML 180
Query: 611 IIGDISASGLGLTSWW 564
+ G + GLG SWW
Sbjct: 181 VYGSLDQDGLGPVSWW 196
>gb|EEE67155.1| hypothetical protein OsJ_24224 [Oryza sativa Japonica Group]
Length = 365
Score = 226 bits (575), Expect = 2e-56
Identities = 106/189 (56%), Positives = 139/189 (73%)
Frame = -3
Query: 1127 KMFFISELEHTIRVPPQLLDIPLPDAIKLELRKLFLDKVIKDLGLCVTLYDIQSIEGGFV 948
+MF +S++EH + +PP LL PL DAIK EL +LFLDKV+ +LGLCV++YDI+S+EGGF+
Sbjct: 163 EMFVLSQIEHNLPMPPHLLSRPLVDAIKAELERLFLDKVVANLGLCVSVYDIRSVEGGFI 222
Query: 947 FAGDGAPTYTVSFRLVMFRPFIGEVLVGKLKKSDKSGLYLSLGFFDDIHVPEHLLPEPTN 768
F G+G TY VSFRL+MFRPF+GEVLVGK+ D+ GL++SL FF DI +P HL+ T
Sbjct: 223 FPGEGCSTYKVSFRLLMFRPFVGEVLVGKISGYDEKGLHVSLDFFSDISIPGHLMQYGTA 282
Query: 767 FVESESLWLWNYEGAELFMDLDEDVRFRVSQIKYPPIPIEQDNDAKPFAPMEIIGDISAS 588
L +G EL++DLD+++RF VS IKYPPIP+EQ + FAPM+IIG I
Sbjct: 283 RALDGRWMLKTEDGDELYLDLDDEIRFLVSSIKYPPIPVEQKETDRAFAPMQIIGSIKGD 342
Query: 587 GLGLTSWWA 561
GLGL +WWA
Sbjct: 343 GLGLLAWWA 351
>ref|NP_001059628.1| Os07g0477000 [Oryza sativa Japonica Group]
gi|29837202|dbj|BAC75582.1| putative DNA-directed RNA
polymerase III subunit 22.9 kDa polypeptide [Oryza sativa
Japonica Group] gi|113611164|dbj|BAF21542.1| Os07g0477000
[Oryza sativa Japonica Group]
gi|215765537|dbj|BAG87234.1| unnamed protein product
[Oryza sativa Japonica Group] gi|218199590|gb|EEC82017.1|
hypothetical protein OsI_25976 [Oryza sativa Indica
Group]
Length = 202
Score = 225 bits (574), Expect = 3e-56
Identities = 106/188 (56%), Positives = 138/188 (73%)
Frame = -3
Query: 1124 MFFISELEHTIRVPPQLLDIPLPDAIKLELRKLFLDKVIKDLGLCVTLYDIQSIEGGFVF 945
MF +S++EH + +PP LL PL DAIK EL +LFLDKV+ +LGLCV++YDI+S+EGGF+F
Sbjct: 1 MFVLSQIEHNLPMPPHLLSRPLVDAIKAELERLFLDKVVANLGLCVSVYDIRSVEGGFIF 60
Query: 944 AGDGAPTYTVSFRLVMFRPFIGEVLVGKLKKSDKSGLYLSLGFFDDIHVPEHLLPEPTNF 765
G+G TY VSFRL+MFRPF+GEVLVGK+ D+ GL++SL FF DI +P HL+ T
Sbjct: 61 PGEGCSTYKVSFRLLMFRPFVGEVLVGKISGYDEKGLHVSLDFFSDISIPGHLMQYGTAR 120
Query: 764 VESESLWLWNYEGAELFMDLDEDVRFRVSQIKYPPIPIEQDNDAKPFAPMEIIGDISASG 585
L +G EL++DLD+++RF VS IKYPPIP+EQ + FAPM+IIG I G
Sbjct: 121 ALDGRWMLKTEDGDELYLDLDDEIRFLVSSIKYPPIPVEQKETDRAFAPMQIIGSIKGDG 180
Query: 584 LGLTSWWA 561
LGL +WWA
Sbjct: 181 LGLLAWWA 188
>ref|XP_002520987.1| DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus
communis] gi|223539824|gb|EEF41404.1| DNA-directed RNA
polymerase III 25 kD polypeptide, putative [Ricinus
communis]
Length = 194
Score = 225 bits (574), Expect = 3e-56
Identities = 102/196 (52%), Positives = 144/196 (73%), Gaps = 9/196 (4%)
Frame = -3
Query: 1124 MFFISELEHTIRVPPQLLDIPLPDAIKLELRKLFLDKVIKDLGLCVTLYDIQSIEGGFVF 945
MF++SE+EHT+R+PP LL +PL DA+K EL +FLDKVI +LGLC+++YD+ I+GGF+F
Sbjct: 1 MFYLSEIEHTLRLPPSLLSLPLQDAVKKELEIIFLDKVIANLGLCISVYDVTHIDGGFIF 60
Query: 944 AGDGAPTYTVSFRLVMFRPFIGEVLVGKLKKSDKSGLYLSLGFFDDIHVPEHLLPEPTNF 765
GDGA TYTV FR+V+FRPF+GE++V KLK+S+ GL LSLGFFDDI++P H LP+P+
Sbjct: 61 PGDGASTYTVRFRIVVFRPFVGEIIVAKLKESNNDGLRLSLGFFDDIYIPSHRLPKPSYS 120
Query: 764 VES-----ESLWLWNYEGAELFMDLD----EDVRFRVSQIKYPPIPIEQDNDAKPFAPME 612
+ +++W+W + + M+ + ++++FRV +KYPP+P+EQ KPFAPM
Sbjct: 121 QQDPENRYQAIWIWEFVSEDNKMEFNIDGLDEIKFRVDSVKYPPVPLEQQE--KPFAPMV 178
Query: 611 IIGDISASGLGLTSWW 564
I G I GLG SWW
Sbjct: 179 ITGSIDDEGLGPVSWW 194
>gb|EXB26576.1| DNA-directed RNA polymerase III subunit rpc8 [Morus notabilis]
Length = 200
Score = 224 bits (572), Expect = 5e-56
Identities = 99/192 (51%), Positives = 140/192 (72%), Gaps = 5/192 (2%)
Frame = -3
Query: 1124 MFFISELEHTIRVPPQLLDIPLPDAIKLELRKLFLDKVIKDLGLCVTLYDIQSIEGGFVF 945
MF++S +EHT+RVPP +L PL +AIK+EL KLFLDKVI +LGLC+++YDI SIEGGF+F
Sbjct: 1 MFYLSRIEHTLRVPPDILSRPLTEAIKVELEKLFLDKVIANLGLCISVYDIISIEGGFIF 60
Query: 944 AGDGAPTYTVSFRLVMFRPFIGEVLVGKLKKSDKSGLYLSLGFFDDIHVPEHLLPEPTN- 768
GDGA TYT F ++MFRPF+GE++ K+K+SD +GL L+LGFF+DI++P + LP+P+
Sbjct: 61 PGDGAATYTAVFTMIMFRPFVGEIISAKVKESDANGLRLTLGFFEDIYIPANFLPDPSRP 120
Query: 767 ----FVESESLWLWNYEGAELFMDLDEDVRFRVSQIKYPPIPIEQDNDAKPFAPMEIIGD 600
W+W + + +D ++++RF+V + YPPIP+EQ ++KPFAPM I G
Sbjct: 121 EPDPRKRDRVTWIWEFGEQKYVIDGEDEIRFQVHSVNYPPIPVEQPKESKPFAPMVITGS 180
Query: 599 ISASGLGLTSWW 564
+ GLG SWW
Sbjct: 181 LDCDGLGPVSWW 192
>dbj|BAK08181.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 224 bits (572), Expect = 5e-56
Identities = 108/188 (57%), Positives = 139/188 (73%)
Frame = -3
Query: 1124 MFFISELEHTIRVPPQLLDIPLPDAIKLELRKLFLDKVIKDLGLCVTLYDIQSIEGGFVF 945
MF +S++EH + +PP LL+ PL DAIK EL +LFLDKV+ +LGLCV++YDI+ +EGGF+F
Sbjct: 1 MFVLSQIEHNLPMPPHLLNRPLVDAIKSELERLFLDKVVANLGLCVSVYDIRKVEGGFIF 60
Query: 944 AGDGAPTYTVSFRLVMFRPFIGEVLVGKLKKSDKSGLYLSLGFFDDIHVPEHLLPEPTNF 765
G+G TYTVSFRL+MFRPFIGEVLVGK+ D+ GL +SL FF DI +P HL+ T
Sbjct: 61 PGEGCSTYTVSFRLLMFRPFIGEVLVGKISGYDEKGLQVSLDFFSDICIPGHLMQFGTVR 120
Query: 764 VESESLWLWNYEGAELFMDLDEDVRFRVSQIKYPPIPIEQDNDAKPFAPMEIIGDISASG 585
E L +G EL +D+D+++RF VS IKYPPIP+EQ D +PFAPM+I G I G
Sbjct: 121 GEDGRWALKTEDGDELPLDIDDEIRFLVSSIKYPPIPVEQKEDDRPFAPMQINGSIKGDG 180
Query: 584 LGLTSWWA 561
LGL +WWA
Sbjct: 181 LGLLAWWA 188
>ref|XP_006657688.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Oryza
brachyantha]
Length = 200
Score = 223 bits (568), Expect = 1e-55
Identities = 103/187 (55%), Positives = 136/187 (72%)
Frame = -3
Query: 1124 MFFISELEHTIRVPPQLLDIPLPDAIKLELRKLFLDKVIKDLGLCVTLYDIQSIEGGFVF 945
MF +S++EH + +PP +L PL DAIK EL +LFLDK++ +LGLCV++YDI+S+EGGF+F
Sbjct: 1 MFVLSQIEHNLPMPPHVLSRPLVDAIKAELERLFLDKIVANLGLCVSVYDIRSVEGGFIF 60
Query: 944 AGDGAPTYTVSFRLVMFRPFIGEVLVGKLKKSDKSGLYLSLGFFDDIHVPEHLLPEPTNF 765
G+G TY VSFRL+MFRPF+GEVLVGK+ D+ GL++SL FF DI +P HL+ T
Sbjct: 61 PGEGCSTYKVSFRLLMFRPFVGEVLVGKISGYDEKGLHVSLDFFSDICIPGHLMQYGTAR 120
Query: 764 VESESLWLWNYEGAELFMDLDEDVRFRVSQIKYPPIPIEQDNDAKPFAPMEIIGDISASG 585
L +G EL++D D+++RF VS IKYPPIP+EQ PFAPM+IIG I G
Sbjct: 121 ASDGRWMLKTEDGDELYLDTDDEIRFLVSSIKYPPIPVEQKETDSPFAPMQIIGSIKGDG 180
Query: 584 LGLTSWW 564
LGL +WW
Sbjct: 181 LGLLAWW 187
>ref|XP_002889618.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297335460|gb|EFH65877.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 204
Score = 223 bits (568), Expect = 1e-55
Identities = 108/194 (55%), Positives = 141/194 (72%), Gaps = 7/194 (3%)
Frame = -3
Query: 1124 MFFISELEHTIRVPPQLLDIPLPDAIKLELRKLFLDKVIKDLGLCVTLYDIQSIEGGFVF 945
MF++SELEH++RVPP LL++PL DAIK L+ +FLDKV+ DLGLCV++YDI+SIEGGFV
Sbjct: 1 MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSVYDIKSIEGGFVL 60
Query: 944 AGDGAPTYTVSFRLVMFRPFIGEVLVGKLKKSDKSGLYLSLGFFDDIHVPEHLLP----- 780
GDGA TY V FR+V+FRPF+GEV+ K K+SD +GL L+LGFFDDI+VP L+P
Sbjct: 61 PGDGAATYKVGFRIVVFRPFVGEVIAAKFKESDSNGLRLTLGFFDDIYVPAPLMPKPNRC 120
Query: 779 EPTNFVESESLWLWNY-EGAELFMDLDE-DVRFRVSQIKYPPIPIEQDNDAKPFAPMEII 606
EP + + +W+W Y E E F+ D ++FRV I YP +P E+ DAKPFAPM +
Sbjct: 121 EPDPYNRKQMIWVWEYGEPLEDFIIDDSCQIKFRVESISYPSVPTERAEDAKPFAPMVVT 180
Query: 605 GDISASGLGLTSWW 564
G++ GLG SWW
Sbjct: 181 GNMDEDGLGPVSWW 194
>ref|XP_003580811.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Brachypodium distachyon]
Length = 200
Score = 221 bits (562), Expect = 7e-55
Identities = 107/188 (56%), Positives = 136/188 (72%)
Frame = -3
Query: 1124 MFFISELEHTIRVPPQLLDIPLPDAIKLELRKLFLDKVIKDLGLCVTLYDIQSIEGGFVF 945
MF +S++EH + +PP LL PL DAIK EL +LFLDKVI +LGLCV++YDI ++EGGF+F
Sbjct: 1 MFVLSQIEHNLPMPPHLLSRPLVDAIKTELERLFLDKVIANLGLCVSVYDILAVEGGFIF 60
Query: 944 AGDGAPTYTVSFRLVMFRPFIGEVLVGKLKKSDKSGLYLSLGFFDDIHVPEHLLPEPTNF 765
G+G TY VSFRL+MFRPFIGEVLVGK+ D+ GL +SL F DI +P HL+ T
Sbjct: 61 PGEGCSTYKVSFRLLMFRPFIGEVLVGKISGYDEKGLQVSLDFSSDICIPGHLMQYGTVR 120
Query: 764 VESESLWLWNYEGAELFMDLDEDVRFRVSQIKYPPIPIEQDNDAKPFAPMEIIGDISASG 585
E L + EL++DLD+++RF V+ IKYPPIP+EQ D KPFAPM+I G I G
Sbjct: 121 GEDGRWMLKTEDDDELYLDLDDEIRFLVASIKYPPIPVEQKEDDKPFAPMQINGSIKGDG 180
Query: 584 LGLTSWWA 561
LGL +WWA
Sbjct: 181 LGLLAWWA 188
>ref|NP_172164.1| RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis
thaliana] gi|7523702|gb|AAF63141.1|AC011001_11
hypothetical protein [Arabidopsis thaliana]
gi|17529108|gb|AAL38764.1| putative RNA polymerase
[Arabidopsis thaliana] gi|23296904|gb|AAN13199.1|
putative RNA polymerase [Arabidopsis thaliana]
gi|332189917|gb|AEE28038.1| RNA polymerase Rpb7
N-terminal domain-containing protein [Arabidopsis
thaliana]
Length = 204
Score = 219 bits (557), Expect = 3e-54
Identities = 103/194 (53%), Positives = 139/194 (71%), Gaps = 7/194 (3%)
Frame = -3
Query: 1124 MFFISELEHTIRVPPQLLDIPLPDAIKLELRKLFLDKVIKDLGLCVTLYDIQSIEGGFVF 945
MF++SELEH++RVPP LL++PL DAIK L+ +FLDKV+ DLGLCV++YDI+S+EGGFV
Sbjct: 1 MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60
Query: 944 AGDGAPTYTVSFRLVMFRPFIGEVLVGKLKKSDKSGLYLSLGFFDDIHVPEHLLP----- 780
GDGA TY V R+V+FRPF+GEV+ K K+SD +GL L+LGFFDDI+VP L+P
Sbjct: 61 PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPAPLMPKPNRC 120
Query: 779 EPTNFVESESLWLWNYEGAELFMDLDE--DVRFRVSQIKYPPIPIEQDNDAKPFAPMEII 606
EP + + +W+W Y + +D+ ++FRV I YP +P E+ DAKPFAPM +
Sbjct: 121 EPDPYNRKQMIWVWEYGEPKEDYIVDDACQIKFRVESISYPSVPTERAEDAKPFAPMVVT 180
Query: 605 GDISASGLGLTSWW 564
G++ GLG SWW
Sbjct: 181 GNMDDDGLGPVSWW 194
>gb|EMT04694.1| DNA-directed RNA polymerase III subunit RPC8 [Aegilops tauschii]
Length = 271
Score = 216 bits (549), Expect = 2e-53
Identities = 105/183 (57%), Positives = 132/183 (72%)
Frame = -3
Query: 1109 ELEHTIRVPPQLLDIPLPDAIKLELRKLFLDKVIKDLGLCVTLYDIQSIEGGFVFAGDGA 930
++EH + +PP LL+ PL DAIK EL +L LDKV+ +LGLCV++YDI S+EGGF+F G+G
Sbjct: 69 QIEHNLPMPPHLLNRPLVDAIKAELERLLLDKVVANLGLCVSVYDILSVEGGFIFPGEGC 128
Query: 929 PTYTVSFRLVMFRPFIGEVLVGKLKKSDKSGLYLSLGFFDDIHVPEHLLPEPTNFVESES 750
TY VSFRL+MFRPFIGEVLVGK+ D+ GL +SL FF DI +P HL+ T E
Sbjct: 129 STYKVSFRLLMFRPFIGEVLVGKISGYDEKGLQVSLDFFSDICIPGHLMQFGTVRGEDGR 188
Query: 749 LWLWNYEGAELFMDLDEDVRFRVSQIKYPPIPIEQDNDAKPFAPMEIIGDISASGLGLTS 570
L +G EL +D D+++RF VS IKYPPIP+EQ D KPFAPM+I G I GLGL +
Sbjct: 189 WALKTEDGDELHLDTDDEIRFLVSSIKYPPIPVEQKEDDKPFAPMQINGSIKGDGLGLLA 248
Query: 569 WWA 561
WWA
Sbjct: 249 WWA 251